Citrus Sinensis ID: 022967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISNQ
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEccccccccccEEEEcccccEEEEccccEEEEEEccccEEEEEEEccccccccEEcccccEEEEEccccEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEccccccccccccccccccccccEEEEEEccccEEEEEccccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEccccccccEEEcccccEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEccccEEEEcccccEEEEEEcccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHcccccccccccccccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mtpssnpppttgssskrcvpvcSGIVLSCLLAFTLQIfffspispdllllppassaslipttsdiqsvtrlgegilngpedvcvdrngvlytaTRDGWIKRlhkngtwenwkliggdtllgitttqeneILVCDADKGLLKVTEEGVTVLASHvngsrinlADDLIAATDGSIYFSVASTKfglhnwgldlleakphgkllkydpslnetSILLDSLFFANgvalskdedyLVVCETFKFRCLKYWLKGESKEQTEIFVenlpggpdniklapdgsFWIAILQVFISNQ
Flexible Loop (DISEMBL)
mtpssnpppttgssskrcvPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGegilngpedvcvDRNGVLYTatrdgwikrlhkngtwenwklIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLashvngsriNLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISNQ
Low Complexity Region (SEG)
MtpssnpppttgsssKRCVPVCSGIVLSCLLAFTLQIFFFspispdllllppassaslipTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKliggdtllgitttQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISNQ
Disordered region (IsUnstruct)
*****************CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI***
Disordered Region (DISOPRED)
*********************CSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI*QVF****
Disordered Region (DISEMBL)
****************RCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISNQ
Disordered Region (DISPRO)
***************KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISN*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.937	0.653	0.336	8e-31
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.820	0.630	0.35	1e-30
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.961	0.674	0.322	3e-30
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.823	0.572	0.337	1e-27
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.816	0.568	0.337	2e-27
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.826	0.574	0.344	6e-26
Q803F5	415	Adipocyte plasma membrane	no	no	0.830	0.578	0.298	8e-24
P68174	342	Strictosidine synthase (F	N/A	no	0.626	0.529	0.311	2e-14
P68175	344	Strictosidine synthase OS	N/A	no	0.626	0.526	0.311	2e-14
P92976	329	Strictosidine synthase 3	no	no	0.712	0.626	0.288	4e-13

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 26/297 (8%)

Query: 7   PPPTTGSSSKRCVPVCSGIVLSCLLAFTL---QIFFFSPISPDLLLL--PPASSASLIPT 61
           P    GSS    V   + ++L+  LA  L    +   SPI P       PP     L P 
Sbjct: 25  PEVKEGSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPN 84

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTL-- 119
           T  ++   RL E  L+GPE + V+   VL+T T DG + +L +NG  E     G      
Sbjct: 85  TK-LRQAERLFENQLSGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKT 141

Query: 120 ----------LGITTTQENEILVCDADKGLLKVTEEGVTV---LASH--VNGSRINLADD 164
                     LGI       + V DA KGL +V  +  +V   L+S   + G +++  +D
Sbjct: 142 RDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 201

Query: 165 LIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
           L    DG  IYF+ +S+K+   ++ L ++EA   G+LL+YD    E  +LLD L F NGV
Sbjct: 202 LTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGV 261

Query: 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
            LS +ED+++V ET   R  + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A
Sbjct: 262 QLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVA 318

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.
Mus musculus (taxid: 10090)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 134/260 (51%), Gaps = 23/260 (8%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P       PP     L P T  ++   RL E  LNGPE + V+   VL+T T DG 
Sbjct: 23  SPIDPQSFSFKEPPFMFGVLQPNTK-LRQAERLFENQLNGPESI-VNIGDVLFTGTADGR 80

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVTEEG 146
           + +L +NG  E     G                LGI       + V DA KGL +V  + 
Sbjct: 81  VVKL-ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQK 139

Query: 147 VTV---LASH--VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            +V   L+S   + G +++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 140 RSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 199

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +LLD L F NGV LS +ED+++V ET   R  + ++ G  K   ++FVE
Sbjct: 200 LEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVE 259

Query: 261 NLPGGPDNIKLAPDGSFWIA 280
           N+PG PDNI+ +  G +W+A
Sbjct: 260 NMPGFPDNIRPSSSGGYWVA 279

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 148/304 (48%), Gaps = 26/304 (8%)

Query: 4   SSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQ---IFFFSPISPDLLLL--PPASSASL 58
           +  P    GSS    V   + ++L+  L   L    +   SPI P+ L    PP     L
Sbjct: 22  NRTPEAKGGSSFSGRVFRATFLMLAAFLTIPLLGALVLLDSPIDPEPLSFKEPPLFLGVL 81

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDT 118
            P T  +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E     G   
Sbjct: 82  QPNTK-LQQAERLFENQLVGPESIA-NIGDVMFTGTADGRVVKL-ENGEVETIARFGSGP 138

Query: 119 L------------LGITTTQENEILVCDADKGLLKVT--EEGVTVLASH---VNGSRINL 161
                        LGI       + V DA KGL +V   +  V +L S    + G +++ 
Sbjct: 139 CKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSF 198

Query: 162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA 220
            +DL    DG  IYF+ +S+K+   ++ L L+E    G+LL+YD    E  +LLD L F 
Sbjct: 199 LNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFP 258

Query: 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           NGV LS  ED+++V E    R  ++++ G  K   ++FVENLPG PDNI+ +  G +W++
Sbjct: 259 NGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVS 318

Query: 281 ILQV 284
           +  +
Sbjct: 319 MAAI 322

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 129/261 (49%), Gaps = 23/261 (8%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P  L    PP     L P T  ++   RL E  L GPE +      V++T T DG 
Sbjct: 63  SPIDPQPLSFKEPPLLLGVLHPNTK-LRQAERLFENQLVGPESIA-HIGDVMFTGTADGR 120

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVT--E 144
           + +L +NG  E     G                LGI       + V DA KGL +V   +
Sbjct: 121 VVKL-ENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWK 179

Query: 145 EGVTVLASH---VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
             V +L S    + G  ++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 180 REVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 239

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +LLD L F NGV LS  ED+++V ET   R  + ++ G  K   ++FVE
Sbjct: 240 LEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVE 299

Query: 261 NLPGGPDNIKLAPDGSFWIAI 281
           N+PG PDNI+ +  G +W+ +
Sbjct: 300 NMPGFPDNIRPSSSGGYWVGM 320

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 135/261 (51%), Gaps = 25/261 (9%)

Query: 42  PISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI 99
           PI P  + L  PP  +  L P  + +Q   RL E  L GPE + V+   VL+T T DG I
Sbjct: 63  PIDPQPISLKEPPLLTGVLEPN-NKLQKAERLWENQLVGPESI-VNIGDVLFTGTADGKI 120

Query: 100 KRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV---T 143
            ++                GT E+    G    LGI     N + V DA  GL +V   T
Sbjct: 121 LKIEDGEVQTVARIGHGPCGTPEDEPTCGRP--LGIRVGPNNTLFVADAYYGLYEVNPGT 178

Query: 144 EEGVTVLASH--VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            E   ++++   + G +++  +DL    DG  IYF+ +S+K+   ++   ++E    G+L
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRL 238

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +L+  L F NGV LS  ED+++V ET   R  +Y++ G  K   ++FVE
Sbjct: 239 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVE 298

Query: 261 NLPGGPDNIKLAPDGSFWIAI 281
           N+PG PDNI+L+  G +W+A+
Sbjct: 299 NMPGLPDNIRLSSSGGYWVAM 319

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 137/267 (51%), Gaps = 28/267 (10%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P+LL L  PP  S    P    ++   RL E  L GPE +  +   ++YT T DG 
Sbjct: 62  SPIHPELLSLSEPPLMSGCYEPNFK-LREAQRLFEDQLVGPESIA-NFGDLIYTGTADGK 119

Query: 99  I-----------KRLHK---NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-- 142
           I            RL K   +G+ E     G    LGI       + V DA  GL KV  
Sbjct: 120 IVKIEGKSITVIARLGKPPCDGSREQEPSCG--RPLGIRVGPNGTLFVADAYLGLFKVNP 177

Query: 143 -TEEGVTVLAS---HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH 197
            T E VT L S    V G R++  +DL    DG  +YF+ +S+++   ++   ++EA   
Sbjct: 178 VTGE-VTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATAD 236

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G++L+YD    E ++L+++L FANG+ L  DE+ ++V ET   R  +  + G +K   + 
Sbjct: 237 GRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDT 296

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQV 284
           FV+NLPG PDNI+ +  G +W+A+  V
Sbjct: 297 FVDNLPGFPDNIRRSSSGGYWVAMSAV 323

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 133/265 (50%), Gaps = 25/265 (9%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P++  L  PP  +    P    ++   RL E  L GPE +  +   V YT T DG 
Sbjct: 62  SPIQPEVFSLNEPPLMTGCYEPNLK-LRQAERLFEERLVGPESLA-NIGDVFYTGTADGK 119

Query: 99  IKRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--- 142
           I ++                G+ E+    G    LGI       + V DA  GL +V   
Sbjct: 120 IVKIEGRNIHVLATIGKPPCGSREHEHTCGRP--LGIRVGPNGTLFVADAYLGLFEVNPV 177

Query: 143 TEEGVTVLAS--HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK 199
           T E  +++++   + G R+   +DL    DG  +YF+ +S+++   ++   ++EA   G+
Sbjct: 178 TGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGR 237

Query: 200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV 259
           +L+YD    E ++++++L F NG+ L  DE+ ++V ET   R  +  + G +K   + F+
Sbjct: 238 VLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFI 297

Query: 260 ENLPGGPDNIKLAPDGSFWIAILQV 284
           ENLPG PDNI+ +  G +W+A+  V
Sbjct: 298 ENLPGFPDNIRRSSSGGYWVAMSAV 322

Danio rerio (taxid: 7955)

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 82  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 141

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 142 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 201

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274
             L    G  +S D  +++V E    + +KYWL+G  K   E+ V+ +P  P NIK   D
Sbjct: 202 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNAD 259

Query: 275 GSFWIA 280
           G FW++
Sbjct: 260 GHFWVS 265

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 84  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 143

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 144 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 203

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274
             L    G  +S D  +++V E    + +KYWL+G  K   E+ V+ +P  P NIK   D
Sbjct: 204 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNAD 261

Query: 275 GSFWIA 280
           G FW++
Sbjct: 262 GHFWVS 267

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 26/232 (11%)

Query: 74  GILNGPEDVCVDRNGV-LYTATRDGWI-KRLHKNGTWENWKLIGG------DTLLGITT- 124
           G   GPE    D  G   YT    G I K L K G  +  ++         D  LG T  
Sbjct: 36  GNRTGPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGALGTTNV 95

Query: 125 ------------TQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDL-IAAT 169
                       T+  ++ V DA  GL  +   G     +A  V G      D L +  T
Sbjct: 96  EKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query: 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229
            G +YF+  S+ FG  +    +      GK  KYDPS    ++L++ L  + G A+S D 
Sbjct: 156 TGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDG 215

Query: 230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIK-LAPDGSFWIA 280
            +++V +  K    +YW+KG     +E F  ++   PDNIK +   G+FW+A
Sbjct: 216 SFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVS-NPDNIKRIGSTGNFWVA 266

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.934	0.415	0.707	1e-112
297738547	461	unnamed protein product [Vitis vinifera]	0.934	0.585	0.707	1e-112
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.934	0.733	0.7	1e-110
297738546	382	unnamed protein product [Vitis vinifera]	0.913	0.691	0.674	1e-104
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.913	0.723	0.674	1e-104
255550417	356	Adipocyte plasma membrane-associated pro	0.920	0.747	0.654	1e-102
357450079	372	Adipocyte plasma membrane-associated pro	0.958	0.744	0.621	1e-100
388499476	372	unknown [Medicago truncatula]	0.958	0.744	0.621	1e-100
388511010	369	unknown [Lotus japonicus]	0.944	0.739	0.613	3e-98
357450071	360	Adipocyte plasma membrane-associated pro	0.906	0.727	0.646	4e-97

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/270 (70%), Positives = 230/270 (85%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 292 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 351

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 352 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 411

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 412 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 471

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 472 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 531

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           TE+FV+NLPGGPDNI LAPDGSFWIA+L++
Sbjct: 532 TEVFVDNLPGGPDNINLAPDGSFWIALLEL 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/270 (70%), Positives = 230/270 (85%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 103 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 162

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 163 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 222

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 223 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 282

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 283 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 342

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           TE+FV+NLPGGPDNI LAPDGSFWIA+L++
Sbjct: 343 TEVFVDNLPGGPDNINLAPDGSFWIALLEL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/270 (70%), Positives = 226/270 (83%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK+ +  CS  VL+ +LA TLQI+FFSPISPD L LPP S+A  +PT + +Q VT++GEG
Sbjct: 10  SKQHLQTCSSFVLASILASTLQIYFFSPISPDPLHLPPVSAAINLPTNNKLQEVTKIGEG 69

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
            LN PED+C D  G+LYTATRDGWIKRLH+NG+WE+WKLIGG  LLGITT +   I VCD
Sbjct: 70  FLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARAGGIFVCD 129

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
           A KGLLKV E+GV+ L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LDLLEA
Sbjct: 130 AQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEA 189

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSI+LD+L F NGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 190 KPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 249

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           TE F++NLP GPDNI LAPDGSFWIA++++
Sbjct: 250 TETFIDNLPNGPDNINLAPDGSFWIALIKL 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 225/267 (84%), Gaps = 3/267 (1%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 30  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 88

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 89  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 148

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 149 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 206

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWL+GE K +TE 
Sbjct: 207 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTET 266

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQV 284
           F++NLPGGPDN+ LAPDGSFWIA+++V
Sbjct: 267 FIDNLPGGPDNVNLAPDGSFWIALIKV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 225/267 (84%), Gaps = 3/267 (1%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 13  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 71

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 72  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 131

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 132 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 189

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWL+GE K +TE 
Sbjct: 190 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTET 249

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQV 284
           F++NLPGGPDN+ LAPDGSFWIA+++V
Sbjct: 250 FIDNLPGGPDNVNLAPDGSFWIALIKV 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/269 (65%), Positives = 213/269 (79%), Gaps = 3/269 (1%)

Query: 16  KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGI 75
           K C   C  +V+ CLLAF  QI++FSPISPDLL LP   +   +P    +Q V +LGEG 
Sbjct: 2   KACARTCLSVVVVCLLAFIFQIYYFSPISPDLLQLP---APFFLPPNKQLQEVIKLGEGF 58

Query: 76  LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDA 135
           + GPEDVC+D++GVLYTA RD WIKR+HKNG+WENWK I  D LLGI  ++E  ++VCDA
Sbjct: 59  IQGPEDVCMDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDA 118

Query: 136 DKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195
           D GLLKVTE+GVTVLAS VNGS+I  ADD I ++DG+IYFSV STKFGLHNW LD+LEA+
Sbjct: 119 DTGLLKVTEDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEAR 178

Query: 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT 255
           PHG+LLKYDP+ N+TS+LLD L F NGVALS +EDYLV CE++KFRC K+WLKGE K +T
Sbjct: 179 PHGQLLKYDPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKT 238

Query: 256 EIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           E  ++NLPG PDNI LAPDGSFWI +LQV
Sbjct: 239 ETLIDNLPGAPDNINLAPDGSFWICLLQV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/280 (62%), Positives = 229/280 (81%), Gaps = 3/280 (1%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+KFRC++
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVR 242

Query: 245 YWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           +WLKG +  +T+IF+ENLPGGPDNI LAPDGSFWIA++Q+
Sbjct: 243 HWLKGINNGKTDIFIENLPGGPDNINLAPDGSFWIALVQL 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/280 (62%), Positives = 228/280 (81%), Gaps = 3/280 (1%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+KFRC++
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVR 242

Query: 245 YWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           +WLKG    +T+IF+ENLPGGPDNI LAPDGSFWIA++Q+
Sbjct: 243 HWLKGIDNGKTDIFIENLPGGPDNINLAPDGSFWIALVQL 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511010|gb|AFK43571.1| unknown [Lotus japonicus]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/277 (61%), Positives = 217/277 (78%), Gaps = 4/277 (1%)

Query: 8   PPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQS 67
           P T   S+ +CV + S +VL+ L+A T+Q+F+FSPI P LL + PA S       + +Q+
Sbjct: 5   PTTQPFSTGKCVTLGSSLVLAALVALTVQVFYFSPIDPVLLDIAPAPSTK----NNKLQN 60

Query: 68  VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQE 127
           V++LGEG+L  PEDVC D  G LYT TRDGWIKRL +NG WENWK +    LLGIT  ++
Sbjct: 61  VSKLGEGLLKQPEDVCFDEEGTLYTTTRDGWIKRLRRNGNWENWKHVDSHALLGITAAKD 120

Query: 128 NEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
             ++VCDA+KGLLKVTEEG +VLA+ VNGS +  ADD+I A+DG IYFS ASTKFG  NW
Sbjct: 121 GGLIVCDANKGLLKVTEEGFSVLATQVNGSPMRFADDVIEASDGDIYFSDASTKFGFGNW 180

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247
            L++LEA+PHG++LKY+P  NET+I+LD+L FANGVALSKD+DYLVVCET+KFRC ++WL
Sbjct: 181 YLEMLEARPHGRVLKYNPVSNETTIVLDNLAFANGVALSKDQDYLVVCETWKFRCTRHWL 240

Query: 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
           KG +K +T+IF+ENLPG PDNI LAPDGSFWIA+LQ+
Sbjct: 241 KGANKGKTDIFIENLPGAPDNINLAPDGSFWIALLQI 277

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450071|ref|XP_003595312.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484360|gb|AES65563.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 218/263 (82%), Gaps = 1/263 (0%)

Query: 23  SGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDV 82
           S +VL+ L+A T+Q+F+FSPI P +L +P A+S++     + +Q+V +LGEG L  PEDV
Sbjct: 9   SSLVLAALVALTVQVFYFSPIDPVILEIPSAASSTSSTKNNQLQNVIKLGEGFLKQPEDV 68

Query: 83  CVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV 142
           CVD++G+LYTATRDGWIKR+ +NG WENWK I   +LLGITT+++  ++VCDA KGLLKV
Sbjct: 69  CVDKDGILYTATRDGWIKRMVRNGNWENWKHIDSSSLLGITTSKDGGLIVCDATKGLLKV 128

Query: 143 TEE-GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201
           TEE G +V+ S VNGS++  ADD+I A+DG+IYFSV STKFG+HNW LD+LEA+ HG+LL
Sbjct: 129 TEEEGFSVILSQVNGSQLMFADDVIEASDGNIYFSVPSTKFGMHNWYLDVLEARSHGQLL 188

Query: 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN 261
           +Y+P  NET I+LD L FANGVALSKDEDYL+VCET+KFRCLKYWLKG +K +TEIF+EN
Sbjct: 189 RYNPLSNETVIVLDHLAFANGVALSKDEDYLLVCETWKFRCLKYWLKGINKGKTEIFIEN 248

Query: 262 LPGGPDNIKLAPDGSFWIAILQV 284
           LP GPDNI LAPDGSFWIA++Q+
Sbjct: 249 LPAGPDNINLAPDGSFWIALIQI 271

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.719	0.562	0.368	4.8e-39
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.719	0.560	0.385	8.9e-38
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.719	0.560	0.372	1.1e-37
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.716	0.557	0.369	3.9e-37
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.536	0.384	0.417	8.2e-28
ZFIN|ZDB-GENE-081022-75	432	zgc:194209 "zgc:194209" [Danio	0.550	0.368	0.347	8.1e-27
RGD|1308874	376	Apmap "adipocyte plasma membra	0.740	0.569	0.337	8.4e-26
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.740	0.554	0.337	8.4e-26
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.754	0.525	0.319	3.6e-25
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.754	0.529	0.323	9.7e-25

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 81/220 (36%), Positives = 131/220 (59%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--HKNGT---WENWKXXXXXXXXXXXX 124
             +G G+LN PED+   ++  ++YT   DGW+KR+  H +      E+W             
Sbjct:    62 IGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA+KGLL +++ G    +L    +G R  L D +  A +G +YF+ AS+K+
Sbjct:   122 LH-GEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
               + +  D LE KPHG+++ +DP+   T +LL  L+FANG+++S D+ + V CET   RC
Sbjct:   181 DFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282
              KY++   S+E+ E+F++ LPG PDNI+   DG +WIA++
Sbjct:   241 SKYYI---SEERVEVFIQGLPGYPDNIRYDGDGHYWIALI 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 84/218 (38%), Positives = 125/218 (57%)

Query:    71 LGEGILNGPEDVCV-DRNGVLYTATRDGWIKRLHK----NGTWENWKXXXXXXXXXXXXX 125
             +G G+LN PED+   + +G +YT   DGW+KR+      N +                  
Sbjct:    62 IGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFG 121

Query:   126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG 183
                E++V DA KGLL ++ +G    +L    +G R  L D +  A +G +YF+  S K+ 
Sbjct:   122 IHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYN 181

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
             LH +  D+LE KPHG+L+ +DP+   T +LL  L+FANGV+LS D+ +LV CET   RC 
Sbjct:   182 LHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCS 241

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281
             KY++ G    + E+F++ LPG PDNI+   DG +WIA+
Sbjct:   242 KYYINGG---RVELFIQGLPGYPDNIRYDGDGHYWIAM 276

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 82/220 (37%), Positives = 130/220 (59%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--H---KNGTWENWKXXXXXXXXXXXX 124
             +G G+L+ PED+   ++  ++YT   DGW+KR+  H    +   E+W             
Sbjct:    62 IGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA KGLL ++ +G    +L     G +  L D +  A +G +YF+ AS K+
Sbjct:   122 VH-GEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
              LH    D+LE KPHG+L+ +DP+   T +LL  L+FANGV++S D+ +L+ CET   RC
Sbjct:   181 TLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL 282
              KY++   ++E+ E+F++ LPG PDNI+   DG +WIA++
Sbjct:   241 SKYYI---NEERVEVFIQGLPGYPDNIRYDGDGHYWIAMV 277

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 81/219 (36%), Positives = 127/219 (57%)

Query:    71 LGEGILNGPEDVCVDR-NGVLYTATRDGWIKRLH-----KNGTWENWKXXXXXXXXXXXX 124
             +G G+LN PED+   + + ++YT   DGW+KR+       +   E+W             
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V D  KGLL ++ +G    +L    +G +  L D +  A +G +YF+ AS K+
Sbjct:   122 IH-GEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
              L+   LD+LE KP G+LL +DP+   T +LL  L+FANG+ +S D+ +L+ CET   RC
Sbjct:   181 TLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281
              KY++   S+E+ E+F ++LPG PDNI+   DG +WIA+
Sbjct:   241 SKYYI---SEERVEVFTQSLPGYPDNIRYDGDGHYWIAL 276

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 66/158 (41%), Positives = 95/158 (60%)

Query:   126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG 183
             +   + + DA  GLL V  EG   T LA+HV G  I  A+DL    +GSI+F+  S ++ 
Sbjct:   160 ETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYD 219

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               N    LLE +  G+LL+YDP    T I+L+ L F NG+ LSKD+ +L+  ET   R +
Sbjct:   220 RANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNGIQLSKDQSFLLFTETTNCRLV 279

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281
             KYWL+G    + E+ V +LPG PDN+++  +G FW+AI
Sbjct:   280 KYWLEGPKMGEVEV-VADLPGFPDNVRINEEGQFWVAI 316

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ZFIN|ZDB-GENE-081022-75 zgc:194209 "zgc:194209" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
 Identities = 57/164 (34%), Positives = 95/164 (57%)

Query:   126 QENEILVCDADKGLLKVTEE-GV-TVLASHVNGSR---INLADDLIAATDGSIYFSVAST 180
             ++ +++V D+  GL KV    G  T+L S  +G+        + L  + +G+++F+ +S+
Sbjct:   175 RDGQLIVADSYYGLFKVDPSTGEKTLLHSSKDGADGIPFGFLNGLEISKNGTVFFTDSSS 234

Query:   181 KFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF 240
             K+G  +   ++LE    G+LL +DP+      LLDSL+  NG A S DED+L++ ET   
Sbjct:   235 KWGRRHVRYEVLETNRLGRLLTFDPTSGRVRTLLDSLYMPNGFAFSPDEDFLLLAETSIG 294

Query:   241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
             R +K+WLKG      E+ + N+ G PDNI+L+  G+F + I  V
Sbjct:   295 RIIKFWLKGPKAGMKEVVLNNMIGYPDNIRLSDRGTFLVGISTV 338

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 79/234 (33%), Positives = 121/234 (51%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--------WKXXXX 116
             ++   RL E  LNGPE + V+   VL+T T DG + +L +NG  E          K    
Sbjct:    48 LRQAERLFENQLNGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKTRDD 105

Query:   117 XXX----XXXXXXQENEILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V  +   V +L S    + G +++  +DL  
Sbjct:   106 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 165

Query:   168 ATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   166 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLS 225

Query:   227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
              +ED+++V ET   R  + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A
Sbjct:   226 PEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVA 279

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 79/234 (33%), Positives = 121/234 (51%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--------WKXXXX 116
             ++   RL E  LNGPE + V+   VL+T T DG + +L +NG  E          K    
Sbjct:    58 LRQAERLFENQLNGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKTRDD 115

Query:   117 XXX----XXXXXXQENEILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V  +   V +L S    + G +++  +DL  
Sbjct:   116 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 175

Query:   168 ATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   176 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLS 235

Query:   227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
              +ED+++V ET   R  + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A
Sbjct:   236 PEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVA 289

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 76/238 (31%), Positives = 120/238 (50%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKXXXXX------- 117
             +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E               
Sbjct:    87 LQQAERLFENQLIGPESIA-NIGDVMFTGTADGRLVKL-ENGEVETIARFGSGPCKTRDD 144

Query:   118 -----XXXXXXXXQENEILVCDADKGLLKVT--EEGVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V   +  V +L S    + G +++  +DL  
Sbjct:   145 EPACGRLLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTI 204

Query:   168 ATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   205 TQDGKKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLS 264

Query:   227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
              +ED+++V ET   R  ++++ G  K   ++FVENLPG PDNI+ +  G +W+ +  +
Sbjct:   265 PEEDFVLVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATI 322

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 77/238 (32%), Positives = 120/238 (50%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--------WKXXXX 116
             +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E          K    
Sbjct:    87 LQQAERLFENQLVGPESIA-NIGDVMFTGTADGRVVKL-ENGEVETIARFGSGPCKTRDD 144

Query:   117 XXX----XXXXXXQENEILVCDADKGLLKVT---EEGVTVLASH--VNGSRINLADDLIA 167
                              + V DA KGL +V     E   +L+S   + G +++  +DL  
Sbjct:   145 EPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTV 204

Query:   168 ATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L L+E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   205 TRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLS 264

Query:   227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV 284
               ED+++V E    R  ++++ G  K   ++FVENLPG PDNI+ +  G +W+++  +
Sbjct:   265 PAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAI 322

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	9e-28
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	1e-22
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	1e-08

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  102 bits (256), Expect = 9e-28
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query: 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL 225
           +    G +YF+ +S+++        +LE    G+L+KYDPS   T +LL  L+F NG+AL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 226 SKDEDYLVVCETFKFRCLKYWLKGE 250
           S D  +++ CET   R  KYW+KG 
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 94.8 bits (236), Expect = 1e-22
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 18/217 (8%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN 128
            LGEG +  P     DR  +L+     G I RL  + G    +   GG +   +      
Sbjct: 25  TLGEGPVWDP-----DRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR 79

Query: 129 EILVCDADKGLLKV-TEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
            ++ C+    LL   T   +T+LA   +G  +N  +D +   DG I+F        +  +
Sbjct: 80  -LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG------DMGYF 132

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247
            L   E +P G L + DP      +L D L   NG+A S D   L V +T   R  +Y L
Sbjct: 133 DLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192

Query: 248 KGE----SKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
                     +  +  +  PG PD + +  DG+ W+A
Sbjct: 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 29/220 (13%)

Query: 71  LGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH----KNGTWENWKLIGGDTLLGITTTQ 126
           LGEG +        +   + +     G I RL     K   W+    +G      I    
Sbjct: 1   LGEGPV-----WDEEEGALYWVDILGGRIHRLDPATGKETVWDLPGPVGA-----IALRD 50

Query: 127 ENEILVCDAD-KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH 185
           +  ++V       LL +    +T LA       +N  +D     DG  +F          
Sbjct: 51  DGRLIVALKRGLALLDLDTGELTTLADLEPDEPLNRFNDGKVDPDGRFWFGTM------- 103

Query: 186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKY 245
             G D+      G L + DP   +   +LD +  +NG+A S D   L   ++   R   +
Sbjct: 104 --GFDIAPGGEPGALYRLDPDG-KVERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAF 160

Query: 246 --WLKGESKEQTEIFV--ENLPGGPDNIKLAPDGSFWIAI 281
                G       +F   ++  G PD + +  +G+ W+A 
Sbjct: 161 DYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.92
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.7
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.62
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.35
PRK11028	330	6-phosphogluconolactonase; Provisional	99.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.27
PRK11028	330	6-phosphogluconolactonase; Provisional	99.26
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.26
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	99.21
COG3391	381	Uncharacterized conserved protein [Function unknow	99.1
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.94
COG3391	381	Uncharacterized conserved protein [Function unknow	98.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.89
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.8
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.74
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.68
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.62
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.55
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.54
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.5
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.47
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.46
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.44
PRK04792	448	tolB translocation protein TolB; Provisional	98.37
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.36
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.35
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.35
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.34
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.33
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.27
PRK04922	433	tolB translocation protein TolB; Provisional	98.23
PRK00178	430	tolB translocation protein TolB; Provisional	98.16
PRK02889	427	tolB translocation protein TolB; Provisional	98.16
PRK05137	435	tolB translocation protein TolB; Provisional	98.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.15
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.14
PRK03629	429	tolB translocation protein TolB; Provisional	98.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.12
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.12
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.05
PRK02888	635	nitrous-oxide reductase; Validated	98.01
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.0
PRK04043	419	tolB translocation protein TolB; Provisional	97.99
PRK05137	435	tolB translocation protein TolB; Provisional	97.97
PRK04792	448	tolB translocation protein TolB; Provisional	97.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.94
PRK03629	429	tolB translocation protein TolB; Provisional	97.93
KOG2055	514	consensus WD40 repeat protein [General function pr	97.93
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.92
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.91
PRK01742	429	tolB translocation protein TolB; Provisional	97.88
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.86
PRK02889	427	tolB translocation protein TolB; Provisional	97.85
PRK04922	433	tolB translocation protein TolB; Provisional	97.84
KOG0266	456	consensus WD40 repeat-containing protein [General	97.8
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.77
PRK00178	430	tolB translocation protein TolB; Provisional	97.75
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.72
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.69
PRK01742	429	tolB translocation protein TolB; Provisional	97.69
PRK04043	419	tolB translocation protein TolB; Provisional	97.64
PTZ00421	493	coronin; Provisional	97.62
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.59
KOG0286	343	consensus G-protein beta subunit [General function	97.59
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.58
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.54
KOG2139	445	consensus WD40 repeat protein [General function pr	97.54
KOG0289	506	consensus mRNA splicing factor [General function p	97.52
COG4946	668	Uncharacterized protein related to the periplasmic	97.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.48
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.47
PRK13684	334	Ycf48-like protein; Provisional	97.47
KOG0266	456	consensus WD40 repeat-containing protein [General	97.47
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.46
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.46
KOG0289	506	consensus mRNA splicing factor [General function p	97.43
KOG1539	910	consensus WD repeat protein [General function pred	97.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.42
PRK01029	428	tolB translocation protein TolB; Provisional	97.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.41
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.41
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.4
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.4
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.38
PTZ00420	568	coronin; Provisional	97.38
KOG1274	933	consensus WD40 repeat protein [General function pr	97.37
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.36
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.33
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.32
KOG1273	405	consensus WD40 repeat protein [General function pr	97.3
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.28
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.28
PTZ00421	493	coronin; Provisional	97.22
KOG2055	514	consensus WD40 repeat protein [General function pr	97.21
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	97.19
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.18
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.14
COG3211	616	PhoX Predicted phosphatase [General function predi	97.12
KOG1274	933	consensus WD40 repeat protein [General function pr	97.1
COG3211	616	PhoX Predicted phosphatase [General function predi	97.07
PTZ00420	568	coronin; Provisional	97.05
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.04
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.04
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.92
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.91
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.86
PLN00181	793	protein SPA1-RELATED; Provisional	96.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	96.85
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.82
PRK13684	334	Ycf48-like protein; Provisional	96.81
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.81
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.8
PRK13616	591	lipoprotein LpqB; Provisional	96.78
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.73
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.72
KOG0646	476	consensus WD40 repeat protein [General function pr	96.63
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.58
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.58
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.54
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.52
KOG2048	691	consensus WD40 repeat protein [General function pr	96.48
KOG2048	691	consensus WD40 repeat protein [General function pr	96.45
KOG1273	405	consensus WD40 repeat protein [General function pr	96.45
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.4
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.32
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.28
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.28
COG4946	668	Uncharacterized protein related to the periplasmic	96.25
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.24
KOG0286	343	consensus G-protein beta subunit [General function	96.17
PRK02888	635	nitrous-oxide reductase; Validated	96.13
KOG1539	910	consensus WD repeat protein [General function pred	96.13
PRK01029	428	tolB translocation protein TolB; Provisional	96.13
KOG0771	398	consensus Prolactin regulatory element-binding pro	96.09
PF07494	24	Reg_prop: Two component regulator propeller; Inter	96.08
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.06
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.0
PLN00181	793	protein SPA1-RELATED; Provisional	95.94
KOG0296	399	consensus Angio-associated migratory cell protein	95.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	95.88
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.84
KOG0646	476	consensus WD40 repeat protein [General function pr	95.82
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.76
KOG1407	313	consensus WD40 repeat protein [Function unknown]	95.74
KOG0279	315	consensus G protein beta subunit-like protein [Sig	95.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.6
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	95.57
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.45
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.37
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.27
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.25
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	95.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.02
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.96
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.91
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.86
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	94.76
KOG0283	712	consensus WD40 repeat-containing protein [Function	94.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.72
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.68
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.53
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	94.51
KOG2139	445	consensus WD40 repeat protein [General function pr	94.49
KOG0275	508	consensus Conserved WD40 repeat-containing protein	94.46
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.41
KOG1963	792	consensus WD40 repeat protein [General function pr	94.31
KOG1215	877	consensus Low-density lipoprotein receptors contai	94.27
KOG0643	327	consensus Translation initiation factor 3, subunit	94.15
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	94.13
KOG0639	705	consensus Transducin-like enhancer of split protei	94.12
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.1
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.05
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.7
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.5
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.44
KOG0284	464	consensus Polyadenylation factor I complex, subuni	93.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.36
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	93.35
KOG0639	705	consensus Transducin-like enhancer of split protei	93.31
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.24
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	93.21
KOG2315	566	consensus Predicted translation initiation factor	93.2
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	93.11
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.07
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	93.05
KOG0643	327	consensus Translation initiation factor 3, subunit	92.99
KOG0645	312	consensus WD40 repeat protein [General function pr	92.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.86
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	92.58
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.57
KOG0645	312	consensus WD40 repeat protein [General function pr	92.54
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	92.41
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.32
KOG4328	498	consensus WD40 protein [Function unknown]	92.26
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.26
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	91.79
PF07494	24	Reg_prop: Two component regulator propeller; Inter	91.69
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	91.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.51
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.44
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	91.21
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.17
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	90.48
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	90.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.4
KOG0641	350	consensus WD40 repeat protein [General function pr	90.16
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	90.15
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	90.02
COG5276	370	Uncharacterized conserved protein [Function unknow	90.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.78
KOG0284	464	consensus Polyadenylation factor I complex, subuni	89.69
KOG1215	877	consensus Low-density lipoprotein receptors contai	89.4
PHA02713	557	hypothetical protein; Provisional	89.31
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	89.21
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	89.12
PHA02713	557	hypothetical protein; Provisional	89.06
KOG0316	307	consensus Conserved WD40 repeat-containing protein	89.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	88.92
KOG4547	541	consensus WD40 repeat-containing protein [General	88.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	88.27
KOG2096	420	consensus WD40 repeat protein [General function pr	87.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	87.67
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	87.52
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	87.17
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	87.03
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	86.9
KOG2096	420	consensus WD40 repeat protein [General function pr	86.64
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.64
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	86.53
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	86.33
KOG2321	703	consensus WD40 repeat protein [General function pr	86.28
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	85.99
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	85.94
KOG0771	398	consensus Prolactin regulatory element-binding pro	85.5
KOG0295	406	consensus WD40 repeat-containing protein [Function	85.05
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	84.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	84.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	83.99
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	83.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	83.57
PHA03098	534	kelch-like protein; Provisional	83.31
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	83.04
KOG0296	399	consensus Angio-associated migratory cell protein	83.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.52
KOG3881	412	consensus Uncharacterized conserved protein [Funct	82.18
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	82.1
KOG0294	362	consensus WD40 repeat-containing protein [Function	81.5
KOG2321	703	consensus WD40 repeat protein [General function pr	81.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	81.05
KOG0647	347	consensus mRNA export protein (contains WD40 repea	80.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	80.7
PHA02790	480	Kelch-like protein; Provisional	80.67

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=4.6e-34  Score=241.91  Aligned_cols=255  Identities=30%  Similarity=0.499  Sum_probs=199.4

Q ss_pred             HHHHHHHHHhccCCCcccccc-CCCCCCCCCCCCCccccceeEeccCCcCCcceEEEccCCC--EEEEecCCeEEEEec-
Q 022967           29 CLLAFTLQIFFFSPISPDLLL-LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHK-  104 (289)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~d~~g~--l~v~~~~g~i~~~~~-  104 (289)
                      ++.+++..+....+..+.... .+..|..+...++..+...+.+..+....|+.+.+. +|+  .|.+...|.|-+.+. 
T Consensus        16 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~   94 (376)
T KOG1520|consen   16 AVIILLYLLSGSSIAGSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTK   94 (376)
T ss_pred             HHHHhhhccCcccccCCchhcccCCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEecc
Confidence            333334444444444333333 233333344555555555555555555545555544 334  567777777766652 


Q ss_pred             ----CCc-----eEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEeC-CC-eEEEEeccCCccccCccceEEcCCCc
Q 022967          105 ----NGT-----WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS  172 (289)
Q Consensus       105 ----~g~-----~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~  172 (289)
                          .+.     .......|++|+ ||+++..| +|||||.+.|++.++. .| .+.+.....+.++...+++.++++|.
T Consensus        95 ~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~  173 (376)
T KOG1520|consen   95 DSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV  173 (376)
T ss_pred             ccccccccCCCcceecccccCCcc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe
Confidence                111     122234589999 99999877 9999999999999995 45 67777788888999999999999999


Q ss_pred             EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC
Q 022967          173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK  252 (289)
Q Consensus       173 lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~  252 (289)
                      +||+|.+++|..++....++++..+|++++||+.++..+++.+++.+|||+++++|+..+.++++...+|.+|++.|++.
T Consensus       174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~  253 (376)
T KOG1520|consen  174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA  253 (376)
T ss_pred             EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          253 EQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       253 ~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ++.+.|.+++|++||||..|++|.+||+.....
T Consensus       254 gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~  286 (376)
T KOG1520|consen  254 GTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR  286 (376)
T ss_pred             CchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence            999999999999999999999999999987543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.94  E-value=6.6e-25  Score=184.53  Aligned_cols=193  Identities=26%  Similarity=0.443  Sum_probs=147.2

Q ss_pred             cceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEc-CCCcEEEEeCCCceEEEe-CCC-eEEEEec
Q 022967           79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        79 p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~  153 (289)
                      ||++++|+ +|.||+.+ .+++|++++.++.......... |. |++++ ++|.+|+++. .++..+| .+| ++.+...
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence            68899997 89999655 7899999996555443333223 88 99999 7899999996 6677778 778 7777665


Q ss_pred             cCCc-cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEE
Q 022967          154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (289)
Q Consensus       154 ~~~~-~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l  232 (289)
                      ..+. ++..+++++++++|+|||+++.....         .....|+|++++++ ++...+..++..||||++++|++.|
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence            4343 67899999999999999998752110         00011789999998 8888888889999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCC--CCcceeeeecc--CCCCCCceeeCCCCCEEEEEeCc
Q 022967          233 VVCETFKFRCLKYWLKGE--SKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       233 ~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      |++++..++|++|+++..  .+...+.+.+.  ..+.|+|+++|++|+|||+.+.+
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            999999999999999743  24445555432  22469999999999999998754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.4e-23  Score=177.82  Aligned_cols=193  Identities=28%  Similarity=0.443  Sum_probs=147.7

Q ss_pred             EEcc-CCCEE-EEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-e-EEEEeccCC
Q 022967           83 CVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-V-TVLASHVNG  156 (289)
Q Consensus        83 ~~d~-~g~l~-v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~-~~~~~~~~~  156 (289)
                      ..++ .+.|| ++...++|+++++ +|+...+......+. ++.++..|.|++++  +++++++ +.+ . +.+.....+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCC
Confidence            4444 44455 7778999999995 688888888777788 99999888888887  4566665 555 4 777777777


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~  236 (289)
                      .+.+.+|+..++++|++||+++..    .+  ....+....|.||+++|.++..+.+...+..||||+||||++.||++|
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~----~~--~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGY----FD--LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCc----cc--cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence            788999999999999999999872    11  223344567899999997555555555599999999999999999999


Q ss_pred             CCCCeEEEEEec---CCCCcce-eeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          237 TFKFRCLKYWLK---GESKEQT-EIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       237 ~~~~~i~~~~~~---~~~~~~~-~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +..++|++|+.+   +...... ..+.+..++.|||+++|++|++|++...+
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            999999999987   3222222 33444556899999999999999655443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.78  E-value=5.9e-19  Score=121.85  Aligned_cols=88  Identities=51%  Similarity=1.009  Sum_probs=74.1

Q ss_pred             cceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       163 ~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      ++++++++ |.|||++.+++|...++..+++|+.++|+|++|||.+++.+++.+++.+|||+++++|++.++|+|+...|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            57899998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 022967          242 CLKYWLKGE  250 (289)
Q Consensus       242 i~~~~~~~~  250 (289)
                      |.||+++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.74  E-value=4.8e-16  Score=153.38  Aligned_cols=192  Identities=19%  Similarity=0.217  Sum_probs=138.8

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEeeee---------------cCcCccCeEEcCCCc-EEEEeCC
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD  136 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-l~v~~~~  136 (289)
                      ++..|.++++|+ +|+||+++ .+++|.+++.+|........               ...|. ||+++++++ |||+|.+
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence            478899999997 68899877 67899999988875433221               13588 999998765 8999976


Q ss_pred             -CceEEEe-CCC-eEEEEec------cCC------ccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEE
Q 022967          137 -KGLLKVT-EEG-VTVLASH------VNG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (289)
Q Consensus       137 -~~i~~~~-~~g-~~~~~~~------~~~------~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i  200 (289)
                       +.|.+++ .++ ++.+...      ..+      ..++.|.++++++ +|.+||++..                 +++|
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I  707 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI  707 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence             4577788 667 6666432      011      1256889999999 6899999864                 4678


Q ss_pred             EEEeCCCCeEEEee---------------CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcce----------
Q 022967          201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT----------  255 (289)
Q Consensus       201 ~~~~~~~~~~~~~~---------------~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~----------  255 (289)
                      +++|..++....+.               ..+..|+||++++++++|||++..+++|++||+++......          
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            88887766554432               12567999999999999999999999999999864321000          


Q ss_pred             -eeeec-------cCCCCCCceeeCCCCCEEEEEeCc
Q 022967          256 -EIFVE-------NLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       256 -~~~~~-------~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                       ..+.+       .....|.++++|.+|++||+....
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N  824 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN  824 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence             00100       011368999999999999998654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.71  E-value=1.4e-15  Score=123.63  Aligned_cols=193  Identities=17%  Similarity=0.169  Sum_probs=141.6

Q ss_pred             EeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CC
Q 022967           70 RLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EE  145 (289)
Q Consensus        70 ~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~  145 (289)
                      ..+...-..|..++.++||.+|++. ..+.|-++| .+|+.+.+.... ..|+ +|.+++||..||+|.+..|.|++ ++
T Consensus        55 ~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt  133 (353)
T COG4257          55 EFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKT  133 (353)
T ss_pred             eeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcc
Confidence            3333334679999999999999554 678888999 689988886554 5799 99999999999999888999999 66


Q ss_pred             C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceE
Q 022967          146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGV  223 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl  223 (289)
                      + ++.+..... ......+...+|++|+|||+...                  |--=|+||..+.++++. .....|+||
T Consensus       134 ~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi  194 (353)
T COG4257         134 LEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGI  194 (353)
T ss_pred             cceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcce
Confidence            6 766643211 11123456799999999999643                  22227888877777764 345679999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      +..|||. +|+++...+-|.++|....   ..+++..  .+....+.+-.|..|.+|++++..+-
T Consensus       195 ~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~  255 (353)
T COG4257         195 CATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS  255 (353)
T ss_pred             EECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce
Confidence            9999999 9999888889999986532   2233321  11233456888999999999987653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.70  E-value=3.4e-15  Score=147.45  Aligned_cols=191  Identities=14%  Similarity=0.220  Sum_probs=135.1

Q ss_pred             cCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeee-----------------cCcCccCeEEcC-CCcEEEEe
Q 022967           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLI-----------------GGDTLLGITTTQ-ENEILVCD  134 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~l~v~~  134 (289)
                      +..|.+|++|++|+ ||+++ .+++|.+++ .++.+..+...                 ...|. ++++++ +|.+||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            56799999998665 89877 567888888 45555544321                 23578 999998 67899998


Q ss_pred             CC-CceEEEe-CCC-eEEEEec-----cC-----CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEE
Q 022967          135 AD-KGLLKVT-EEG-VTVLASH-----VN-----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (289)
Q Consensus       135 ~~-~~i~~~~-~~g-~~~~~~~-----~~-----~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i  200 (289)
                      .+ +.|++++ .+| +..+...     ..     ...+..|.+|++++||. |||++..                 +++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence            76 5688888 566 5544321     00     12356799999999986 9999864                 4688


Q ss_pred             EEEeCCCCeEEEeeC----------------------CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceee-
Q 022967          201 LKYDPSLNETSILLD----------------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI-  257 (289)
Q Consensus       201 ~~~~~~~~~~~~~~~----------------------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~-  257 (289)
                      .++|++++....+..                      .+..|.|++++++|+ +||+++.+++|.+||.++........ 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            899887655433211                      145789999999998 99999999999999987643221110 


Q ss_pred             ----eec-----cCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          258 ----FVE-----NLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       258 ----~~~-----~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                          +.+     .....|.+|++|.+|++||+....+
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence                000     1113699999999999999986543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.69  E-value=4.5e-15  Score=131.73  Aligned_cols=172  Identities=20%  Similarity=0.265  Sum_probs=121.9

Q ss_pred             eEeccC-CcCCcceEEEccCCCEEEEec------------C-CeEEEEe-c--CCc---eEEeeeecCcCccCeEEcCCC
Q 022967           69 TRLGEG-ILNGPEDVCVDRNGVLYTATR------------D-GWIKRLH-K--NGT---WENWKLIGGDTLLGITTTQEN  128 (289)
Q Consensus        69 ~~~~~~-~~~~p~~l~~d~~g~l~v~~~------------~-g~i~~~~-~--~g~---~~~~~~~~~~p~~gl~~d~~g  128 (289)
                      +.+++. .+..|+.|++|++|+|||++.            . ++|++++ .  ||+   .+.+......|. ||++.++|
T Consensus         5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G   83 (367)
T TIGR02604         5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG   83 (367)
T ss_pred             EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence            344433 378999999999999998862            2 3899987 3  565   355666677899 99999888


Q ss_pred             cEEEEeCCCceEEEe-C--C----C-eEEEEeccCCc---cccCccceEEcCCCcEEEeeCCCccCcccc--ccccceec
Q 022967          129 EILVCDADKGLLKVT-E--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNW--GLDLLEAK  195 (289)
Q Consensus       129 ~l~v~~~~~~i~~~~-~--~----g-~~~~~~~~~~~---~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~--~~~~~~~~  195 (289)
                       |||++. ..|+++. .  +    + .+++.......   ..+.++++++++||.|||+.+.........  .....+..
T Consensus        84 -lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        84 -VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             -EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence             999975 5688884 2  2    2 34555544332   356789999999999999987421100000  00111223


Q ss_pred             CCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 022967          196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK  244 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~  244 (289)
                      ..+.|++++|++++++.++.++++|+|++|+++|+ +|++|.......+
T Consensus       162 ~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~  209 (367)
T TIGR02604       162 LGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCR  209 (367)
T ss_pred             cCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeE
Confidence            35789999999999999999999999999999887 8999875544443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.64  E-value=5e-14  Score=114.63  Aligned_cols=198  Identities=11%  Similarity=0.074  Sum_probs=140.7

Q ss_pred             cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCc----CccCeEEcCCCcEEEEeCCCceE
Q 022967           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGD----TLLGITTTQENEILVCDADKGLL  140 (289)
Q Consensus        66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~----p~~gl~~d~~g~l~v~~~~~~i~  140 (289)
                      .++++.+.+.-..|.+|.+++||..|+.+....|.|++ +++.+++|.....+    -. ...||+.|+||++....---
T Consensus        93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~G~yG  171 (353)
T COG4257          93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQIGAYG  171 (353)
T ss_pred             CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeeccccce
Confidence            35566666666789999999999999877655899999 57888888654433    23 67799999999997532234


Q ss_pred             EEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--C
Q 022967          141 KVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S  216 (289)
Q Consensus       141 ~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~  216 (289)
                      |+| ..+ ++++...    .-..+++|++.|||.+|++.-.                 ...|-++|+..+..+++..  .
T Consensus       172 rLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~  230 (353)
T COG4257         172 RLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNA  230 (353)
T ss_pred             ecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCc
Confidence            778 556 7766332    2347899999999999998542                 2468899998775555432  1


Q ss_pred             -CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccccC
Q 022967          217 -LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISN  288 (289)
Q Consensus       217 -~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~~  288 (289)
                       -....++-.++.++ +|+++.++.++.+||.....  ..+--.......|..+.+|+.|++|....+.+..+
T Consensus       231 ~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~agai~  300 (353)
T COG4257         231 LKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIG  300 (353)
T ss_pred             ccccccccccCccCc-EEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccCcee
Confidence             12223444566776 99999999999999976543  22222223334688899999999999887766544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.62  E-value=5.7e-14  Score=118.06  Aligned_cols=176  Identities=20%  Similarity=0.384  Sum_probs=124.6

Q ss_pred             CcceEEEc-cCCCEEEEecCCeEEEEe-cCCceEEeeee------cCcCccCeEEcCCCcEEEEeCCC---------ceE
Q 022967           78 GPEDVCVD-RNGVLYTATRDGWIKRLH-KNGTWENWKLI------GGDTLLGITTTQENEILVCDADK---------GLL  140 (289)
Q Consensus        78 ~p~~l~~d-~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~------~~~p~~gl~~d~~g~l~v~~~~~---------~i~  140 (289)
                      .|.+++++ ++|.+|++...+ +.+++ .+|+++.+...      ...|+ ++++|++|+||+++...         +++
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence            39999999 799999988755 55558 66777666543      23577 99999999999997532         389


Q ss_pred             EEeCCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeE---EEe
Q 022967          141 KVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SIL  213 (289)
Q Consensus       141 ~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~---~~~  213 (289)
                      +++.++ .+.+...     +..|++|++++||+ ||+++..                 .++|++++.+  ++++   +.+
T Consensus       119 ~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen  119 RIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCeEEEEecC-----cccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeE
Confidence            999667 6655443     46799999999995 8999865                 4789998875  3312   223


Q ss_pred             e---CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CC-CCEEEEEe
Q 022967          214 L---DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PD-GSFWIAIL  282 (289)
Q Consensus       214 ~---~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~-G~lwv~~~  282 (289)
                      .   .....|.|++++.+|+ ||++....++|++|+.+|..+...+  . . ...|.++++. ++ +.|||.+.
T Consensus       177 ~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~--~-p-~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  177 IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREIE--L-P-VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE----S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEEc--C-C-CCCEEEEEEECCCCCEEEEEeC
Confidence            2   2223599999999997 9999999999999998864222111  1 2 1478999983 33 58999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.57  E-value=2e-13  Score=119.41  Aligned_cols=159  Identities=23%  Similarity=0.307  Sum_probs=102.3

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEecCCce-EEeeee-------cCcCccCeEEcCC----CcEEEEeCC-------
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLI-------GGDTLLGITTTQE----NEILVCDAD-------  136 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~l~v~~~~-------  136 (289)
                      |..|++|++.|+|+||++...|+|++++.+|.. ..+...       ....+ |++++++    +.||++...       
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence            467999999999999999999999999977765 322221       23456 8999984    789987542       


Q ss_pred             --CceEEEe--CC-C----eEEEEeccCC--ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967          137 --KGLLKVT--EE-G----VTVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       137 --~~i~~~~--~~-g----~~~~~~~~~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                        ..|.|+.  .+ .    .+.+....+.  ...+....|+++|||.|||+.+....  ....++.  ....|.|+|+++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~~  155 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEET
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEecc
Confidence              2577776  22 1    2333333222  34566778999999999999876221  1111111  223578999998


Q ss_pred             CCC-------------eEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          206 SLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       206 ~~~-------------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      ++.             ..++++.++++|.+++|+|....||++|.+.
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            754             3466788899999999998855588888654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.53  E-value=7.6e-13  Score=105.48  Aligned_cols=190  Identities=17%  Similarity=0.257  Sum_probs=119.4

Q ss_pred             CCC-EEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCC--cEEEEeCCCceEEEeCCC----eEEEEe---ccCC
Q 022967           87 NGV-LYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVTEEG----VTVLAS---HVNG  156 (289)
Q Consensus        87 ~g~-l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g--~l~v~~~~~~i~~~~~~g----~~~~~~---~~~~  156 (289)
                      .+. +||....+.|+|+|...+...-....+.|..|..+--.|  ..|++..+.+....+-+|    ..++..   ..+.
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            345 558888999999983222111122223333355554232  355555454443333222    222211   2223


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~  236 (289)
                      ...+..++-.+||+|+.|.+.+.. ++      ..+|.. .|.+++.-+ +++++.+...+..+||++|+.|.+.+|+.|
T Consensus       106 ~kknR~NDgkvdP~Gryy~GtMad-~~------~~le~~-~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLEPI-GGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYID  176 (310)
T ss_pred             HHhcccccCccCCCCceeeeeecc-cc------cccccc-ccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEc
Confidence            334566788999999999988752 11      122221 244555544 588888888899999999999999999999


Q ss_pred             CCCCeE--EEEEecCCCCcceeeeec--c----CCCCCCceeeCCCCCEEEEEeCcc
Q 022967          237 TFKFRC--LKYWLKGESKEQTEIFVE--N----LPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       237 ~~~~~i--~~~~~~~~~~~~~~~~~~--~----~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      +.+..|  +.||..+..+.+....++  +    .+-.|||+++|.+|+|||++++|+
T Consensus       177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG  233 (310)
T ss_pred             cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence            999999  555576655554443332  1    224799999999999999999876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=8.3e-12  Score=110.07  Aligned_cols=201  Identities=17%  Similarity=0.230  Sum_probs=126.6

Q ss_pred             cccceeEeccCCcCCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEEee--------------eecCcCccCeEEc
Q 022967           64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--------------LIGGDTLLGITTT  125 (289)
Q Consensus        64 ~~~~~~~~~~~~~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~~~--------------~~~~~p~~gl~~d  125 (289)
                      .+..+...... -..|..++++++|+ ||++. ..|.|..++  .+|.+....              .....|+ .+.++
T Consensus        75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~  152 (345)
T PF10282_consen   75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS  152 (345)
T ss_dssp             EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred             eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence            44455555533 36899999999776 66777 567787776  557544321              1224577 89999


Q ss_pred             CCCc-EEEEeCC-CceEEEe--C-CC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCC
Q 022967          126 QENE-ILVCDAD-KGLLKVT--E-EG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHG  198 (289)
Q Consensus       126 ~~g~-l~v~~~~-~~i~~~~--~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g  198 (289)
                      ++|+ +|+++.+ ..|+.++  . .+ +..... ..-.....|+.+++.||| .+|+.....               ..-
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---------------~~v  216 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNELS---------------NTV  216 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETTT---------------TEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCCC---------------CcE
Confidence            9986 8888876 4566665  2 33 433221 122234579999999998 588886531               112


Q ss_pred             EEEEEeCCCCeEEEee------C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCCCCCC
Q 022967          199 KLLKYDPSLNETSILL------D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLPGGPD  267 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~------~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~p~  267 (289)
                      .++.++..++.++...      .   +...+.+|+++|||++||+++++.+.|..|+++..  .+....... .....|+
T Consensus       217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr  295 (345)
T PF10282_consen  217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPR  295 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEE
T ss_pred             EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCcc
Confidence            3455664456554431      1   12368899999999999999999999999999542  333322222 2235699


Q ss_pred             ceeeCCCCC-EEEEEeC
Q 022967          268 NIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       268 ~i~~d~~G~-lwv~~~~  283 (289)
                      ++++|++|+ |||+...
T Consensus       296 ~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEE-TTSSEEEEEETT
T ss_pred             EEEEeCCCCEEEEEecC
Confidence            999999996 6777644

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.41  E-value=7.5e-11  Score=105.65  Aligned_cols=170  Identities=19%  Similarity=0.208  Sum_probs=113.4

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEec-CCeEEEEecC-CceEEe------e-e-ecCcCccCeEEcCC-------Cc
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWENW------K-L-IGGDTLLGITTTQE-------NE  129 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~~-g~~~~~------~-~-~~~~p~~gl~~d~~-------g~  129 (289)
                      +++.+.++ +..|++|++.++|++|++.. .|+|++++.+ +.....      . . ..+..+ ||+++++       +.
T Consensus        21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            35667777 89999999999999999997 5999999843 332211      1 1 235567 9999865       35


Q ss_pred             EEEEe----------CCCceEEEe-C-C-C----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccC------ccc
Q 022967          130 ILVCD----------ADKGLLKVT-E-E-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG------LHN  186 (289)
Q Consensus       130 l~v~~----------~~~~i~~~~-~-~-g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~------~~~  186 (289)
                      ||++-          ....|.|+. . + .    .+.+....+....|.-..|+++|||.|||+.+..-..      ...
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            88873          124577775 2 2 1    2344433333345667789999999999987763110      000


Q ss_pred             cccc------c---ceecCCCEEEEEeCCCC-----------eEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          187 WGLD------L---LEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       187 ~~~~------~---~~~~~~g~i~~~~~~~~-----------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      ..+.      .   -.....|.|+|+++++.           ..++++.++++|.|++|+|+++ ||++|.+.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp  250 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP  250 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence            0000      0   01124679999999853           2367888999999999999766 99999765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.3e-10  Score=99.74  Aligned_cols=146  Identities=16%  Similarity=0.247  Sum_probs=105.6

Q ss_pred             CcCCcceEEEccCCCEEEEecC------------CeEEEEecCCceEEeeee-cCcCccCeEEcCCC-cEEEEeCC-Cce
Q 022967           75 ILNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDAD-KGL  139 (289)
Q Consensus        75 ~~~~p~~l~~d~~g~l~v~~~~------------g~i~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~l~v~~~~-~~i  139 (289)
                      ....|.++.++++|++|+++..            |.|++++++|...+.... ...|+ ||+|++|| .+|++|.. +.+
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence            3678999999999999988743            569999987877766655 67789 99999999 69999976 678


Q ss_pred             EEEe-C--CC-e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE
Q 022967          140 LKVT-E--EG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (289)
Q Consensus       140 ~~~~-~--~g-~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  212 (289)
                      ++++ +  ++ +   ..... ... .-..|.++++|.+|++|++...                ..++|.+++|++.....
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~-~~~-~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~  249 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVD-FDE-EPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGE  249 (307)
T ss_pred             EEEecCcccCccCCcceEEE-ccC-CCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEE
Confidence            8887 3  23 1   11111 111 1236899999999999975432                12489999999555555


Q ss_pred             eeCCCCCcceEEE-ecCCCEEEEEeCCC
Q 022967          213 LLDSLFFANGVAL-SKDEDYLVVCETFK  239 (289)
Q Consensus       213 ~~~~~~~p~gl~~-~~d~~~l~v~~~~~  239 (289)
                      +.-....|...+| .++.+.|||+....
T Consensus       250 i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         250 IKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EECCCCCCccceEeCCCcCEEEEEecCC
Confidence            5444466677777 46788999997654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.34  E-value=6.2e-10  Score=97.63  Aligned_cols=187  Identities=12%  Similarity=0.108  Sum_probs=115.3

Q ss_pred             CCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEE-ee--eecCcCccCeEEcCCCc-EEEEeCC-CceEEEe--CC
Q 022967           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWEN-WK--LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~-~~--~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~--~~  145 (289)
                      ..|..++++++|+ ||++. .++.|..++  .+|.... ..  .....|+ +++++++|+ +|+++.+ +.|..++  .+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            4689999999886 66665 568888887  3454321 11  1224578 999999885 7788765 4566666  33


Q ss_pred             C-eEEEE-eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEE--EeCCCCeEEEee------
Q 022967          146 G-VTVLA-SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSLNETSILL------  214 (289)
Q Consensus       146 g-~~~~~-~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~~~~~~------  214 (289)
                      | +.... ..........|++++++|||+ +|+++..                 .+.|..  ++..+++.+.+.      
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            5 42110 000001124688999999985 7787642                 244544  443344443321      


Q ss_pred             C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCceeeCCCC-CEEEEEe
Q 022967          215 D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDG-SFWIAIL  282 (289)
Q Consensus       215 ~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~  282 (289)
                      .   +...+.+++++||++++|+++...+.|..|+++.+.. ....... .....|.++.++.+| .+|++..
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEc
Confidence            1   1234557899999999999988889999998864321 1111111 112468999999999 5676654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.33  E-value=3.1e-10  Score=100.90  Aligned_cols=205  Identities=17%  Similarity=0.154  Sum_probs=121.9

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe-cC--C----ceEEeeeec--------CcCccCeEEcCCCcEEE
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KN--G----TWENWKLIG--------GDTLLGITTTQENEILV  132 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~--g----~~~~~~~~~--------~~p~~gl~~d~~g~l~v  132 (289)
                      ...+..+ +..|++|++.++| ||+++. .+|+++. .+  +    +.+.+....        ..++ ++++++||.||+
T Consensus        64 ~~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LYv  139 (367)
T TIGR02604        64 SNVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLYF  139 (367)
T ss_pred             eEEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEEE
Confidence            3444444 7889999999888 999764 4588884 32  2    444443321        2266 999999999999


Q ss_pred             EeCC--------------------CceEEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccc
Q 022967          133 CDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (289)
Q Consensus       133 ~~~~--------------------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~  190 (289)
                      +...                    .+++++++++  ++++..     .+..+++++++++|.+|+++....  .......
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i~~  212 (367)
T TIGR02604       140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRVTP  212 (367)
T ss_pred             ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEEcc
Confidence            7541                    2488888555  665532     356799999999999999986421  0000000


Q ss_pred             cceecCCCEEEE-----EeCCCC---eE---------------EEeeCCCCCcceEEEec-------CCCEEEEEeCCCC
Q 022967          191 LLEAKPHGKLLK-----YDPSLN---ET---------------SILLDSLFFANGVALSK-------DEDYLVVCETFKF  240 (289)
Q Consensus       191 ~~~~~~~g~i~~-----~~~~~~---~~---------------~~~~~~~~~p~gl~~~~-------d~~~l~v~~~~~~  240 (289)
                      +.+....+..+.     .++..+   +.               .........|.|+++..       -.+.+++++...+
T Consensus       213 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~  292 (367)
T TIGR02604       213 VAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQ  292 (367)
T ss_pred             cccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCC
Confidence            000000000000     000000   00               00011223678888773       2344899999999


Q ss_pred             eEEEEEec--CCCCcce-eeeeccCC--CCCCceeeCCCCCEEEEEeC
Q 022967          241 RCLKYWLK--GESKEQT-EIFVENLP--GGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       241 ~i~~~~~~--~~~~~~~-~~~~~~~~--~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +|.++.++  +...... ..|.....  ..|..+.++.||.|||+++.
T Consensus       293 ~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~  340 (367)
T TIGR02604       293 LIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY  340 (367)
T ss_pred             EEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence            99999886  3222211 23333222  47888999999999999954

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=3.2e-09  Score=89.78  Aligned_cols=188  Identities=17%  Similarity=0.236  Sum_probs=122.7

Q ss_pred             CCcceEEEccCCCEE-EEe-cCCeEEEEe--cCCceEEe----eeec---------CcCccCeEEcCCCc-EEEEeCC-C
Q 022967           77 NGPEDVCVDRNGVLY-TAT-RDGWIKRLH--KNGTWENW----KLIG---------GDTLLGITTTQENE-ILVCDAD-K  137 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~-~~g~i~~~~--~~g~~~~~----~~~~---------~~p~~gl~~d~~g~-l~v~~~~-~  137 (289)
                      ..|..+++|++|++. ++. ..|.|.++.  .+|.+...    ...+         ..++ ...++++++ |+++|-+ .
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            557899999999654 666 346666665  56754322    1111         1255 677889995 6677765 5


Q ss_pred             ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                      +++.++ .+| ++......- .+-..|+.|++.|+|. .|+...               .+.+-.++.|++..++++.+.
T Consensus       168 ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence            677777 677 544322111 2335799999999996 677653               223335677887767776542


Q ss_pred             ------C---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          215 ------D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       215 ------~---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                            +   +..+...|.+++||++||+++++.+.|..|.++..  .+.-. .........|+.+.++..|++.++..
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~~teg~~PR~F~i~~~g~~Liaa~  309 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GITPTEGQFPRDFNINPSGRFLIAAN  309 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEeccCCcCCccceeCCCCCEEEEEc
Confidence                  2   23444567899999999999999999998887642  22111 11212223599999999998888764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.27  E-value=3.3e-09  Score=93.62  Aligned_cols=190  Identities=16%  Similarity=0.264  Sum_probs=119.1

Q ss_pred             cCCcceEEEccCC-CEEEEec----CCeEEEEe--cC-CceEEeee---ecCcCccCeEEcCCCc-EEEEeCCCc-e--E
Q 022967           76 LNGPEDVCVDRNG-VLYTATR----DGWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKG-L--L  140 (289)
Q Consensus        76 ~~~p~~l~~d~~g-~l~v~~~----~g~i~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g~-l~v~~~~~~-i--~  140 (289)
                      ...|..|++++++ .||+...    .+.|..+.  .+ |+++.+..   .+..|. .++++++++ ||+++...+ +  +
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence            5789999999855 5786654    46887776  45 76665432   345678 899998885 788876543 4  4


Q ss_pred             EEeCCC-eEEEEecc------C---CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--
Q 022967          141 KVTEEG-VTVLASHV------N---GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--  207 (289)
Q Consensus       141 ~~~~~g-~~~~~~~~------~---~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--  207 (289)
                      .++.+| +.......      +   .....++..+.++|||+ +|+++..                 ..+|+.|+.+.  
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~  177 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT  177 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence            444567 43321110      1   11234677899999985 8888754                 34666665543  


Q ss_pred             CeEEE----eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC--CCCcceeeee---ccCC--CCCCceeeCCCCC
Q 022967          208 NETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG--ESKEQTEIFV---ENLP--GGPDNIKLAPDGS  276 (289)
Q Consensus       208 ~~~~~----~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~---~~~~--~~p~~i~~d~~G~  276 (289)
                      +++..    -......|..++|+||++++||++...+.|..|+.+.  ..+...+...   ....  ..|..|++++||+
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~  257 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR  257 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred             ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence            33433    2345678999999999999999999999999999883  2222222111   1111  2577799999995


Q ss_pred             -EEEEEeC
Q 022967          277 -FWIAILQ  283 (289)
Q Consensus       277 -lwv~~~~  283 (289)
                       +||+..+
T Consensus       258 ~lyvsnr~  265 (345)
T PF10282_consen  258 FLYVSNRG  265 (345)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEecc
Confidence             6777654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.26  E-value=4e-09  Score=92.49  Aligned_cols=197  Identities=9%  Similarity=0.118  Sum_probs=120.9

Q ss_pred             cccceeEeccCCcCCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEEee--eecCcCccCeEEcCCCc-EEEEeCC
Q 022967           64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD  136 (289)
Q Consensus        64 ~~~~~~~~~~~~~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-l~v~~~~  136 (289)
                      .+..+..+..+  ..|..++++++|+ ||++. .++.|..++  .+|+++...  ...+.|. +++++++|+ +|++...
T Consensus        24 ~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         24 ALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN  100 (330)
T ss_pred             ceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC
Confidence            33344444433  5688999999886 67765 567787666  356554332  2235688 999999986 7777643


Q ss_pred             -CceEEEe--CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeE
Q 022967          137 -KGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET  210 (289)
Q Consensus       137 -~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~  210 (289)
                       +.+..++  .+| .........+  ...+.+++++|+|+ +|+++..                 .+.|..+|.++ +.+
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l  161 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL  161 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence             4455555  455 3221111111  23577889999985 7777643                 35666666543 322


Q ss_pred             EE------eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeee---cc--CCCCCCceeeCCCCC-
Q 022967          211 SI------LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFV---EN--LPGGPDNIKLAPDGS-  276 (289)
Q Consensus       211 ~~------~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~---~~--~~~~p~~i~~d~~G~-  276 (289)
                      ..      -......|.+++|+||++++|+++...+.|..|+++..  ++.......   ..  .+..+..+.++++|+ 
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            11      11224568999999999999999998899999998732  221111111   00  112344588889885 


Q ss_pred             EEEEEe
Q 022967          277 FWIAIL  282 (289)
Q Consensus       277 lwv~~~  282 (289)
                      +|++..
T Consensus       242 lyv~~~  247 (330)
T PRK11028        242 LYACDR  247 (330)
T ss_pred             EEEecC
Confidence            677754

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.26  E-value=1.1e-09  Score=105.14  Aligned_cols=198  Identities=17%  Similarity=0.234  Sum_probs=128.5

Q ss_pred             ccccceeEeccCCcCCcceEEEcc-CCCEEEEec-CCeEEEEe-c-----CCceEEeee----------ec---------
Q 022967           63 SDIQSVTRLGEGILNGPEDVCVDR-NGVLYTATR-DGWIKRLH-K-----NGTWENWKL----------IG---------  115 (289)
Q Consensus        63 ~~~~~~~~~~~~~~~~p~~l~~d~-~g~l~v~~~-~g~i~~~~-~-----~g~~~~~~~----------~~---------  115 (289)
                      ..+..+-++......+-..+|++| +|.||+++. ..+|+|+. .     .++++.++.          .|         
T Consensus       393 g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA  472 (1899)
T KOG4659|consen  393 GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDA  472 (1899)
T ss_pred             CceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccc
Confidence            334444444433234556699999 999999884 46799886 1     223444321          12         


Q ss_pred             --CcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEecc---------------CCccccCccceEEcC-CCcEEEe
Q 022967          116 --GDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHV---------------NGSRINLADDLIAAT-DGSIYFS  176 (289)
Q Consensus       116 --~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~~~-dG~lyv~  176 (289)
                        ..|. ||++|++|.||++|. ..|..+|.+| ++.+....               ..-.+..|.+|+++| |+.|||-
T Consensus       473 ~L~~Pk-GIa~dk~g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vl  550 (1899)
T KOG4659|consen  473 QLIFPK-GIAFDKMGNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVL  550 (1899)
T ss_pred             eeccCC-ceeEccCCcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEe
Confidence              2588 999999999999995 7788899888 76654321               112456899999999 8999999


Q ss_pred             eCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---------------------CCCCCcceEEEecCCCEEEEE
Q 022967          177 VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---------------------DSLFFANGVALSKDEDYLVVC  235 (289)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---------------------~~~~~p~gl~~~~d~~~l~v~  235 (289)
                      |..                   -|+++++. +++.+.+                     ..+..+..++++++|. |||+
T Consensus       551 d~n-------------------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyva  609 (1899)
T KOG4659|consen  551 DTN-------------------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVA  609 (1899)
T ss_pred             ecc-------------------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEE
Confidence            853                   45666554 3333221                     1134467889999997 9999


Q ss_pred             eCCCCeEEEEEe---cCC------CCcce--eeee--c-----------cCCCCCCceeeCCCCCEEEEEeC
Q 022967          236 ETFKFRCLKYWL---KGE------SKEQT--EIFV--E-----------NLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       236 ~~~~~~i~~~~~---~~~------~~~~~--~~~~--~-----------~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++..++|.+...   +|.      ....+  ..-.  +           ..-+.|..+++.+||.++||+.+
T Consensus       610 EsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g  681 (1899)
T KOG4659|consen  610 ESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG  681 (1899)
T ss_pred             eccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence            998877766543   221      00111  0000  0           01135888999999999999864

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1e-09  Score=96.27  Aligned_cols=169  Identities=15%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEEecC-CeEEEEecCC--------ceEEee----------------eecCcCccCe
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENWK----------------LIGGDTLLGI  122 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~~~-g~i~~~~~~g--------~~~~~~----------------~~~~~p~~gl  122 (289)
                      ++.+..+ ++.|..++..++|.+.+.... |.+..+...+        ......                .....++ ++
T Consensus        59 ~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~  136 (399)
T COG2133          59 VEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GI  136 (399)
T ss_pred             ccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EE
Confidence            4555667 899999999999966676655 7666654211        111111                1112344 55


Q ss_pred             EEcCCCcEEEEeCCCceEEEe-CCC----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcc--ccc---cccc
Q 022967          123 TTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH--NWG---LDLL  192 (289)
Q Consensus       123 ~~d~~g~l~v~~~~~~i~~~~-~~g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~--~~~---~~~~  192 (289)
                      ++. .+.+|+++. ..+.+++ .+.    ..++....++..+|+...|+++|||+||++.++......  +..   ..++
T Consensus       137 a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~  214 (399)
T COG2133         137 SEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVL  214 (399)
T ss_pred             Eee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccccee
Confidence            553 345666654 4466676 222    344445556555788899999999999999876311100  111   1122


Q ss_pred             eecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       193 ~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      +... ..++..|.++...++++.++++|+|++|+|..+.||+++.+...
T Consensus       215 r~~~-a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~  262 (399)
T COG2133         215 RIDR-AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDA  262 (399)
T ss_pred             eecc-CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCc
Confidence            2222 34566666666677889999999999999986779999987633

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=4.2e-08  Score=87.64  Aligned_cols=181  Identities=18%  Similarity=0.207  Sum_probs=126.3

Q ss_pred             cCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC---CceEEEe-CCC-
Q 022967           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD---KGLLKVT-EEG-  146 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~---~~i~~~~-~~g-  146 (289)
                      ...|.++++.+.|. +|+.+ .++.|..++ ..-+.......+..|. ++++++++ .+||++..   +.+..+| ..+ 
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            37799999998665 99776 458899998 3333333344445899 99999887 79999973   4588888 444 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-----eeCCCCCc
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFA  220 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-----~~~~~~~p  220 (289)
                      +.....  .+   ..|.+++++|+|. +|+++..                 .+.|..+|.++.....     .......|
T Consensus       152 ~~~~~~--vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P  209 (381)
T COG3391         152 VTATIP--VG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGP  209 (381)
T ss_pred             EEEEEe--cC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCC
Confidence            222211  21   1458999999996 9999843                 4788899977554442     13446789


Q ss_pred             ceEEEecCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          221 NGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      .+++++++++.+|+++..+  +.+.++|...........-. ... .|.+++++.+|..+...
T Consensus       210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEE
Confidence            9999999999999999987  68999987654332221112 222 68899999999655444

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.07  E-value=1e-08  Score=98.64  Aligned_cols=190  Identities=17%  Similarity=0.259  Sum_probs=126.9

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeec-C---cCccCeEEcC-CCcEEEEeCC-CceEEEe---C-C
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG-G---DTLLGITTTQ-ENEILVCDAD-KGLLKVT---E-E  145 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~-~---~p~~gl~~d~-~g~l~v~~~~-~~i~~~~---~-~  145 (289)
                      +..|-.+|..+||.||+++.+ .|.|+.++|++..+..-. .   ... -||+++ +|.|||++.. +.|+|+.   + +
T Consensus       364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d  441 (1899)
T KOG4659|consen  364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD  441 (1899)
T ss_pred             eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence            778999999999999999875 489998999877665432 2   233 588886 8899999876 5688885   1 1


Q ss_pred             --C-eEEEEec----------------cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC
Q 022967          146 --G-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (289)
Q Consensus       146 --g-~~~~~~~----------------~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  206 (289)
                        + .++++..                .....+.+|.||++|++|.|||+|+.                   .|-++|..
T Consensus       442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~  502 (1899)
T KOG4659|consen  442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT  502 (1899)
T ss_pred             cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence              2 4555421                01234678999999999999999865                   34455543


Q ss_pred             CCeEEEe--------------------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC------CCccee----
Q 022967          207 LNETSIL--------------------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE------SKEQTE----  256 (289)
Q Consensus       207 ~~~~~~~--------------------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~------~~~~~~----  256 (289)
                       |-+..+                    .-.+.+|..++++|=.+.|||-|+  +-|++++....      .-..+.    
T Consensus       503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~  579 (1899)
T KOG4659|consen  503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANA  579 (1899)
T ss_pred             -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCC
Confidence             222221                    112678999999996666999976  56666654322      000010    


Q ss_pred             -eeeccC-----CCCCCceeeCCCCCEEEEEeCccccCC
Q 022967          257 -IFVENL-----PGGPDNIKLAPDGSFWIAILQVFISNQ  289 (289)
Q Consensus       257 -~~~~~~-----~~~p~~i~~d~~G~lwv~~~~g~i~~~  289 (289)
                       .+...+     --.+..|++..+|.|||+-.++.=.||
T Consensus       580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNr  618 (1899)
T KOG4659|consen  580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINR  618 (1899)
T ss_pred             chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhh
Confidence             000000     024678999999999999887765554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.96  E-value=2.4e-07  Score=77.18  Aligned_cols=190  Identities=15%  Similarity=0.153  Sum_probs=105.5

Q ss_pred             cCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEe--CCC--
Q 022967           76 LNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVT--EEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~--~~g--  146 (289)
                      ...+.+|++++ .+.|| |.+..+.|+.++.+|++..-..  ..+-+- ||++-.+|.+.+++.. +.++.+.  .++  
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            45689999998 47799 6667899999998887543322  224466 8999877777777743 5576666  222  


Q ss_pred             eE-----EEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeC--CCCeEEEee----
Q 022967          147 VT-----VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILL----  214 (289)
Q Consensus       147 ~~-----~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~~~~----  214 (289)
                      +.     .+............-||+.|+. +++|++...               .+ .+|+.++.  .........    
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~---------------~P-~~l~~~~~~~~~~~~~~~~~~~~  163 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER---------------KP-KRLYEVNGFPGGFDLFVSDDQDL  163 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES---------------SS-EEEEEEESTT-SS--EEEE-HHH
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC---------------CC-hhhEEEccccCccceeecccccc
Confidence            21     1211222222335679999996 578887432               12 35777764  212222111    


Q ss_pred             ----CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---C---CCCCCceeeCCCCCEEEEEeC
Q 022967          215 ----DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN---L---PGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       215 ----~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~---~~~p~~i~~d~~G~lwv~~~~  283 (289)
                          .....+.+++++|..+.||+-...+++|..+|.+|.-.... .+...   +   -..|.||++|++|+|||..-.
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence                13556899999999999999988899999999776522211 11110   0   126899999999999999754

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.94  E-value=9.5e-07  Score=75.57  Aligned_cols=182  Identities=14%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             CCcceEEEccCCC-EEEE-ecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--eE
Q 022967           77 NGPEDVCVDRNGV-LYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VT  148 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~-~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~~  148 (289)
                      ..|.+++++++|. +|+. ..++.|..++ .+++..........+. .++++++|+ +|++... ..+..+| .++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            4578899999886 5654 4678899998 4555443222234466 788988886 6666543 4577777 444  33


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      .+..      ...+.+++++|||.+++....                ....++.+|.++++..........|..++++++
T Consensus       110 ~~~~------~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       110 EIPV------GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             EeeC------CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            2211      124678999999987665432                112355678766554332222345788999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeee-cc---CCCCCCceeeCCCCCE-EEEE
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-EN---LPGGPDNIKLAPDGSF-WIAI  281 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~---~~~~p~~i~~d~~G~l-wv~~  281 (289)
                      ++.||++....+.|..||+.+.+....-.+. ..   ....|.+++++++|+. |++.
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            9988887655688999998754321111110 00   1123567888888864 6654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=4e-07  Score=81.41  Aligned_cols=185  Identities=18%  Similarity=0.232  Sum_probs=127.0

Q ss_pred             CCcceEEEccCC-CEEEEecC-CeEEEEecC-CceEEeeeec-CcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--e
Q 022967           77 NGPEDVCVDRNG-VLYTATRD-GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--V  147 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~v~~~~-g~i~~~~~~-g~~~~~~~~~-~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~  147 (289)
                      ..|..++++++| .+|+.... +.+..++.. ...+.+...+ ..|. ++++.+.++ +|+.+.. +.+..++ ..-  .
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence            479999999987 78877633 345555422 1222222223 5678 999988775 9998755 5677787 322  2


Q ss_pred             EEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      ..+   ..+   ..|.+++++++| .+|+++...               ..+.+..+|..+++..........|.+++++
T Consensus       110 ~~~---~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~  168 (381)
T COG3391         110 GSI---PVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVD  168 (381)
T ss_pred             eEe---eec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEEC
Confidence            221   111   278899999988 799998641               2478999999877765554334468999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcc-eeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      |+++.+|+++...++|..++.++..... ...........|.+++++.+|+ +||....
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence            9999999999999999999976654331 1110113345799999999996 8888754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.89  E-value=2.1e-06  Score=73.40  Aligned_cols=177  Identities=15%  Similarity=0.114  Sum_probs=108.7

Q ss_pred             CCcceEEEccCCC-EEEEe-cCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--ceEEEe-CCC-eEE
Q 022967           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVT-EEG-VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--~i~~~~-~~g-~~~  149 (289)
                      ..+..++++++|+ +|++. .++.|..++. +++..........+. +++++++|.++++....  .+..++ .++ ...
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE-GMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc-eEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            3477889999876 66665 4688999984 333222122233467 99999999876654332  355567 444 221


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-ee-------CCCCCc
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LL-------DSLFFA  220 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~-------~~~~~p  220 (289)
                      ...  .+   ..+..+.++++|. +|++...                 .+.|..+|.++++... +.       .....|
T Consensus       152 ~~~--~~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  209 (300)
T TIGR03866       152 NVL--VD---QRPRFAEFTADGKELWVSSEI-----------------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQP  209 (300)
T ss_pred             EEE--cC---CCccEEEECCCCCEEEEEcCC-----------------CCEEEEEEcCcceeeeeeeecccccccccCCc
Confidence            111  11   2456789999996 5555321                 3678888887665322 11       112346


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE-EEE
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIA  280 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wv~  280 (289)
                      .+++++++++.+|++....+++.+||..+.+..  ...  .....+..+++.++|.. +++
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~--~~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL--LVGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE--EeCCCcceEEECCCCCEEEEE
Confidence            789999999999998777788999987643221  111  11245778888888864 444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.4e-06  Score=72.67  Aligned_cols=190  Identities=15%  Similarity=0.236  Sum_probs=116.9

Q ss_pred             cCCcceEEEccCC-CEEEEe-c--CCeEEEEe--c-CCceEEeee--ecC-cCccCeEEcCCCc-EEEEeCCCce---EE
Q 022967           76 LNGPEDVCVDRNG-VLYTAT-R--DGWIKRLH--K-NGTWENWKL--IGG-DTLLGITTTQENE-ILVCDADKGL---LK  141 (289)
Q Consensus        76 ~~~p~~l~~d~~g-~l~v~~-~--~g~i~~~~--~-~g~~~~~~~--~~~-~p~~gl~~d~~g~-l~v~~~~~~i---~~  141 (289)
                      +..|.-|++++++ .||+.. .  .|+|..+.  . +|+++.+..  ..+ .|. -+++|++|+ |++++...+.   +.
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            5789999999976 689665 3  56776554  3 477765532  223 346 899999996 5555544443   33


Q ss_pred             EeCCC-eEEEE---eccCC---cc--ccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          142 VTEEG-VTVLA---SHVNG---SR--INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       142 ~~~~g-~~~~~---~~~~~---~~--~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      +.++| +....   .....   .+  ..++....++|+|+ |++.|-+                 .-+|+.|+.+.|..+
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence            33567 33221   11111   11  12356678999995 5555533                 356777776656654


Q ss_pred             Ee----eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCC----C--CCCceeeCCCCCEEE
Q 022967          212 IL----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLP----G--GPDNIKLAPDGSFWI  279 (289)
Q Consensus       212 ~~----~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~----~--~p~~i~~d~~G~lwv  279 (289)
                      ..    ......|.-|+|+|+++..|+...-+++|.+|..++.  ++...+... .+|    +  ....|.+..||++..
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCCceeEEEECCCCCEEE
Confidence            33    2446778999999999999999888899988877653  222222211 122    1  122377899998766


Q ss_pred             EEeCc
Q 022967          280 AILQV  284 (289)
Q Consensus       280 ~~~~g  284 (289)
                      ++..+
T Consensus       260 asNRg  264 (346)
T COG2706         260 ASNRG  264 (346)
T ss_pred             EecCC
Confidence            66544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.80  E-value=6.8e-06  Score=68.50  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             cCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEee--eecCcCccCeEEcCCCcEEEEeCC-CceEEEe--CCC-e
Q 022967           76 LNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDAD-KGLLKVT--EEG-V  147 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~--~~g-~  147 (289)
                      ...-.++.++| +..|| +.+..-.|..++.+|++-...  .....|- +|+.-.+|.+.+++.. +.++.+.  ++. .
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            44567789998 45677 444556788888888754332  2234566 7887666666666643 3455554  444 2


Q ss_pred             EEEEe-----ccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-----CC
Q 022967          148 TVLAS-----HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----DS  216 (289)
Q Consensus       148 ~~~~~-----~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-----~~  216 (289)
                      ..+..     .....+...-.|++.++. +++||+-..               ++ -+||.++........-.     ..
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cEEEEEecCCcccccccccCcccc
Confidence            22211     111112345669999994 579998643               22 35777764322221110     00


Q ss_pred             ----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCccee------eeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          217 ----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTE------IFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       217 ----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                          +..-.|+.+++..+.|+|-...++.|..++.+|+..+...      .+-... ..+.||+.|++|+|||....+..
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~di-pqaEGiamDd~g~lYIvSEPnlf  306 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDI-PQAEGIAMDDDGNLYIVSEPNLF  306 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccC-CCcceeEECCCCCEEEEecCCcc
Confidence                2345788999888888887777789999998876322111      011122 25789999999999999866543

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.74  E-value=2.6e-07  Score=85.78  Aligned_cols=179  Identities=16%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             cceEEEcc-CCCEE-EEecCCeEEEEecCC-ce-EEeeeecCcCccCeEEcCCC-cEEEEeCCC-ceEEEeCCC--eEEE
Q 022967           79 PEDVCVDR-NGVLY-TATRDGWIKRLHKNG-TW-ENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKVTEEG--VTVL  150 (289)
Q Consensus        79 p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g-~~-~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~-~i~~~~~~g--~~~~  150 (289)
                      +-+|.+|- +..+| .+.....|.+...+| +. +.+......|- |||+|.-+ ++|.+|.-. .|-...-+|  .+++
T Consensus      1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvL 1105 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVL 1105 (1289)
T ss_pred             eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceeeEE
Confidence            34456665 33333 444555566665444 22 33345567888 99999655 699998642 222222345  3444


Q ss_pred             EeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d  228 (289)
                      ..    ..+..|++|++|+ .|+||++|=.               +.+-.|-+.+.|+...+++ -+++.-||||.|+|-
T Consensus      1106 f~----tdLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1106 FY----TDLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFDPF 1166 (1289)
T ss_pred             Ee----ecccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeCcc
Confidence            33    2345789999999 7799999832               2234566777775554444 467888999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .+.|-|+|.+++|+.....++.  +++.++ .++ .+|-+|.-+.+. +|-.+|
T Consensus      1167 s~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~L-qYPF~itsy~~~-fY~TDW 1215 (1289)
T KOG1214|consen 1167 SKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNL-QYPFSITSYADH-FYHTDW 1215 (1289)
T ss_pred             cceeeEEecCCcceeEecCCCC--cchhhh-hcc-cCceeeeecccc-ceeecc
Confidence            9999999999999999887764  222222 244 478888888775 666655

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.68  E-value=3.2e-06  Score=72.46  Aligned_cols=184  Identities=20%  Similarity=0.258  Sum_probs=105.8

Q ss_pred             ceEEEccCCCEEEEecC-------------CeEEEEe-cCCce-EEeeee------cCcCccCeEEcC-C-----CcEEE
Q 022967           80 EDVCVDRNGVLYTATRD-------------GWIKRLH-KNGTW-ENWKLI------GGDTLLGITTTQ-E-----NEILV  132 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~-------------g~i~~~~-~~g~~-~~~~~~------~~~p~~gl~~d~-~-----g~l~v  132 (289)
                      ..+.+|+.|+||+-+..             -+|+.+| .++++ ..+.-.      ..... .+++|. +     +.+|+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            46789999999964411             2789999 45543 333211      12233 677774 1     46999


Q ss_pred             EeCC-CceEEEe-CCC--eEEEEecc-----------CCcccc---CccceEEcC---CC-cEEEeeCCCccCccccccc
Q 022967          133 CDAD-KGLLKVT-EEG--VTVLASHV-----------NGSRIN---LADDLIAAT---DG-SIYFSVASTKFGLHNWGLD  190 (289)
Q Consensus       133 ~~~~-~~i~~~~-~~g--~~~~~~~~-----------~~~~~~---~~~~l~~~~---dG-~lyv~~~~~~~~~~~~~~~  190 (289)
                      +|.+ .+|+.+| .+|  .+++....           .+..+.   ...+++..+   || .||+...+           
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-----------  151 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-----------  151 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence            9987 5799999 777  33332211           111111   234556654   54 48887654           


Q ss_pred             cceecCCCEEEEEeCC---C----------CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC-Cccee
Q 022967          191 LLEAKPHGKLLKYDPS---L----------NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQTE  256 (289)
Q Consensus       191 ~~~~~~~g~i~~~~~~---~----------~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~~  256 (289)
                            ...+|++..+   .          ..++.+........|++++++|. ||+++...+.|.+++.+++- ..+.+
T Consensus       152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred             ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence                  1346665421   0          01222322224567899999776 99999999999999987632 12333


Q ss_pred             eeeccCC--CCCCceeeCC--CCCEEEEEe
Q 022967          257 IFVENLP--GGPDNIKLAP--DGSFWIAIL  282 (289)
Q Consensus       257 ~~~~~~~--~~p~~i~~d~--~G~lwv~~~  282 (289)
                      .......  .+|+++.++.  +|.||+-+.
T Consensus       225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             eeEEcCceeeccceeeeccccCceEEEEEC
Confidence            3433222  5899999999  999999875

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.62  E-value=6.7e-07  Score=80.28  Aligned_cols=197  Identities=18%  Similarity=0.231  Sum_probs=107.3

Q ss_pred             eEEEccCCCEEEEecCCeEEEEecCCc-eEEee--eecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccC
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLHKNGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN  155 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~~~g~-~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~  155 (289)
                      .++.|.+|+||+++..| |++.++.|. +....  .+.+... -+..|.+|++|++.. +|+++.. +++ +... ....
T Consensus       210 al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~-~~~~  285 (671)
T COG3292         210 ALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIP-LSKM  285 (671)
T ss_pred             HHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCcccc-cccc
Confidence            46677789999999877 888876661 21111  1123344 677789999999985 7888887 554 3322 1112


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCc--cCcccccc------------------------ccceecCCCEEEEEeCCCCe
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTK--FGLHNWGL------------------------DLLEAKPHGKLLKYDPSLNE  209 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~--~~~~~~~~------------------------~~~~~~~~g~i~~~~~~~~~  209 (289)
                      ..+....+++..|.||.+|+++....  +...++..                        .+......|-+...++.+|.
T Consensus       286 ~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~  365 (671)
T COG3292         286 HLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGE  365 (671)
T ss_pred             CCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCc
Confidence            23445668999999999999876522  11111110                        00011111222333333333


Q ss_pred             EEEeeCCC--CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC-CCCceeeCCCCCEEEEEeCcc
Q 022967          210 TSILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG-GPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       210 ~~~~~~~~--~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .-......  .+..-..++.+++ +|+..+ ++++.+++....... .. -..+++. ...-|..|.++++||++..|-
T Consensus       366 ~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~-q~GLsrl~n~n~~av-ld-e~agl~ss~V~aived~dnsLWIGTs~Gl  440 (671)
T COG3292         366 LVRSVHQLRGMNITTTLEDSRGR-LWLGSM-QNGLSRLDNKNEWAV-LD-EDAGLPSSEVSAIVEDPDNSLWIGTSGGL  440 (671)
T ss_pred             EEEEeeeccccccchhhhccCCc-EEEEec-ccchhhhccCCcccc-cc-cccCCcccceeeeeecCCCCEEEeccCCe
Confidence            22111111  2233345555555 888854 468888875431110 00 0112222 223477899999999997653

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.57  E-value=8.1e-06  Score=68.97  Aligned_cols=192  Identities=12%  Similarity=0.081  Sum_probs=117.0

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEE---e---c----CCceEEee-------eecCcCccCeEEcCCCcEEEEeCC-C
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRL---H---K----NGTWENWK-------LIGGDTLLGITTTQENEILVCDAD-K  137 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~---~---~----~g~~~~~~-------~~~~~p~~gl~~d~~g~l~v~~~~-~  137 (289)
                      +..|++++..+ ++||+++... |+++   +   .    .+......       .+.-..+ .|++ .++.+|+.+.. +
T Consensus        48 F~r~MGl~~~~-~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~fS  123 (335)
T TIGR03032        48 FPRPMGLAVSP-QSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLFS  123 (335)
T ss_pred             cCccceeeeeC-CeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcce
Confidence            78999999975 5899987644 8888   3   1    12221111       1111345 7888 56788887754 5


Q ss_pred             ceEEEeCCC-eEEE-----EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          138 GLLKVTEEG-VTVL-----ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       138 ~i~~~~~~g-~~~~-----~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      .+..+++.. +.+.     +.......-=+.|||+.....--||+.-+.    .+-...=-+.+..|+++ +|..++  +
T Consensus       124 CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~----sD~~~gWR~~~~~gG~v-idv~s~--e  196 (335)
T TIGR03032       124 CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQ----SDVADGWREGRRDGGCV-IDIPSG--E  196 (335)
T ss_pred             eEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeec----cCCcccccccccCCeEE-EEeCCC--C
Confidence            677777544 3332     222221222257899997544578775431    11110111222344443 565544  4


Q ss_pred             EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          212 ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       212 ~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ++.+++..|.+-.|. +|+ ||+.|++.+.+.++|.++.   ..+.. ...+++|+||... ...++|++...+
T Consensus       197 vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~G---~~e~V-a~vpG~~rGL~f~-G~llvVgmSk~R  263 (335)
T TIGR03032       197 VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQAG---KFQPV-AFLPGFTRGLAFA-GDFAFVGLSKLR  263 (335)
T ss_pred             EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCCC---cEEEE-EECCCCCccccee-CCEEEEEecccc
Confidence            577999999998887 455 9999999999999997632   23333 3567899999998 235567776655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.55  E-value=7.8e-06  Score=72.63  Aligned_cols=164  Identities=16%  Similarity=0.202  Sum_probs=98.2

Q ss_pred             eeEeccCCcCCcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT  143 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~  143 (289)
                      +.+++.+. .-+..+++.+||+ +|+.+.+|.|.++| .+++...-...+..|. |+++.+||+ +|+++.. +.+..+|
T Consensus        29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEec
Confidence            44555442 2244567788876 78888899999999 5666555556677899 999999997 6666543 5677888


Q ss_pred             -CCC--eEEEEec-cCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCC
Q 022967          144 -EEG--VTVLASH-VNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDS  216 (289)
Q Consensus       144 -~~g--~~~~~~~-~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~  216 (289)
                       .+.  ++.+... ... ..-....+|...+....|+....                ..+.|+.+|....+  ......-
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE-
T ss_pred             cccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecc
Confidence             444  4433221 111 11123446777777765654322                35789999865332  2223344


Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ..+|....++|++++++++....+.|..+|...
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             cccccccccCcccceeeecccccceeEEEeecc
Confidence            578899999999999999877778888888654

...

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.54  E-value=5.7e-06  Score=70.91  Aligned_cols=145  Identities=15%  Similarity=0.198  Sum_probs=89.8

Q ss_pred             CeEEcCCCcEEEEeCCC-------------ceEEEe-CCC--eEEEEec-cCCccccCccceEEcC-C-----CcEEEee
Q 022967          121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVLASH-VNGSRINLADDLIAAT-D-----GSIYFSV  177 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~-------------~i~~~~-~~g--~~~~~~~-~~~~~~~~~~~l~~~~-d-----G~lyv~~  177 (289)
                      ++.+|+.|+|||.|.+.             .|+.+| .++  ++.+.-. ..-.+....+++.+|. +     +.+|++|
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            78899999999998652             488889 555  4444321 1111334677898887 2     5799999


Q ss_pred             CCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--------------------CCcceEEEec---CCCEEEE
Q 022967          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--------------------FFANGVALSK---DEDYLVV  234 (289)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--------------------~~p~gl~~~~---d~~~l~v  234 (289)
                      .+                 .++|+.||..+++...+..+.                    ....|++.++   ++++||+
T Consensus        85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            76                 247888888776655443221                    1245677766   8899999


Q ss_pred             EeCCCCeEEEEEec---CCCCcc-------eeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          235 CETFKFRCLKYWLK---GESKEQ-------TEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       235 ~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      .-....+++++..+   ......       .+.+. ..++..+++++|++|++|.+...
T Consensus       148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~  205 (287)
T PF03022_consen  148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE  205 (287)
T ss_dssp             EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC
T ss_pred             EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC
Confidence            99888899998753   222211       12222 22245688999999999999764

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.50  E-value=2.4e-05  Score=72.46  Aligned_cols=186  Identities=13%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             cCCcceEEEccCCCEE-EEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eE
Q 022967           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VT  148 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~  148 (289)
                      +..-.+++..|||.+. ++..+|+|..|+ ..|. +.+|.+...... ++.|...|+..++..-. .+..+| ...  ++
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            4456678999999877 667889999998 4554 334444334444 89999999888775444 455566 554  66


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~  227 (289)
                      .+....    -.....+++||.|.|.++....                .=.|+.++.++|+..-+..|...| .+++|++
T Consensus       429 Tft~P~----p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  429 TFTSPE----PIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             eecCCC----ceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence            654321    1345689999999988875431                225888888889887777776666 5789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCccc
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVFI  286 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~i  286 (289)
                      ++. +.++-+..++|.+|++-+.+ +..+.+.  ...-..++++-++| .+-|++.+|-|
T Consensus       489 ~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  489 DGS-LLASGSWDKTVRIWDIFSSS-GTVETLE--IRSDVLAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             ccC-eEEeccccceEEEEEeeccC-ceeeeEe--eccceeEEEEcCCCCeEEEEEecceE
Confidence            999 66677888999999985431 1222221  11223345555666 56666665543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.50  E-value=2e-05  Score=70.03  Aligned_cols=169  Identities=14%  Similarity=0.190  Sum_probs=97.7

Q ss_pred             CCEE-EEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC--eEEEEeccCCcccc
Q 022967           88 GVLY-TAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRIN  160 (289)
Q Consensus        88 g~l~-v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~  160 (289)
                      ++|+ |.. .+|.|..+| .+.+.......++.++.++.+.+||+ +|+++....+..+| .++  +..+..   +   .
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~   78 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---G---G   78 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---S
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---C---C
Confidence            3454 555 578999998 34444333333344442678888885 89988766788888 555  443321   1   3


Q ss_pred             CccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C-------CCCcceEEEecCCCE
Q 022967          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S-------LFFANGVALSKDEDY  231 (289)
Q Consensus       161 ~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~-------~~~p~gl~~~~d~~~  231 (289)
                      .+.++++++||+ +|++...                 .+.+..+|.++.+...... +       .....++..++....
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             CcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence            578999999996 6666532                 3678889987655432211 1       112346777788876


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ++++-....+|+.+|....+.... ..+ ....+|.+..+|++|+++++.
T Consensus       142 fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             EEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEE
T ss_pred             EEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeec
Confidence            666667778999998765321111 122 334678899999999776553

...

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.49  E-value=1e-05  Score=65.30  Aligned_cols=140  Identities=18%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             cceEEEccCCCEEEEe-c---------CCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC-Cce--EEEe-
Q 022967           79 PEDVCVDRNGVLYTAT-R---------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGL--LKVT-  143 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~---------~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~-~~i--~~~~-  143 (289)
                      -.+--+||+|+.|.++ +         .|.++++-..++++.+....+.++ ||++|.+- .+|+.|.- ..+  +.+| 
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~  189 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDC  189 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCC
Confidence            3344678899999875 1         244555557778877777778899 99999765 58888754 346  5556 


Q ss_pred             CCC-e---EEEEec--cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCC
Q 022967          144 EEG-V---TVLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDS  216 (289)
Q Consensus       144 ~~g-~---~~~~~~--~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~  216 (289)
                      +.| +   +.+.+-  ........|.++++|.+|+|||+.-.                 .++|+++||.+|++..- .-.
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklP  252 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLP  252 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcC
Confidence            666 2   233221  12222346899999999999999754                 47899999998875432 111


Q ss_pred             CCCcceEEEe-cCCCEEEEEe
Q 022967          217 LFFANGVALS-KDEDYLVVCE  236 (289)
Q Consensus       217 ~~~p~gl~~~-~d~~~l~v~~  236 (289)
                      .......+|. ++-+.+|++.
T Consensus       253 t~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  253 TPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCceEEEEecCCCccEEEEEe
Confidence            2223444553 3334567764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.47  E-value=2.4e-05  Score=70.58  Aligned_cols=166  Identities=18%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             eEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeC-CC-eEEEEe--c-cCCccccCccceEEcCC-------CcEE
Q 022967          108 WENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTE-EG-VTVLAS--H-VNGSRINLADDLIAATD-------GSIY  174 (289)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~-~g-~~~~~~--~-~~~~~~~~~~~l~~~~d-------G~ly  174 (289)
                      .+++......|. +|++.+||++||++.. .+|++++. ++ .+.+..  . ........+.+|+++|+       +.||
T Consensus        22 ~~~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        22 KKVLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEEEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence            345566677899 9999999999999974 67888873 34 333221  1 11112456779999876       3689


Q ss_pred             EeeCCCccCccccccccceecCCCEEEEEeCCC--Ce---EEEeeCC-----CCCcceEEEecCCCEEEEEeCCC-----
Q 022967          175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NE---TSILLDS-----LFFANGVALSKDEDYLVVCETFK-----  239 (289)
Q Consensus       175 v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~---~~~~~~~-----~~~p~gl~~~~d~~~l~v~~~~~-----  239 (289)
                      ++-....-.        -+.....+|.|+..+.  ..   .+.+...     ..+-..|+|+|||+ |||+--..     
T Consensus       101 vsyt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~  171 (454)
T TIGR03606       101 ISYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG  171 (454)
T ss_pred             EEEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc
Confidence            874321000        0000134677765431  11   1222222     23345689999997 99853221     


Q ss_pred             ---------------------------CeEEEEEecCCCCc--------ceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          240 ---------------------------FRCLKYWLKGESKE--------QTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       240 ---------------------------~~i~~~~~~~~~~~--------~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                                                 .+|.|++.+|.-..        ..+++.-.+ -.|-++++|++|.||++.++.
T Consensus       172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp  250 (454)
T TIGR03606       172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP  250 (454)
T ss_pred             ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence                                       25788887763110        123333222 247889999999999998754

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.46  E-value=2.3e-06  Score=58.89  Aligned_cols=81  Identities=25%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             ceEEcCCCcEEEeeCCCccCcccccc--ccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          164 DLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       164 ~l~~~~dG~lyv~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      +|+.-....+|++...  +....++.  +..-+.+-+.++.||+  ++...+++++..||||+++|+++.|||++...+.
T Consensus         2 DIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    2 DIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            3433333367777654  22122221  2223334577888997  4677889999999999999999999999999999


Q ss_pred             EEEEEec
Q 022967          242 CLKYWLK  248 (289)
Q Consensus       242 i~~~~~~  248 (289)
                      |.+|...
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            9999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.44  E-value=2.7e-06  Score=73.50  Aligned_cols=136  Identities=14%  Similarity=0.193  Sum_probs=91.5

Q ss_pred             CCcceEEEccCC-CEEEEecCCeEEEEecCCceE-Eeee-ecC----cCccCeEEcCCCcEEEEeCCC------------
Q 022967           77 NGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTWE-NWKL-IGG----DTLLGITTTQENEILVCDADK------------  137 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~v~~~~g~i~~~~~~g~~~-~~~~-~~~----~p~~gl~~d~~g~l~v~~~~~------------  137 (289)
                      .+|-+|+++..| +||++++.=+++++++.|... .... ..+    ..+ ++.++++|.+|++|...            
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~l  193 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAAL  193 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEeee
Confidence            468899999955 999999887799999666443 2222 122    245 88899999999997532            


Q ss_pred             ------ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          138 ------GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       138 ------~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                            +++++| .+. .+++.     ..+.++||++.++|+.+ .++...                 ..+|.||-.++.
T Consensus       194 ~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~  251 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGP  251 (376)
T ss_pred             cCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCC
Confidence                  233443 112 22222     24578999999999964 445433                 357888776544


Q ss_pred             eE---EEeeCC-CCCcceEEEecCCCEEEEEe
Q 022967          209 ET---SILLDS-LFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       209 ~~---~~~~~~-~~~p~gl~~~~d~~~l~v~~  236 (289)
                      +.   ++++.+ ..+|.-|..+.+|+ +||+-
T Consensus       252 k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal  282 (376)
T KOG1520|consen  252 KAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL  282 (376)
T ss_pred             ccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence            43   777774 45788888888887 78775

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00016  Score=66.15  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             eEEEccCCC-EE-EEecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967           81 DVCVDRNGV-LY-TATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (289)
Q Consensus        81 ~l~~d~~g~-l~-v~~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~  149 (289)
                      ...+.|||+ |+ +...+  ..|+.++ ..|+...+....+... ..++.+||+ |+++ +..  ..|+.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            457888886 43 44333  3688888 4455544433333344 678889986 6554 322  2488888 556 555


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +....     .......+.|||+ |+++...               .....||++|.++++.+.+........+.+|+||
T Consensus       301 lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            43211     1234568899985 6665321               1234799999987776655322223345689999


Q ss_pred             CCEEEEEeCC--CCeEEEEEecCC
Q 022967          229 EDYLVVCETF--KFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~--~~~i~~~~~~~~  250 (289)
                      |+.++++...  ...|+++|+++.
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCC
Confidence            9999887553  346788887764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.36  E-value=1.8e-05  Score=69.47  Aligned_cols=157  Identities=18%  Similarity=0.277  Sum_probs=92.9

Q ss_pred             CcCccCeEEcCCCcEEEEeCCCceEEEeCCC-e-EEEEe--ccCCccccCccceEEcCC----CcEEEeeCCCccCcccc
Q 022967          116 GDTLLGITTTQENEILVCDADKGLLKVTEEG-V-TVLAS--HVNGSRINLADDLIAATD----GSIYFSVASTKFGLHNW  187 (289)
Q Consensus       116 ~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~-~~~~~--~~~~~~~~~~~~l~~~~d----G~lyv~~~~~~~~~~~~  187 (289)
                      ..|. +|++.+||++||++....|++++.+| . ..+..  ...........+|+++|+    +.||+.....       
T Consensus         2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~-------   73 (331)
T PF07995_consen    2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNA-------   73 (331)
T ss_dssp             SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-------
T ss_pred             CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcc-------
Confidence            3577 99999999999999866788888677 5 44433  222233456789999995    8899975420       


Q ss_pred             ccccceecCCCEEEEEeCCCC--e---EEEe----eC---CCCCcceEEEecCCCEEEEEeC-------------CCCeE
Q 022967          188 GLDLLEAKPHGKLLKYDPSLN--E---TSIL----LD---SLFFANGVALSKDEDYLVVCET-------------FKFRC  242 (289)
Q Consensus       188 ~~~~~~~~~~g~i~~~~~~~~--~---~~~~----~~---~~~~p~gl~~~~d~~~l~v~~~-------------~~~~i  242 (289)
                        .........+|.|+..+.+  .   .+.+    ..   ......+|+|+||| .|||+--             ...+|
T Consensus        74 --~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   74 --DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             ---TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             --cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence              0000011235666654333  1   1222    11   23445679999999 5998752             23578


Q ss_pred             EEEEecCCCC----------cceeeeeccCCCCCCceeeCCC-CCEEEEEeCc
Q 022967          243 LKYWLKGESK----------EQTEIFVENLPGGPDNIKLAPD-GSFWIAILQV  284 (289)
Q Consensus       243 ~~~~~~~~~~----------~~~~~~~~~~~~~p~~i~~d~~-G~lwv~~~~g  284 (289)
                      .|++.+|...          ...+.+...+ -.|-++++|+. |+||++..+.
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-S
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCC
Confidence            9999776411          1234444333 24778999999 9999998653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.35  E-value=0.00029  Score=58.63  Aligned_cols=178  Identities=16%  Similarity=0.134  Sum_probs=107.3

Q ss_pred             CcceEEEccCCCEEEEec-CCeEEEEecC-CceEE-eeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEE
Q 022967           78 GPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWEN-WKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~-~g~i~~~~~~-g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~  150 (289)
                      ...++.+.+++.++++.. ++.|..++.. ++... +........ .+.+++++.++++.. ...+..++ ..+  ...+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence            466788888877776554 8999999843 44322 222223345 888988877776654 45577777 444  3333


Q ss_pred             EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d  228 (289)
                      ...     ......+.+.+++. ++++..                  .+.+..+|...++..... ........++++++
T Consensus       174 ~~~-----~~~i~~~~~~~~~~~l~~~~~------------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  230 (289)
T cd00200         174 TGH-----TGEVNSVAFSPDGEKLLSSSS------------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD  230 (289)
T ss_pred             ecC-----ccccceEEECCCcCEEEEecC------------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence            211     12467889999984 555532                  366888887654443332 22335677899998


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +. ++++....+.|..|+......  ...+. ........+..+++|.++++...
T Consensus       231 ~~-~~~~~~~~~~i~i~~~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         231 GY-LLASGSEDGTIRVWDLRTGEC--VQTLS-GHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             Cc-EEEEEcCCCcEEEEEcCCcee--EEEcc-ccCCcEEEEEECCCCCEEEEecC
Confidence            66 555545568899998764221  11111 22234567888888766555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.35  E-value=1.3e-05  Score=74.92  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=109.3

Q ss_pred             CCcCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCC---ceEEEeCC
Q 022967           74 GILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADK---GLLKVTEE  145 (289)
Q Consensus        74 ~~~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~---~i~~~~~~  145 (289)
                      ..+..||+||+|- ..++| +++...+|-+...||+.++.  ....-+|. +|++|+ .|+||.+|..+   .|-+.+-|
T Consensus      1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIets~mD 1143 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIETSSMD 1143 (1289)
T ss_pred             ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCcceeeccC
Confidence            3478999999997 55676 65566777776677876554  34456788 999996 46899998642   36666656


Q ss_pred             C--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      |  -++++..    .+..|++|.++|..+ |-+.|..                 +.++-.+.+++-..+++..++..|-+
T Consensus      1144 G~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~LqYPF~ 1202 (1289)
T KOG1214|consen 1144 GENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNLQYPFS 1202 (1289)
T ss_pred             CccceEEeec----ccCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhcccCcee
Confidence            6  5555542    245799999999764 5555654                 35677777775455566688888888


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      |.-  +++.+|++|...++|...++.+.
T Consensus      1203 its--y~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1203 ITS--YADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             eee--ccccceeeccccCceEEeecccc
Confidence            764  45569999999999999887654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=0.0003  Score=58.96  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=94.1

Q ss_pred             cceEEEccCCCEEEEe-cCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe----CCC-eEEE
Q 022967           79 PEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT----EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~----~~g-~~~~  150 (289)
                      -..|.+.|.+..+++. .+..|..||.. -+-.......+.|.  .|+|++|-++++..+. .|..+|    ..| ++.+
T Consensus       103 V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf  180 (311)
T KOG1446|consen  103 VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF  180 (311)
T ss_pred             EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence            4456777766777544 56677777732 22233333345554  8999999877765543 566666    245 6655


Q ss_pred             EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC----CCCCcceEEE
Q 022967          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----SLFFANGVAL  225 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~----~~~~p~gl~~  225 (289)
                      ....  ......++|.+.+||. |.+++..                  +.++.+|.-+|.+..-..    ....|-+-++
T Consensus       181 ~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  181 SITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             ccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            4321  2234567999999996 6777643                  668888876676443322    3344556789


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecC
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +||++.++.+ ...++|..|+++.
T Consensus       241 tPds~Fvl~g-s~dg~i~vw~~~t  263 (311)
T KOG1446|consen  241 TPDSKFVLSG-SDDGTIHVWNLET  263 (311)
T ss_pred             CCCCcEEEEe-cCCCcEEEEEcCC
Confidence            9999965555 5668999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.33  E-value=0.00029  Score=58.67  Aligned_cols=176  Identities=18%  Similarity=0.193  Sum_probs=106.9

Q ss_pred             ceEEEccCC-CEEEEecCCeEEEEec-CC-ceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEe
Q 022967           80 EDVCVDRNG-VLYTATRDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g-~l~v~~~~g~i~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~  152 (289)
                      ..+.+.+++ .++++..+|.|..++. ++ ....+........ .+.+.+++.++++.. ...+..++ .++  ...+. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-  132 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-  132 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence            367777777 4567777899999984 33 3333333233455 888988877777765 45577777 444  33222 


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCE
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~  231 (289)
                      ..    ...+..+.+.+++.++++...                 .+.|..+|..+++.. .+.........+.++++++.
T Consensus       133 ~~----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         133 GH----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             cC----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence            11    124678899998876665431                 356778887644432 23223335678899999987


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++++.. .+.|..|+.......  ..+. ........+..++++.++++..
T Consensus       192 l~~~~~-~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         192 LLSSSS-DGTIKLWDLSTGKCL--GTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEecC-CCcEEEEECCCCcee--cchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            887755 688999987642211  1110 1122345577777776666654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.30  E-value=4.3e-06  Score=75.26  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCC
Q 022967          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~  197 (289)
                      .+.+|.+|++||+.. .|+++++ ..| +-.+..    .++ +..+.+..|-.|++||++.                   
T Consensus       169 aLv~D~~g~lWvgT~-dGL~~fd~~~gkalql~s----~~~dk~I~al~~d~qg~LWVGTd-------------------  224 (671)
T COG3292         169 ALVFDANGRLWVGTP-DGLSYFDAGRGKALQLAS----PPLDKAINALIADVQGRLWVGTD-------------------  224 (671)
T ss_pred             eeeeeccCcEEEecC-CcceEEccccceEEEcCC----CcchhhHHHHHHHhcCcEEEEec-------------------
Confidence            788999999999985 8899999 556 433322    222 4567888889999999874                   


Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCcceE----EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967          198 GKLLKYDPSLNETSILLDSLFFANGV----ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p~gl----~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  273 (289)
                      -+++++++.+.++..  .+...|.+.    .-+.+|. +|+...  +.+.|+......+...........+....+..|.
T Consensus       225 qGv~~~e~~G~~~sn--~~~~lp~~~I~ll~qD~qG~-lWiGTe--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~  299 (671)
T COG3292         225 QGVYLQEAEGWRASN--WGPMLPSGNILLLVQDAQGE-LWIGTE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT  299 (671)
T ss_pred             cceEEEchhhccccc--cCCCCcchheeeeecccCCC-EEEeec--ccceeEecCCCCccccccccCCccccccceeecc
Confidence            358888887533322  333444443    3344555 888743  5667666543333222211111112345688999


Q ss_pred             CCCEEEEEeCccc
Q 022967          274 DGSFWIAILQVFI  286 (289)
Q Consensus       274 ~G~lwv~~~~g~i  286 (289)
                      +|++|+++.++.+
T Consensus       300 dGsLWv~t~~giv  312 (671)
T COG3292         300 DGSLWVGTYGGIV  312 (671)
T ss_pred             CCCEeeeccCceE
Confidence            9999999987654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.28  E-value=0.00072  Score=59.35  Aligned_cols=177  Identities=14%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             CcceEEEccCCC-EEEEe-c-CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEeCCC-eEEEE
Q 022967           78 GPEDVCVDRNGV-LYTAT-R-DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~-~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~~g-~~~~~  151 (289)
                      .|+.+++.+||+ ||+.+ . ++.|.++| ..+++..-...++... ......+.++..|-.+. ..+.++.+| ...-.
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            345899999886 78776 3 78899999 5565543333333233 33333333443343222 122333445 22111


Q ss_pred             ecc----CCccccCccceEEcC-CCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE------EeeC----
Q 022967          152 SHV----NGSRINLADDLIAAT-DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS------ILLD----  215 (289)
Q Consensus       152 ~~~----~~~~~~~~~~l~~~~-dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~------~~~~----  215 (289)
                      ...    ...-+..|   .+.+ ||+ +|++.                   .|.|+.+|..+....      .+..    
T Consensus       185 ~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~~  242 (352)
T TIGR02658       185 TEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEKA  242 (352)
T ss_pred             eeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeeccccccc
Confidence            011    11112233   2234 665 55552                   277888884332211      1111    


Q ss_pred             CCCCcce---EEEecCCCEEEEEe---------CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEE
Q 022967          216 SLFFANG---VALSKDEDYLVVCE---------TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (289)
Q Consensus       216 ~~~~p~g---l~~~~d~~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~  281 (289)
                      ....|-|   +++++|++++||..         ...+.|+++|....+..  .. + .....|.+|++.+||. +.+.+
T Consensus       243 ~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi--~~-i-~vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       243 DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL--RK-I-ELGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE--EE-E-eCCCceeeEEECCCCCeEEEEe
Confidence            1234555   99999999999953         23368999997653221  11 1 2235788999999997 44433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.27  E-value=0.00044  Score=57.66  Aligned_cols=151  Identities=20%  Similarity=0.223  Sum_probs=93.4

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC---eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g---~~~~~  151 (289)
                      ..-|++++- +++||.-+ .++..+++|.+. +...-....+... ||+.|. ..||++|....++.+|+..   .+.+.
T Consensus        90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen   90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSDG-KRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEECS-SCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcCC-CEEEEECCccceEEECCcccceEEEEE
Confidence            346777776 55788444 667788888542 2211122345667 999763 4799999778899999543   33332


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-----------C----
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------S----  216 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-----------~----  216 (289)
                      -...+.+....|.|..- +|.||...-.                 +..|.++||.+|++....+           .    
T Consensus       167 V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~  228 (264)
T PF05096_consen  167 VTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQP  228 (264)
T ss_dssp             -EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--
T ss_pred             EEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccc
Confidence            23455666777888765 7899876532                 3689999999998876431           1    


Q ss_pred             -CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          217 -LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       217 -~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                       ..--||||++++.+.+||+--.--.++++.+.
T Consensus       229 ~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  229 DDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             cCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence             23459999999999999997666677776653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.00053  Score=62.54  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=90.3

Q ss_pred             eEEEccCCC-EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967           81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (289)
Q Consensus        81 ~l~~d~~g~-l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~  149 (289)
                      +.++.++|+ |++.. .  ...|++++ ..|+...+....+... ..++.+||+ |+++ +..  ..|+.++ .+| .+.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            346777775 44333 2  34688888 4555554443334444 678999996 5444 322  2489998 566 555


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +....     .......++|||+ |+++...               .+...||.++.++++.+.+..........+|+||
T Consensus       287 lt~~~-----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        287 LTNHF-----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD  346 (433)
T ss_pred             CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            43211     1234578999996 6555321               0123699999877766555333233446899999


Q ss_pred             CCEEEEEeCC--CCeEEEEEecCC
Q 022967          229 EDYLVVCETF--KFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~--~~~i~~~~~~~~  250 (289)
                      |+.++++...  ...|+.+++++.
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCC
Confidence            9998887543  346888888654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.00098  Score=60.70  Aligned_cols=150  Identities=13%  Similarity=0.124  Sum_probs=91.5

Q ss_pred             ceEEEccCCC-E-EEEecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CC--CceEEEe-CCC-eE
Q 022967           80 EDVCVDRNGV-L-YTATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-AD--KGLLKVT-EEG-VT  148 (289)
Q Consensus        80 ~~l~~d~~g~-l-~v~~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~--~~i~~~~-~~g-~~  148 (289)
                      ....+.|||+ | |++..+  ..|++++ .+|+.+.+....+... ..++.+||+ |+++. ..  ..|+.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            4457778775 4 344333  4688888 4566555443334444 678989986 54443 22  2588898 556 55


Q ss_pred             EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      .+... .    .......+.|||. |+++...               .+...||+++.++++.+.+...........|+|
T Consensus       281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            54321 1    1233567889985 6665422               123479999988777665543322333468999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEecCC
Q 022967          228 DEDYLVVCETFK--FRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~~--~~i~~~~~~~~  250 (289)
                      |++.++++....  ..|+.+|+++.
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCC
Confidence            999998876532  36888887754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.0012  Score=60.23  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             eEEEccCCC-EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEE
Q 022967           81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (289)
Q Consensus        81 ~l~~d~~g~-l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~  149 (289)
                      +.++.|||+ |++.. .  +..|+.++ ..|+...+....+... ..++.+||+ |+++ +..  ..||.++ ..+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            347778875 44333 2  24588888 4566555543334445 788999985 5544 322  3588888 444 554


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +... .    .......+.|||+ |+++...               .....||.++.++++.+.+..........+|+||
T Consensus       279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            4221 1    1233567999996 6654321               0224689998776665554322222335689999


Q ss_pred             CCEEEEEeCC--CCeEEEEEecCC
Q 022967          229 EDYLVVCETF--KFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~--~~~i~~~~~~~~  250 (289)
                      |++++++...  ...|+.+++++.
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCC
Confidence            9988776543  246888888754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.0016  Score=59.43  Aligned_cols=150  Identities=13%  Similarity=0.056  Sum_probs=92.9

Q ss_pred             ceEEEccCCC-EE-EEe--cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC-C--CceEEEe-CCC-eE
Q 022967           80 EDVCVDRNGV-LY-TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D--KGLLKVT-EEG-VT  148 (289)
Q Consensus        80 ~~l~~d~~g~-l~-v~~--~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~-~--~~i~~~~-~~g-~~  148 (289)
                      ....+.|||+ |+ ++.  .+..|+.++ ..|+...+....+... ..++.+||+ |+++.. .  ..|+.++ .++ .+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            3457778876 43 443  245788888 4565555544344445 788999996 544432 2  3489898 556 55


Q ss_pred             EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      .+... .    .......++|||+ |+++...               .+...||++|.++++.+.+..+........|+|
T Consensus       284 ~Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp  343 (435)
T PRK05137        284 RLTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP  343 (435)
T ss_pred             EccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence            54321 1    1234568899995 6655321               123479999988777766644333334578999


Q ss_pred             CCCEEEEEeCC--CCeEEEEEecCC
Q 022967          228 DEDYLVVCETF--KFRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~--~~~i~~~~~~~~  250 (289)
                      ||+.++++...  ..+|+.+++++.
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCC
Confidence            99998887543  357888887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.15  E-value=0.00066  Score=59.58  Aligned_cols=79  Identities=10%  Similarity=-0.005  Sum_probs=57.9

Q ss_pred             ceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC-EEEEEeCCCCe
Q 022967          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCETFKFR  241 (289)
Q Consensus       164 ~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~-~l~v~~~~~~~  241 (289)
                      .+++.+|| ++||.......+.        ...+.+.|+.+|..+++......-...|.++++++|++ .||+++...+.
T Consensus       252 ~ia~~~dg~~lyV~~~~~~~~t--------hk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       252 QVAYHRARDRIYLLADQRAKWT--------HKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             eEEEcCCCCEEEEEecCCcccc--------ccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence            39999986 6998532100000        00133579999999888766655567899999999999 99999988899


Q ss_pred             EEEEEecCC
Q 022967          242 CLKYWLKGE  250 (289)
Q Consensus       242 i~~~~~~~~  250 (289)
                      |.++|....
T Consensus       324 VsViD~~t~  332 (352)
T TIGR02658       324 LYIFDAETG  332 (352)
T ss_pred             EEEEECcCC
Confidence            999997654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.14  E-value=0.00078  Score=60.30  Aligned_cols=179  Identities=16%  Similarity=0.247  Sum_probs=112.6

Q ss_pred             CcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEee-e-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-C-CC-eEEE
Q 022967           78 GPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWK-L-IGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG-VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~-~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~-~g-~~~~  150 (289)
                      .-.++.+.++|. ||.++.+|.|..|+ ..|....+. . ...... +|+....+.++.+..+..+.+++ . +| -...
T Consensus       322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence            345577777654 77888999999998 445444332 1 123344 88888778899888777788777 3 33 2211


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                      ..+..    ..|.++++.+||.+.+...                  ...|..+.-.++ .... .-...+..++++|++.
T Consensus       401 ~~~lg----~QP~~lav~~d~~~avv~~------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~~~~~  456 (603)
T KOG0318|consen  401 VVKLG----SQPKGLAVLSDGGTAVVAC------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVSPDGS  456 (603)
T ss_pred             eeecC----CCceeEEEcCCCCEEEEEe------------------cCcEEEEecCCc-ceee-ccccccceEEEcCCCC
Confidence            11112    4677999999985443321                  134555543322 2222 3446788999999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      .+.|.-. ...|..|.+.|..+....... ...+-+..++..+||.+++++..
T Consensus       457 ~vaVGG~-Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  457 EVAVGGQ-DGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             EEEEecc-cceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence            7777643 467999999886553322222 33355777888899888777643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=0.0013  Score=59.96  Aligned_cols=150  Identities=8%  Similarity=0.007  Sum_probs=92.0

Q ss_pred             ceEEEccCCCEE--EEe--cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eE
Q 022967           80 EDVCVDRNGVLY--TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VT  148 (289)
Q Consensus        80 ~~l~~d~~g~l~--v~~--~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~  148 (289)
                      .+.++.|||+..  +..  .+..|+.++ ..|+.+.+....+... ..++.+||+ |+++...   ..|+.++ ++| .+
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            346888888633  333  234677777 4555554443334444 788999996 5554222   2488888 666 65


Q ss_pred             EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      .+....     .......+.|||+ |+++...               .....||+++.++++.+.+...........|+|
T Consensus       281 ~lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (429)
T PRK03629        281 QVTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS  340 (429)
T ss_pred             EccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECC
Confidence            553321     1234678999996 5554321               012379999998777666543333345678999


Q ss_pred             CCCEEEEEeCC--CCeEEEEEecCC
Q 022967          228 DEDYLVVCETF--KFRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~--~~~i~~~~~~~~  250 (289)
                      ||++++++...  ...|+.+|+++.
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCC
Confidence            99988776543  346888887654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.13  E-value=0.00037  Score=58.22  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEec--CCc---e---EEeeee----cCcCccCeEEcCC-CcEEEE
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK--NGT---W---ENWKLI----GGDTLLGITTTQE-NEILVC  133 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~--~g~---~---~~~~~~----~~~p~~gl~~d~~-g~l~v~  133 (289)
                      +++++...+..+|+|+.-.+|.+++.+ .+++++.++.  ++.   .   ..+...    .+.-..||++|+. ++||++
T Consensus        56 lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~  135 (248)
T PF06977_consen   56 LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA  135 (248)
T ss_dssp             EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE
Confidence            344554557889999998777666655 6788888872  221   1   122111    1111238999975 568887


Q ss_pred             eCC--CceEEEeC--CC--eEEEEe-cc--CCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEE
Q 022967          134 DAD--KGLLKVTE--EG--VTVLAS-HV--NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (289)
Q Consensus       134 ~~~--~~i~~~~~--~g--~~~~~~-~~--~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~  203 (289)
                      -..  .+++.++.  .+  ...... ..  ......-+.++.++| .|++|+-...                 ...|+.+
T Consensus       136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e-----------------s~~l~~~  198 (248)
T PF06977_consen  136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE-----------------SRLLLEL  198 (248)
T ss_dssp             EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT-----------------TTEEEEE
T ss_pred             eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC-----------------CCeEEEE
Confidence            533  35777773  23  332222 11  122334578999998 4788886543                 3678999


Q ss_pred             eCCCCeEEEe--eC-------CCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 022967          204 DPSLNETSIL--LD-------SLFFANGVALSKDEDYLVVCETFKFRCLKY  245 (289)
Q Consensus       204 ~~~~~~~~~~--~~-------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~  245 (289)
                      |.++.-...+  ..       .+..|-||+++++|+ |||+.- -+..|+|
T Consensus       199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF  247 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred             CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence            9774322222  12       246789999999987 898865 4788877

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.12  E-value=0.0025  Score=52.71  Aligned_cols=176  Identities=18%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE-ecc-CCc
Q 022967           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA-SHV-NGS  157 (289)
Q Consensus        83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~-~~~-~~~  157 (289)
                      ++..++.+|+++.++.|+.++ .+|+...-....+... ......++.+|+....+.++.+| .+| +..-. ... +..
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            454588999998999999999 4887543333222222 33233467899988656799999 888 43321 211 111


Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc------------ceEEE
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA------------NGVAL  225 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p------------~gl~~  225 (289)
                      .........++ ++.+|+...                  .+.|+.+|+++|+..--... ..+            .+-.+
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred             ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence            22223334444 456777753                  37899999988876332211 111            11122


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ..++ .+|++... +++..+|..+...    ..... ...+..+..-.++.+|+++..+.+
T Consensus       171 ~~~~-~v~~~~~~-g~~~~~d~~tg~~----~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  171 ISDG-RVYVSSGD-GRVVAVDLATGEK----LWSKP-ISGIYSLPSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             CCTT-EEEEECCT-SSEEEEETTTTEE----EEEEC-SS-ECECEECCCTEEEEEETTTEE
T ss_pred             EECC-EEEEEcCC-CeEEEEECCCCCE----EEEec-CCCccCCceeeCCEEEEEeCCCEE
Confidence            2234 68888654 4466667654321    12111 122333334455678887744443

...

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.12  E-value=0.00084  Score=54.83  Aligned_cols=182  Identities=14%  Similarity=0.103  Sum_probs=103.9

Q ss_pred             CCcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCC-CcEEEEeCCCceEEEe-C-CC-eEEE
Q 022967           77 NGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-E-EG-VTVL  150 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~-g~l~v~~~~~~i~~~~-~-~g-~~~~  150 (289)
                      ..-..+.+-.+|+ +|.+..+|.+..+| ..-........ ..|.+.+..+++ ++|+++|....|..+| . +- ...+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            3345567767777 56777888877777 22222222221 244437777764 5788888666688888 3 33 4444


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEe------eCCCCCcceE
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL------LDSLFFANGV  223 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~------~~~~~~p~gl  223 (289)
                      +++.    ......+.+.+||.+.++...                 .|.+|..+.-++.. ..+      ...-...-..
T Consensus       163 iPe~----~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  163 IPED----DTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             CCCC----CcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence            4322    246789999999988776543                 35666665433221 111      1111222334


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      .++||+++ +++.+....+++|+.++- + ..+...+......-+-++..||.+.|...+
T Consensus       222 ~lSPd~k~-lat~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  222 LLSPDVKY-LATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             EECCCCcE-EEeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            68999995 455566788999987764 2 222222222233444556667766665543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.05  E-value=0.0059  Score=54.53  Aligned_cols=139  Identities=15%  Similarity=0.170  Sum_probs=77.7

Q ss_pred             EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccc
Q 022967           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI  159 (289)
Q Consensus        83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~  159 (289)
                      +++ ++.+|+++.+|.|+.++ .+|+...-.........+.+.+ ++.+|++.....++.+| .+| +..-. ...+...
T Consensus        62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~  138 (377)
T TIGR03300        62 AVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRA-KLSSEVL  138 (377)
T ss_pred             EEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeee-ccCceee
Confidence            444 67999999899999999 6787543222222222155564 67899987666799999 678 43221 1222111


Q ss_pred             cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC------CcceEEEecCCCEEE
Q 022967          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF------FANGVALSKDEDYLV  233 (289)
Q Consensus       160 ~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~------~p~gl~~~~d~~~l~  233 (289)
                      .   ...+ .++.+|+...                  .+.|+.+|+++|+..--.....      ......+. + +.+|
T Consensus       139 ~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~  194 (377)
T TIGR03300       139 S---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVL  194 (377)
T ss_pred             c---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEE
Confidence            1   1122 2567777643                  3678999987776432111100      00111222 2 3466


Q ss_pred             EEeCCCCeEEEEEecC
Q 022967          234 VCETFKFRCLKYWLKG  249 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~  249 (289)
                      +. .....++.+|..+
T Consensus       195 ~~-~~~g~v~ald~~t  209 (377)
T TIGR03300       195 VG-FAGGKLVALDLQT  209 (377)
T ss_pred             EE-CCCCEEEEEEccC
Confidence            65 3456788888754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.05  E-value=0.0019  Score=55.13  Aligned_cols=157  Identities=13%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             EEEccCCCE-EEEe-----cCCeEEEEecCCc---eEEeeeecCcCccCeEEcCCC-cEEEEeCC---C-----------
Q 022967           82 VCVDRNGVL-YTAT-----RDGWIKRLHKNGT---WENWKLIGGDTLLGITTTQEN-EILVCDAD---K-----------  137 (289)
Q Consensus        82 l~~d~~g~l-~v~~-----~~g~i~~~~~~g~---~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~---~-----------  137 (289)
                      -++.+||++ |++.     ..|.|-++|....   +.+|...+-.|+ -|.+.+|| .|.|++.+   +           
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            467777875 5543     3478888885433   344444455688 99999999 78888532   1           


Q ss_pred             ----ceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE
Q 022967          138 ----GLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (289)
Q Consensus       138 ----~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  210 (289)
                          .+..+| .+|  ++.... .+.....+.+.|+++++|.++++....  +...      +  ..--|...+.. +..
T Consensus       135 tM~psL~~ld~~sG~ll~q~~L-p~~~~~lSiRHLa~~~~G~V~~a~Q~q--g~~~------~--~~PLva~~~~g-~~~  202 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVEL-PPDLHQLSIRHLAVDGDGTVAFAMQYQ--GDPG------D--APPLVALHRRG-GAL  202 (305)
T ss_pred             hcCCceEEEecCCCceeeeeec-CccccccceeeEEecCCCcEEEEEecC--CCCC------c--cCCeEEEEcCC-Ccc
Confidence                245554 455  333211 112234578899999999999986431  1100      0  01123344332 223


Q ss_pred             EEeeC------CCC-CcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          211 SILLD------SLF-FANGVALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       211 ~~~~~------~~~-~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      +.+..      .+. ..-.|+++.+++.+.++.-..+++..||..+..
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence            33211      122 234689999999888888778899999876543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.01  E-value=0.00062  Score=63.29  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=61.8

Q ss_pred             CEEEEEeCCC-----CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC------Ccceeeeec--cCCC
Q 022967          198 GKLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES------KEQTEIFVE--NLPG  264 (289)
Q Consensus       198 g~i~~~~~~~-----~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~--~~~~  264 (289)
                      +.|-.+|..+     .++..+..-...|.|+.++|||+++|++...+..+.++|++..+      +.-......  .+.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4688888876     34555556678899999999999999999999999999986421      111111111  2234


Q ss_pred             CCCceeeCCCCCEEEEEe
Q 022967          265 GPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       265 ~p~~i~~d~~G~lwv~~~  282 (289)
                      .|...++|.+|+.|++..
T Consensus       376 GPLHTaFDg~G~aytslf  393 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLF  393 (635)
T ss_pred             CcceEEECCCCCEEEeEe
Confidence            688899999999998864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.00  E-value=0.0042  Score=56.13  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=90.0

Q ss_pred             EEEccCCCE-EEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEE
Q 022967           82 VCVDRNGVL-YTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVL  150 (289)
Q Consensus        82 l~~d~~g~l-~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~  150 (289)
                      .++.++|+. ++.. .  ...|+.++ .+|+...+....+... .+++.+||+ |+++...   ..|+.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            356677763 3333 2  24688888 4565555444334455 788989985 6555322   3488888 555 5444


Q ss_pred             EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ... .    .......+.+||. |+++...               .....||.++.++++...+..........+++||+
T Consensus       274 ~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            221 1    1122457788885 5554321               12247999998877766655444455677899999


Q ss_pred             CEEEEEeCCC--CeEEEEEecC
Q 022967          230 DYLVVCETFK--FRCLKYWLKG  249 (289)
Q Consensus       230 ~~l~v~~~~~--~~i~~~~~~~  249 (289)
                      +.++++....  .+|+.+++++
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCC
Confidence            9888876543  3788888765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.0047  Score=56.04  Aligned_cols=145  Identities=11%  Similarity=0.074  Sum_probs=90.3

Q ss_pred             EEEccCCC--EEEEe-c--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC-C--CceEEEe-CCC-eEE
Q 022967           82 VCVDRNGV--LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D--KGLLKVT-EEG-VTV  149 (289)
Q Consensus        82 l~~d~~g~--l~v~~-~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~-~--~~i~~~~-~~g-~~~  149 (289)
                      ..+.|+|+  +|+.. .  +..|+.++ .+|+.+.+....+... ...+.+||+ |.++.. .  ..|+.++ ++| .+.
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            46677775  55433 2  35688888 5666666554334333 566888885 554432 1  3589998 566 665


Q ss_pred             EEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEec
Q 022967          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSK  227 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~  227 (289)
                      +... .+    ......+.||| .|||+...               .....||++|.++++.+.+.. +..  + ..|+|
T Consensus       272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~--~-~~~SP  328 (419)
T PRK04043        272 ITNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN--N-SSVST  328 (419)
T ss_pred             cccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc--C-ceECC
Confidence            5432 11    11234789999 58887532               123479999999888765543 222  2 48999


Q ss_pred             CCCEEEEEeCCC--------CeEEEEEecCC
Q 022967          228 DEDYLVVCETFK--------FRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~~--------~~i~~~~~~~~  250 (289)
                      ||+.+.++....        ..|+.+++++.
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence            999887765432        47888888765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0029  Score=57.78  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=80.6

Q ss_pred             eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      .|+.++.+|.. ..+........ ..++.+||+ |+++ ...  ..|+.++ ..| .+.+.. ..+    ......+.||
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence            56666655532 23332223344 778888986 4333 321  3588888 666 555432 121    2346689999


Q ss_pred             Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      |+ |+++...               .....||.+|.++++...+...........|+|||++++++..  +...|+++++
T Consensus       257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            95 6555321               1235699999988877666544334456789999998877643  2357999988


Q ss_pred             cCCC
Q 022967          248 KGES  251 (289)
Q Consensus       248 ~~~~  251 (289)
                      ++..
T Consensus       322 ~g~~  325 (435)
T PRK05137        322 DGSN  325 (435)
T ss_pred             CCCC
Confidence            7643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0028  Score=58.06  Aligned_cols=110  Identities=8%  Similarity=0.044  Sum_probs=70.5

Q ss_pred             CeEEcCCCc-EEEE-eCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967          121 GITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       121 gl~~d~~g~-l~v~-~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      ...+.+||+ |+++ ...  ..|+.++ ..| .+.+.. ..+    ......++|||+ |+++...              
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~--------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK--------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence            678889986 4443 322  2488888 556 544432 121    223578999996 6665321              


Q ss_pred             ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEecCC
Q 022967          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWLKGE  250 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~~~~  250 (289)
                       .+...||.+|.++++.+.+..........+|+||+++++++..  +...|+++++++.
T Consensus       283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence             1234699999988877766544444566789999998877643  3457888887654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.94  E-value=0.00083  Score=56.05  Aligned_cols=184  Identities=10%  Similarity=0.019  Sum_probs=101.5

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEec-C--CeEEEEe-cCCceEEeeeecC--cCccCeEEcCCCcEEEEeCCC-ceEE
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTATR-D--GWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENEILVCDADK-GLLK  141 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~-~--g~i~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~l~v~~~~~-~i~~  141 (289)
                      +..+-++-..-+++.++.+|.||-++. .  .+|.+++ .+|+......-..  ..- ||+.. +++||.-.... ..+.
T Consensus        37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~-~d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITIL-GDKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEE-TTEEEEEESSSSEEEE
T ss_pred             EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEE-CCEEEEEEecCCeEEE
Confidence            334333334456788877899997762 3  3688888 5676554332221  223 77775 45899888654 4677


Q ss_pred             EeCCC---eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE----Eee
Q 022967          142 VTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----ILL  214 (289)
Q Consensus       142 ~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~----~~~  214 (289)
                      +|.+-   +..+..  ++    .-.||+.+ +..||++|++                  ..|+.+||++-+..    +..
T Consensus       115 yd~~tl~~~~~~~y--~~----EGWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f~~~~~i~V~~  169 (264)
T PF05096_consen  115 YDPNTLKKIGTFPY--PG----EGWGLTSD-GKRLIMSDGS------------------SRLYFLDPETFKEVRTIQVTD  169 (264)
T ss_dssp             EETTTTEEEEEEE---SS----S--EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-SEEEEEE-EE
T ss_pred             EccccceEEEEEec--CC----cceEEEcC-CCEEEEECCc------------------cceEEECCcccceEEEEEEEE
Confidence            88543   333321  21    34578744 3379999976                  68999999753322    222


Q ss_pred             CC--CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcce---eeeecc---------CCCCCCceeeCCCC-CEEE
Q 022967          215 DS--LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT---EIFVEN---------LPGGPDNIKLAPDG-SFWI  279 (289)
Q Consensus       215 ~~--~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~---------~~~~p~~i~~d~~G-~lwv  279 (289)
                      .+  ...-|.+-+- +| .+|.---.+.+|.++|+.+......   ..+...         ....-+|||.|+++ ++||
T Consensus       170 ~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v  247 (264)
T PF05096_consen  170 NGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV  247 (264)
T ss_dssp             TTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred             CCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence            22  3345666664 44 4888777889999999875433211   000000         01345789998664 7888


Q ss_pred             EE
Q 022967          280 AI  281 (289)
Q Consensus       280 ~~  281 (289)
                      ..
T Consensus       248 TG  249 (264)
T PF05096_consen  248 TG  249 (264)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.0037  Score=56.96  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=78.2

Q ss_pred             eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc-EEE-EeC-C-CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILV-CDA-D-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-l~v-~~~-~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      +|+..+.+|. ...+........ ..++.+||+ |.+ +.. + ..++.++ ..| .+.+.. ..+    ......++||
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence            3555554443 222322222334 788999996 333 322 1 3477777 556 554432 111    2336789999


Q ss_pred             Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      |+ |+++...               .+...||.+|.++++.+.+..+........|+|||+.|+++..  +...|+++++
T Consensus       254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            95 6665321               0223699999988877776554444567899999997765533  2347888887


Q ss_pred             cCC
Q 022967          248 KGE  250 (289)
Q Consensus       248 ~~~  250 (289)
                      ++.
T Consensus       319 ~~g  321 (429)
T PRK03629        319 NGG  321 (429)
T ss_pred             CCC
Confidence            754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=0.001  Score=58.61  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=107.5

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecCCceEEee---eecCcCccCeEEcCCCc-EEEE-eCCCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENE-ILVC-DADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~-l~v~-~~~~~i~~~~-~~g-~~~~  150 (289)
                      -.+|.+.|.-.|. ++..++.+..+..||+.....   .-...|+--..|.++|. ..++ ....-+|.+| ..+ +..+
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence            4557788766655 666677666665566543322   12344553566778887 3333 3323477788 555 5444


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                      .. ..+.+..+..-+.+.+++.+....+.                 .|.|+.+...++++..-..--....+++|+.|++
T Consensus       296 ~~-~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  296 KP-PYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cC-CCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence            22 22333345667889999986555443                 4778888777665432211122346788999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      .||++.. .+.|++||+.....  ...|.+...-.-..++...+|.++......||
T Consensus       358 ~l~~~~~-~GeV~v~nl~~~~~--~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  358 ELLASGG-TGEVYVWNLRQNSC--LHRFVDDGSVHGTSLCISLNGSYLATGSDSGI  410 (514)
T ss_pred             EEEEEcC-CceEEEEecCCcce--EEEEeecCccceeeeeecCCCceEEeccCcce
Confidence            8888854 46999999876522  23454432222233665666763333334444

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.92  E-value=2.1e-05  Score=42.05  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKY  245 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~  245 (289)
                      +..|.|++++++|+ +||+|+++++|.+|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999997776 99999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.91  E-value=0.014  Score=52.62  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC-----------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eE
Q 022967           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VT  148 (289)
Q Consensus        83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~-----------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~  148 (289)
                      +++ +|.+|+.+.+|.++.++ .+|+...-.....           ....+++++ ++++|++.....++.+| ++| ..
T Consensus        66 vv~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         66 AVA-YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             EEE-CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence            443 68999999889999999 5786432211111           111134554 57899987656799999 678 43


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-------c
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------N  221 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-------~  221 (289)
                      .-.. ..+.....|   .+ .++.+|+...                  .+.|+.+|+++|+..--... ..|       .
T Consensus       144 W~~~-~~~~~~ssP---~v-~~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~~  199 (394)
T PRK11138        144 WQTK-VAGEALSRP---VV-SDGLVLVHTS------------------NGMLQALNESDGAVKWTVNL-DVPSLTLRGES  199 (394)
T ss_pred             cccc-CCCceecCC---EE-ECCEEEEECC------------------CCEEEEEEccCCCEeeeecC-CCCcccccCCC
Confidence            3221 122111111   22 2678888753                  36799999887765422111 011       1


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .-++  .++.+|+. +.++.++.++..+.
T Consensus       200 sP~v--~~~~v~~~-~~~g~v~a~d~~~G  225 (394)
T PRK11138        200 APAT--AFGGAIVG-GDNGRVSAVLMEQG  225 (394)
T ss_pred             CCEE--ECCEEEEE-cCCCEEEEEEccCC
Confidence            1112  23346666 34577888876543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.91  E-value=0.0046  Score=55.31  Aligned_cols=146  Identities=14%  Similarity=0.123  Sum_probs=93.5

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeecC-cCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEE
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG-DTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~  151 (289)
                      +..++.++... +.||+++..+.|++=+-...+.......+ .-. |++.+++.++|++....+.+++- +..  ...+.
T Consensus       329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~  406 (626)
T KOG2106|consen  329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII  406 (626)
T ss_pred             cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence            45567677664 45999998888887763333333333333 445 99999988888876544444443 222  33322


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      ..       ....+.++|.|.+-++..                  .|+.+.+|.++.....+......-+-+.++|||..
T Consensus       407 ~d-------~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  407 ED-------PAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAF  461 (626)
T ss_pred             cC-------ceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCE
Confidence            21       244678889886666543                  47888999886555444444344467899999997


Q ss_pred             EEEEeCCCCeEEEEEecC
Q 022967          232 LVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~  249 (289)
                      |-+. +.++-|+.|.++.
T Consensus       462 lAvg-s~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  462 LAVG-SHDNHIYIYRVSA  478 (626)
T ss_pred             EEEe-cCCCeEEEEEECC
Confidence            6666 6668888888764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0047  Score=56.31  Aligned_cols=145  Identities=14%  Similarity=0.122  Sum_probs=87.8

Q ss_pred             ceEEEccCCC-EE-EEec--CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CCC--ceEEEe-CCC-eE
Q 022967           80 EDVCVDRNGV-LY-TATR--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-ADK--GLLKVT-EEG-VT  148 (289)
Q Consensus        80 ~~l~~d~~g~-l~-v~~~--~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~--~i~~~~-~~g-~~  148 (289)
                      .++.+.|+|+ |. ++..  +..|+.++ .+|+.+.+....+... .+++.+||+ |+++. ...  .|+.++ ..+ .+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~  285 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS  285 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence            4468888886 33 3332  24688888 4555544443334445 788999996 55443 222  378888 555 55


Q ss_pred             EEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      .+... .    .......+.|||. |+++...               .+.-.||.++.+++..+.+ ....  ....++|
T Consensus       286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp  342 (429)
T PRK01742        286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG--YSAQISA  342 (429)
T ss_pred             eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC--CCccCCC
Confidence            54321 1    1245678999996 6665321               1234789998876655544 2211  3367999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ||+.++++..  ..+.++|+.+.
T Consensus       343 DG~~ia~~~~--~~i~~~Dl~~g  363 (429)
T PRK01742        343 DGKTLVMING--DNVVKQDLTSG  363 (429)
T ss_pred             CCCEEEEEcC--CCEEEEECCCC
Confidence            9998877743  66888887654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.86  E-value=0.0078  Score=52.75  Aligned_cols=169  Identities=17%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             cCCcceEEEcc-CCCEEEEecCCe------EEEEe--c-CC---ceE-----EeeeecCc--------CccCeEEcCCCc
Q 022967           76 LNGPEDVCVDR-NGVLYTATRDGW------IKRLH--K-NG---TWE-----NWKLIGGD--------TLLGITTTQENE  129 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~~~g~------i~~~~--~-~g---~~~-----~~~~~~~~--------p~~gl~~d~~g~  129 (289)
                      +.+=.+|..++ +|.+|+-+.+|.      ++.+.  . .+   .+.     .+....+.        +- ||++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            44557788884 677775454555      66555  2 11   111     11111122        33 788888999


Q ss_pred             EEEEeCCC-------ceEEEeCCC--eEEE-Eec-c-------CC-ccccCccceEEcCCCc-EEEeeCCCccCcccccc
Q 022967          130 ILVCDADK-------GLLKVTEEG--VTVL-ASH-V-------NG-SRINLADDLIAATDGS-IYFSVASTKFGLHNWGL  189 (289)
Q Consensus       130 l~v~~~~~-------~i~~~~~~g--~~~~-~~~-~-------~~-~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~  189 (289)
                      +||++.+.       .|++++.+|  .+.+ .+. .       .+ .......+|++.+||+ ||+...+.......  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~--~  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP--R  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc--c
Confidence            99997543       589999667  3443 111 1       11 1223556899999997 88876552111100  0


Q ss_pred             ccceecCCCEEEEEeCCCCe--EEEe---eC------CCCCcceEEEecCCCEEEEEeCC-------CCeEEEEEec
Q 022967          190 DLLEAKPHGKLLKYDPSLNE--TSIL---LD------SLFFANGVALSKDEDYLVVCETF-------KFRCLKYWLK  248 (289)
Q Consensus       190 ~~~~~~~~g~i~~~~~~~~~--~~~~---~~------~~~~p~gl~~~~d~~~l~v~~~~-------~~~i~~~~~~  248 (289)
                      .........+|++||+.+..  ...+   .+      ....+..++.-++++ |+|-++.       ..+|+++++.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~  251 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS  251 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence            00011112578999987522  2222   12      234556677777887 8888775       3467777765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.85  E-value=0.0081  Score=54.72  Aligned_cols=132  Identities=9%  Similarity=0.030  Sum_probs=76.3

Q ss_pred             eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      +|+.+|.+|.. ..+........ ..++.+||+ |+++...   ..|+.++ .+| ...+.. ..+    ......+.||
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            45555544432 22222222234 788889986 4444322   2488888 666 555432 121    2346789999


Q ss_pred             Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      |+ |+++...               .+...||.+|.+++..+.+...........|+|||++++++..  +...|++++.
T Consensus       251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence            95 6665321               1234799999887766655443333345689999998876543  3346777776


Q ss_pred             cCC
Q 022967          248 KGE  250 (289)
Q Consensus       248 ~~~  250 (289)
                      ++.
T Consensus       316 ~~g  318 (427)
T PRK02889        316 SGG  318 (427)
T ss_pred             CCC
Confidence            553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.84  E-value=0.0033  Score=57.34  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=90.1

Q ss_pred             eEEEccCCC-EEEE-ecC--CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEe-CC--CceEEEe-CCC-eEE
Q 022967           81 DVCVDRNGV-LYTA-TRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-AD--KGLLKVT-EEG-VTV  149 (289)
Q Consensus        81 ~l~~d~~g~-l~v~-~~~--g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~--~~i~~~~-~~g-~~~  149 (289)
                      .+.+.++|+ |++. +.+  ..|+.++ .+|+...+........ ...+.+||+ |+++. ..  ..++.++ .++ .+.
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            467888886 5443 333  3688888 4555555443333334 788989986 44443 22  2488888 556 555


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +..  .+   .......+.|||+ |+++...               .....|+.+|.++++...+..+. ......|+||
T Consensus       331 lt~--~g---~~~~~~~~SpDG~~Ia~~~~~---------------~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spd  389 (433)
T PRK04922        331 LTF--QG---NYNARASVSPDGKKIAMVHGS---------------GGQYRIAVMDLSTGSVRTLTPGS-LDESPSFAPN  389 (433)
T ss_pred             eec--CC---CCccCEEECCCCCEEEEEECC---------------CCceeEEEEECCCCCeEECCCCC-CCCCceECCC
Confidence            432  11   1233678999995 6665422               01236888998877766554332 2345689999


Q ss_pred             CCEEEEEeC--CCCeEEEEEecCC
Q 022967          229 EDYLVVCET--FKFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~--~~~~i~~~~~~~~  250 (289)
                      |+.++++..  +...|+.++.++.
T Consensus       390 G~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        390 GSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCEEEEEEecCCceEEEEEECCCC
Confidence            998777654  3456888887653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0036  Score=57.51  Aligned_cols=150  Identities=18%  Similarity=0.238  Sum_probs=99.0

Q ss_pred             cCCcceEEEccCCCEE-EEecCCeEEEEec-CC-ce-EEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--e
Q 022967           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-TW-ENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--V  147 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g-~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~  147 (289)
                      ...-.++++.++|... .+..+..|..++. +. .. ..+........ .++|.++|+++++....+ +..++ ..|  .
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~  281 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECV  281 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence            3455668888998755 4457788888883 33 33 33333334455 999999998888765544 55556 556  4


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE--EeeCCCCCc---ce
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDSLFFA---NG  222 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--~~~~~~~~p---~g  222 (289)
                      +.+....     ....++++.+||++.++...                 .+.|..+|..++...  ....+...+   .-
T Consensus       282 ~~l~~hs-----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  339 (456)
T KOG0266|consen  282 RKLKGHS-----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTS  339 (456)
T ss_pred             EeeeccC-----CceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeE
Confidence            4443321     24678899999987776532                 477888999887732  233333444   67


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.|+|++++++++. .++.+..|++..
T Consensus       340 ~~fsp~~~~ll~~~-~d~~~~~w~l~~  365 (456)
T KOG0266|consen  340 VQFSPNGKYLLSAS-LDRTLKLWDLRS  365 (456)
T ss_pred             EEECCCCcEEEEec-CCCeEEEEEccC
Confidence            78999999888774 446787777763

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.77  E-value=0.0041  Score=57.82  Aligned_cols=201  Identities=17%  Similarity=0.264  Sum_probs=105.1

Q ss_pred             CCcceEEE---ccC-CCEEEEe--cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--ceEEEe-CC--
Q 022967           77 NGPEDVCV---DRN-GVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK--GLLKVT-EE--  145 (289)
Q Consensus        77 ~~p~~l~~---d~~-g~l~v~~--~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--~i~~~~-~~--  145 (289)
                      ..-|.+++   +++ ..+|.++  .++.|+|+-.+........    .. .-..-..|.||++-...  .+-.+. ..  
T Consensus       244 f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~----~~-~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~  318 (524)
T PF05787_consen  244 FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDR----AA-NRDLLDEGTLYAAKFNQDGTGEWVPLGHGQ  318 (524)
T ss_pred             ccccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCccc----ch-hhhhhhCCEeceEEECCCCcEEEEECCCcc
Confidence            45677777   653 4567666  4577888864443221100    01 11112467777774321  122222 11  


Q ss_pred             C-e----------EEE------EeccCCccccCccceEEcC-CCcEEEeeCCCccCc-c-ccccccceecCCCEEEEEeC
Q 022967          146 G-V----------TVL------ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGL-H-NWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       146 g-~----------~~~------~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~-~-~~~~~~~~~~~~g~i~~~~~  205 (289)
                      + +          .++      +......++..+.++.++| +|.+||+.....-.. . .........+..|.|+++++
T Consensus       319 ~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~  398 (524)
T PF05787_consen  319 GGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDP  398 (524)
T ss_pred             cccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecc
Confidence            0 1          000      1112234677889999999 589999865421000 0 00111223456789999998


Q ss_pred             CCC-------eEEEee------------------CCCCCcceEEEecCCCEEEEEeCCCCeE------------EEEE--
Q 022967          206 SLN-------ETSILL------------------DSLFFANGVALSKDEDYLVVCETFKFRC------------LKYW--  246 (289)
Q Consensus       206 ~~~-------~~~~~~------------------~~~~~p~gl~~~~d~~~l~v~~~~~~~i------------~~~~--  246 (289)
                      +++       +++.+.                  ..+..|..|+|+++|+ |||++.....-            +.+.  
T Consensus       399 ~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~  477 (524)
T PF05787_consen  399 DGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARN  477 (524)
T ss_pred             cCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeec
Confidence            765       333332                  1266889999999998 77776543321            1111  


Q ss_pred             ------ecCCCCcceeeeec-cCCCCCCceeeCCCC-CEEEEEeC
Q 022967          247 ------LKGESKEQTEIFVE-NLPGGPDNIKLAPDG-SFWIAILQ  283 (289)
Q Consensus       247 ------~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G-~lwv~~~~  283 (289)
                            ..+...+....|.. .......|+++..|| .|||....
T Consensus       478 ~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvniQH  522 (524)
T PF05787_consen  478 DGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNIQH  522 (524)
T ss_pred             ccceeeeccccccceeeeccCCCCcccccceECCCCCEEEEEEeC
Confidence                  11122233334432 222456678898888 57776544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.75  E-value=0.0081  Score=54.69  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             CeEEcCCCc-EEE-EeCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967          121 GITTTQENE-ILV-CDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       121 gl~~d~~g~-l~v-~~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      ...+.+||+ |++ +...  ..|+.++ .+| .+.+.. ..+    ......+.|||+ |+++...              
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~--------------  263 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK--------------  263 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc--------------
Confidence            678888886 433 3322  3488888 566 554432 111    223578999995 6655322              


Q ss_pred             ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEecCC
Q 022967          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWLKGE  250 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~~~~  250 (289)
                       .+...||.+|.++++.+.+...........|+||++.++++..  +...|+++++++.
T Consensus       264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence             1224799999988877666443333455689999998877643  2357888887654

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.0032  Score=55.89  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=41.8

Q ss_pred             CCcceEEEccCCCEEEEe--c------------CCeEEEEecCC---------ceEEeeeecCcCccCeEEcCC-CcEEE
Q 022967           77 NGPEDVCVDRNGVLYTAT--R------------DGWIKRLHKNG---------TWENWKLIGGDTLLGITTTQE-NEILV  132 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~--~------------~g~i~~~~~~g---------~~~~~~~~~~~p~~gl~~d~~-g~l~v  132 (289)
                      +.=..|+++|||.||++.  .            .|+|++++.++         ..+.+.-+.-+|. |+++++. |.||+
T Consensus       177 H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~  255 (399)
T COG2133         177 HFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWT  255 (399)
T ss_pred             cCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEE
Confidence            334559999999999754  2            14566666333         2334555556789 9999986 89999


Q ss_pred             EeCCC
Q 022967          133 CDADK  137 (289)
Q Consensus       133 ~~~~~  137 (289)
                      ++++.
T Consensus       256 ~e~g~  260 (399)
T COG2133         256 TEHGP  260 (399)
T ss_pred             EecCC
Confidence            98764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.69  E-value=0.014  Score=52.64  Aligned_cols=183  Identities=18%  Similarity=0.217  Sum_probs=97.5

Q ss_pred             cceEEEccCCCEEEE-ecCCeEEEEe-cCCce-EEeee---ecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CC-C-eE
Q 022967           79 PEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTW-ENWKL---IGGDTLLGITTTQENEILVC-DADKGLLKVT-EE-G-VT  148 (289)
Q Consensus        79 p~~l~~d~~g~l~v~-~~~g~i~~~~-~~g~~-~~~~~---~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~-g-~~  148 (289)
                      -.++-+.|||..+++ ..+|+|+.|| .+|+. .++..   ..+... +|++.+|+.=+++ ..+..+-.+| .. . ++
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            466888999999954 4889999998 66653 33331   123345 6778777753333 3323232233 22 2 22


Q ss_pred             EEEec--cCC-----------------------------c-------cccCccceEEcCCCcEEEeeCCCccCccccccc
Q 022967          149 VLASH--VNG-----------------------------S-------RINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (289)
Q Consensus       149 ~~~~~--~~~-----------------------------~-------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~  190 (289)
                      .+...  ...                             .       -.+....+++.+||...++.             
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-------------  338 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG-------------  338 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-------------
Confidence            22100  000                             0       01123345555555322221             


Q ss_pred             cceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCc
Q 022967          191 LLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN  268 (289)
Q Consensus       191 ~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  268 (289)
                          ...|.|..++..++.-..+..  .-....+++.+..+. ++.+ .....|.++++.+......+.+  .+...|-+
T Consensus       339 ----syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~  410 (603)
T KOG0318|consen  339 ----SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEVV--KLGSQPKG  410 (603)
T ss_pred             ----ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCccccccee--ecCCCcee
Confidence                124667667665444333321  122345666665454 4444 4568899998876554444432  45578999


Q ss_pred             eeeCCCCCE-EEEEeC
Q 022967          269 IKLAPDGSF-WIAILQ  283 (289)
Q Consensus       269 i~~d~~G~l-wv~~~~  283 (289)
                      +++.++|.+ .+++.+
T Consensus       411 lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACIS  426 (603)
T ss_pred             EEEcCCCCEEEEEecC
Confidence            999999755 444443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.69  E-value=0.016  Score=52.78  Aligned_cols=131  Identities=12%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             eEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      .|+.++.+|.- ..+........ ...+.+||+ |.++...   ..|+.++ .+| .+.+.. ..+    ....+++.||
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence            45555544532 22222222344 788999996 4333222   2488888 556 554432 221    2236789999


Q ss_pred             Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      |+ |+++...               .+.-.||.+|.++++...+..+.......+|+|||+.++++..  +.-+|+.++.
T Consensus       259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            96 5554321               1123589999887776666444444567899999998777643  3345666665


Q ss_pred             cC
Q 022967          248 KG  249 (289)
Q Consensus       248 ~~  249 (289)
                      .+
T Consensus       324 ~~  325 (429)
T PRK01742        324 SG  325 (429)
T ss_pred             CC
Confidence            44

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.64  E-value=0.0084  Score=54.40  Aligned_cols=133  Identities=15%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             eEEEEecCCceEEeeeecCcCccCeEEcCCCc--EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      +|+..|.||.-.......+... ...+.+||+  +|++...   ..|+.++ ..| .+.+.. ..+    ......+.||
T Consensus       170 ~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPD  243 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKD  243 (419)
T ss_pred             eEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCC
Confidence            5666666775333222223333 677888885  6654432   3489999 667 666543 221    1223468999


Q ss_pred             C-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      | .|.++...               .+...||.++.++++.+.+......-..-.|+|||+.++++..  +...|+++++
T Consensus       244 G~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        244 GSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             CCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence            9 46665432               1246799999888877665433222233479999998888753  3347999998


Q ss_pred             cCCC
Q 022967          248 KGES  251 (289)
Q Consensus       248 ~~~~  251 (289)
                      ++..
T Consensus       309 ~~g~  312 (419)
T PRK04043        309 NSGS  312 (419)
T ss_pred             CCCC
Confidence            7643

>PTZ00421 coronin; Provisional

Probab=97.62  E-value=0.054  Score=50.20  Aligned_cols=149  Identities=16%  Similarity=0.105  Sum_probs=87.8

Q ss_pred             CcceEEEcc-CCCE-EEEecCCeEEEEe-cCCc--------eEEeeeecCcCccCeEEcCCC-cEEEE-eCCCceEEEe-
Q 022967           78 GPEDVCVDR-NGVL-YTATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EILVC-DADKGLLKVT-  143 (289)
Q Consensus        78 ~p~~l~~d~-~g~l-~v~~~~g~i~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~l~v~-~~~~~i~~~~-  143 (289)
                      .-.++++.+ ++++ +++..++.|..|+ .++.        ...+........ .++|++++ +++++ ..+..|..+| 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            346788888 6664 4677889999998 3332        112222223344 78898865 45554 3334466667 


Q ss_pred             CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CC
Q 022967          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FF  219 (289)
Q Consensus       144 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~  219 (289)
                      ..+  ...+.. .    .....++++.++|.+.++...                 .+.|..+|+.+++......+.  ..
T Consensus       156 ~tg~~~~~l~~-h----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        156 ERGKAVEVIKC-H----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             CCCeEEEEEcC-C----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence            555  333211 1    124678999999987776432                 467888898766543222221  12


Q ss_pred             cceEEEecCCCEEEEEeC---CCCeEEEEEecC
Q 022967          220 ANGVALSKDEDYLVVCET---FKFRCLKYWLKG  249 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~---~~~~i~~~~~~~  249 (289)
                      ...+.|.++++.+..+..   ..+.|..||+..
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            345677887775554322   246788888753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=0.0077  Score=50.68  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=90.6

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEe--cCCceEE-----eee--ec--CcCccCeEEcCCC-cEEEEeC
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWEN-----WKL--IG--GDTLLGITTTQEN-EILVCDA  135 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~--~~g~~~~-----~~~--~~--~~p~~gl~~d~~g-~l~v~~~  135 (289)
                      ..++..++..||+|..-.+|...+++ .+.+++.+.  +++....     +..  ..  +.-..|+|+|+.+ +||++-.
T Consensus       121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE  200 (316)
T COG3204         121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE  200 (316)
T ss_pred             EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence            34555558889999887655555554 677787776  4432221     111  01  1122389999754 7999864


Q ss_pred             C--CceEEEe--CCCeEEEEec--cCC--ccccCccceEEcC-CCcEEE-eeCCCccCccccccccceecCCCEEEEEeC
Q 022967          136 D--KGLLKVT--EEGVTVLASH--VNG--SRINLADDLIAAT-DGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       136 ~--~~i~~~~--~~g~~~~~~~--~~~--~~~~~~~~l~~~~-dG~lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                      .  .+|+.++  ++....-...  ...  --..-..++.+++ .++++| ++.+                  ..|..+|.
T Consensus       201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES------------------r~l~Evd~  262 (316)
T COG3204         201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES------------------RRLLEVDL  262 (316)
T ss_pred             cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC------------------ceEEEEec
Confidence            4  4688887  2232111111  011  1123456778886 456555 4433                  56777777


Q ss_pred             CCCeEEEe---------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          206 SLNETSIL---------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       206 ~~~~~~~~---------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      ++.-.+.+         ......+-|++++.+|. ||++.- -+..|+|..
T Consensus       263 ~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~  311 (316)
T COG3204         263 SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTP  311 (316)
T ss_pred             CCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceeccc
Confidence            64333322         13356678999998888 888743 467777754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.59  E-value=0.033  Score=46.75  Aligned_cols=170  Identities=15%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEe-CCC--eEEEEe
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~-~~g--~~~~~~  152 (289)
                      .+..+-.|+.|.+++.+.....|| ..|+ ...|....+..+ +|.+.+ +++.||+..- .....+| .+|  .+.+..
T Consensus       149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g  227 (343)
T KOG0286|consen  149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG  227 (343)
T ss_pred             EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence            344555588999999998889998 5664 555666666777 888887 8899997533 3344555 444  555533


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~~  230 (289)
                      ..     .-.+.+.+-|+|.-+.+-..               ..+.++|-+..+ .++..+...  ....++++|+..|+
T Consensus       228 he-----sDINsv~ffP~G~afatGSD---------------D~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  228 HE-----SDINSVRFFPSGDAFATGSD---------------DATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             cc-----cccceEEEccCCCeeeecCC---------------CceeEEEeecCC-cEEeeeccCcccCCceeEEEccccc
Confidence            21     13678899999987766432               123455555444 455555432  34458899999999


Q ss_pred             EEEEEeCCCCeEEEEEe-cCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          231 YLVVCETFKFRCLKYWL-KGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      .||.. .....+.+||. .++..+   .+. ...+...+|.+.+||.
T Consensus       287 lLfag-y~d~~c~vWDtlk~e~vg---~L~-GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  287 LLFAG-YDDFTCNVWDTLKGERVG---VLA-GHENRVSCLGVSPDGM  328 (343)
T ss_pred             EEEee-ecCCceeEeeccccceEE---Eee-ccCCeeEEEEECCCCc
Confidence            76665 45678888874 232211   121 3334556677777764

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.58  E-value=0.0023  Score=59.42  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=46.6

Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCcc--ccc-----cccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEec
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLH--NWG-----LDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSK  227 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~--~~~-----~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~  227 (289)
                      ..+..|..|+++++|+|||..........  ...     ..+....+.. ++..++..+++..+...  ..-..|++|+|
T Consensus       433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence            45678999999999999997664211100  000     0000011111 55566777777766543  23347899999


Q ss_pred             CCCEEEEE
Q 022967          228 DEDYLVVC  235 (289)
Q Consensus       228 d~~~l~v~  235 (289)
                      |+++|||.
T Consensus       512 Dg~tlFvn  519 (524)
T PF05787_consen  512 DGRTLFVN  519 (524)
T ss_pred             CCCEEEEE
Confidence            99999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.55  E-value=0.015  Score=47.69  Aligned_cols=141  Identities=12%  Similarity=0.090  Sum_probs=87.6

Q ss_pred             ccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEe-ccCCccccCc
Q 022967           85 DRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS-HVNGSRINLA  162 (289)
Q Consensus        85 d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~-~~~~~~~~~~  162 (289)
                      ..+..+..+..++.|..|| .+|...........+. ++.+..+|++.....+.+|..++.+.+..+.. +.+   . ..
T Consensus       153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P---~-nV  227 (334)
T KOG0278|consen  153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP---C-NV  227 (334)
T ss_pred             ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc---c-cc
Confidence            3355555556778888898 5665444333334445 99999999987766667777777433222211 111   0 12


Q ss_pred             cceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCc-ceEEEecCCCEEEEEeCCCC
Q 022967          163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFA-NGVALSKDEDYLVVCETFKF  240 (289)
Q Consensus       163 ~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p-~gl~~~~d~~~l~v~~~~~~  240 (289)
                      ..-...|+-.+||+-+.                 ...+++||-++++-. .+..+-..| ..+.|+|||. +|.+-+..+
T Consensus       228 ~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDG  289 (334)
T KOG0278|consen  228 ESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDG  289 (334)
T ss_pred             ccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCc
Confidence            23345677788887542                 467999998877533 322333333 5678999998 999877777


Q ss_pred             eEEEEEec
Q 022967          241 RCLKYWLK  248 (289)
Q Consensus       241 ~i~~~~~~  248 (289)
                      .|+.|...
T Consensus       290 TirlWQt~  297 (334)
T KOG0278|consen  290 TIRLWQTT  297 (334)
T ss_pred             eEEEEEec
Confidence            77766543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.54  E-value=0.0067  Score=54.58  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCcc
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD  163 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~  163 (289)
                      ++.+|+.+.+|.++.++ .+|+.. |....+.+. .++.+ +++||+++....++.++ .+| ...-.....+..   ..
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~-~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~  329 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIV-WKREYGSVN-DFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---LT  329 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEE-EeecCCCcc-CcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc---cc
Confidence            67899888889999999 577643 333233344 55553 67899998777899999 677 322111111111   11


Q ss_pred             ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      ..++ .+|+||+.+..                  |.|+.+|+++|+..--..  +........+  .++.|||... .+.
T Consensus       330 sp~v-~~g~l~v~~~~------------------G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~-~G~  387 (394)
T PRK11138        330 APVL-YNGYLVVGDSE------------------GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQAR-DGT  387 (394)
T ss_pred             CCEE-ECCEEEEEeCC------------------CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeC-Cce
Confidence            2223 37899998743                  789999998887542211  1111111122  2445998854 477


Q ss_pred             EEEEE
Q 022967          242 CLKYW  246 (289)
Q Consensus       242 i~~~~  246 (289)
                      |+.+.
T Consensus       388 l~~~~  392 (394)
T PRK11138        388 VYAIT  392 (394)
T ss_pred             EEEEe
Confidence            88775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.54  E-value=0.0083  Score=51.67  Aligned_cols=187  Identities=12%  Similarity=0.109  Sum_probs=112.1

Q ss_pred             cCCcceEEEcc-CC-CEEEEecCCeEEEEe--cCC------------ceEEeeeecCcCccCeEEcCCCcEEEEeCC--C
Q 022967           76 LNGPEDVCVDR-NG-VLYTATRDGWIKRLH--KNG------------TWENWKLIGGDTLLGITTTQENEILVCDAD--K  137 (289)
Q Consensus        76 ~~~p~~l~~d~-~g-~l~v~~~~g~i~~~~--~~g------------~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~--~  137 (289)
                      -..-.+++.-| .+ .|-++...| |..+.  ..+            ..+.+...+..|++.|.+.+||..|++...  .
T Consensus       140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence            34566777777 23 345777655 65554  222            112223334456679999999998887543  3


Q ss_pred             ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeEEEe
Q 022967          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETSIL  213 (289)
Q Consensus       138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~  213 (289)
                      .|..++ +.| ..++...    ......-+.+.|||..+|+..-                  .+++++-...  ...+..
T Consensus       219 si~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt~------------------davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAATC------------------DAVFRLWQENQSWTKERW  276 (445)
T ss_pred             eEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEecc------------------cceeeeehhcccceecce
Confidence            477777 556 4444321    1123456789999987776542                  2344443221  222222


Q ss_pred             eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCc------ceeeee-cc------------CCCCCCceeeCCC
Q 022967          214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE------QTEIFV-EN------------LPGGPDNIKLAPD  274 (289)
Q Consensus       214 ~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~------~~~~~~-~~------------~~~~p~~i~~d~~  274 (289)
                      .-+....++-.|+|+|++|.++-.+.-+||....+++...      .++... ..            ..+.+..|+-|..
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps  356 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS  356 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence            2223355777899999999999999999999888754211      111111 11            1246778999999


Q ss_pred             CCEEEEEeCcc
Q 022967          275 GSFWIAILQVF  285 (289)
Q Consensus       275 G~lwv~~~~g~  285 (289)
                      |+..+....+.
T Consensus       357 GeyLav~fKg~  367 (445)
T KOG2139|consen  357 GEYLAVIFKGQ  367 (445)
T ss_pred             CCEEEEEEcCC
Confidence            98888877654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.52  E-value=0.026  Score=49.78  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=80.2

Q ss_pred             cCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccc
Q 022967          117 DTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (289)
Q Consensus       117 ~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~  192 (289)
                      .|++++..++.|+.+++....+-|.|.  .+|  +......  .. .-.....++.|||.|+.+-.              
T Consensus       304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s-~v~~ts~~fHpDgLifgtgt--------------  366 (506)
T KOG0289|consen  304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TS-DVEYTSAAFHPDGLIFGTGT--------------  366 (506)
T ss_pred             ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cc-cceeEEeeEcCCceEEeccC--------------
Confidence            344489999999877766556667665  566  4433222  11 12355789999998887643              


Q ss_pred             eecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967          193 EAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       193 ~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  271 (289)
                         ..+.|-.+|.+.+. ...+...-.-...++|+.+|=+| ++......|..||+.-  +.....+.-........+.+
T Consensus       367 ---~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  367 ---PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSF  440 (506)
T ss_pred             ---CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehh--hcccceeeccccccceeEEE
Confidence               24556666765333 22222222223568898766444 4445556699999853  22333332111112445888


Q ss_pred             CCCCCEEEEE
Q 022967          272 APDGSFWIAI  281 (289)
Q Consensus       272 d~~G~lwv~~  281 (289)
                      |..|.+.+..
T Consensus       441 D~SGt~L~~~  450 (506)
T KOG0289|consen  441 DQSGTYLGIA  450 (506)
T ss_pred             cCCCCeEEee
Confidence            9888665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.52  E-value=0.0043  Score=55.21  Aligned_cols=129  Identities=15%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             EEEEecCC-eEEEEecC-CceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccc
Q 022967           90 LYTATRDG-WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (289)
Q Consensus        90 l~v~~~~g-~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~  164 (289)
                      +.+++.+| .+-.++.+ |+.+.+....+... .+.++++|. +.+++....++.++ .+| .+.+.....    ....+
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd  448 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD  448 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence            44455554 56666643 45566666667777 888999997 66666556799999 888 766533222    24568


Q ss_pred             eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~  236 (289)
                      +++.|+++. ++     |+++       ++--.-.|..+|.+++++-.+...-..--.-+|+||+++||.-.
T Consensus       449 f~~~~nsr~-iA-----YafP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         449 FDWHPNSRW-IA-----YAFP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEEcCCcee-EE-----EecC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            888888874 33     2221       11112346677887766544433322233347899999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.51  E-value=0.032  Score=50.46  Aligned_cols=132  Identities=11%  Similarity=0.058  Sum_probs=77.6

Q ss_pred             eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      .|+..+.+|. ...+........ ..++.+||+ |+++...   ..|+.++ .+| .+.+.. ..+    ....+++.||
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            4666665543 333333222344 677888886 4444322   3488888 666 544432 111    2345789999


Q ss_pred             Cc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CCCeEEEEEe
Q 022967          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (289)
Q Consensus       171 G~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~~~i~~~~~  247 (289)
                      |. |+++...               .....||.++.+++..+.+...........|++|+++|+++..  +...|+++++
T Consensus       245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            85 7665322               1234699999887766655433333345689999998876543  2347888887


Q ss_pred             cCC
Q 022967          248 KGE  250 (289)
Q Consensus       248 ~~~  250 (289)
                      ++.
T Consensus       310 ~~~  312 (417)
T TIGR02800       310 DGG  312 (417)
T ss_pred             CCC
Confidence            654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.48  E-value=0.017  Score=46.64  Aligned_cols=131  Identities=16%  Similarity=0.093  Sum_probs=76.8

Q ss_pred             eEEEEe-cCCceEEeeeec-CcCccCeEEcCCCc-EEEEe--CCCceEEEeCCC--eEEEEeccCCccccCccceEEcCC
Q 022967           98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENE-ILVCD--ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        98 ~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~-l~v~~--~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      .|++++ .+.....+.... +... .+++.++|+ +.+..  ....+..++.++  +..+.       ....+.|.++|+
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~  111 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPD  111 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCC
Confidence            466666 333333332222 2345 899999886 43442  123466666334  32221       124568999999


Q ss_pred             CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC-----CCeEEEE
Q 022967          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-----KFRCLKY  245 (289)
Q Consensus       171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~-----~~~i~~~  245 (289)
                      |++.+..+.              ++..|.|..+|.++.+.... ........++|+|||+++..+.+.     .+.+..|
T Consensus       112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw  176 (194)
T PF08662_consen  112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW  176 (194)
T ss_pred             CCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence            987665432              11236788888874443222 223346789999999988877653     4566777


Q ss_pred             EecCCC
Q 022967          246 WLKGES  251 (289)
Q Consensus       246 ~~~~~~  251 (289)
                      +..|+.
T Consensus       177 ~~~G~~  182 (194)
T PF08662_consen  177 SFQGRL  182 (194)
T ss_pred             EecCeE
Confidence            777753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.47  E-value=0.024  Score=47.18  Aligned_cols=188  Identities=14%  Similarity=0.190  Sum_probs=105.1

Q ss_pred             CCcceEEEccCCC-EEEEecCCeEEEEecCCceE-Eeeeec--CcCccCeEEcCCC-cEEEEeC-CCceEEE-eCCCeEE
Q 022967           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWE-NWKLIG--GDTLLGITTTQEN-EILVCDA-DKGLLKV-TEEGVTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g~~~-~~~~~~--~~p~~gl~~d~~g-~l~v~~~-~~~i~~~-~~~g~~~  149 (289)
                      ..-.++++++|.+ +..++.+..|..++.-|... +....+  +-.. -+.|.|+. +.++... ..+.+++ |-++.+.
T Consensus       106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            4456688888655 45666788888887434322 122221  2234 67888764 4555433 3444444 4333111


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      . ....+ .....+.+++.|||.+-.+.+.                 .|.++..|.+.++--...+.....+.++|+|..
T Consensus       185 ~-~~~~g-h~~~v~t~~vSpDGslcasGgk-----------------dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  185 R-TTFIG-HSGYVNTVTVSPDGSLCASGGK-----------------DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             h-hcccc-ccccEEEEEECCCCCEEecCCC-----------------CceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence            1 11111 2246789999999999877432                 466666666555544445666777899999864


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCC-cceee-eec--cCCCCCCc--eeeCCCC-CEEEEEeCccc
Q 022967          230 DYLVVCETFKFRCLKYWLKGESK-EQTEI-FVE--NLPGGPDN--IKLAPDG-SFWIAILQVFI  286 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~-~~~~~-~~~--~~~~~p~~--i~~d~~G-~lwv~~~~g~i  286 (289)
                        .|++-.....|.+||++.... ..... +..  ...+.|.+  ++-..|| +||-+..++.|
T Consensus       246 --ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  246 --YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             --eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence              444444456688899876532 11111 110  11123444  5556778 67777666665

>PRK13684 Ycf48-like protein; Provisional

Probab=97.47  E-value=0.066  Score=47.10  Aligned_cols=142  Identities=16%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeee---cCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~  151 (289)
                      ...+|++..+.+.|+....|.|++=...| .++.....   ...+...++++. ++.|++.....+++-.+.|  .+.+.
T Consensus        47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~  125 (334)
T PRK13684         47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP  125 (334)
T ss_pred             ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence            34556666555666433456666654333 34433221   112222777764 4577776445566665545  44432


Q ss_pred             ec--cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-CCcceEEEecC
Q 022967          152 SH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKD  228 (289)
Q Consensus       152 ~~--~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d  228 (289)
                      ..  .++    .+..+....++.+|+...                  .|.|++-+-.+...+.+..+. ...+.+.+.++
T Consensus       126 ~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~  183 (334)
T PRK13684        126 LSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD  183 (334)
T ss_pred             CCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence            11  111    233343334445555432                  356777654444555543332 23356777777


Q ss_pred             CCEEEEEeCCCCeEEE
Q 022967          229 EDYLVVCETFKFRCLK  244 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~  244 (289)
                      +..+.+.  ....+++
T Consensus       184 g~~v~~g--~~G~i~~  197 (334)
T PRK13684        184 GKYVAVS--SRGNFYS  197 (334)
T ss_pred             CeEEEEe--CCceEEE
Confidence            7533333  2345554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.031  Score=51.40  Aligned_cols=147  Identities=18%  Similarity=0.161  Sum_probs=89.7

Q ss_pred             eEEEccCCCEEEEe-cCCeEEEEec-CCc--eEEeeeecC-cCccCeEEcCCCcEEEEeCC-CceEEEe-CC-C--eEEE
Q 022967           81 DVCVDRNGVLYTAT-RDGWIKRLHK-NGT--WENWKLIGG-DTLLGITTTQENEILVCDAD-KGLLKVT-EE-G--VTVL  150 (289)
Q Consensus        81 ~l~~d~~g~l~v~~-~~g~i~~~~~-~g~--~~~~~~~~~-~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~-g--~~~~  150 (289)
                      ++.+.++|+..+.. .++.+..+.. .++  ......... ... +++|.++|.+.++... ..+..++ .+ +  .+.+
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l  242 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL  242 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence            35666777766443 5555555543 222  111111122 234 8999999986666443 4455555 23 3  3444


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~  229 (289)
                      ...     ....+++++.++|++.++...                 .+.|..+|..+++.... .......++++|++|+
T Consensus       243 ~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~  300 (456)
T KOG0266|consen  243 KGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG  300 (456)
T ss_pred             cCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence            221     124589999999988887543                 35677777776665544 3444566889999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCC
Q 022967          230 DYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      +.|+.+ ...+.|..||..+..
T Consensus       301 ~~l~s~-s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  301 NLLVSA-SYDGTIRVWDLETGS  321 (456)
T ss_pred             CEEEEc-CCCccEEEEECCCCc
Confidence            966666 667899999987543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.46  E-value=0.00081  Score=46.65  Aligned_cols=62  Identities=18%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             eEEEccC-CCEEEEe------------------cCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-Cc
Q 022967           81 DVCVDRN-GVLYTAT------------------RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KG  138 (289)
Q Consensus        81 ~l~~d~~-g~l~v~~------------------~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~  138 (289)
                      ++.++++ |.+|+++                  ..|+++++++ +++.+.+......|+ |+++.+|+. |+|++.. .+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence            5788886 9999753                  3478999995 567778888888999 999999987 7788765 56


Q ss_pred             eEEEe
Q 022967          139 LLKVT  143 (289)
Q Consensus       139 i~~~~  143 (289)
                      |.|+.
T Consensus        81 i~ryw   85 (89)
T PF03088_consen   81 ILRYW   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77775

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.46  E-value=0.017  Score=47.37  Aligned_cols=169  Identities=14%  Similarity=0.088  Sum_probs=96.9

Q ss_pred             ecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcC
Q 022967           94 TRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (289)
Q Consensus        94 ~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~  169 (289)
                      ..+..|..+. .+|... .+....+..+ .|.+.++++...+.....|..+| .++ ..+++. ..+ ..+....+.|..
T Consensus        17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t-~e~-h~kNVtaVgF~~   93 (311)
T KOG0315|consen   17 GYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT-FEG-HTKNVTAVGFQC   93 (311)
T ss_pred             cCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeE-Eec-cCCceEEEEEee
Confidence            3667777776 567543 3334445566 88888888776666556677777 444 322222 111 113455777888


Q ss_pred             CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ||+.-.+.+                 ..|.+-..|...-..........-.|.+.++|....|+++|. +..|+++|+..
T Consensus        94 dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~  155 (311)
T KOG0315|consen   94 DGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGE  155 (311)
T ss_pred             cCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccC
Confidence            897444322                 234454455443222222222234478899998888999875 47899999865


Q ss_pred             CCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          250 ESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       250 ~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .... .+ ++.........++++.||.+.+|..+.|
T Consensus       156 ~~c~-~~-liPe~~~~i~sl~v~~dgsml~a~nnkG  189 (311)
T KOG0315|consen  156 NSCT-HE-LIPEDDTSIQSLTVMPDGSMLAAANNKG  189 (311)
T ss_pred             Cccc-cc-cCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence            4221 11 1211123345688888888887766543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.43  E-value=0.0054  Score=53.88  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=89.0

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe--CCC-eEEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--EEG-VTVLA  151 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~--~~g-~~~~~  151 (289)
                      -.+.++.|||.|+ .+..++.|-.|+ .++ ....|....+ |++.|.|..+|...++..+.+ +..+|  +.. +..+.
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            3457888899988 667888777777 333 3444443333 444899998887666655555 77777  333 44443


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcceEEEecC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD  228 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~gl~~~~d  228 (289)
                      ..    .....+.+.+|..|...+..+.                 .-.||.++..++.++.+   .+.....+++.|...
T Consensus       429 l~----~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 LD----EKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             cc----ccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            21    1235779999999976555332                 24688888776666544   233445677888754


Q ss_pred             CCEEEEEeCCCCeEEEE
Q 022967          229 EDYLVVCETFKFRCLKY  245 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~  245 (289)
                      .  -|++.++..++.++
T Consensus       488 a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  488 A--QYLASTSMDAILRL  502 (506)
T ss_pred             c--eEEeeccchhheEE
Confidence            4  45665666666543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.43  E-value=0.0078  Score=56.92  Aligned_cols=151  Identities=14%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-Eee--eecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT  148 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~--~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~  148 (289)
                      ...+++++.=|+.. +|...|.|-+++ +.|-.. .+.  .....+++|+++|.-+++.|+....|+..+.  ...  +.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            34567888766654 888999999999 666433 231  1123444599999888888887778887776  222  11


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~  227 (289)
                      .+...      ..+..+.-.....++....                 ..-.|..+|..+.++. .+.......+.++|+|
T Consensus       530 ~l~l~------~~~~~iv~hr~s~l~a~~~-----------------ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  530 SLRLG------SSITGIVYHRVSDLLAIAL-----------------DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eeccC------CCcceeeeeehhhhhhhhc-----------------CceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence            11110      0111221111111111100                 1235777887654432 2333445568899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGESK  252 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~~  252 (289)
                      ||+||..+.. ...|+.||+....+
T Consensus       587 DgrWlisasm-D~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  587 DGRWLISASM-DSTIRTWDLPTGTL  610 (910)
T ss_pred             CCcEEEEeec-CCcEEEEeccCcce
Confidence            9999988865 48899999875443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.42  E-value=0.035  Score=51.54  Aligned_cols=191  Identities=11%  Similarity=0.093  Sum_probs=95.3

Q ss_pred             EEEcc-CCCEEEEecCC------------------eEEEEe-cCCceEEeeeecC-------cCccCeEE---cCCCc--
Q 022967           82 VCVDR-NGVLYTATRDG------------------WIKRLH-KNGTWENWKLIGG-------DTLLGITT---TQENE--  129 (289)
Q Consensus        82 l~~d~-~g~l~v~~~~g------------------~i~~~~-~~g~~~~~~~~~~-------~p~~gl~~---d~~g~--  129 (289)
                      .++|+ +|.+|++..++                  .|+.+| .+|+.........       .+..-+..   +-+|.  
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~  301 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV  301 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence            46675 67889887554                  799998 5676543222110       00000111   12343  


Q ss_pred             --EEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967          130 --ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       130 --l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                        +|++.....++.+| .+| ...-... .      ..+++.++ +.+|+.......+..+-..........|.|+.+|.
T Consensus       302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~-~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         302 PAIVHAPKNGFFYVLDRTTGKLISARPE-V------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             EEEEEECCCceEEEEECCCCcEeeEeEe-e------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence              66666545689999 777 3221111 1      12344454 77888542211111000000001123578999998


Q ss_pred             CCCeEEEeeCCCC--------Cc---ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          206 SLNETSILLDSLF--------FA---NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       206 ~~~~~~~~~~~~~--------~p---~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                      .+|+..--.....        .+   ..++.  .++.+|+.+ ..+.|+.+|.++.+..............|  +....+
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~  448 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN  448 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence            8886532211110        11   12232  456688886 46889999976543322211111111112  444567


Q ss_pred             CCEEEEEeCcc
Q 022967          275 GSFWIAILQVF  285 (289)
Q Consensus       275 G~lwv~~~~g~  285 (289)
                      |++||++..|+
T Consensus       449 g~~yv~~~~g~  459 (488)
T cd00216         449 GKQYVGVMVGG  459 (488)
T ss_pred             CEEEEEEEecC
Confidence            89999998765

The alignment model contains an 8-bladed beta-propeller.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.41  E-value=0.096  Score=47.75  Aligned_cols=149  Identities=14%  Similarity=0.096  Sum_probs=84.0

Q ss_pred             EEccCCC---E-EEEecC--CeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEE--Ee-CC---
Q 022967           83 CVDRNGV---L-YTATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLK--VT-EE---  145 (289)
Q Consensus        83 ~~d~~g~---l-~v~~~~--g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~--~~-~~---  145 (289)
                      ++.|||+   + |++..+  ..|+..+. .|+...+....+... ..++.+||+ |.++...   ..++.  ++ ..   
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            7778874   2 355543  46888884 455555554445555 778999995 4444321   13444  34 22   


Q ss_pred             C-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeEEEeeCCCCCcc
Q 022967          146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLDSLFFAN  221 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~~~~~~~~p~  221 (289)
                      | .+.+....    ........+.|||+ |+++...               .+...||+++.+  ++..+.+........
T Consensus       270 g~~~~lt~~~----~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~  330 (428)
T PRK01029        270 GKPRRLLNEA----FGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS  330 (428)
T ss_pred             CcceEeecCC----CCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence            3 33333211    11223568999996 6655321               012368887654  233444433323335


Q ss_pred             eEEEecCCCEEEEEeCC--CCeEEEEEecCCC
Q 022967          222 GVALSKDEDYLVVCETF--KFRCLKYWLKGES  251 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~--~~~i~~~~~~~~~  251 (289)
                      ...|+|||++|+++...  ...|+++|+++..
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            67899999988876542  3579999987653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.41  E-value=0.03  Score=46.21  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEe-eeecC------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENW-KLIGG------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG  156 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~-~~~~~------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~  156 (289)
                      ++.+|+...+++++.++ .+|+...- .....      .+. ..+++ ++.+|++.....++.+| .+| ...-... ..
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS-SPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV-GE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--S-EEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES-ST
T ss_pred             ccccccccceeeeEecccCCcceeeeecccccccccccccc-CceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec-CC
Confidence            67899888888999999 78876533 12111      112 23343 45688887667799999 788 4222221 11


Q ss_pred             ccc-------cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          157 SRI-------NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       157 ~~~-------~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ...       ....+-.+-.+|.+|++...                  +.++.+|..+++.. .........+ ....++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~-~~~~~~  212 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYS-LPSVDG  212 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECE-CEECCC
T ss_pred             CCCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccC-CceeeC
Confidence            111       01112222235688888653                  45777788888744 2222222232 145678


Q ss_pred             CEEEEEeCCCCeEEEEEecCC
Q 022967          230 DYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +.||+.+ ..+.|+.+|+.+.
T Consensus       213 ~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  213 GTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             TEEEEEE-TTTEEEEEETTTT
T ss_pred             CEEEEEe-CCCEEEEEECCCC
Confidence            8899998 6799999998754

...

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.41  E-value=0.015  Score=52.22  Aligned_cols=145  Identities=11%  Similarity=0.017  Sum_probs=76.0

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEecCCceEE--eeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEeccCCc
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--WKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS  157 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~--~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~~~~~~  157 (289)
                      .++.+.++|.+.+++.+|.|..|++.+....  .....+... +|..-.+|.|.-...++.|..+|.+ .+.+.+..-..
T Consensus       250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe  327 (626)
T KOG2106|consen  250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPE  327 (626)
T ss_pred             EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecccc-ccccccccCch
Confidence            4588888999999999999999986553211  112234444 5666678887664333446666522 11111111111


Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      .+..++.++.... .|||++..                  +.|+.=..+++....+......--|++.+|+.+ +|++..
T Consensus       328 ~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~g  387 (626)
T KOG2106|consen  328 QFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCG  387 (626)
T ss_pred             hcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeecc
Confidence            2234555555443 38988754                  334444433332222222223445677777666 566644


Q ss_pred             CCCeEEEEE
Q 022967          238 FKFRCLKYW  246 (289)
Q Consensus       238 ~~~~i~~~~  246 (289)
                      ....+..|+
T Consensus       388 qdk~v~lW~  396 (626)
T KOG2106|consen  388 QDKHVRLWN  396 (626)
T ss_pred             CcceEEEcc
Confidence            434444443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.032  Score=47.11  Aligned_cols=139  Identities=14%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             cCCcceEEEccCCCEE-EEecCCeEEEEe----cCCceEEeeee---cCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC
Q 022967           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH----KNGTWENWKLI---GGDTLLGITTTQENE-ILVCDADKGLLKVT-EE  145 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~----~~g~~~~~~~~---~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~  145 (289)
                      +.++-..|+||+|-++ ++...+.|..+|    ..|-++.+.-.   ..+-. .|.|.+||+ +.+++...-++.+| -+
T Consensus       140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence            4456668999999998 445555787777    23445555432   12234 899999997 66666656688888 57


Q ss_pred             C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-CCc-c
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFA-N  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~p-~  221 (289)
                      |  ...+....  ...+.+-+..+.|||...++...                 .|+|..++.+++.......+. ..| .
T Consensus       219 G~~~~tfs~~~--~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~vw~~~tg~~v~~~~~~~~~~~~  279 (311)
T KOG1446|consen  219 GTVKSTFSGYP--NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIHVWNLETGKKVAVLRGPNGGPVS  279 (311)
T ss_pred             CcEeeeEeecc--CCCCcceeEEECCCCcEEEEecC-----------------CCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence            7  34333221  12234567789999988777543                 478888888776654433331 222 2


Q ss_pred             eEEEecCCCEEEEE
Q 022967          222 GVALSKDEDYLVVC  235 (289)
Q Consensus       222 gl~~~~d~~~l~v~  235 (289)
                      -+.|.|.-- ++++
T Consensus       280 ~~~fnP~~~-mf~s  292 (311)
T KOG1446|consen  280 CVRFNPRYA-MFVS  292 (311)
T ss_pred             ccccCCcee-eeee
Confidence            345666443 4444

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.40  E-value=0.00078  Score=39.61  Aligned_cols=38  Identities=24%  Similarity=0.005  Sum_probs=33.6

Q ss_pred             eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          213 LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       213 ~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +..++..|+|+++++.++.||++|...+.|.+.+++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34577889999999999999999999999999998764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.38  E-value=0.025  Score=48.45  Aligned_cols=154  Identities=14%  Similarity=0.053  Sum_probs=85.9

Q ss_pred             CcCccCeEEcCCCcEEE--EeC-CCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcccccc
Q 022967          116 GDTLLGITTTQENEILV--CDA-DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGL  189 (289)
Q Consensus       116 ~~p~~gl~~d~~g~l~v--~~~-~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~  189 (289)
                      .+.+ +++.++.....|  +-. +.-.+.+| .+| ....... + ...++.-.-++++||+ ||.+...          
T Consensus         5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~-~gRHFyGHg~fs~dG~~LytTEnd----------   71 (305)
T PF07433_consen    5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-P-PGRHFYGHGVFSPDGRLLYTTEND----------   71 (305)
T ss_pred             cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-C-CCCEEecCEEEcCCCCEEEEeccc----------
Confidence            4567 899988543333  322 23478888 667 3322222 2 2223444568999997 5555432          


Q ss_pred             ccceecCCCEEEEEeCCCC--eEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeE-----EEEEec------------CC
Q 022967          190 DLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCETFKFRC-----LKYWLK------------GE  250 (289)
Q Consensus       190 ~~~~~~~~g~i~~~~~~~~--~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i-----~~~~~~------------~~  250 (289)
                         .....|.|-.||...+  ++..+....-.|..+.+.|||+.|.|++-+-.+-     .+++++            +.
T Consensus        72 ---~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   72 ---YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             ---cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence               1234578888888722  2333455667799999999999999997542111     122222            11


Q ss_pred             CCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCcc
Q 022967          251 SKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       251 ~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ++.....+...+. ...+-|+++.+|.+|++...-|
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             ceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence            1111101100110 1244589999999999986544

>PTZ00420 coronin; Provisional

Probab=97.38  E-value=0.13  Score=48.41  Aligned_cols=149  Identities=13%  Similarity=0.021  Sum_probs=85.2

Q ss_pred             CCcceEEEccC-CCEE-EEecCCeEEEEe-cCCc--eE-------EeeeecCcCccCeEEcCCCcE-EEE-eCCCceEEE
Q 022967           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLH-KNGT--WE-------NWKLIGGDTLLGITTTQENEI-LVC-DADKGLLKV  142 (289)
Q Consensus        77 ~~p~~l~~d~~-g~l~-v~~~~g~i~~~~-~~g~--~~-------~~~~~~~~p~~gl~~d~~g~l-~v~-~~~~~i~~~  142 (289)
                      ....++++.++ +++. .+..++.|..|+ .++.  ..       .+........ .++|++++.. +++ ..+..|..+
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence            34567888884 5555 667889999998 3331  11       1111223344 8999988764 333 333456666


Q ss_pred             e-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC
Q 022967          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (289)
Q Consensus       143 ~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  219 (289)
                      | ..+  ...+.  ..    ..+..+.++++|.+.++...                 .+.|..+|+.+++......+...
T Consensus       154 Dl~tg~~~~~i~--~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        154 DIENEKRAFQIN--MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             ECCCCcEEEEEe--cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccC
Confidence            7 555  22221  11    24678999999998776432                 35688889887654432222111


Q ss_pred             c-ceE-----EEecCCCEEEEEeCCC---CeEEEEEecC
Q 022967          220 A-NGV-----ALSKDEDYLVVCETFK---FRCLKYWLKG  249 (289)
Q Consensus       220 p-~gl-----~~~~d~~~l~v~~~~~---~~i~~~~~~~  249 (289)
                      . ...     .++++++++..+....   +.|..||+..
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            1 111     2347777555544332   4688898763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.018  Score=55.09  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=87.0

Q ss_pred             CEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCcc
Q 022967           89 VLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLAD  163 (289)
Q Consensus        89 ~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~  163 (289)
                      .+.+++.++.|.++. +++....+..-...|...++++.+|+..++... ..|-.++ .++  ...+.. ..+    ...
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~a----pVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDA----PVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCC----cee
Confidence            555677788888887 555544343333445547888888877666443 4455555 444  333322 121    345


Q ss_pred             ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC---------CCcceEEEecCCCEEEE
Q 022967          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL---------FFANGVALSKDEDYLVV  234 (289)
Q Consensus       164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---------~~p~gl~~~~d~~~l~v  234 (289)
                      .+..+|+|++..+.+                 .+|.|..++.+.+.......++         .-..-++|+|+++.+.+
T Consensus       143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence            889999998766543                 3588888888766554433322         12245689999877776


Q ss_pred             EeCCCCeEEEEEecCC
Q 022967          235 CETFKFRCLKYWLKGE  250 (289)
Q Consensus       235 ~~~~~~~i~~~~~~~~  250 (289)
                      .-. .+.|..|+.++-
T Consensus       206 ~~~-d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  206 PPV-DNTVKVYSRKGW  220 (933)
T ss_pred             ecc-CCeEEEEccCCc
Confidence            644 588999987764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.36  E-value=0.023  Score=48.13  Aligned_cols=177  Identities=16%  Similarity=0.101  Sum_probs=94.7

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEec--CCceEEeeeecCcCccCeEEcCCC---cEEEEeCCCceEEEeCCCeEEEEec
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLHK--NGTWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEGVTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~~--~g~~~~~~~~~~~p~~gl~~d~~g---~l~v~~~~~~i~~~~~~g~~~~~~~  153 (289)
                      .++|++  |... .+..+.+|..||.  .-+...+....+... .+.|+..-   .|.-+..++.|..++.+.++.+.. 
T Consensus        47 tavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-  122 (362)
T KOG0294|consen   47 TALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-  122 (362)
T ss_pred             eEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-
Confidence            346664  3333 3447889999992  223333333334444 66665432   444444333344444222322211 


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                      ..... ...++|++.|.|+|-++.+.                 .+.+-.+|.-.|+...+..--..+.-+.|+|.|++++
T Consensus       123 lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  123 LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV  184 (362)
T ss_pred             ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence            11111 24889999999999988754                 2233334433344333333334455689999999888


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +.  .+++|-+|.++..++..   ++.+ +..+.++..+.++.+.||....
T Consensus       185 v~--~~~~i~i~q~d~A~v~~---~i~~-~~r~l~~~~l~~~~L~vG~d~~  229 (362)
T KOG0294|consen  185 VS--GRNKIDIYQLDNASVFR---EIEN-PKRILCATFLDGSELLVGGDNE  229 (362)
T ss_pred             EE--eccEEEEEecccHhHhh---hhhc-cccceeeeecCCceEEEecCCc
Confidence            87  55788888776533221   1111 1235556666666777766544

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.33  E-value=0.0054  Score=52.24  Aligned_cols=136  Identities=16%  Similarity=0.173  Sum_probs=79.7

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecCCceEEeee--------ecC--cCccCeEEcCCCc-EEEEeCC----CceEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL--------IGG--DTLLGITTTQENE-ILVCDAD----KGLLKV  142 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~--------~~~--~p~~gl~~d~~g~-l~v~~~~----~~i~~~  142 (289)
                      -..|++ .++.+| |.+.-.-+..++++-++...-+        ...  +-+ |||++ +|+ -||+.-+    .+-||-
T Consensus       105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~-~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMALD-DGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceeee-CCeEEEEEEeeccCCcccccc
Confidence            344666 456777 5555555666765554332211        112  345 99996 554 6766322    134554


Q ss_pred             e-CCC--eEEEEe-ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC
Q 022967          143 T-EEG--VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF  218 (289)
Q Consensus       143 ~-~~g--~~~~~~-~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~  218 (289)
                      + .+|  +--+.. ..--..+..|.+-.+ -+|+||+.|..                 .|.+.++|+++|+.+.++.-..
T Consensus       182 ~~~~gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG  243 (335)
T TIGR03032       182 GRRDGGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG  243 (335)
T ss_pred             cccCCeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence            4 333  211111 000011223333222 27899999975                 5899999999899998887777


Q ss_pred             CcceEEEecCCCEEEEEeC
Q 022967          219 FANGVALSKDEDYLVVCET  237 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~  237 (289)
                      +|.|++|.  |+.++|+-+
T Consensus       244 ~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       244 FTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             CCccccee--CCEEEEEec
Confidence            89999998  887777654

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.32  E-value=0.019  Score=50.34  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--eCC-------------CCCcceEEE
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDS-------------LFFANGVAL  225 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~-------------~~~p~gl~~  225 (289)
                      -+.+|++.++|.+||++....           .......|++++.++.....+  ...             -...-+|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~  154 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV  154 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence            345899988999999986410           000125799999873322222  111             122347899


Q ss_pred             ecCCCEEEEEeCCC---------------CeEEEEEecCCC--Ccceeeeecc-----CCCCCCceeeCCCCCEEEEEe
Q 022967          226 SKDEDYLVVCETFK---------------FRCLKYWLKGES--KEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       226 ~~d~~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~-----~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++||+.||++.-..               .+|++||.....  ........+.     ....+..+....+|.++|=-.
T Consensus       155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            99999888765322               467778765421  2222211221     112344455566677777543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.30  E-value=0.038  Score=46.92  Aligned_cols=184  Identities=11%  Similarity=0.019  Sum_probs=98.2

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEe
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~  152 (289)
                      .+++.+.+.|.+. +|+.+|+|..||- +-.........-+|.+.+.+.++|+.+++.. +..+..+| .+|  ...+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            7888999988766 8999999999993 2222222233345666999999998777654 35677777 566  444322


Q ss_pred             ccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-----CCCCcceEEEe
Q 022967          153 HVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANGVALS  226 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-----~~~~p~gl~~~  226 (289)
                      ..+      ..+..+.| +.+..+....               +....+..++.  ..-..+..     ....+.-..++
T Consensus       106 ~sp------v~~~q~hp~k~n~~va~~~---------------~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen  106 DSP------VWGAQWHPRKRNKCVATIM---------------EESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             cCc------cceeeeccccCCeEEEEEe---------------cCCcEEEEecC--CceeeccCCCcccccccccccccc
Confidence            111      12333333 2333333211               01123333332  11111110     01122223688


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccccC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFISN  288 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~~  288 (289)
                      +.|+++|.. +..+++..|+..+-+.  ...+--..-.....|.+...|..++-..+.++.+
T Consensus       163 r~g~yIitG-tsKGkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR  221 (405)
T KOG1273|consen  163 RRGKYIITG-TSKGKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR  221 (405)
T ss_pred             CCCCEEEEe-cCcceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence            899977777 4558899998664321  1111000001234466777777666665555554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.28  E-value=0.023  Score=53.36  Aligned_cols=177  Identities=10%  Similarity=0.028  Sum_probs=98.3

Q ss_pred             eEEEccCCCEEEEe-cCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCc---eEEEeCCC-eEEEEecc
Q 022967           81 DVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG---LLKVTEEG-VTVLASHV  154 (289)
Q Consensus        81 ~l~~d~~g~l~v~~-~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~---i~~~~~~g-~~~~~~~~  154 (289)
                      +..+.|+.++.+++ .+..+..|..+- ...+...+...|...+.|.+-|..+++....+   +|..|... .++++...
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence            35667777777665 456666666322 22223334456665788888875544433333   44444434 55554432


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCCCEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                           .-...+.+.|+.+...+ ++.                .-.+-.+|..+|. ++++...-..-..++++|+|++|-
T Consensus       536 -----sDV~cv~FHPNs~Y~aT-GSs----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  536 -----SDVDCVSFHPNSNYVAT-GSS----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             -----cccceEEECCccccccc-CCC----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence                 23456788898764444 331                1223334444444 444433333346789999998655


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      -+ ...+.|..||+.+.++-.  .+... .+....|.+..+|++.++...
T Consensus       594 Sg-~ed~~I~iWDl~~~~~v~--~l~~H-t~ti~SlsFS~dg~vLasgg~  639 (707)
T KOG0263|consen  594 SG-DEDGLIKIWDLANGSLVK--QLKGH-TGTIYSLSFSRDGNVLASGGA  639 (707)
T ss_pred             ec-ccCCcEEEEEcCCCcchh--hhhcc-cCceeEEEEecCCCEEEecCC
Confidence            44 445788889987643311  12211 244556778888888887643

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.066  Score=43.02  Aligned_cols=40  Identities=18%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             CEEEEEeCCCCeEEEeeC-------------CCCCcceEEEecCCCEEEEEeC
Q 022967          198 GKLLKYDPSLNETSILLD-------------SLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~-------------~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      .+|.|++|++|++....+             ...-+||+|+.++++++|++.-
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            478999999998764421             2345799999999988999843

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.28  E-value=0.01  Score=48.66  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       137 ~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      ..+..+| ..|  +..+...      ..+..+.+.+||++......                  +.|...|++.-....-
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~g------------------ssV~Fwdaksf~~lKs  220 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAYG------------------SSVKFWDAKSFGLLKS  220 (334)
T ss_pred             CceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEecC------------------ceeEEeccccccceee
Confidence            4566666 566  3333221      35678999999987665432                  4577777763222111


Q ss_pred             eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          214 LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       214 ~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+-..+...-.++|+.+ +||+-.....+++||.+..
T Consensus       221 ~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  221 YKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             ccCccccccccccCCCc-eEEecCcceEEEEEeccCC
Confidence            12223344556788775 8999777789999998753

>PTZ00421 coronin; Provisional

Probab=97.22  E-value=0.086  Score=48.90  Aligned_cols=155  Identities=12%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             cceEEEccCC-CE-EEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           79 PEDVCVDRNG-VL-YTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g-~l-~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      ..++++.+++ ++ ..+..++.|..|| .+++... +........ ++++.++|.++++... ..|..+| .++  +..+
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            4568888854 44 4667889999999 4454332 222223345 8999999987776544 4466667 555  3322


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEee-CCCCCcceEEEec
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILL-DSLFFANGVALSK  227 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~-~~~~~p~gl~~~~  227 (289)
                      ... .+   .....+.+.+++...++.+..             ....+.|..+|.....  ..... +......-..+++
T Consensus       207 ~~H-~~---~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~  269 (493)
T PTZ00421        207 EAH-AS---AKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE  269 (493)
T ss_pred             ecC-CC---CcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence            111 11   112244566666655554321             0113457777765322  11111 1111112235789


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      |++.||++..+.+.|..|++....
T Consensus       270 d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        270 DTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             CCCEEEEEEeCCCeEEEEEeeCCc
Confidence            999888886667889999987543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.21  E-value=0.01  Score=52.50  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC-C-eEEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EE-G-VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~-g-~~~~~  151 (289)
                      .-+...+.+++++. +...+|.|+.+. .++.+...-+..+... ++.|+.+|+ ||++.....||.+| .. . ...+.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            34556777777654 444678888887 4554433333445556 888988885 66665556688888 33 3 55554


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe----EEEe--eCCC-CCcceEE
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSIL--LDSL-FFANGVA  224 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~--~~~~-~~p~gl~  224 (289)
                      +.-   . .+...++...+|. |++.++                ..|-|-.||.++..    .+.+  .+.+ ...+.|.
T Consensus       384 D~G---~-v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  384 DDG---S-VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             ecC---c-cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence            421   1 2344778888888 666655                24656667644211    1111  1122 2346789


Q ss_pred             EecCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeec-cC-CCCCCceeeCCC-CCEEEEEeCccc
Q 022967          225 LSKDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVE-NL-PGGPDNIKLAPD-GSFWIAILQVFI  286 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~-~~~p~~i~~d~~-G~lwv~~~~g~i  286 (289)
                      |++|...|-++.+.. +.+....+..-+  ....|.. +. -+++.++++.+. |.+-||.-.|++
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~T--VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCT--VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEecccee--eeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            999999777765543 334433433211  1111111 11 157788999885 577777766654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=97.19  E-value=0.019  Score=46.98  Aligned_cols=161  Identities=16%  Similarity=0.132  Sum_probs=84.3

Q ss_pred             ccceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe--cCCc------eEEeeee-cCcCccCeEEcCCCcEEEEeC
Q 022967           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNGT------WENWKLI-GGDTLLGITTTQENEILVCDA  135 (289)
Q Consensus        65 ~~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~--~~g~------~~~~~~~-~~~p~~gl~~d~~g~l~v~~~  135 (289)
                      ..+..++..+ ..+-..|+..|+|.||.-.. +.+++..  .++.      .+.+... -+.=. .|.+|+.|.||..+.
T Consensus        23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~   99 (229)
T PF14517_consen   23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP   99 (229)
T ss_dssp             HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred             cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence            3455667665 56777889999999996554 4687773  1221      1222222 11223 789999999998887


Q ss_pred             CCceEEEe--CCC-eEE---EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEE-eCCCC
Q 022967          136 DKGLLKVT--EEG-VTV---LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN  208 (289)
Q Consensus       136 ~~~i~~~~--~~g-~~~---~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~~~~~  208 (289)
                      ...++|..  .++ ...   ....+.+...+....+.++++|.||..+..                  +++++. .|+.+
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~  161 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG  161 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred             ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence            55678876  222 211   111121223344567889999999998743                  567776 44432


Q ss_pred             e-------EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          209 E-------TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       209 ~-------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      .       ..+...+...+.-|.+++++. ||.+++ +..|+|+...
T Consensus       162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~p  206 (229)
T PF14517_consen  162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRPP  206 (229)
T ss_dssp             T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES--
T ss_pred             CCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCCc
Confidence            1       112223444567788888887 888854 4888887543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.18  E-value=0.00077  Score=35.90  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=21.2

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEE
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRL  102 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~  102 (289)
                      +..|.+|+++++|+||+++ .+++|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3579999999999999877 55677654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.15  E-value=0.015  Score=50.97  Aligned_cols=179  Identities=14%  Similarity=0.099  Sum_probs=103.6

Q ss_pred             CcceEEEccC---CCEEEEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCCeEEE
Q 022967           78 GPEDVCVDRN---GVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~---g~l~v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g~~~~  150 (289)
                      ...++.+.|.   -.|..+..+|.+..|+.+++  +..+.....+.. .++|+++|++..+.....-+|+-  ..+.+.+
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhhH
Confidence            3444555553   25556667787776664442  233333344566 89999999988876554444443  2332211


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~  229 (289)
                      ...  | --....++++.+||.|..+-+.               ...++||-+  .+|+-..+.. ...-..+++|+|.|
T Consensus       298 ~QE--G-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNG  357 (459)
T KOG0272|consen  298 LQE--G-HSKGVFSIAFQPDGSLAATGGL---------------DSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNG  357 (459)
T ss_pred             hhc--c-cccccceeEecCCCceeeccCc---------------cchhheeec--ccCcEEEEecccccceeeEeECCCc
Confidence            111  1 1135779999999999887543               234677654  4565555544 45556789999987


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEE
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAI  281 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~  281 (289)
                      - ...+....+.+.+||+......   ..+....+....+...+ .|++.+..
T Consensus       358 y-~lATgs~Dnt~kVWDLR~r~~l---y~ipAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  358 Y-HLATGSSDNTCKVWDLRMRSEL---YTIPAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             e-EEeecCCCCcEEEeeecccccc---eecccccchhhheEecccCCeEEEEc
Confidence            5 6677677888999988754321   11111123445566664 34444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.14  E-value=0.033  Score=49.69  Aligned_cols=131  Identities=16%  Similarity=0.179  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCcc
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD  163 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~  163 (289)
                      ++.+|+.+.+|.++.++ .+|+.. +........ ..+++ ++.+|+++....++.++ .+| ...-.....+....   
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~~~~~-~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s---  314 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVL-WKRDASSYQ-GPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT---  314 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEE-EeeccCCcc-CceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccc---
Confidence            57888888889999999 567643 322222333 45554 57899988666799999 667 33211111111111   


Q ss_pred             ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      ...+ .++.||+.+.                  .|.|+.+|+++|+..--..  +.......++. ++ .||+... ++.
T Consensus       315 sp~i-~g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~-dG~  372 (377)
T TIGR03300       315 APAV-VGGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTR-DGD  372 (377)
T ss_pred             cCEE-ECCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeC-Cce
Confidence            2223 3568888764                  3789999988776543221  11111111222 34 4888854 467


Q ss_pred             EEEE
Q 022967          242 CLKY  245 (289)
Q Consensus       242 i~~~  245 (289)
                      |+.|
T Consensus       373 l~~~  376 (377)
T TIGR03300       373 LYAF  376 (377)
T ss_pred             EEEe
Confidence            7765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.12  E-value=0.005  Score=56.22  Aligned_cols=74  Identities=20%  Similarity=0.213  Sum_probs=45.0

Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVV  234 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~v  234 (289)
                      .-+..|.+|++|+.|+||+.+....-...+.    +.  +-..+..=+++.+++..+..+-  .--.|.+|+||+++|+|
T Consensus       497 ~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV  570 (616)
T COG3211         497 NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV  570 (616)
T ss_pred             ccccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence            4467899999999999999765421000000    00  1113344455556665554322  23468899999999999


Q ss_pred             Ee
Q 022967          235 CE  236 (289)
Q Consensus       235 ~~  236 (289)
                      .-
T Consensus       571 ~v  572 (616)
T COG3211         571 NV  572 (616)
T ss_pred             Ee
Confidence            74

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.10  E-value=0.045  Score=52.52  Aligned_cols=152  Identities=15%  Similarity=0.181  Sum_probs=89.0

Q ss_pred             cceEEEccCCCEEE-EecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eEEEEe
Q 022967           79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~v-~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~~~~~  152 (289)
                      -++++++-+|+..+ +..+-.|..++ .|+..+....+...|+.++.+++++++.++..-+| +..++ .++  ...+..
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~  178 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG  178 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence            45688888888774 44555566666 44443333333344444999999998777654454 55666 666  222222


Q ss_pred             ccCCcc---ccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCC--CCcceEEE
Q 022967          153 HVNGSR---INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSL--FFANGVAL  225 (289)
Q Consensus       153 ~~~~~~---~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~--~~p~gl~~  225 (289)
                      ......   -+...-+++.|+| .+.+...                  .+.|..|++++.+..-.. +..  ..-+-++|
T Consensus       179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  179 VDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             CCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCceeheeecccccccceEEEEE
Confidence            111111   1234567899985 5544322                  356778887765433221 221  12456789


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecC
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +|.|++|-.+ +..+.|.+||.+.
T Consensus       241 sPnG~YiAAs-~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  241 SPNGKYIAAS-TLDGQILVWNVDT  263 (933)
T ss_pred             cCCCcEEeee-ccCCcEEEEeccc
Confidence            9999865444 4568899999874

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.07  E-value=0.085  Score=48.48  Aligned_cols=126  Identities=10%  Similarity=0.158  Sum_probs=78.7

Q ss_pred             ccccCccceEEcC-CCcEEEeeCCCccCcccc-ccccceecCCCEEEEEeCCCC-------eEEEee--------CC---
Q 022967          157 SRINLADDLIAAT-DGSIYFSVASTKFGLHNW-GLDLLEAKPHGKLLKYDPSLN-------ETSILL--------DS---  216 (289)
Q Consensus       157 ~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~-------~~~~~~--------~~---  216 (289)
                      .++-.|.++++.| .|.+|++...  .+.+.. ....-+.+..|.|+|+-+.++       ++..+.        ..   
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTN--n~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTN--NGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCC--CCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            3455788999998 4789998765  221111 112223445688999988765       444442        11   


Q ss_pred             -------CCCcceEEEecCCCEEEEEeCCCC--------eEEEEEecCCCCcceeeeeccC-CCCCCceeeCCCC-CEEE
Q 022967          217 -------LFFANGVALSKDEDYLVVCETFKF--------RCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDG-SFWI  279 (289)
Q Consensus       217 -------~~~p~gl~~~~d~~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G-~lwv  279 (289)
                             +..|.+|+|++.|+ ||+++.++.        .+......+.+....+.|.... .+...|.++..|| +++|
T Consensus       492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV  570 (616)
T COG3211         492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV  570 (616)
T ss_pred             cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence                   34589999999999 888765432        2333333444555666665432 2456678888887 7999


Q ss_pred             EEeCcc
Q 022967          280 AILQVF  285 (289)
Q Consensus       280 ~~~~g~  285 (289)
                      +....|
T Consensus       571 ~vQHPG  576 (616)
T COG3211         571 NVQHPG  576 (616)
T ss_pred             EecCCC
Confidence            876654

>PTZ00420 coronin; Provisional

Probab=97.05  E-value=0.14  Score=48.28  Aligned_cols=158  Identities=7%  Similarity=-0.031  Sum_probs=83.9

Q ss_pred             CcceEEEccCCC-EE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           78 GPEDVCVDRNGV-LY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      ...++++.|++. +. .+..++.|..|| ..++............ .++|+++|.++++... ..+..+| .++  +..+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            356788888765 33 456789999999 4454322112223445 8999999998876543 4577777 555  3333


Q ss_pred             EeccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceE--EEe
Q 022967          151 ASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGV--ALS  226 (289)
Q Consensus       151 ~~~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl--~~~  226 (289)
                      .. ..+... .......+.+++..+++.+...             .....|..+|.+. ++.......-..+..+  .++
T Consensus       206 ~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D  271 (568)
T PTZ00420        206 HI-HDGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD  271 (568)
T ss_pred             ec-ccCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence            21 111100 0001112346776666644310             0112466666552 2221111111122222  455


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++.+.+|++-.+.+.|+.|++..+
T Consensus       272 ~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        272 ESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCCCEEEEEECCCeEEEEEccCC
Confidence            665668888888899999988644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.04  E-value=0.087  Score=44.37  Aligned_cols=129  Identities=18%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             EccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCc--EEEEeC-CCceEEEeCCC---eEEEEeccCCc
Q 022967           84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDA-DKGLLKVTEEG---VTVLASHVNGS  157 (289)
Q Consensus        84 ~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--l~v~~~-~~~i~~~~~~g---~~~~~~~~~~~  157 (289)
                      .++||..++...+       ..|+...-..-..+.+ ||++++.-.  +.++-. +.-.+.+|.++   ...+..  ...
T Consensus        43 ~~~dgs~g~a~~~-------eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s--~~~  112 (366)
T COG3490          43 DARDGSFGAATLS-------EAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS--QEG  112 (366)
T ss_pred             eccCCceeEEEEc-------cCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec--ccC
Confidence            3457887754421       2344332223345667 888886542  444432 23356677444   333322  222


Q ss_pred             cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE---eeCCCCCcceEEEecCCCEEE
Q 022967          158 RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~---~~~~~~~p~gl~~~~d~~~l~  233 (289)
                      ++ +--.=.+.+||. ||-+....             ....|.|=.||.+ ..+..   +..-.-.|..+.+.+||+.+.
T Consensus       113 RH-fyGHGvfs~dG~~LYATEndf-------------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         113 RH-FYGHGVFSPDGRLLYATENDF-------------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             ce-eecccccCCCCcEEEeecCCC-------------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence            22 222336889996 67765431             1233555566654 23333   233345688899999999888


Q ss_pred             EEeC
Q 022967          234 VCET  237 (289)
Q Consensus       234 v~~~  237 (289)
                      +++-
T Consensus       178 vanG  181 (366)
T COG3490         178 VANG  181 (366)
T ss_pred             EeCC
Confidence            8854

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.04  E-value=0.17  Score=47.87  Aligned_cols=149  Identities=11%  Similarity=0.121  Sum_probs=87.4

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEee-eecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eEE
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK-LIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTV  149 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~-~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~~  149 (289)
                      ...-..+++++||+=.++--+++|.++| .+.+..++. ....... +++..++|.++++....| ...++ ...  +..
T Consensus        14 vyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~-~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   14 VYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNIT-RIALSPDGTLLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             eeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceE-EEEeCCCceEEEEEcCCCcEEEEecccceeeEE
Confidence            4455678999998877777788999999 443333333 3334445 899999999888765544 34444 322  222


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--------EEEeeCCCCCcc
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--------TSILLDSLFFAN  221 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--------~~~~~~~~~~p~  221 (289)
                      +.-  .    .....|.+.|||++++...+.                .-.||+. |+..+        .+.+...+....
T Consensus        93 f~f--k----~~v~~i~fSPng~~fav~~gn----------------~lqiw~~-P~~~~~~~~pFvl~r~~~g~fddi~  149 (893)
T KOG0291|consen   93 FNF--K----RGVGAIKFSPNGKFFAVGCGN----------------LLQIWHA-PGEIKNEFNPFVLHRTYLGHFDDIT  149 (893)
T ss_pred             Eee--c----CccceEEECCCCcEEEEEecc----------------eeEEEec-CcchhcccCcceEeeeecCCcccee
Confidence            211  1    245689999999877654320                1234443 21111        122334455567


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .+.|+.|.+ ++++.......+.+.+++
T Consensus       150 si~Ws~DSr-~l~~gsrD~s~rl~~v~~  176 (893)
T KOG0291|consen  150 SIDWSDDSR-LLVTGSRDLSARLFGVDG  176 (893)
T ss_pred             EEEeccCCc-eEEeccccceEEEEEecc
Confidence            789998888 555544445566666654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.92  E-value=0.12  Score=46.43  Aligned_cols=143  Identities=14%  Similarity=0.067  Sum_probs=78.7

Q ss_pred             EEccCCCEEEEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eE--EEEeccCC
Q 022967           83 CVDRNGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VT--VLASHVNG  156 (289)
Q Consensus        83 ~~d~~g~l~v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~--~~~~~~~~  156 (289)
                      ...++|.+++....|.+++-..+|.  ++..........+++.+..+|.+|++....++++-..+|  .+  .+......
T Consensus       245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~  324 (398)
T PLN00033        245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIK  324 (398)
T ss_pred             EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccC
Confidence            4455777775555566666655554  344433333333488888899999988666676666555  21  23221111


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCC-CCcceEEEecCCCEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSL-FFANGVALSKDEDYLV  233 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~-~~p~gl~~~~d~~~l~  233 (289)
                      .....+.++.+.+++.+|++-..                  |.+++-...++.++...  ... .+-..+.|..+++ .|
T Consensus       325 ~~~~~l~~v~~~~d~~~~a~G~~------------------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~  385 (398)
T PLN00033        325 SRGFGILDVGYRSKKEAWAAGGS------------------GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GF  385 (398)
T ss_pred             CCCcceEEEEEcCCCcEEEEECC------------------CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eE
Confidence            11134567888889999987532                  55555544433444432  211 1223566665555 66


Q ss_pred             EEeCCCCeEEEE
Q 022967          234 VCETFKFRCLKY  245 (289)
Q Consensus       234 v~~~~~~~i~~~  245 (289)
                      +.-. +..|.+|
T Consensus       386 ~~G~-~G~il~~  396 (398)
T PLN00033        386 VLGN-DGVLLRY  396 (398)
T ss_pred             EEeC-CcEEEEe
Confidence            6632 3455555

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.91  E-value=0.035  Score=48.74  Aligned_cols=109  Identities=14%  Similarity=0.145  Sum_probs=68.0

Q ss_pred             CccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967          118 TLLGITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       118 p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      .. +++|.+||.|..+..-..+-| +| .+|  +-.+..     -.....++.++|+|....+-++              
T Consensus       306 v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPNGy~lATgs~--------------  365 (459)
T KOG0272|consen  306 VF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPNGYHLATGSS--------------  365 (459)
T ss_pred             cc-eeEecCCCceeeccCccchhheeecccCcEEEEecc-----cccceeeEeECCCceEEeecCC--------------
Confidence            44 899999999877642222333 23 455  333322     1235679999999987766433              


Q ss_pred             ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                       ..+.+||.+... .....+.....-...+.++|+.+.+.++....+.+..|...
T Consensus       366 -Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~  418 (459)
T KOG0272|consen  366 -DNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR  418 (459)
T ss_pred             -CCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence             123467766543 23333333344456789999777788888888888777543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.86  E-value=0.18  Score=45.01  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=80.5

Q ss_pred             EccCCCEEEEecCCeEEEEecCCceEEeeeec----CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCc
Q 022967           84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS  157 (289)
Q Consensus        84 ~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~  157 (289)
                      ++.+|++|++..+|.|+.++.+.....|....    .... +-.+..+|++|+++....++.+| .+| ...... ..+.
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC
Confidence            55689999998899999999544332232211    1222 33333489999998645599999 488 443322 1221


Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--e-C--CCCCcceEEEecCCCEE
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--L-D--SLFFANGVALSKDEDYL  232 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~-~--~~~~p~gl~~~~d~~~l  232 (289)
                       . ...+-++-.++.+|+...                  .+.++.++.++|+..-.  . .  ......... ..++ .+
T Consensus       143 -~-~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~v  200 (370)
T COG1520         143 -P-YYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TV  200 (370)
T ss_pred             -e-EEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eE
Confidence             1 111224556888888742                  26788888887765322  1 1  111112222 2233 47


Q ss_pred             EEEeCC-CCeEEEEEecC
Q 022967          233 VVCETF-KFRCLKYWLKG  249 (289)
Q Consensus       233 ~v~~~~-~~~i~~~~~~~  249 (289)
                      |+...+ +..++.++...
T Consensus       201 y~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         201 YVGSDGYDGILYALNAED  218 (370)
T ss_pred             EEecCCCcceEEEEEccC
Confidence            777553 34688888743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.86  E-value=0.53  Score=46.54  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=82.1

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecC-----CceE---Eee-eecCcCccCeEEcCC-CcEEEE-eCCCceEEEe-CC
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-----GTWE---NWK-LIGGDTLLGITTTQE-NEILVC-DADKGLLKVT-EE  145 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~-----g~~~---~~~-~~~~~p~~gl~~d~~-g~l~v~-~~~~~i~~~~-~~  145 (289)
                      -.+++++++|++. ++..++.|..|+.+     +...   ... ....... ++.+.+. +...++ ..+..+..+| .+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            4558899988876 56678889888732     1110   011 1112234 7777653 444444 4334455566 44


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      +  +..+.. .    .....++++.+ ++.++++...                 .+.|..+|..++..............
T Consensus       565 ~~~~~~~~~-H----~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~  622 (793)
T PLN00181        565 SQLVTEMKE-H----EKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC  622 (793)
T ss_pred             CeEEEEecC-C----CCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence            5  333211 1    12467889986 7777766432                 35677777765543322222234456


Q ss_pred             EEEec-CCCEEEEEeCCCCeEEEEEecC
Q 022967          223 VALSK-DEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       223 l~~~~-d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.|.+ ++.. +++....+.|+.||+..
T Consensus       623 v~~~~~~g~~-latgs~dg~I~iwD~~~  649 (793)
T PLN00181        623 VQFPSESGRS-LAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEEeCCCCCE-EEEEeCCCeEEEEECCC
Confidence            67754 5664 44446678999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=96.85  E-value=0.23  Score=42.01  Aligned_cols=144  Identities=17%  Similarity=0.150  Sum_probs=81.9

Q ss_pred             ceEEEcc-CCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCC
Q 022967           80 EDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG  156 (289)
Q Consensus        80 ~~l~~d~-~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~  156 (289)
                      ..|-+++ .+.|.+++.+|.+..++.+..........+.|+...+|.++..+|+.+.++.|.++| ..+ ...+-...  
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~--   94 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD--   94 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC--
Confidence            4456665 567889999999999984332111112234555478887777899988777788888 555 33332211  


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceE-EEecCCCEEEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV-ALSKDEDYLVVC  235 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl-~~~~d~~~l~v~  235 (289)
                         .....|.-.+.-...++.+                 -...|-.+|+....   .......++.+ +.+-.++.|.|+
T Consensus        95 ---~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v~g~~LvVg  151 (323)
T KOG1036|consen   95 ---EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKV---VVGTFDQGKKVYCMDVSGNRLVVG  151 (323)
T ss_pred             ---CceEEEEeeccCCeEEEcc-----------------cCccEEEEeccccc---cccccccCceEEEEeccCCEEEEe
Confidence               1233444443223344432                 23567777776311   11222223322 556667777776


Q ss_pred             eCCCCeEEEEEecC
Q 022967          236 ETFKFRCLKYWLKG  249 (289)
Q Consensus       236 ~~~~~~i~~~~~~~  249 (289)
                       +..+++..||+..
T Consensus       152 -~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  152 -TSDRKVLIYDLRN  164 (323)
T ss_pred             -ecCceEEEEEccc
Confidence             4558899999753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.82  E-value=0.26  Score=45.77  Aligned_cols=114  Identities=13%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecC---------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEecc
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV  154 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~---------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~  154 (289)
                      +|.+|+++.++.|+.+| .+|+...-.....         ... ++++..++.+|+++....++.+| .+| ...-....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            78999999889999999 5775432111110         112 44453337899988767799999 678 43322211


Q ss_pred             CC--ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          155 NG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       155 ~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ..  ..........+. ++.+|+......+         ......+.++.+|.++|+..
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCcee
Confidence            10  000011222333 3677776432110         00012467889998877643

The alignment model contains an 8-bladed beta-propeller.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.81  E-value=0.21  Score=43.87  Aligned_cols=179  Identities=12%  Similarity=0.111  Sum_probs=84.9

Q ss_pred             eEEEccCCCEEEEecCCeEEEEecCC-ceEEeee---ecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEecc
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV  154 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~  154 (289)
                      +++++ .++.|+....+.|++-...| +++....   ..+.+. .+....++.+|++.....+++-++.|  .+.+....
T Consensus        94 ~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~  171 (334)
T PRK13684         94 SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA  171 (334)
T ss_pred             eeEEc-CCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence            34444 23455444445555543222 3443321   123344 44443345567666545577766555  44433222


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeC-CCCCcceEEEecCCCEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD-SLFFANGVALSKDEDYL  232 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~-~~~~p~gl~~~~d~~~l  232 (289)
                          ....+++.+.++|.+++...                  .|.+++-..+++ .++.+.. .....+++++.++++ +
T Consensus       172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~  228 (334)
T PRK13684        172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L  228 (334)
T ss_pred             ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence                22456788888876554432                  256666522323 3544432 234457788888887 5


Q ss_pred             EEEeCCCCeEEEEE-ecC-CCCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCcccc
Q 022967          233 VVCETFKFRCLKYW-LKG-ESKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       233 ~v~~~~~~~i~~~~-~~~-~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      |++..  ....++. .++ .+..... ...... .....+++..++.+|++...|.+.
T Consensus       229 ~~vg~--~G~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~  283 (334)
T PRK13684        229 WMLAR--GGQIRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLL  283 (334)
T ss_pred             EEEec--CCEEEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEE
Confidence            55533  2333342 222 2221110 000000 012335556667788877666543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.81  E-value=0.23  Score=42.85  Aligned_cols=180  Identities=16%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             EEEccCCCEEEEecCCeEEEEecCC-ceEEeee---ecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccC
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN  155 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~  155 (289)
                      |.++ +...|+....+.|++-...| +++.+..   ..+.+. ++....++..+++.....|++-.+.|  .+.+.....
T Consensus        67 I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~  144 (302)
T PF14870_consen   67 ISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS  144 (302)
T ss_dssp             EEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred             EEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence            4444 34567544456455554333 4555432   234455 55554556677666545677776555  555443322


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEE-EeCCCCeEEEeeC-CCCCcceEEEecCCCEEE
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNETSILLD-SLFFANGVALSKDEDYLV  233 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~  233 (289)
                          ...+++...+||++.....                  .|.+|+ .++.......... ..+.-+.|.|++++. ||
T Consensus       145 ----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw  201 (302)
T PF14870_consen  145 ----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW  201 (302)
T ss_dssp             ------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred             ----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence                2456777788887443332                  255554 4543223444433 345667889999977 77


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeecc-CCCC-CCceeeCCCCCEEEEEeCcccc
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVEN-LPGG-PDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      +...+ ..|+.=+.......-.+...+. ..++ --.++...++.+|++..+|.+.
T Consensus       202 ~~~~G-g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  202 MLARG-GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             EEETT-TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             EEeCC-cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence            77643 5565544111100001111111 0111 1236777788899988777553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.80  E-value=0.13  Score=41.41  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                      .+++++ .+. ...+.....    ....++++.|+|. +.+..+.                ....+..||.+...+..+.
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~   99 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG   99 (194)
T ss_pred             EEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec
Confidence            477776 334 443322111    1367999999996 4444322                1135666776643333332


Q ss_pred             CCCCCcceEEEecCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          215 DSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                        -...|.+.|+|+|++|.++..+  .+.|..||....+     ............+.-+++|++.++..
T Consensus       100 --~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-----~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  100 --TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-----KISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             --CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-----EeeccccCcEEEEEEcCCCCEEEEEE
Confidence              2345789999999988888654  3468888876321     11111111245577788887766653

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.78  E-value=0.5  Score=44.89  Aligned_cols=153  Identities=14%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CCcceEEEccCCCEE--EEe-------cCCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-CC
Q 022967           77 NGPEDVCVDRNGVLY--TAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~--v~~-------~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~  145 (289)
                      ..+.+.++.++|+..  +..       ....|+..+..|....+.. ... .+.-.|+++| .||+...+..+.++. .+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCC-CCCceECCCCCceEEEecCcceEEEeccC
Confidence            456678888888643  331       1235677665444443322 122 3366788985 688876544455544 22


Q ss_pred             --C-eEEEEeccCCcc---ccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEE---EeCCCCeEEE---
Q 022967          146 --G-VTVLASHVNGSR---INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI---  212 (289)
Q Consensus       146 --g-~~~~~~~~~~~~---~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~---~~~~~~~~~~---  212 (289)
                        + +..+.-......   -..+..+.+.+||. |.+...                   ++|+.   ...++|+.+.   
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence              3 322211111111   12477899999994 665432                   23333   2333344332   


Q ss_pred             --eeCCCCC-cceEEEecCCCEEEEEe-CCCCeEEEEEecCCC
Q 022967          213 --LLDSLFF-ANGVALSKDEDYLVVCE-TFKFRCLKYWLKGES  251 (289)
Q Consensus       213 --~~~~~~~-p~gl~~~~d~~~l~v~~-~~~~~i~~~~~~~~~  251 (289)
                        +...+.. +..+.|..++. |++.. .....++++.++|..
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence              3344444 47788998888 55543 344678899988764

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.73  E-value=0.11  Score=46.17  Aligned_cols=144  Identities=15%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CCCEEEEe-cCCeEEEEecCCceEEeeeecCcCcc-----CeEEcCCCc---EEEE-eCC---C--ceEEEe-CCC-eEE
Q 022967           87 NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLL-----GITTTQENE---ILVC-DAD---K--GLLKVT-EEG-VTV  149 (289)
Q Consensus        87 ~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~-----gl~~d~~g~---l~v~-~~~---~--~i~~~~-~~g-~~~  149 (289)
                      ...+++++ .+++++.|+.+|+...... .+++++     |+.+  +|.   |.++ ++.   +  ++|+++ .+| ++.
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            45666555 6678999998887544332 234330     2222  232   4343 432   2  378888 567 665


Q ss_pred             EEeccC--CccccCccceEEc--C-CCcEEEeeCCCccCccccccccceecCCCEE--EEEeC-CCCeE--EEe--eCCC
Q 022967          150 LASHVN--GSRINLADDLIAA--T-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDP-SLNET--SIL--LDSL  217 (289)
Q Consensus       150 ~~~~~~--~~~~~~~~~l~~~--~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i--~~~~~-~~~~~--~~~--~~~~  217 (289)
                      +.....  ...+..+++++.-  + +|.+|+....                ..|.+  |++.. ..+.+  +.+  ....
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~  207 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVG  207 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence            532110  1123346777763  3 5777765432                12333  44432 22322  111  1233


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ..+.|++.+....+||+++-. ..||+|+.+..
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~  239 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPE  239 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred             CcceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence            467899999999999999976 89999998643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.72  E-value=0.013  Score=52.16  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             CCcceEEEccCC-CEE-EEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--eE
Q 022967           77 NGPEDVCVDRNG-VLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VT  148 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~-v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~~  148 (289)
                      .-|.++-+.|++ +++ +|..+++|..+| ..|++ ..+....+..+ .|.|-++|+-+|+..+.. +..++ ..+  ++
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            458888888866 777 788999999999 56653 23333345556 788878888777765543 33333 222  22


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-------CeEEEeeCCCCCcc
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-------NETSILLDSLFFAN  221 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-------~~~~~~~~~~~~p~  221 (289)
                      .+..    ...+..-.+...|+|..+.+...                 .+.|+.+....       +.++-. .-...+.
T Consensus       379 ~i~~----~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh-~vaGys~  436 (503)
T KOG0282|consen  379 NIAD----PEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGH-SVAGYSC  436 (503)
T ss_pred             hhcc----hhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcce-eccCcee
Confidence            2211    12233447788888887666432                 23344443210       111111 1123457


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+.|+|||++|.-.+ ..++++.||....
T Consensus       437 ~v~fSpDG~~l~SGd-sdG~v~~wdwkt~  464 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGD-SDGKVNFWDWKTT  464 (503)
T ss_pred             eEEEcCCCCeEEeec-CCccEEEeechhh
Confidence            789999999665554 5688999987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.63  E-value=0.32  Score=43.40  Aligned_cols=182  Identities=15%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             ceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe--------CCC-e
Q 022967           80 EDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--------EEG-V  147 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~--------~~g-~  147 (289)
                      .+++.++.|.+.++. -.|.||.|. ..|..-.+....-.++|-|.|..||..+++....| +..+.        .++ .
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            456777788877655 778899998 67765443332233444788888888888765443 22221        122 2


Q ss_pred             EEEEeccCCccccCccceEEcCCC---cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967          148 TVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG---~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~  224 (289)
                      ..+.. ..+.. ....+|.+++.|   ++|-+..                  ...+..+|...+.+..-..-...+..++
T Consensus       165 ~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~si~av~  224 (476)
T KOG0646|consen  165 KPLHI-FSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSSIKAVA  224 (476)
T ss_pred             cceee-eccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCcceeEE
Confidence            22211 11111 124466665443   4544322                  1234444544454432223334567889


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCC---C---------c--ceeeeeccCC-CCCCceeeCCCCCEEEEEe
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGES---K---------E--QTEIFVENLP-GGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~---~---------~--~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++|-++.+|+... .+.|+..++.+-.   .         .  +...+...-. ....++++.-||++.++..
T Consensus       225 lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  225 LDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             EcccccEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            9999999999854 5788887764321   1         0  1112221111 1345688888888776654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.61  E-value=0.11  Score=49.36  Aligned_cols=152  Identities=9%  Similarity=0.071  Sum_probs=92.9

Q ss_pred             CcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-eCCC--eEE--
Q 022967           78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-TEEG--VTV--  149 (289)
Q Consensus        78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~~~g--~~~--  149 (289)
                      ..++|++.| |.+.+ .|+-||++..|+ .+-++..|.+...... .+.+.+||...|.....|..++ +..|  +..  
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            356799999 66666 566889999998 5667766665444455 8999999986655445665554 4444  211  


Q ss_pred             EEecc--CCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc---ce
Q 022967          150 LASHV--NGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NG  222 (289)
Q Consensus       150 ~~~~~--~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p---~g  222 (289)
                      .+...  .....+.+.|+.+.|-.  .|.|+...                  .+|-.||.....+..-..++.+.   ..
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence            11111  11112245677776522  57777643                  56778886433332222333333   33


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      -.|+.||+++..+. ..+.||.|+.+.
T Consensus       552 Asfs~Dgk~IVs~s-eDs~VYiW~~~~  577 (712)
T KOG0283|consen  552 ASFSSDGKHIVSAS-EDSWVYIWKNDS  577 (712)
T ss_pred             eeEccCCCEEEEee-cCceEEEEeCCC
Confidence            46888999777664 679999998754

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.58  E-value=0.35  Score=40.30  Aligned_cols=139  Identities=16%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             CEEEEecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCC-CcEEEEeCCCceEEEe-CCCeEEEEeccCCccccCccc
Q 022967           89 VLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADD  164 (289)
Q Consensus        89 ~l~v~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~-g~l~v~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~  164 (289)
                      .+.++..+|.++.++ .+|+ .-.+......-. .-..|.+ |-+|.+.+++..+.+| ...-.++..+..|.-+..|  
T Consensus        65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP--  141 (354)
T KOG4649|consen   65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP--  141 (354)
T ss_pred             EEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc--
Confidence            455788888888888 5663 222221111111 2234444 4688888777788888 3222222234455444444  


Q ss_pred             eEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC------CCCCc----ceEEE-ecCCCEE
Q 022967          165 LIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD------SLFFA----NGVAL-SKDEDYL  232 (289)
Q Consensus       165 l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~------~~~~p----~gl~~-~~d~~~l  232 (289)
                       ++++ +|.||++...                  |.+++.++.......+..      -+..|    ..+.. .-||..+
T Consensus       142 -~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~  202 (354)
T KOG4649|consen  142 -VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLT  202 (354)
T ss_pred             -eecCCCceEEEEecc------------------ceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEE
Confidence             6677 8999998754                  789999887664443321      11111    12222 2366644


Q ss_pred             EEEeCCCCeEEEEEecCC
Q 022967          233 VVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       233 ~v~~~~~~~i~~~~~~~~  250 (289)
                      -+.+.+ ..|+|+...|+
T Consensus       203 ~f~~sG-~qvwr~~t~Gp  219 (354)
T KOG4649|consen  203 SFDESG-RQVWRPATKGP  219 (354)
T ss_pred             EEcCCC-cEEEeecCCCc
Confidence            444444 77787765554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.58  E-value=0.53  Score=42.38  Aligned_cols=142  Identities=10%  Similarity=0.021  Sum_probs=70.9

Q ss_pred             eEEcCCCcEEEEeCCCceEEEeCCC-e--EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967          122 ITTTQENEILVCDADKGLLKVTEEG-V--TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (289)
Q Consensus       122 l~~d~~g~l~v~~~~~~i~~~~~~g-~--~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g  198 (289)
                      +...++|.+++......+++-..+| .  +.+...    ......++.+.++|.+|+....                  |
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~----~~~~l~~v~~~~dg~l~l~g~~------------------G  301 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRA----SARRIQNMGWRADGGLWLLTRG------------------G  301 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCC----CccceeeeeEcCCCCEEEEeCC------------------c
Confidence            3445666666665434455555444 2  333211    1134567788889999987542                  6


Q ss_pred             EEEEEeCCCC-----eEEEeeC--CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967          199 KLLKYDPSLN-----ETSILLD--SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       199 ~i~~~~~~~~-----~~~~~~~--~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  271 (289)
                      .+++-+.++.     ++.....  .......+.+..++. +|++-. ...+++-.-.|++..... .....+..-..+.+
T Consensus       302 ~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~-~G~v~~s~D~G~tW~~~~-~~~~~~~~ly~v~f  378 (398)
T PLN00033        302 GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG-SGILLRSTDGGKSWKRDK-GADNIAANLYSVKF  378 (398)
T ss_pred             eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC-CCcEEEeCCCCcceeEcc-ccCCCCcceeEEEE
Confidence            6666544422     1222211  112245567776666 777632 233444322233222111 01122111235666


Q ss_pred             CCCCCEEEEEeCccccC
Q 022967          272 APDGSFWIAILQVFISN  288 (289)
Q Consensus       272 d~~G~lwv~~~~g~i~~  288 (289)
                      ..++..|+....|-|.+
T Consensus       379 ~~~~~g~~~G~~G~il~  395 (398)
T PLN00033        379 FDDKKGFVLGNDGVLLR  395 (398)
T ss_pred             cCCCceEEEeCCcEEEE
Confidence            67788999887776654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.54  E-value=0.0088  Score=48.90  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=64.2

Q ss_pred             cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe--cCCc-------eEEee-eecCcCccCeEEcCCCcEEEEeC
Q 022967           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNGT-------WENWK-LIGGDTLLGITTTQENEILVCDA  135 (289)
Q Consensus        66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~--~~g~-------~~~~~-~~~~~p~~gl~~d~~g~l~v~~~  135 (289)
                      ....+|..+....=..|++|+.|.||.-..+|.+++..  .++.       .+.+. ..-.... .+.++++|.||+.+.
T Consensus        70 ~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~~  148 (229)
T PF14517_consen   70 SGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAITP  148 (229)
T ss_dssp             HH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEET
T ss_pred             ccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEcC
Confidence            44567777744445589999999999777889998887  2221       12221 1112234 688899999999886


Q ss_pred             CCceEEEe-CCC-----e--EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          136 DKGLLKVT-EEG-----V--TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       136 ~~~i~~~~-~~g-----~--~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                      +..+++.. +++     .  ..++.   +.......-|.+.++|.||..+.                  +|.|||..+.+
T Consensus       149 dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  149 DGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             TE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred             CCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence            55577774 322     1  12221   12223355788899999998853                  48899887654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.52  E-value=0.44  Score=40.70  Aligned_cols=120  Identities=9%  Similarity=0.031  Sum_probs=73.8

Q ss_pred             CeEEcCC---CcEEEEeCCC-ceEEEeCCCeEEEE--eccCCc---cccCccceEEcCCCcEEEeeCCCccCccccc-cc
Q 022967          121 GITTTQE---NEILVCDADK-GLLKVTEEGVTVLA--SHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNWG-LD  190 (289)
Q Consensus       121 gl~~d~~---g~l~v~~~~~-~i~~~~~~g~~~~~--~~~~~~---~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~-~~  190 (289)
                      |+++...   ..||.++..+ +|-.+|.+ +..+.  ....+.   .-..|..|.. -.|+|||+     |..++.. ++
T Consensus       142 GLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVt-----YA~qd~~~~d  214 (336)
T TIGR03118       142 GLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVT-----YAQQDADRND  214 (336)
T ss_pred             eeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCCCCCCCCCCcceEE-ECCeEEEE-----EEecCCcccc
Confidence            7776532   3588888653 35555421 22111  111111   1124555533 35799998     4444333 24


Q ss_pred             cceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEec------CCCEEEEEeCCCCeEEEEEec
Q 022967          191 LLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSK------DEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       191 ~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~------d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      -+.+.+.|.|-.||+++.-++.+..  .+..|.||++.|      .+. |+|.+.+..+|..||..
T Consensus       215 ~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       215 EVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             cccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCC
Confidence            4455677889999998655565654  378899999866      344 99999999999999976

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.48  E-value=0.37  Score=45.00  Aligned_cols=156  Identities=16%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             cceEEEccCCCEE-EEe-cCCeEEEEecCCceEEee--eec--CcCccCeEEcCCCc-EEEEe-CCCceEEEe-CCC-eE
Q 022967           79 PEDVCVDRNGVLY-TAT-RDGWIKRLHKNGTWENWK--LIG--GDTLLGITTTQENE-ILVCD-ADKGLLKVT-EEG-VT  148 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~-~~g~i~~~~~~g~~~~~~--~~~--~~p~~gl~~d~~g~-l~v~~-~~~~i~~~~-~~g-~~  148 (289)
                      =.+-++.|+|++. +++ .+=+|+++.+++.+.+..  ...  ..+.+.+.|..|++ ++++. ....+..+. ... .+
T Consensus       385 Is~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k  464 (691)
T KOG2048|consen  385 ISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK  464 (691)
T ss_pred             eeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh
Confidence            3445677888877 555 566788888766433221  111  11111344433333 33333 223355554 222 22


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~  227 (289)
                      .+....+-..-.....|++.++|+...+-.+                 .|.|+.|+.++++...+...+..+ ..++++|
T Consensus       465 el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~  527 (691)
T KOG2048|consen  465 ELKSIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSP  527 (691)
T ss_pred             hhhccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceeecchhccCcceeeeeccc
Confidence            2222111123345668899999964333222                 478999999988776665343332 3456664


Q ss_pred             -CCCEEEEEeCCCCeEEEEEecCCCC
Q 022967          228 -DEDYLVVCETFKFRCLKYWLKGESK  252 (289)
Q Consensus       228 -d~~~l~v~~~~~~~i~~~~~~~~~~  252 (289)
                       +.+.|.+++ .+++++.||+..+.+
T Consensus       528 ~~~~~lvvat-s~nQv~efdi~~~~l  552 (691)
T KOG2048|consen  528 FVRNRLVVAT-SNNQVFEFDIEARNL  552 (691)
T ss_pred             cccCcEEEEe-cCCeEEEEecchhhh
Confidence             555677775 469999999965443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.45  E-value=0.51  Score=44.11  Aligned_cols=184  Identities=15%  Similarity=0.078  Sum_probs=100.2

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCc-eEEEe-CCC-eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-LLKVT-EEG-VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~-i~~~~-~~g-~~~~~  151 (289)
                      ..-|++++-+.|+|+....+|.|..|| .+++...-.+..+.+.+.|+..+.+. +-|.-. .| ++-++ ..+ ++ +.
T Consensus        70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd-dGvl~~~s~~p~~I~-~~  147 (691)
T KOG2048|consen   70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCD-DGVLYDFSIGPDKIT-YK  147 (691)
T ss_pred             CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecC-CceEEEEecCCceEE-EE
Confidence            456778988899999888899999999 67766555554555555888877664 445422 33 33333 223 21 11


Q ss_pred             eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eCCCCC-c----c
Q 022967          152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDSLFF-A----N  221 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~~~-p----~  221 (289)
                      .... ..-....++.++++|. |..+..                  .|.|..+|...+.....    .+++.. -    -
T Consensus       148 r~l~-rq~sRvLslsw~~~~~~i~~Gs~------------------Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  148 RSLM-RQKSRVLSLSWNPTGTKIAGGSI------------------DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             eecc-cccceEEEEEecCCccEEEeccc------------------CceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence            1111 1112455888889886 444321                  35566677665543221    122222 2    2


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC-CCEEEEEeCccc
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD-GSFWIAILQVFI  286 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~lwv~~~~g~i  286 (289)
                      ++.+-.|+. +.-+| ..+.|..||.+..++.+.  +- ....-...|+++.+ .+++++...+-+
T Consensus       209 Sv~~Lrd~t-I~sgD-S~G~V~FWd~~~gTLiqS--~~-~h~adVl~Lav~~~~d~vfsaGvd~~i  269 (691)
T KOG2048|consen  209 SVLFLRDST-IASGD-SAGTVTFWDSIFGTLIQS--HS-CHDADVLALAVADNEDRVFSAGVDPKI  269 (691)
T ss_pred             EEEEeecCc-EEEec-CCceEEEEcccCcchhhh--hh-hhhcceeEEEEcCCCCeEEEccCCCce
Confidence            344444543 44444 457888887654433221  10 12233445777666 466777666544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.45  E-value=0.44  Score=40.72  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcC-CCcEEEE-eCCCceEEEe-CCC-eEEEEe
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~-~g~l~v~-~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      -.+++..++|+.. .++.+..|..+| .+|....-. -...|.++..+++ +.+..|+ -....-+.++ .++ -+.+..
T Consensus        68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~  146 (405)
T KOG1273|consen   68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK  146 (405)
T ss_pred             eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence            4568888999877 566888898998 566532211 1234444666664 2344443 2222233333 334 333333


Q ss_pred             ccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCC
Q 022967          153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDE  229 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~  229 (289)
                      ..++.-...+....+++.|. ||.++                  ..|.+..|+.++-+...-.  ........+.++..|
T Consensus       147 d~d~dln~sas~~~fdr~g~yIitGt------------------sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  147 DDDGDLNSSASHGVFDRRGKYIITGT------------------SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             CCccccccccccccccCCCCEEEEec------------------CcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence            33332223444457888886 44443                  3489999998754322110  112334456778788


Q ss_pred             CEEEEEeCCCCeEEEEEec
Q 022967          230 DYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~  248 (289)
                      + .++.++..+-|+.|++.
T Consensus       209 ~-~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  209 R-FLIINTSDRVIRTYEIS  226 (405)
T ss_pred             c-EEEEecCCceEEEEehh
Confidence            8 55555777888888865

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.43  E-value=0.14  Score=49.88  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=61.9

Q ss_pred             cceEEEccCCCEEEEe-cCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCce---EEEeCCC-eEEEE
Q 022967           79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGL---LKVTEEG-VTVLA  151 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i---~~~~~~g-~~~~~  151 (289)
                      -.++..+|++.+.++. .++.|..|+ ... ..+++....+.+. |+.||+-|+.+.+..+.+.   |+.++-| .+.+.
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            4457888888888654 678999998 333 3444555567788 9999999998877655543   3333445 33332


Q ss_pred             eccCC-ccccCccceEEcCCCcEEEeeCC
Q 022967          152 SHVNG-SRINLADDLIAATDGSIYFSVAS  179 (289)
Q Consensus       152 ~~~~~-~~~~~~~~l~~~~dG~lyv~~~~  179 (289)
                      ..... ..-.+..-+-+.|||....+...
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecchhh
Confidence            22111 11123446778889977665544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.40  E-value=0.11  Score=45.87  Aligned_cols=142  Identities=15%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             EEccCCC-EE-EEecC--CeEEEEe-cCCceEEeeeecC-cCccCeEEcCCC-cEEEEeCCCceEEEe-CCC-eEEEEec
Q 022967           83 CVDRNGV-LY-TATRD--GWIKRLH-KNGTWENWKLIGG-DTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        83 ~~d~~g~-l~-v~~~~--g~i~~~~-~~g~~~~~~~~~~-~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g-~~~~~~~  153 (289)
                      .+..+|+ |. .++.+  ..++.++ .+++.+.+....+ ... |..+.+++ .+|.......|++++ .+. .+.+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            3445663 44 45433  4578888 6777777665433 244 55554444 455444457899999 665 4444332


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCcc-----CccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKF-----GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~-----~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      ..+  +.......++.|++.++.....+.     .....+.+..+..+..+|+.+|.++|+.+.+...-.+-+-+.++|
T Consensus       121 p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  121 PDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             -TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             Ccc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            221  111123345668887765432111     111233466777788899999999999988766555545555666

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.40  E-value=0.099  Score=49.27  Aligned_cols=105  Identities=11%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             CeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      -+.|+|+.+...+... +.+..+| ..|  ++++...     ......+++.|+|+...+..                 .
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-----~~~V~al~~Sp~Gr~LaSg~-----------------e  597 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-----KGPVTALAFSPCGRYLASGD-----------------E  597 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-----CCceEEEEEcCCCceEeecc-----------------c
Confidence            4788888764444332 4455566 667  5555221     12456899999997555532                 2


Q ss_pred             CCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          197 HGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      .+.|..+|..+++.. .+.+.-.....+.|+.||. ++++....+.|..||+.
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEch
Confidence            466777787665432 2333344567889999999 66666778999999975

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.32  E-value=0.96  Score=42.45  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeec----Cc--------CccCeEEcCCCcEEEEeCCCceEEEe-CCC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG----GD--------TLLGITTTQENEILVCDADKGLLKVT-EEG  146 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~----~~--------p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g  146 (289)
                      +|.||+++.++.|+.+| .+|+..--....    ..        .. ++++. ++++|+++....++.+| .+|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TG  140 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTG  140 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCC
Confidence            68999988888999999 577643211110    00        12 45554 57899988767899999 678

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.28  E-value=0.096  Score=44.11  Aligned_cols=113  Identities=14%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--C----CCC-CcceEEEecCCC
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--D----SLF-FANGVALSKDED  230 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~----~~~-~p~gl~~~~d~~  230 (289)
                      ...+.+.++.++||++|++...  .|.++....         ++-.-.+++.++.+.  +    .+. ..-.++.+.+.+
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy--~G~~~d~pp---------Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g  292 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQY--RGPRNDLPP---------LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG  292 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEe--eCCCccCCc---------ceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence            3456789999999999998643  122221111         111112223333221  0    112 223567777777


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      ++-++.-..++...+|.++..+-....+.     -..|++.+. |-+-|++..|.+.
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~-----daaGva~~~-~gf~vssg~G~~~  343 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVSEAALP-----DAAGVAAAK-GGFAVSSGQGRII  343 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEeccccc-----ccccceecc-CceEEecCCceEE
Confidence            67777667788888887654332111111     123455554 3355566556554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.28  E-value=0.48  Score=43.10  Aligned_cols=108  Identities=16%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             CeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccce
Q 022967          121 GITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       121 gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      ..+|.+||+ |.++...   ..||.+| ..+ ...+... .+.. .   .=.+.|||+ |+|+...              
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~-~---~Ps~spdG~~ivf~Sdr--------------  302 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGIN-T---SPSWSPDGSKIVFTSDR--------------  302 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Cccc-c---CccCCCCCCEEEEEeCC--------------
Confidence            456777885 3334222   2478888 333 4333221 1100 1   225678984 5555332              


Q ss_pred             ecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCC--eEEEEEec
Q 022967          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF--RCLKYWLK  248 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~--~i~~~~~~  248 (289)
                       .+.-.||+++++++..+.+........--.++|||+++.+.....+  .|..+++.
T Consensus       303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence             1234799999998887766555444445578999997777653222  35555553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.25  E-value=0.67  Score=41.81  Aligned_cols=52  Identities=23%  Similarity=0.169  Sum_probs=43.7

Q ss_pred             EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      .|-.||.++++.+....++.+.-.+..++||+.+.+++ .+..|+.+|++..+
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn  434 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN  434 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC
Confidence            67788988899888888888888999999999777775 45889999998653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.24  E-value=0.21  Score=45.32  Aligned_cols=185  Identities=9%  Similarity=0.122  Sum_probs=97.1

Q ss_pred             cceEEEccCC-CEEEEecCCeEEEEecCC---ce---EEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEeCCC--eE
Q 022967           79 PEDVCVDRNG-VLYTATRDGWIKRLHKNG---TW---ENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG--VT  148 (289)
Q Consensus        79 p~~l~~d~~g-~l~v~~~~g~i~~~~~~g---~~---~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~~g--~~  148 (289)
                      -..+++|+.| +++.+..+..|..||-.|   ..   ..+.....++...+.+...|..+++-.++ ....+|.+|  +.
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~  249 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV  249 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence            4458899966 567778888899998444   22   22222234443378888777644443343 355566667  22


Q ss_pred             EEEe------ccCCcccc--CccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee----C
Q 022967          149 VLAS------HVNGSRIN--LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----D  215 (289)
Q Consensus       149 ~~~~------~~~~~~~~--~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~----~  215 (289)
                      .+..      +....+.+  ....-++.|+. ..+++...               .++-+||-++....+..++.    .
T Consensus       250 e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  250 EFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             eeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccCC
Confidence            2211      11111111  12334555543 34444321               23446776665444455442    2


Q ss_pred             CCC-CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCC-CCCCceeeCCCCCEEEE
Q 022967          216 SLF-FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLP-GGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       216 ~~~-~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~-~~p~~i~~d~~G~lwv~  280 (289)
                      +.+ .+..-+|++|++ ++.+.-..+.|..|+..+.. ......+.  ..+ ....+|.+..||++..+
T Consensus       315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             CcccCceeeecCCCcc-hhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhh
Confidence            233 345668999999 46665667888888763221 11111111  111 23456778888876654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.17  E-value=0.67  Score=39.21  Aligned_cols=178  Identities=17%  Similarity=0.164  Sum_probs=99.7

Q ss_pred             cceEEEccCCCEE-EEecCCe--EEEEe-c--CCceEEee---eecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--
Q 022967           79 PEDVCVDRNGVLY-TATRDGW--IKRLH-K--NGTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--  146 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~--i~~~~-~--~g~~~~~~---~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--  146 (289)
                      -+..|+.|.|++. .+--++.  |+.+. .  +|...+..   ...+... ...|-.|+.|..+..+.....+| +.|  
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS-cC~f~dD~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS-CCRFLDDNHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE-EEEEcCCCceEecCCCceEEEEEcccceE
Confidence            3456777877766 4433443  33333 2  34333221   1222222 45565577776655445677777 777  


Q ss_pred             eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~  224 (289)
                      ...+... .+    -..+|.+.| +++.|++-+.               .....||-+  ..+. ...+.....-.|.+.
T Consensus       179 ~~~f~GH-~g----DV~slsl~p~~~ntFvSg~c---------------D~~aklWD~--R~~~c~qtF~ghesDINsv~  236 (343)
T KOG0286|consen  179 TQVFHGH-TG----DVMSLSLSPSDGNTFVSGGC---------------DKSAKLWDV--RSGQCVQTFEGHESDINSVR  236 (343)
T ss_pred             EEEecCC-cc----cEEEEecCCCCCCeEEeccc---------------ccceeeeec--cCcceeEeecccccccceEE
Confidence            4444321 11    244778888 8999998543               123445544  3333 334444555678999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCCEEEEEe
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |.|+|. -+++.+.....+.||+..+.  ....|.. +.-.....+++...|+|..+..
T Consensus       237 ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  237 FFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             EccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeee
Confidence            999998 56776777888889886431  1222221 1112245588888888766643

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.13  E-value=0.86  Score=43.04  Aligned_cols=143  Identities=8%  Similarity=0.022  Sum_probs=79.3

Q ss_pred             CcceEEEccCCC-EEEEecC----CeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CC----
Q 022967           78 GPEDVCVDRNGV-LYTATRD----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EE----  145 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~~~----g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~----  145 (289)
                      .|..++++++|. +|+++.+    +.+..++. +.......   .... ..+..++|+ .|+  .++.+..+| ..    
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf---ni~~-iea~vkdGK~~~V--~gn~V~VID~~t~~~~  309 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF---NIAR-IEEAVKAGKFKTI--GGSKVPVVDGRKAANA  309 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE---chHH-HHHhhhCCCEEEE--CCCEEEEEECCccccC
Confidence            688888888665 5566422    23334431 11111111   1000 112224564 444  246688888 44    


Q ss_pred             C--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCe------------E
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------T  210 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~------------~  210 (289)
                      +  +...+.  .   -+.|.++.++|||+ +|++...                 ...+-.+|..+.+            +
T Consensus       310 ~~~v~~yIP--V---GKsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        310 GSALTRYVP--V---PKNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             CcceEEEEE--C---CCCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceE
Confidence            3  222222  1   14789999999995 6776543                 2345555544211            1


Q ss_pred             EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          211 SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       211 ~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ..-..-...|-..+|+.+|+ .|.+-.....|.+|+++.
T Consensus       368 vaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            11112245677789999987 999988889999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.13  E-value=0.14  Score=48.86  Aligned_cols=146  Identities=17%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             cceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEec
Q 022967           79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      -.++++|.-+++.++. .+|-+..|+-.++.-.-....+.+.+++..+....+++. .....|..+| ...  ++.+.  
T Consensus       496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--  573 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--  573 (910)
T ss_pred             eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--
Confidence            4568888866766554 566555566333321111111222225555443333332 2234566666 322  22221  


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                        |. .+..+++++.|||+..++...                 .+.|..+|.-++...-...-..-+..+.++|.|++|-
T Consensus       574 --gh-~nritd~~FS~DgrWlisasm-----------------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  574 --GH-GNRITDMTFSPDGRWLISASM-----------------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             --cc-ccceeeeEeCCCCcEEEEeec-----------------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence              11 135779999999997666432                 3567777765555432211223356789999999888


Q ss_pred             EEeCCCCeEEEEE
Q 022967          234 VCETFKFRCLKYW  246 (289)
Q Consensus       234 v~~~~~~~i~~~~  246 (289)
                      .+..+.+.|+.|.
T Consensus       634 T~Hvd~~gIylWs  646 (910)
T KOG1539|consen  634 TVHVDQNGIYLWS  646 (910)
T ss_pred             EEEecCceEEEEE
Confidence            8888888898775

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.13  E-value=1  Score=41.03  Aligned_cols=130  Identities=11%  Similarity=0.025  Sum_probs=67.1

Q ss_pred             eEEEEecCCc-eEEeeeecCcCccCeEEcCCCc----EEEEeCC--CceEEEe-CCC-eEEEEeccCCccccCccceEEc
Q 022967           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE----ILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA  168 (289)
Q Consensus        98 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~----l~v~~~~--~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~  168 (289)
                      +|+..+.||. ...+........ .-++.+||+    +|++...  ..|+..+ ..| .+.+.. ..+    ......+.
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g----~~~~p~wS  239 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG----NQLMPTFS  239 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC----CccceEEC
Confidence            4566665553 222222222223 567888884    2344432  3588888 555 555533 222    12346899


Q ss_pred             CCC-cEEEeeCCCccCccccccccceecCCCEEEE--EeCCC---CeEEEeeCC-CCCcceEEEecCCCEEEEEeC--CC
Q 022967          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSL---NETSILLDS-LFFANGVALSKDEDYLVVCET--FK  239 (289)
Q Consensus       169 ~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~---~~~~~~~~~-~~~p~gl~~~~d~~~l~v~~~--~~  239 (289)
                      ||| .|.++...  .             +...++.  ++.++   ++.+.+..+ .......+|+|||+.|+++..  +.
T Consensus       240 PDG~~Laf~s~~--~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~  304 (428)
T PRK01029        240 PRKKLLAFISDR--Y-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR  304 (428)
T ss_pred             CCCCEEEEEECC--C-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence            999 46554321  0             1112333  34332   333333332 223345789999997776543  33


Q ss_pred             CeEEEEEec
Q 022967          240 FRCLKYWLK  248 (289)
Q Consensus       240 ~~i~~~~~~  248 (289)
                      .+|++++++
T Consensus       305 ~~ly~~~~~  313 (428)
T PRK01029        305 PRIYIMQID  313 (428)
T ss_pred             ceEEEEECc
Confidence            468888765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.25  Score=43.42  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=79.5

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEec
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      ..+++..+|.+. ++..+|.+..++ ++-.. .......+... .|.|.+||.+.++-.......++ .+|  +....+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence            446676666655 555677676666 43321 11223345566 99999999877765444444444 455  4333221


Q ss_pred             cCCccccCccceEEcCCC---cEEEeeCCCccCccccccccceecCCCEEEEEeCC--CC----eEEEeeCCCCCcceEE
Q 022967          154 VNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN----ETSILLDSLFFANGVA  224 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG---~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~----~~~~~~~~~~~p~gl~  224 (289)
                      .....+.   .+-+..|+   .+++.+...               +.++|..++..  .+    +.............++
T Consensus       227 ~k~~~~~---~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  227 SKDEMFS---SCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA  288 (398)
T ss_pred             ccchhhh---hceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence            1111222   22333333   667665431               22344443321  11    1111223344567889


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEec
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ++.||+.+-+. +..+.|..|+..
T Consensus       289 VS~dGkf~AlG-T~dGsVai~~~~  311 (398)
T KOG0771|consen  289 VSDDGKFLALG-TMDGSVAIYDAK  311 (398)
T ss_pred             EcCCCcEEEEe-ccCCcEEEEEec
Confidence            99999966666 557888888754

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=96.08  E-value=0.0056  Score=31.21  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=14.7

Q ss_pred             CCCceeeCCCCCEEEEEeC
Q 022967          265 GPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       265 ~p~~i~~d~~G~lwv~~~~  283 (289)
                      ....|..|++|+||||+.+
T Consensus         6 ~I~~i~~D~~G~lWigT~~   24 (24)
T PF07494_consen    6 NIYSIYEDSDGNLWIGTYN   24 (24)
T ss_dssp             CEEEEEE-TTSCEEEEETS
T ss_pred             eEEEEEEcCCcCEEEEeCC
Confidence            3456899999999999863

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.06  E-value=0.46  Score=41.63  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCCCEEEEEeCCC
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      ..+.+.+.|||+...+...                 ...|-..+.++|++..... ....-.-++|+.|.+ |.|+.+..
T Consensus       369 lVn~V~fSPd~r~IASaSF-----------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkD  430 (480)
T KOG0271|consen  369 LVNHVSFSPDGRYIASASF-----------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKD  430 (480)
T ss_pred             heeeEEECCCccEEEEeec-----------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCC
Confidence            5788999999976555432                 2345556766676543333 333345689999888 99998988


Q ss_pred             CeEEEEEecCCCC
Q 022967          240 FRCLKYWLKGESK  252 (289)
Q Consensus       240 ~~i~~~~~~~~~~  252 (289)
                      ..|-.|++..+++
T Consensus       431 sTLKvw~V~tkKl  443 (480)
T KOG0271|consen  431 STLKVWDVRTKKL  443 (480)
T ss_pred             ceEEEEEeeeeee
Confidence            9999999876543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.00  E-value=0.51  Score=41.74  Aligned_cols=149  Identities=14%  Similarity=0.094  Sum_probs=85.4

Q ss_pred             cceEEEccCCCEE-EEecCC--eEEEEecCCceEEeeee--cCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDG--WIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g--~i~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~  150 (289)
                      -+.+.+..+|+-. .++.+-  .|+.+..|+++.....-  ...|+.-|.+.||.+-.++ ....-+...| ..| ....
T Consensus       227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~  306 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL  306 (519)
T ss_pred             EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence            3445666666644 333332  24444466664332221  1234337888998875554 3334466667 566 3222


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC--cceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF--ANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~--p~gl~~~~d  228 (289)
                      ....   -...+...++-|||.=+|+.+                 +...++.+|.++... .-..+.+.  -..+++++|
T Consensus       307 y~~~---~~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  307 YPSG---LGFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             cccC---cCCCcceeEEccCCceeEecC-----------------CCCcEEEecCCcchh-hcccccccceeEEEEEcCC
Confidence            2211   113566788999996666533                 236788898885432 22233333  356889999


Q ss_pred             CCEEEEEeCCCCeEEEEEecC
Q 022967          229 EDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      |++++.... ...|..|+...
T Consensus       366 gk~vl~v~~-d~~i~l~~~e~  385 (519)
T KOG0293|consen  366 GKYVLLVTV-DKKIRLYNREA  385 (519)
T ss_pred             CcEEEEEec-ccceeeechhh
Confidence            999998864 47788887654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.94  E-value=2  Score=42.60  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=79.2

Q ss_pred             ceEEEcc-CCC-EEEEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcC-CCcEEEEeCCC-ceEEEe-CCC--eEEE
Q 022967           80 EDVCVDR-NGV-LYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVT-EEG--VTVL  150 (289)
Q Consensus        80 ~~l~~d~-~g~-l~v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~-~i~~~~-~~g--~~~~  150 (289)
                      .++++.+ ++. |.++..+|.|..|+ .+++. ..+....+... ++++++ ++.++++.... .+..+| ..+  +..+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            4566665 344 44666889999998 44443 22322233445 899985 67766665444 455566 455  3333


Q ss_pred             EeccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE--EEeeCCCCCcceEEEec
Q 022967          151 ASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSK  227 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~~~~~~~p~gl~~~~  227 (289)
                      ..  .    .....+.+. ++|.++++..                 ..+.|..+|......  ..+.........+.|. 
T Consensus       615 ~~--~----~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-  670 (793)
T PLN00181        615 KT--K----ANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-  670 (793)
T ss_pred             ec--C----CCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence            21  1    123456664 4676555432                 246788888764431  2222222233566776 


Q ss_pred             CCCEEEEEeCCCCeEEEEEec
Q 022967          228 DEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +++.++ +-...+.|..||+.
T Consensus       671 ~~~~lv-s~s~D~~ikiWd~~  690 (793)
T PLN00181        671 DSSTLV-SSSTDNTLKLWDLS  690 (793)
T ss_pred             CCCEEE-EEECCCEEEEEeCC
Confidence            566444 44556788888875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.93  E-value=1  Score=39.21  Aligned_cols=146  Identities=12%  Similarity=0.062  Sum_probs=79.2

Q ss_pred             eEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC-e-EEEEecc
Q 022967           81 DVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG-V-TVLASHV  154 (289)
Q Consensus        81 ~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g-~-~~~~~~~  154 (289)
                      +++.+|+.++. ++..+..-+.|+ .+|.+..-....+..++.+.|..+|.+.++..-.| ++.+. ..| . ..+....
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~  148 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV  148 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence            46677766666 334566667776 45553221111222223788888887766543344 44444 445 2 2222111


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLV  233 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~  233 (289)
                           .-..-|...|.+.+.++-.                 ..|.+|.+....+....+..+...| +-=.|.|||+.+.
T Consensus       149 -----~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  149 -----EDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             -----CceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence                 1223456677777666532                 2466777765543333333332222 2226889999777


Q ss_pred             EEeCCCCeEEEEEecC
Q 022967          234 VCETFKFRCLKYWLKG  249 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~  249 (289)
                      .... ...|.+|++..
T Consensus       207 tgy~-dgti~~Wn~kt  221 (399)
T KOG0296|consen  207 TGYD-DGTIIVWNPKT  221 (399)
T ss_pred             EEec-CceEEEEecCC
Confidence            7755 58899998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=95.88  E-value=0.2  Score=44.89  Aligned_cols=176  Identities=13%  Similarity=0.195  Sum_probs=92.8

Q ss_pred             eEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEe-CCCceEEEe-CCC--eEEEEec
Q 022967           81 DVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCD-ADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        81 ~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~-~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      ++.+..+|.=+ .+..+..|..+| .+|+...--.....|. -+-+.+++ +++++. ....|..+| ..|  +..+   
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---  338 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---  338 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---
Confidence            34555555544 334555566666 4565433222233344 67788877 677664 335688888 555  2222   


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeC-CCCCcceEEEecCCCE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLD-SLFFANGVALSKDEDY  231 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~-~~~~p~gl~~~~d~~~  231 (289)
                        +..+...++|.+-++|+=+++...                 ...+..++-+..... ...+ .....-.+..+|.++ 
T Consensus       339 --d~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-  398 (503)
T KOG0282|consen  339 --DRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-  398 (503)
T ss_pred             --HhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-
Confidence              122346778899999987777543                 123333332211111 1111 122223467889888 


Q ss_pred             EEEEeCCCCeEEEEEecCC-CCcceeeeec-cCCCCCCceeeCCCCCEEEE
Q 022967          232 LVVCETFKFRCLKYWLKGE-SKEQTEIFVE-NLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~  280 (289)
                      .+++.+..+.|++|..... .+...+.|.. ..+|++-.+.+..||.+.+.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S  449 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS  449 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence            5667777899999876533 2223333321 22345555555555544443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.88  E-value=1  Score=38.91  Aligned_cols=183  Identities=19%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeeecCc----CccCeEEcCCCcEEEEeCCCceEEEeCCC--eEE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGD----TLLGITTTQENEILVCDADKGLLKVTEEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~----p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~  149 (289)
                      ....+|++..+.+-|+.-..+.|++=..-| .++........    .+..+.++. .+.|++.....+++-.+.|  .+.
T Consensus        17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG~~g~ll~T~DgG~tW~~   95 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVGEPGLLLHTTDGGKTWER   95 (302)
T ss_dssp             S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEEETTEEEEESSTTSS-EE
T ss_pred             CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecC-CceEEEcCCceEEEecCCCCCcEE
Confidence            456677887666777544556666554323 34433222111    122566653 4677775423344444545  554


Q ss_pred             EEe--ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEe
Q 022967          150 LAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALS  226 (289)
Q Consensus       150 ~~~--~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~  226 (289)
                      +..  ..++    .+..+....++.+++...                  .|.||+=.-.+...+.+.. ....-+.+..+
T Consensus        96 v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   96 VPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             ----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred             eecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence            421  2222    233455555566655432                  2667776544444554432 22334556677


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      +||+++.|+..  ..+++-.-.|..  ..+.+...-.....++.++++|++|+.+.+|.+
T Consensus       154 ~dG~~vavs~~--G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~  209 (302)
T PF14870_consen  154 SDGRYVAVSSR--GNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQI  209 (302)
T ss_dssp             TTS-EEEEETT--SSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEE
T ss_pred             CCCcEEEEECc--ccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCCcEE
Confidence            89986666643  444433222321  112222122234566888999999999866654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.84  E-value=0.65  Score=39.74  Aligned_cols=29  Identities=21%  Similarity=0.155  Sum_probs=23.0

Q ss_pred             cceEEEec--CCCEEEEEeCCCCeEEEEEec
Q 022967          220 ANGVALSK--DEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       220 p~gl~~~~--d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ..|+++..  .+.+||.++..+++|-+||-.
T Consensus       140 YkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       140 YKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             eeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            46777764  367899999999999999743

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.82  E-value=1  Score=40.37  Aligned_cols=150  Identities=9%  Similarity=0.096  Sum_probs=81.9

Q ss_pred             cCCcceEEEccCCCEE-EEecCCeEEEEe------c--CCceEEee--eecCcCccCeEEcC---CCcEEEEeCCCceEE
Q 022967           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH------K--NGTWENWK--LIGGDTLLGITTTQ---ENEILVCDADKGLLK  141 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~------~--~g~~~~~~--~~~~~p~~gl~~d~---~g~l~v~~~~~~i~~  141 (289)
                      +..-.++.+..||.++ .+..||.|+.|.      +  ++....+.  .....+.+.+..+.   +.+||-+..++.+..
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~  202 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL  202 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence            3445667777777766 555778887776      1  22221111  11223444555553   346777765555555


Q ss_pred             Ee-CCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEe-------------
Q 022967          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD-------------  204 (289)
Q Consensus       142 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~-------------  204 (289)
                      ++ ..|  +..+..  +    ..+..+++||-+ .+|++...                  |.|+..+             
T Consensus       203 wdlS~g~LLlti~f--p----~si~av~lDpae~~~yiGt~~------------------G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  203 WDLSLGVLLLTITF--P----SSIKAVALDPAERVVYIGTEE------------------GKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             EEeccceeeEEEec--C----CcceeEEEcccccEEEecCCc------------------ceEEeeehhcCCcccccccc
Confidence            66 555  332222  1    356788999965 58887543                  3333332             


Q ss_pred             ----CCCCeEEEeeCCCC--CcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          205 ----PSLNETSILLDSLF--FANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       205 ----~~~~~~~~~~~~~~--~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                          .++-++..+..+-.  ...-++++-||. |.++-...+.+.+||+...
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence                11112222222222  445688999998 5555555688888887643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.78  E-value=0.51  Score=41.95  Aligned_cols=100  Identities=21%  Similarity=0.452  Sum_probs=52.2

Q ss_pred             CcceEEE--cc-CCCEE--EEecCCeEEEEe----cCCce-----EEeeeecCcCccCeEEcC-CCcEEEEeCCCceEEE
Q 022967           78 GPEDVCV--DR-NGVLY--TATRDGWIKRLH----KNGTW-----ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKV  142 (289)
Q Consensus        78 ~p~~l~~--d~-~g~l~--v~~~~g~i~~~~----~~g~~-----~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~i~~~  142 (289)
                      .|++++.  ++ +|.+|  +...+|.+..+.    .+|.+     +.| .....+- |+++|. .|.||+++...|||++
T Consensus       157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y  234 (381)
T PF02333_consen  157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPE-GCVVDDETGRLYVGEEDVGIWRY  234 (381)
T ss_dssp             SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EE-EEEEETTTTEEEEEETTTEEEEE
T ss_pred             cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcce-EEEEecccCCEEEecCccEEEEE
Confidence            3555554  33 57777  445667776654    24432     222 2234566 899984 5789999988999999


Q ss_pred             e--CCC--eEEEEeccCCcccc-CccceEE--cCC--CcEEEeeCC
Q 022967          143 T--EEG--VTVLASHVNGSRIN-LADDLIA--ATD--GSIYFSVAS  179 (289)
Q Consensus       143 ~--~~g--~~~~~~~~~~~~~~-~~~~l~~--~~d--G~lyv~~~~  179 (289)
                      +  +++  ...++....+..+. -..+|++  ..+  |.|.+++..
T Consensus       235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             ecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence            9  333  33333322332221 2345554  344  457777643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.76  E-value=0.7  Score=41.58  Aligned_cols=199  Identities=13%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             CCCEEEEe-cCCeEEEEe--cCC---ceEEeee--------ecCcCccCeEEcCCCcEEEEeCC-------CceEEEeCC
Q 022967           87 NGVLYTAT-RDGWIKRLH--KNG---TWENWKL--------IGGDTLLGITTTQENEILVCDAD-------KGLLKVTEE  145 (289)
Q Consensus        87 ~g~l~v~~-~~g~i~~~~--~~g---~~~~~~~--------~~~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~~~  145 (289)
                      ...|++-. ..++|+.+|  .|-   ++.+..+        ....|+ -...-++|+++|+.-+       .+++.+|.+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            34677655 778999999  232   2333222        124566 5556688999997321       358888855


Q ss_pred             CeEEEEec-cCCccccCccceEEcCCCcEEEeeCCCccCccccc------cccceecCCCEEEEEeCCCCeEEEeeCCC-
Q 022967          146 GVTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG------LDLLEAKPHGKLLKYDPSLNETSILLDSL-  217 (289)
Q Consensus       146 g~~~~~~~-~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~------~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-  217 (289)
                      .+++.... .........+++-..|..++-++..   |+.+..+      .++..+.-...|..+|-.+.+.....+-. 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            43332221 2222345677999999888888864   5544322      23333333457888998877776654322 


Q ss_pred             --CCcceEE--EecCCCEEEEEeCCCCeEEEEEec-CCCCcceeee-ec----------cC-------CCCCCceeeCCC
Q 022967          218 --FFANGVA--LSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIF-VE----------NL-------PGGPDNIKLAPD  274 (289)
Q Consensus       218 --~~p~gl~--~~~d~~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~-~~----------~~-------~~~p~~i~~d~~  274 (289)
                        ..|-.+.  .+|+..+-||...-+..|++|..+ +......++. +.          .+       +.++..|.+.-|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence              2344444  456677788877778889988773 2221111110 00          11       456677666655


Q ss_pred             C-CEEEEEeCccccCC
Q 022967          275 G-SFWIAILQVFISNQ  289 (289)
Q Consensus       275 G-~lwv~~~~g~i~~~  289 (289)
                      . .|||+++.-|-.+|
T Consensus       323 DrfLYvs~W~~Gdvrq  338 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQ  338 (461)
T ss_dssp             S-EEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCcEEE
Confidence            5 78999998776655

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=95.74  E-value=0.99  Score=37.63  Aligned_cols=148  Identities=16%  Similarity=0.231  Sum_probs=79.7

Q ss_pred             CcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEeCCCeEEEEec
Q 022967           78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASH  153 (289)
Q Consensus        78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~~~g~~~~~~~  153 (289)
                      ..+.++.++ .-.++ ++..+..|.+++ ..++...-....+.-+ -+.+.++|. +.+.+....|..+|....++... 
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~-  143 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNE-  143 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeeh-
Confidence            345577777 44555 666777888888 4555443333334444 577777775 44445445666666211111111 


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCE--EEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                        .......+.+.+..++.++|.+.+                 .|.  |+.| |.-+.+..+.....+..-|.|+|+|++
T Consensus       144 --~~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsy-psLkpv~si~AH~snCicI~f~p~Gry  203 (313)
T KOG1407|consen  144 --EQFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSY-PSLKPVQSIKAHPSNCICIEFDPDGRY  203 (313)
T ss_pred             --hcccceeeeeeecCCCCEEEEecC-----------------CceEEEEec-cccccccccccCCcceEEEEECCCCce
Confidence              011134567778777888877543                 233  4455 221222222222334456789999996


Q ss_pred             EEEEeCCCCeEEEEEec
Q 022967          232 LVVCETFKFRCLKYWLK  248 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~  248 (289)
                      +-+. .....+..+|++
T Consensus       204 fA~G-sADAlvSLWD~~  219 (313)
T KOG1407|consen  204 FATG-SADALVSLWDVD  219 (313)
T ss_pred             Eeec-cccceeeccChh
Confidence            6555 333556666655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=95.73  E-value=1  Score=37.81  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=93.4

Q ss_pred             EEEEecCCeEEEEe---cC---CceEE-eeeecCcCccCeEEcCCCcEEEEeCCCceEE-Ee-CCC--eEEEEeccCCcc
Q 022967           90 LYTATRDGWIKRLH---KN---GTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSR  158 (289)
Q Consensus        90 l~v~~~~g~i~~~~---~~---g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~-~~-~~g--~~~~~~~~~~~~  158 (289)
                      ++-++.+-.+..++   .|   |...+ +........ +++..+||+..++....+..| .| ..|  .+++....    
T Consensus        31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~----  105 (315)
T KOG0279|consen   31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT----  105 (315)
T ss_pred             EEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC----
Confidence            33455666676665   12   22222 222233444 888889999888876666554 56 666  44554321    


Q ss_pred             ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCC-CEEEEE
Q 022967          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDE-DYLVVC  235 (289)
Q Consensus       159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~-~~l~v~  235 (289)
                       .-..++++++|.+-.++...                 ...|..++..+.......++  -..-+-+.|+|.. +-.+++
T Consensus       106 -~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen  106 -KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             -CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence             23568899999887776432                 24566666654433333333  4566788999976 434455


Q ss_pred             eCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                      ......|..+|+++-.+..  .|. ...++..-+++..||.+-..
T Consensus       168 ~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcas  209 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCAS  209 (315)
T ss_pred             ccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEec
Confidence            5556677778876543321  222 22234455666666666544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.60  E-value=2.1  Score=40.28  Aligned_cols=162  Identities=15%  Similarity=0.066  Sum_probs=81.6

Q ss_pred             EEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC----cCcc-CeEEcCCCcEEEEeC------CCceEEEe-CCC-e
Q 022967           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG----DTLL-GITTTQENEILVCDA------DKGLLKVT-EEG-V  147 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~----~p~~-gl~~d~~g~l~v~~~------~~~i~~~~-~~g-~  147 (289)
                      +++. ++++|+++.+++++.+| .+|+...-.....    ...+ .-.+ .++.+|+...      ...++.+| .+| .
T Consensus       116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            3443 57899999899999999 5787543221111    1110 1222 2567887643      13477788 677 3


Q ss_pred             EEEEeccCCc----------------------------cccCccceEEcC-CCcEEEeeCCCccCcccccccccee--cC
Q 022967          148 TVLASHVNGS----------------------------RINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEA--KP  196 (289)
Q Consensus       148 ~~~~~~~~~~----------------------------~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~--~~  196 (289)
                      ..-....+..                            .-..-..+.+|+ .|.||+..+.-   .+ +......+  ..
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp---~p-~~~~~r~gdnl~  269 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP---SP-WNSHLRPGDNLY  269 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC---CC-CCCCCCCCCCcc
Confidence            2221111100                            001112468888 46799987531   00 11000001  12


Q ss_pred             CCEEEEEeCCCCeEEEee----C---CC---CCcceEEEecCCC--EEEEEeCCCCeEEEEEecC
Q 022967          197 HGKLLKYDPSLNETSILL----D---SL---FFANGVALSKDED--YLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~----~---~~---~~p~gl~~~~d~~--~l~v~~~~~~~i~~~~~~~  249 (289)
                      ...|+.+|.++|++.-..    .   +.   ..|.-+.+..+|+  .+++.-+.+..++.+|..+
T Consensus       270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            347999999999875321    1   11   2222222324554  3555555666677777653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=95.57  E-value=0.53  Score=39.87  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             eEEEccCCCEEEEe-cCCeEEEEecCCceEEe---eeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC
Q 022967           81 DVCVDRNGVLYTAT-RDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG  146 (289)
Q Consensus        81 ~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g  146 (289)
                      .+.++|+|..+++. .+..|+.|+..|..+.+   ....+..+ ++.+.+|++..+ +..+..++.+| ..|
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccc
Confidence            36788899988554 67788888855544333   23345567 888888887555 44557788899 667

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.45  E-value=1.5  Score=39.52  Aligned_cols=146  Identities=11%  Similarity=0.066  Sum_probs=81.8

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEEEe
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      ..-.+++...+|.+. ++..+|.+..|+.+|...........|+..|.+.++|+..++ ..++.+..+| ..| ..+...
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            456778888889887 677889888888888654333323344448888888875554 3335677778 667 443322


Q ss_pred             ccCCccccCc-cceEEcCCCcEEEeeCCCccCccccccccceecCCCE--EEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          153 HVNGSRINLA-DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       153 ~~~~~~~~~~-~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      -..     .+ .++.+-.+..+-.+.                  ..+.  |++++.+ .-+..+...-.-.+.|.|+|.+
T Consensus       316 ~~s-----~~~lDVdW~~~~~F~ts~------------------td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg  371 (524)
T KOG0273|consen  316 FHS-----APALDVDWQSNDEFATSS------------------TDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTG  371 (524)
T ss_pred             ecc-----CCccceEEecCceEeecC------------------CCceEEEEEecCC-CcceeeecccCceEEEEECCCC
Confidence            111     12 233333332222221                  1233  4444443 2222333333445778888888


Q ss_pred             CEEEEEeCCCCeEEEEEe
Q 022967          230 DYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~  247 (289)
                      . |..+.+...++..|..
T Consensus       372 ~-LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  372 S-LLASCSDDGTLKIWSM  388 (524)
T ss_pred             c-eEEEecCCCeeEeeec
Confidence            7 6666666666666653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.37  E-value=0.29  Score=44.42  Aligned_cols=153  Identities=13%  Similarity=0.095  Sum_probs=85.5

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCc---eE-Ee--eeecCcCccCeEEcCCCcEEEEeCC-CceEEEeC---C
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT---WE-NW--KLIGGDTLLGITTTQENEILVCDAD-KGLLKVTE---E  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~---~~-~~--~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~---~  145 (289)
                      ..|...+++++|.+. .+..+|.|..|+..+.   .. .+  +...+.-.+.|.|..||+.+.+-.. ..+-.+|-   +
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            357888999999987 5668999999984221   11 11  1222223348999999987776433 22333331   1


Q ss_pred             C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C--CCCcc
Q 022967          146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S--LFFAN  221 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~--~~~p~  221 (289)
                      . +.+... .. .. .--.+.+|.||..|.++-.+...+           ...|.|+.||+.+  +..+.. .  -....
T Consensus       398 kpL~~~tg-L~-t~-~~~tdc~FSPd~kli~TGtS~~~~-----------~~~g~L~f~d~~t--~d~v~ki~i~~aSvv  461 (641)
T KOG0772|consen  398 KPLNVRTG-LP-TP-FPGTDCCFSPDDKLILTGTSAPNG-----------MTAGTLFFFDRMT--LDTVYKIDISTASVV  461 (641)
T ss_pred             cchhhhcC-CC-cc-CCCCccccCCCceEEEecccccCC-----------CCCceEEEEeccc--eeeEEEecCCCceEE
Confidence            2 221111 11 01 112367999999999987653322           2345688888753  333221 1  12224


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      .+.|+|.=+.++++ ++++.+.+|.
T Consensus       462 ~~~WhpkLNQi~~g-sgdG~~~vyY  485 (641)
T KOG0772|consen  462 RCLWHPKLNQIFAG-SGDGTAHVYY  485 (641)
T ss_pred             EEeecchhhheeee-cCCCceEEEE
Confidence            45788866666666 4556666653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.27  E-value=0.52  Score=41.31  Aligned_cols=142  Identities=11%  Similarity=0.093  Sum_probs=80.9

Q ss_pred             cCccCeEEcCCCcEEEEeCCCceEEE-e-CCCeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccccee
Q 022967          117 DTLLGITTTQENEILVCDADKGLLKV-T-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (289)
Q Consensus       117 ~p~~gl~~d~~g~l~v~~~~~~i~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~  194 (289)
                      ..+ .++|.++|...++..+..-+|+ | ......+.  ..+ -.+....+++.|||....+..                
T Consensus       117 ~Vl-~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--~Kg-H~~WVlcvawsPDgk~iASG~----------------  176 (480)
T KOG0271|consen  117 AVL-SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--CKG-HKNWVLCVAWSPDGKKIASGS----------------  176 (480)
T ss_pred             cEE-EEEecCCCceEEecCCCceEEeeccCCCCccee--ecC-CccEEEEEEECCCcchhhccc----------------
Confidence            345 7889899988887665444443 4 22210000  111 124677899999998766533                


Q ss_pred             cCCCEEEEEeCCCCeEE--EeeCCCCCcceEEEec-----CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 022967          195 KPHGKLLKYDPSLNETS--ILLDSLFFANGVALSK-----DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPD  267 (289)
Q Consensus       195 ~~~g~i~~~~~~~~~~~--~~~~~~~~p~gl~~~~-----d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~  267 (289)
                       ..|.|..+||++|+-.  .+...-....+++|-|     ..+ .+.+.+..+.+.++|.....   ..........-..
T Consensus       177 -~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~---~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  177 -KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT---CVRTLSGHTASVT  251 (480)
T ss_pred             -cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce---EEEEeccCccceE
Confidence             3588999999877532  2333345567777765     344 66777778889988875431   1111111112233


Q ss_pred             ceeeCCCCCEEEEEeC
Q 022967          268 NIKLAPDGSFWIAILQ  283 (289)
Q Consensus       268 ~i~~d~~G~lwv~~~~  283 (289)
                      ++.-..+|.||-+..+
T Consensus       252 CvrwGG~gliySgS~D  267 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQD  267 (480)
T ss_pred             EEEEcCCceEEecCCC
Confidence            4445555666655544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.25  E-value=1.3  Score=41.65  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCC
Q 022967          121 GITTTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g  198 (289)
                      .++.=+++ .|++.......++-..|  ++.+...     ....+++++-+++.+.=+..                  .|
T Consensus       145 Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gH-----tD~VRgL~vl~~~~flScsN------------------Dg  200 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGH-----TDCVRGLAVLDDSHFLSCSN------------------DG  200 (745)
T ss_pred             eeeecCCC-cEEeccCcceeeeccCCchhhhhccc-----hhheeeeEEecCCCeEeecC------------------Cc
Confidence            44444555 66765555555555334  4444221     12567888888765443321                  35


Q ss_pred             EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      .|.+.+.++..+..+...-.+-..+....+++ ++++....+.+..|+
T Consensus       201 ~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  201 SIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWK  247 (745)
T ss_pred             eEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEee
Confidence            67777776555555544444555566455555 677755555555554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=95.18  E-value=0.28  Score=45.65  Aligned_cols=146  Identities=18%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             ceEEEcc--CCCEEEEecCCeEEEEe--cCCce------EEeeeec-CcCccCeEEcCCC--cEEEEeCCCceEEEe-CC
Q 022967           80 EDVCVDR--NGVLYTATRDGWIKRLH--KNGTW------ENWKLIG-GDTLLGITTTQEN--EILVCDADKGLLKVT-EE  145 (289)
Q Consensus        80 ~~l~~d~--~g~l~v~~~~g~i~~~~--~~g~~------~~~~~~~-~~p~~gl~~d~~g--~l~v~~~~~~i~~~~-~~  145 (289)
                      .++..||  +.+|-|++.+|+|..|.  .+|-.      +...... .... .|.|++--  -|.++..+..|-.+| .+
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhh
Confidence            4466777  45788888888775555  44421      1111111 2233 66776422  233444334455556 44


Q ss_pred             C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCC--Cc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLF--FA  220 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~--~p  220 (289)
                      +  ...+... .    ....++++.|||+...+...                 .|+|..|.|..++..+... +..  ..
T Consensus       710 ~~~~~~l~gH-t----dqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRg  767 (1012)
T KOG1445|consen  710 AKLYSRLVGH-T----DQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRG  767 (1012)
T ss_pred             hhhhheeccC-c----CceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcc
Confidence            4  2223221 1    24679999999998776543                 5889999998665433321 111  11


Q ss_pred             ceEEEecCCCEEEEEeCC---CCeEEEEEec
Q 022967          221 NGVALSKDEDYLVVCETF---KFRCLKYWLK  248 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~---~~~i~~~~~~  248 (289)
                      ..|.|.-||+.++++...   .++|..|+..
T Consensus       768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             eeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            235666678866666432   3456666643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.06  E-value=1.8  Score=36.44  Aligned_cols=154  Identities=16%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             CcceEEEccCCCEE--EE--ecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE--e-CCC-eEE
Q 022967           78 GPEDVCVDRNGVLY--TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--T-EEG-VTV  149 (289)
Q Consensus        78 ~p~~l~~d~~g~l~--v~--~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~--~-~~g-~~~  149 (289)
                      .+...++.++|..+  +.  .....++....++....... ..... .-.+|.+|.+|+++......++  + .+| ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~-g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT-GGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc-CCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            56777888888755  33  23345666655555444332 22233 6779999999999765443222  2 344 332


Q ss_pred             EEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEE----eCCCC-e------EEEeeCCC
Q 022967          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSLN-E------TSILLDSL  217 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~----~~~~~-~------~~~~~~~~  217 (289)
                      ..-....... ....|.+++|| ++-+....               ...++|+.-    +.+ + .      .+......
T Consensus       103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~---------------~~~~~v~va~V~r~~~-g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen  103 VEVDWPGLRG-RITALRVSPDGTRVAVVVED---------------GGGGRVYVAGVVRDGD-GVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             EEecccccCC-ceEEEEECCCCcEEEEEEec---------------CCCCeEEEEEEEeCCC-CCcceeccceEeccccc
Confidence            2111111110 56789999999 44433211               012344432    222 2 1      11111224


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEE-EEecCC
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLK-YWLKGE  250 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~-~~~~~~  250 (289)
                      .....++|..++..++++......+.. +..+|.
T Consensus       166 ~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             CcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence            456788999888855556555555655 555553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.02  E-value=0.086  Score=30.52  Aligned_cols=42  Identities=12%  Similarity=-0.005  Sum_probs=28.8

Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  272 (289)
                      ||+++||+++...+.|..+|......  .. .+ .....|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~--~~-~i-~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV--IA-TI-PVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE--EE-EE-ECCCCCceEEeC
Confidence            57889999999999999998754321  11 22 223568887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.01  E-value=0.16  Score=29.73  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CcEEEeeCCCccCccccccccceecCCC-EEEEEeCCCCeEE-EeeCCCCCcceEEEec
Q 022967          171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETS-ILLDSLFFANGVALSK  227 (289)
Q Consensus       171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~  227 (289)
                      ++||++|..                 .. .|.+.+.++...+ .+...+..|.||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            579999976                 24 7888888876644 4467799999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.96  E-value=2.3  Score=37.16  Aligned_cols=167  Identities=12%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             cCCcceEEEcc--CCCEEEEecCCeEEEEe--cCCceEEeeeec----CcCcc--CeEEcCCCcEEEEeCCCceEEEe-C
Q 022967           76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWKLIG----GDTLL--GITTTQENEILVCDADKGLLKVT-E  144 (289)
Q Consensus        76 ~~~p~~l~~d~--~g~l~v~~~~g~i~~~~--~~g~~~~~~~~~----~~p~~--gl~~d~~g~l~v~~~~~~i~~~~-~  144 (289)
                      +.-|-|..+=|  +.+++.-+.+|++..+.  .+|+........    ..|..  ......++.+|+......++.++ .
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence            45566654444  45666778999998776  577654322111    12210  11122345677766555688888 3


Q ss_pred             CC-eEEEEec--c------CCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          145 EG-VTVLASH--V------NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       145 ~g-~~~~~~~--~------~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                      .. .+.....  .      .+-+-..-.-+++.+ .++||+.-..   +. .+.+.    .+.-.||.+|.++++...-.
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~---g~-~gsHK----dpgteVWv~D~~t~krv~Ri  285 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ---GG-EGSHK----DPGTEVWVYDLKTHKRVARI  285 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE------TT-TT----S-EEEEEEEETTTTEEEEEE
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC---CC-CCCcc----CCceEEEEEECCCCeEEEEE
Confidence            32 3322211  0      111112334578875 6789985321   10 01110    12236999999987654332


Q ss_pred             CCCCCcceEEEecCCC-EEEEEeCCCCeEEEEEecCC
Q 022967          215 DSLFFANGVALSKDED-YLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~-~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .......+|+++.|.+ .||..+.....|.+||..+.
T Consensus       286 ~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  286 PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            2222345899998887 66667777789999997653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.91  E-value=0.095  Score=30.73  Aligned_cols=40  Identities=10%  Similarity=0.021  Sum_probs=29.7

Q ss_pred             EEEEEeCCCC-eEEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967          231 YLVVCETFKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (289)
Q Consensus       231 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  273 (289)
                      .||++|...+ .|.+-+++|..   .+..+...-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            5999999999 99999988853   3333333335799999983

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.86  E-value=1.6  Score=41.40  Aligned_cols=147  Identities=12%  Similarity=0.120  Sum_probs=86.1

Q ss_pred             EEEccCCCEEEEecCCeEEEEe-cCCceE-Eeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEecc
Q 022967           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHV  154 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~  154 (289)
                      ++++++|...+....++|..++ .+|+.. .+.. ......+.+++++|+.+.++....++.++-  +.|  ++......
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H  104 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH  104 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence            8999999876555566788887 666653 1111 112223378888888655554445555543  556  33221111


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCC-EE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDED-YL  232 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~-~l  232 (289)
                      .+    -...++++|-|.+.-+ ++                ..+.+..+|-+.+..+....+...+ ..+.|+|+-. ++
T Consensus       105 e~----Pvi~ma~~~~g~LlAt-gg----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~l  163 (775)
T KOG0319|consen  105 EA----PVITMAFDPTGTLLAT-GG----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWL  163 (775)
T ss_pred             CC----CeEEEEEcCCCceEEe-cc----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhh
Confidence            11    1347899998865444 32                2466666676666666555554444 5567887554 34


Q ss_pred             EEEeCCCCeEEEEEecC
Q 022967          233 VVCETFKFRCLKYWLKG  249 (289)
Q Consensus       233 ~v~~~~~~~i~~~~~~~  249 (289)
                      .++......++.||+..
T Consensus       164 L~sg~~D~~v~vwnl~~  180 (775)
T KOG0319|consen  164 LASGATDGTVRVWNLND  180 (775)
T ss_pred             eeecCCCceEEEEEccc
Confidence            45555568899999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.82  E-value=0.59  Score=41.37  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=82.0

Q ss_pred             eEEEccCCCEEEEe-cCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEeCCC-e-EEEEecc
Q 022967           81 DVCVDRNGVLYTAT-RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG-V-TVLASHV  154 (289)
Q Consensus        81 ~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~~~g-~-~~~~~~~  154 (289)
                      .+.+.||.+-.+++ .+.-+..+| ..|.. ..+..+.+...+..++-+||.=+|+. ....++.++.+| + ...    
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W----  349 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW----  349 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc----
Confidence            35666766655555 233355666 34432 22333323332278888998655554 346688888666 3 211    


Q ss_pred             CCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967          155 NGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                      .+-+.....++++.+||. ++.....                  -.+..|+..+..-..+...-.....+.++.|++ +.
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~  410 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGK-LA  410 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCCCc-EE
Confidence            111223467999999996 4443321                  245555543221111222233346678999999 55


Q ss_pred             EEeCCCCeEEEEEecCC
Q 022967          234 VCETFKFRCLKYWLKGE  250 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~  250 (289)
                      ..+...+.+.-||+...
T Consensus       411 LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  411 LVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             EEEcccCeeEEeecchh
Confidence            66677799999998754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=94.76  E-value=0.67  Score=39.76  Aligned_cols=147  Identities=11%  Similarity=0.031  Sum_probs=82.5

Q ss_pred             EEccCCCEE-EEecCCeEEEEe-cCCceEEeee------ecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC--eEEE
Q 022967           83 CVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL------IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (289)
Q Consensus        83 ~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~------~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~  150 (289)
                      ..+|+-++| ++..+.-|..++ -+|+......      .-...+ .+.|.+||.-.++...+.|..++  .-|  ..+.
T Consensus       118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcch
Confidence            335567788 444677788888 5776553211      112456 89999999866666556666677  234  2222


Q ss_pred             EeccCC-c-cccCccceEEcCC-C-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEE
Q 022967          151 ASHVNG-S-RINLADDLIAATD-G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVAL  225 (289)
Q Consensus       151 ~~~~~~-~-~~~~~~~l~~~~d-G-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~  225 (289)
                      .....+ . .......+++.|- - .+-+.....                +-+|+.-+  +++.-.+.. ......-+.|
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q----------------~~giy~~~--~~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ----------------RVGIYNDD--GRRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecccc----------------eeeeEecC--CCCceeeecccCCCeeeEEe
Confidence            111111 1 1123445677763 2 333333221                12344433  233322222 2233455688


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEec
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      .+||+.||...+....|.+||+.
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccCcCeecccccCCCeEEEEeeh
Confidence            99999999998888999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.74  E-value=2.7  Score=40.27  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             EEEccCCCEEEEecCCeEEEEecC--CceEEeeeecCcCccCeEEcC-CCcEEEEeCCCc-eEEEe-CCC-eEEEEeccC
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVT-EEG-VTVLASHVN  155 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~--g~~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~-i~~~~-~~g-~~~~~~~~~  155 (289)
                      |....++.|..+.-|..|..|++.  .-+..|.. ..... .++|.| |.+.+++..-.+ +..++ .+. +... .+..
T Consensus       375 lSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~  451 (712)
T KOG0283|consen  375 LSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLR  451 (712)
T ss_pred             cccccCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCcEeecccccceEEeecCcCeeEee-hhhh
Confidence            555556667766677777777642  22344432 33444 899986 456777643333 33333 333 2211 1111


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eCC-----CCCcceEEEe
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDS-----LFFANGVALS  226 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~-----~~~p~gl~~~  226 (289)
                          ..+..++..|||...|.-.                 .+|.+..|+..+.++..-    ...     .....|+.+.
T Consensus       452 ----~lITAvcy~PdGk~avIGt-----------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  452 ----DLITAVCYSPDGKGAVIGT-----------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             ----hhheeEEeccCCceEEEEE-----------------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence                3567899999996444322                 247777888765544321    110     1245788887


Q ss_pred             c-CCCEEEEEeCCCCeEEEEEecCC
Q 022967          227 K-DEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       227 ~-d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      | +-+.+.|+ +...+|++||....
T Consensus       511 p~~~~~vLVT-SnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  511 PGDPDEVLVT-SNDSRIRIYDGRDK  534 (712)
T ss_pred             CCCCCeEEEe-cCCCceEEEeccch
Confidence            6 33357777 56799999997433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.72  E-value=2.8  Score=37.06  Aligned_cols=142  Identities=14%  Similarity=0.220  Sum_probs=78.8

Q ss_pred             eEEcCCCc-EEEE--eCCC---ceEEEe-CCC-eEEEEeccCCccccCccceEEc-CCC--cEEEeeCCCccCccccccc
Q 022967          122 ITTTQENE-ILVC--DADK---GLLKVT-EEG-VTVLASHVNGSRINLADDLIAA-TDG--SIYFSVASTKFGLHNWGLD  190 (289)
Q Consensus       122 l~~d~~g~-l~v~--~~~~---~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~-~dG--~lyv~~~~~~~~~~~~~~~  190 (289)
                      +.+.+++. |++.  ++.+   .++.+| ..| .+.+.......=......+.+- +++  .+|++...           
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-----------  257 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-----------  257 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-----------
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC-----------
Confidence            34445555 6654  2222   255556 456 5444433222222223344443 444  35555421           


Q ss_pred             cceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCC----CCeEEEEEec-CCCCcceeeeeccCCC
Q 022967          191 LLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETF----KFRCLKYWLK-GESKEQTEIFVENLPG  264 (289)
Q Consensus       191 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~  264 (289)
                           +-..|+.++.+++..+.+..+-... .-+.++++++.+|+....    .+.|++.+++ +..   .+.+. .. .
T Consensus       258 -----G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT-~~-~  327 (353)
T PF00930_consen  258 -----GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLT-CE-D  327 (353)
T ss_dssp             -----SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESS-TT-S
T ss_pred             -----CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEecc-CC-C
Confidence                 3457999999987766655444333 346789999999988764    4578998877 432   22222 21 1


Q ss_pred             CCC-ceeeCCCCCEEEEEeCc
Q 022967          265 GPD-NIKLAPDGSFWIAILQV  284 (289)
Q Consensus       265 ~p~-~i~~d~~G~lwv~~~~g  284 (289)
                      ... .+.+.++|.++|-+.++
T Consensus       328 ~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  328 GDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             STTEEEEE-TTSSEEEEEEES
T ss_pred             CCceEEEECCCCCEEEEEEcC
Confidence            233 68899999988877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.70  E-value=0.43  Score=40.85  Aligned_cols=107  Identities=14%  Similarity=0.268  Sum_probs=58.4

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEe--CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      .+.|..|+.-..+.......|+.  ++|  ++.+-..     -...+...+.+||+-.++..+                 
T Consensus       311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-----sSyvn~a~ft~dG~~iisaSs-----------------  368 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-----SSYVNEATFTDDGHHIISASS-----------------  368 (508)
T ss_pred             EEEEccCcchhhcccccceEEEeccccchhHHHhcCc-----cccccceEEcCCCCeEEEecC-----------------
Confidence            67787777543443334566776  455  3332111     135678889999987776544                 


Q ss_pred             CCEEEEEeCCCCeEEE-ee--CCCCCcceEEEec-CCCEEEEEeCCCCeEEEEEecCC
Q 022967          197 HGKLLKYDPSLNETSI-LL--DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~-~~--~~~~~p~gl~~~~-d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .|.+-.++.++.+... +.  ......|.+.+-| .-.++.|++. .+.|++.++.|.
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ  425 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ  425 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence            3556666655443211 11  1112234444444 3445666654 478888887764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.68  E-value=4.1  Score=38.65  Aligned_cols=56  Identities=9%  Similarity=0.096  Sum_probs=35.1

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD  134 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~  134 (289)
                      --.++++.|||.=.+-..+++++.+| .+|... .+...-.... -+++..||+.+.+.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG   71 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASG   71 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccC
Confidence            45668999999766555677899999 466432 2222222334 66777777776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.53  E-value=1.1  Score=43.73  Aligned_cols=150  Identities=15%  Similarity=0.217  Sum_probs=82.7

Q ss_pred             CCcceEEEcc-CCCEEEEe--cCCeEEEEe-cCCce-EEeeeecCcCccCeEEc------CCCcEEEEeCCCceEEEeC-
Q 022967           77 NGPEDVCVDR-NGVLYTAT--RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVTE-  144 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l~v~~--~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d------~~g~l~v~~~~~~i~~~~~-  144 (289)
                      ..|..+.... +.++.+-+  ..+.|+++| ..|++ +.|......++..++-+      ....-|++-..++++++|+ 
T Consensus       481 ~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  481 FTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             cCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence            3455544433 44555433  346788888 56653 44433222212122221      1234677766689999993 


Q ss_pred             -CCeEEEEeccCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-c
Q 022967          145 -EGVTVLASHVNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-N  221 (289)
Q Consensus       145 -~g~~~~~~~~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~  221 (289)
                       .|-..+...... ...+.-..++.+.+|+|.|+..                  .|.|-.||.-+.+......++..| .
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence             341111111100 1112234778888999998864                  377777886544444444565555 6


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      +|.++.||+|+..+..  .-|..++
T Consensus       623 ~iDvt~DGkwilaTc~--tyLlLi~  645 (794)
T PF08553_consen  623 GIDVTADGKWILATCK--TYLLLID  645 (794)
T ss_pred             EEEecCCCcEEEEeec--ceEEEEE
Confidence            8999999998777743  3344454

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=94.51  E-value=1.3  Score=38.64  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             eEEEcc-CCCEEEEecCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-e-EEEEecc
Q 022967           81 DVCVDR-NGVLYTATRDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EEG-V-TVLASHV  154 (289)
Q Consensus        81 ~l~~d~-~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~-~~~~~~~  154 (289)
                      .+.+.+ ++.++.++-++.|..|| ..|+........ .... .++.+++.+++.+...+.+-.++ +.| + ..+    
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl----  356 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL----  356 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----
Confidence            345555 78899888889999998 566543322222 2344 67777877777765545566666 666 2 221    


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee------CCCCC---cceEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------DSLFF---ANGVAL  225 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~------~~~~~---p~gl~~  225 (289)
                      .+ .....+.|.+..||.++.+.                  .+|.|+.+|-++|---...      ..+..   ....+|
T Consensus       357 sg-h~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f  417 (460)
T KOG0285|consen  357 SG-HNAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF  417 (460)
T ss_pred             cc-ccceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence            11 11246678888887655442                  2467888876654211111      11111   122367


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEec
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +..|..|+-++.. ..|-.|.-+
T Consensus       418 Dktg~rlit~ead-KtIk~~keD  439 (460)
T KOG0285|consen  418 DKTGSRLITGEAD-KTIKMYKED  439 (460)
T ss_pred             cccCceEEeccCC-cceEEEecc
Confidence            7777767666554 556555443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.49  E-value=3.1  Score=36.45  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeC
Q 022967          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      +.....|...+||..+++...                ....|...|++++....+. .++..-.-+.|+||+++|+.+.-
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence            345678999999999988653                2356888899888766554 44444455789999998777743


Q ss_pred             CCCeEEEEE
Q 022967          238 FKFRCLKYW  246 (289)
Q Consensus       238 ~~~~i~~~~  246 (289)
                        .++++.+
T Consensus       259 --davfrlw  265 (445)
T KOG2139|consen  259 --DAVFRLW  265 (445)
T ss_pred             --cceeeee
Confidence              4555555

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=94.46  E-value=2.9  Score=35.99  Aligned_cols=53  Identities=8%  Similarity=-0.038  Sum_probs=32.9

Q ss_pred             CEEEEEeCCCCeEEEeeCC----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC
Q 022967          198 GKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK  252 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~  252 (289)
                      +.++..+..+.-++.+..+    ..+.+ -+++|.|+|+|.... ...+|+|.....++
T Consensus       415 ntv~imn~qGQvVrsfsSGkREgGdFi~-~~lSpkGewiYcigE-D~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  415 NTVYIMNMQGQVVRSFSSGKREGGDFIN-AILSPKGEWIYCIGE-DGVLYCFSVLSGKL  471 (508)
T ss_pred             CeEEEEeccceEEeeeccCCccCCceEE-EEecCCCcEEEEEcc-CcEEEEEEeecCce
Confidence            5566666664333444322    23323 468999999998843 47889998765444

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.43  E-value=0.76  Score=40.97  Aligned_cols=90  Identities=17%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             CCCEEEEecCCeEEEEec-CCceEEeeeecC--cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccC
Q 022967           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINL  161 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~~--~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~  161 (289)
                      +|+||+++.++.++.++. +|+........+  .-. +-.+..++.+|+......++.++ .+| ...............
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            899999999999999996 787654433333  122 33333578888885446699999 557 433322111011112


Q ss_pred             ccceEEcCCCcEEEeeC
Q 022967          162 ADDLIAATDGSIYFSVA  178 (289)
Q Consensus       162 ~~~l~~~~dG~lyv~~~  178 (289)
                      ..... ..+|.+|++..
T Consensus       190 ~~~~~-~~~~~vy~~~~  205 (370)
T COG1520         190 YGSPA-IASGTVYVGSD  205 (370)
T ss_pred             ccCce-eecceEEEecC
Confidence            22222 56788888854

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.41  E-value=0.64  Score=41.28  Aligned_cols=82  Identities=16%  Similarity=0.020  Sum_probs=46.0

Q ss_pred             CCEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC--CceeeCC
Q 022967          197 HGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP--DNIKLAP  273 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~  273 (289)
                      ...+|.+|.++++.+++-++- .+..|..++++.+.+|.... .+.|+++|+++.+.  ..++. ....+.  .....++
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~--~~vy~-~p~~~~g~gt~v~n~  134 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEE--RVVYE-VPDDWKGYGTWVANS  134 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--E--EEEEE---TTEEEEEEEEE-T
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcE--EEEEE-CCcccccccceeeCC
Confidence            457999999999998886643 33447788898888866543 37899999886432  22222 111222  1244577


Q ss_pred             CCCEEEEEe
Q 022967          274 DGSFWIAIL  282 (289)
Q Consensus       274 ~G~lwv~~~  282 (289)
                      |++..++..
T Consensus       135 d~t~~~g~e  143 (386)
T PF14583_consen  135 DCTKLVGIE  143 (386)
T ss_dssp             TSSEEEEEE
T ss_pred             CccEEEEEE
Confidence            888888764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=94.31  E-value=2.5  Score=40.78  Aligned_cols=148  Identities=15%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEecCC------ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCCeEEE
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL  150 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g~~~~  150 (289)
                      .+.++.+.++.. +++.+|+|..+..-|      ..+.+........ +++|..+|....+....+++..-  ..+.+.+
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            446777777766 666889999997333      2334444445667 99999898644443224444433  3332223


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------------CC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LF  218 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------------~~  218 (289)
                      .+...    ....++.+.||+.+|-....                 .+.|..+...+-+......+            -.
T Consensus       288 LPRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  288 LPRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             ccccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            22222    13458899999988765432                 23344443321111111111            23


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+.++.++|--+ -.+-+...+.|+.||+-.+
T Consensus       347 l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  347 LTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             cceeEEEcCCCC-ceeecCCCceEEEEecccc
Confidence            456778888444 2333345678888887544

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=94.27  E-value=2.5  Score=42.34  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=102.7

Q ss_pred             CCCEEEE-ecCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCCc-eEEEeCCC-e-EEEEeccCCccc
Q 022967           87 NGVLYTA-TRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEEG-V-TVLASHVNGSRI  159 (289)
Q Consensus        87 ~g~l~v~-~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~~-i~~~~~~g-~-~~~~~~~~~~~~  159 (289)
                      ++.+|-. .....|.+...++.....  ......+- ++++|. .+++|.+|.... +...+.+| . .+++...    +
T Consensus       448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l  522 (877)
T KOG1215|consen  448 NNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----L  522 (877)
T ss_pred             CCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----C
Confidence            4455533 356667777655543332  33344577 999985 447999987643 33333455 3 3333321    1


Q ss_pred             cCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCCEEEEEeC
Q 022967          160 NLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       160 ~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      ..+..++++| .|.+|+++-..                ..++.|-..++..... +..+...|+|++.+-..+.+|+++.
T Consensus       523 ~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~  586 (877)
T KOG1215|consen  523 DLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA  586 (877)
T ss_pred             CCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence            3578899999 67899998541                1245565565444333 3445789999999988888999998


Q ss_pred             CCC-eEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967          238 FKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       238 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  279 (289)
                      ... .+...+.+|....   .........|..+++-.+..+|.
T Consensus       587 ~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~~~~iyw~  626 (877)
T KOG1215|consen  587 KLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVFEDYIYWT  626 (877)
T ss_pred             cCCcceeeeecCCCceE---EeccccCCCceEEEEecceeEEe
Confidence            877 6888887764221   12212224577777766544443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.15  E-value=3  Score=35.00  Aligned_cols=178  Identities=10%  Similarity=0.067  Sum_probs=93.9

Q ss_pred             EEEccCCCEEEEec-CCeEEEEe-cCCc-eEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC--eEEEEecc
Q 022967           82 VCVDRNGVLYTATR-DGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLASHV  154 (289)
Q Consensus        82 l~~d~~g~l~v~~~-~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g--~~~~~~~~  154 (289)
                      |-.+.+|.|.+++. +...-+|- .+|+ +-.+....+... .+.+|.+.+..++.. ++.+..+| +.|  +-.+... 
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-   93 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-   93 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-
Confidence            45566888876663 33333333 3564 333333334444 666666655555533 35566666 677  2222111 


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-------CCe-EEEeeCCCCCcceEEEe
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNE-TSILLDSLFFANGVALS  226 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~-~~~~~~~~~~p~gl~~~  226 (289)
                           .....+.++.+|++.+......-|            ..+.|..+|..       ..+ +..+...-..++...|+
T Consensus        94 -----~~Vk~~~F~~~gn~~l~~tD~~mg------------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   94 -----SPVKRVDFSFGGNLILASTDKQMG------------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             -----CeeEEEeeccCCcEEEEEehhhcC------------cceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence                 235677888888754433221111            12334444433       122 22333334567778899


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |-++.++.. .....|.+||.... .+.+...   ......++|...++..++|...
T Consensus       157 ~l~~~ii~G-he~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s  209 (327)
T KOG0643|consen  157 PLGETIIAG-HEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGS  209 (327)
T ss_pred             ccCCEEEEe-cCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEecc
Confidence            999955444 55689999998643 1111100   1112456677778888877654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.13  E-value=1.4  Score=39.72  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             cCCcceEEEccCCCE-EEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967           76 LNGPEDVCVDRNGVL-YTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l-~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~  151 (289)
                      -.+|..+-...+|+- .++...|.|..+| .++++..-........ .+.|-.+..+|.+.-.+-++.+|.+|  +..+-
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk  207 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK  207 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence            468999999888875 4777889999998 5665432111111222 33332232222222123455565555  22221


Q ss_pred             eccCCcccc-Cccce---EEcCCCcEEEeeCCC-----ccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------
Q 022967          152 SHVNGSRIN-LADDL---IAATDGSIYFSVAST-----KFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------  216 (289)
Q Consensus       152 ~~~~~~~~~-~~~~l---~~~~dG~lyv~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------  216 (289)
                      ....-..+. .|+.+   +.+..|.+=.-|-++     .+....-...++..++.+.|..+.-.+|.+......      
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence            111000000 11111   111223221111110     000000011334455555666665544544433221      


Q ss_pred             -----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          217 -----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       217 -----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                           ...-++|+++++|.++ ++....+.+.+||+..
T Consensus       288 KiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHHhcCCCcceEEECCCCcEE-eecccccceeEeeecc
Confidence                 2233689999999843 4434467888898864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.12  E-value=0.63  Score=42.22  Aligned_cols=136  Identities=10%  Similarity=0.055  Sum_probs=71.8

Q ss_pred             CeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceec
Q 022967          121 GITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAK  195 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~  195 (289)
                      .|++.+|.++-++-.. ..|..+| .+.  ++.+....+     ....|.+.+|| +||-+--                 
T Consensus       514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGl-----------------  571 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGL-----------------  571 (705)
T ss_pred             hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCC-----------------
Confidence            5677778777665433 4466677 554  444422222     45688999999 5775432                 


Q ss_pred             CCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967          196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  275 (289)
                       .+.|..+|...++-..-.+-....-.+...|.++||.|. +.+..+.+....+.  .++..-  ....-.-.+.+..-|
T Consensus       572 -DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp--~kyqlh--lheScVLSlKFa~cG  645 (705)
T KOG0639|consen  572 -DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKP--EKYQLH--LHESCVLSLKFAYCG  645 (705)
T ss_pred             -ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee-cccCcEEEEecCCc--cceeec--ccccEEEEEEecccC
Confidence             245666665433211111111122344566888888877 44566766654432  111110  111122345666778


Q ss_pred             CEEEEEeCc
Q 022967          276 SFWIAILQV  284 (289)
Q Consensus       276 ~lwv~~~~g  284 (289)
                      .+||++-..
T Consensus       646 kwfvStGkD  654 (705)
T KOG0639|consen  646 KWFVSTGKD  654 (705)
T ss_pred             ceeeecCch
Confidence            888877543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.10  E-value=3.8  Score=37.02  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCc--eEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-CCC-eEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g-~~~~  150 (289)
                      ....++.+-.||+|. +++..|.|..+|..-+  +..+ .....|..-+.|.+.+ .++++..+.++.++. .++ ..++
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~  147 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA  147 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE
Confidence            345556666678877 5556677777772110  1111 1122333255666544 566655556666665 444 3221


Q ss_pred             EeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d  228 (289)
                       . ..+.. -..+..++.| ++.|.++-+.                 .|.|-.+|.......++.-+-..| ..+.+-|.
T Consensus       148 -~-l~~ht-DYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps  207 (487)
T KOG0310|consen  148 -E-LSGHT-DYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSRVVELNHGCPVESVLALPS  207 (487)
T ss_pred             -E-ecCCc-ceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence             1 11111 1455566665 5678777442                 466666665543222222222233 33455566


Q ss_pred             CCEEEEEeCCCCeEEEEEec
Q 022967          229 EDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~  248 (289)
                      |. ++++. +.+.+.+||+.
T Consensus       208 gs-~iasA-gGn~vkVWDl~  225 (487)
T KOG0310|consen  208 GS-LIASA-GGNSVKVWDLT  225 (487)
T ss_pred             CC-EEEEc-CCCeEEEEEec
Confidence            65 66664 55889999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.05  E-value=2.2  Score=42.09  Aligned_cols=139  Identities=17%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecC--C------------ceEEe------eeecCcCccCeEEcCCCcEEEEeC-C
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN--G------------TWENW------KLIGGDTLLGITTTQENEILVCDA-D  136 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~--g------------~~~~~------~~~~~~p~~gl~~d~~g~l~v~~~-~  136 (289)
                      -.++-+.+||..+ .|..+.-|..+..+  |            ..+.|      ....+... .+.+++++.++++-. +
T Consensus        72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEeccc
Confidence            4556688888755 66666555555522  1            11222      12223445 788899888777643 3


Q ss_pred             CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       137 ~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      +.|..++ ...  ++++...     ...+.|+.+||-|..+.+...                 ...|..++..+-.++..
T Consensus       151 nsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  151 NSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             ceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeEe
Confidence            6688887 332  4444221     235789999999987666543                 22333333222222222


Q ss_pred             eCC-------CCCcceEEEecCCCEEEEEeCCCC
Q 022967          214 LDS-------LFFANGVALSKDEDYLVVCETFKF  240 (289)
Q Consensus       214 ~~~-------~~~p~gl~~~~d~~~l~v~~~~~~  240 (289)
                      ..+       ..+-..+.|+|||++|-.....++
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            111       112245789999998877665443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.70  E-value=0.89  Score=38.82  Aligned_cols=135  Identities=13%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             ceEEEccCCCEEE-EecCCeEEEEecCC-----ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-eCCCeEEEEe
Q 022967           80 EDVCVDRNGVLYT-ATRDGWIKRLHKNG-----TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-TEEGVTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~v-~~~~g~i~~~~~~g-----~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~~~g~~~~~~  152 (289)
                      ..+.+.|...+.+ +..++.|-.+|-..     ....+. ...... .|.|++.|++..+...+-+.|+ |-+-.+-++.
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceee-eEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            3466666556653 44667777776211     111111 122334 8999999986655445544443 3111233333


Q ss_pred             ccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEe--eCCCCCcceEEEecC
Q 022967          153 HVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL--LDSLFFANGVALSKD  228 (289)
Q Consensus       153 ~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~--~~~~~~p~gl~~~~d  228 (289)
                      ..+...+ .....+.-.+.|+||++...                 .|.|-.+|.-.++. +.+  +.+....-...|+.+
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            2222222 24556777889999998653                 46666666443321 111  122222334567777


Q ss_pred             CCEEE
Q 022967          229 EDYLV  233 (289)
Q Consensus       229 ~~~l~  233 (289)
                      ++++.
T Consensus       317 ~kyiL  321 (430)
T KOG0640|consen  317 GKYIL  321 (430)
T ss_pred             CeEEe
Confidence            77443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.50  E-value=5.7  Score=35.98  Aligned_cols=178  Identities=11%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             EEcc-CCCEEEEecCCeEEEEe-cCCceEEe--eeecCcCccCeEEc-CCCcEEEEeCCCceEEEeCCC--eEEEEeccC
Q 022967           83 CVDR-NGVLYTATRDGWIKRLH-KNGTWENW--KLIGGDTLLGITTT-QENEILVCDADKGLLKVTEEG--VTVLASHVN  155 (289)
Q Consensus        83 ~~d~-~g~l~v~~~~g~i~~~~-~~g~~~~~--~~~~~~p~~gl~~d-~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~  155 (289)
                      .+.+ ++.+++...++++.++. .++.....  .......- ..++. .++.+.++..+.|.+|+-...  -..+..-..
T Consensus       117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             EecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence            3444 56677666666676665 44433211  11112233 23333 355688887776655554111  112211111


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE--eeCCCCCcceEEEecCCCEEE
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~p~gl~~~~d~~~l~  233 (289)
                      +   .....+.+-|.|.+.++.++                  ..+-.+|.-+|....  .......-..+.+..++..|+
T Consensus       196 g---~pVe~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  196 G---CPVESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             C---CceeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence            2   12457778888888888654                  234445554333222  222333446677887887666


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCcccc
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVFIS  287 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~i~  287 (289)
                      -+ .-.+.+.+|+...-+...  .+  ..++-.-.+++.+++ ++.+|+.+|.++
T Consensus       255 S~-sLD~~VKVfd~t~~Kvv~--s~--~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  255 SG-SLDRHVKVFDTTNYKVVH--SW--KYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ec-ccccceEEEEccceEEEE--ee--ecccceeeEEecCCCceEEEecccceee
Confidence            66 445778888744321111  11  112222346665554 789998888764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.44  E-value=3.2  Score=36.69  Aligned_cols=141  Identities=17%  Similarity=0.193  Sum_probs=76.1

Q ss_pred             EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccCCccccCccceEE
Q 022967           92 TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIA  167 (289)
Q Consensus        92 v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~  167 (289)
                      .+..++.|..|+ .+|....-........ .+.|..||.++++... ..|..+| ..| +........|   ..+.-..+
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raif  224 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIF  224 (472)
T ss_pred             hccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---CCcceeEE
Confidence            334566777777 4554333233444556 7889899998887654 4566677 455 3221111111   23344556


Q ss_pred             cCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE---EecCCCEEEEEeCCCCeEEE
Q 022967          168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA---LSKDEDYLVVCETFKFRCLK  244 (289)
Q Consensus       168 ~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~---~~~d~~~l~v~~~~~~~i~~  244 (289)
                      -.+|.+ ++++.++...+             .+-..|++.-+.-.....+...+|+.   +++|.+.+|++.-+...|+-
T Consensus       225 l~~g~i-~tTGfsr~seR-------------q~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  225 LASGKI-FTTGFSRMSER-------------QIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             eccCce-eeecccccccc-------------ceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            667774 44443222111             12223443211111223344456653   57899999999888888877


Q ss_pred             EEecCC
Q 022967          245 YWLKGE  250 (289)
Q Consensus       245 ~~~~~~  250 (289)
                      |.+..+
T Consensus       291 yEit~d  296 (472)
T KOG0303|consen  291 FEITNE  296 (472)
T ss_pred             EEecCC
Confidence            776544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=93.41  E-value=0.79  Score=40.48  Aligned_cols=145  Identities=12%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             EEEccCC-CEEEEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCC
Q 022967           82 VCVDRNG-VLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNG  156 (289)
Q Consensus        82 l~~d~~g-~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~  156 (289)
                      |...|+| +|.+++..|....++... .++.+......++..+.+..+|...|+....|.+++- .+=  +..+..    
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a----  177 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA----  177 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH----
Confidence            4556665 467777777777775211 1222222223444488888888887876656666665 221  222211    


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCCCCCcceEEEecCCCEEEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFANGVALSKDEDYLVVC  235 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~~p~gl~~~~d~~~l~v~  235 (289)
                      ..-...++++++|+...|++...                 .+.|...|-.-. +-.++.....-+..++|+|... |+++
T Consensus       178 hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias  239 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS  239 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence            11135789999997777776542                 355555554322 2223344456678899999877 6666


Q ss_pred             eCCCCeEEEEEec
Q 022967          236 ETFKFRCLKYWLK  248 (289)
Q Consensus       236 ~~~~~~i~~~~~~  248 (289)
                      -...+-|..+|..
T Consensus       240 gskDnlVKlWDpr  252 (464)
T KOG0284|consen  240 GSKDNLVKLWDPR  252 (464)
T ss_pred             ccCCceeEeecCC
Confidence            6666666666654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.36  E-value=5.2  Score=36.45  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             ceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC--CC
Q 022967          164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KF  240 (289)
Q Consensus       164 ~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~--~~  240 (289)
                      .-.+.|||+ |.|+...               .+.-.||.+|.+++....+-.....-..=.|+|||++++++...  .-
T Consensus       242 ~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p  306 (425)
T COG0823         242 APAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP  306 (425)
T ss_pred             CccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCc
Confidence            447788885 5554322               23457999999877755533222222233689999988776442  34


Q ss_pred             eEEEEEecCCCC
Q 022967          241 RCLKYWLKGESK  252 (289)
Q Consensus       241 ~i~~~~~~~~~~  252 (289)
                      .|++++.++...
T Consensus       307 ~I~~~~~~g~~~  318 (425)
T COG0823         307 QIYLYDLEGSQV  318 (425)
T ss_pred             ceEEECCCCCce
Confidence            688888887543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.35  E-value=5.8  Score=35.70  Aligned_cols=198  Identities=13%  Similarity=0.204  Sum_probs=98.4

Q ss_pred             eEEEccCCCEEE-EecCCeEEEEe-cCCc-eEEeeeecCcCccCeEEcC-CCcEEEEeCCCceEEEe--CCC-eEEEEec
Q 022967           81 DVCVDRNGVLYT-ATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH  153 (289)
Q Consensus        81 ~l~~d~~g~l~v-~~~~g~i~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~~~i~~~~--~~g-~~~~~~~  153 (289)
                      ++++.+||+.++ +..+..|..|+ .+.+ ...+....+... +++|-. ..+||.+.....+-.++  +-. ++.+...
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            588889998774 44666677887 3443 334455556667 888853 23688887655544443  222 2221110


Q ss_pred             cCC----ccccCccceEEc-CCC--cEEEeeCCCcc---C---cccc-----ccccceecCCCEEEEEeCCCCeEE---E
Q 022967          154 VNG----SRINLADDLIAA-TDG--SIYFSVASTKF---G---LHNW-----GLDLLEAKPHGKLLKYDPSLNETS---I  212 (289)
Q Consensus       154 ~~~----~~~~~~~~l~~~-~dG--~lyv~~~~~~~---~---~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~---~  212 (289)
                      ..+    ..+..-..+++. .|.  ++|=....++.   +   ..+.     ...++.+..+|.|..++..+++..   .
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSR  365 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEee
Confidence            000    000011122222 122  12211111100   0   0000     012334445676766665443321   1


Q ss_pred             eeCC-------C---CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCC-EEEE
Q 022967          213 LLDS-------L---FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGS-FWIA  280 (289)
Q Consensus       213 ~~~~-------~---~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~-lwv~  280 (289)
                      .+.+       +   .+.++++.-+..+ |..+.++++.|..|.+... +.....+.. .+.++.+.|++..+|. +|+|
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            1111       1   2567888888666 8888777777766665432 222333221 3457888899888886 7777


Q ss_pred             E
Q 022967          281 I  281 (289)
Q Consensus       281 ~  281 (289)
                      +
T Consensus       444 i  444 (479)
T KOG0299|consen  444 I  444 (479)
T ss_pred             c
Confidence            5

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=93.31  E-value=1  Score=41.01  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             cCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeC
Q 022967          160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       160 ~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      ++.+.....+||+ |.++-..                .+-.||-+...+-.+..-. ........++++||.+.++-+ .
T Consensus       466 nyiRSckL~pdgrtLivGGea----------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsc-c  528 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEA----------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSC-C  528 (705)
T ss_pred             cceeeeEecCCCceEEecccc----------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeee-c
Confidence            4667778889996 4443211                1224555544333332211 112344678999999955444 5


Q ss_pred             CCCeEEEEEecCCCCcceeeeeccCCCCCCc---eeeCCCC-CEEEEEeC
Q 022967          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDG-SFWIAILQ  283 (289)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G-~lwv~~~~  283 (289)
                      ..+.|.+||+....      .+..+.+++||   |-+..|| +||.|..+
T Consensus       529 sdGnI~vwDLhnq~------~VrqfqGhtDGascIdis~dGtklWTGGlD  572 (705)
T KOG0639|consen  529 SDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISKDGTKLWTGGLD  572 (705)
T ss_pred             cCCcEEEEEcccce------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence            55789999987542      23344566666   6677778 79988543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.24  E-value=7  Score=36.26  Aligned_cols=156  Identities=13%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             CCCEEEEec-----CCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCcccc
Q 022967           87 NGVLYTATR-----DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRIN  160 (289)
Q Consensus        87 ~g~l~v~~~-----~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~  160 (289)
                      ...||+-..     ....+.+|.+|.+.............+..-++|+|++... ..+..+|-.| +... ...++....
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~-~~l~~~~~~  190 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWE-YDLPGGYYD  190 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEE-EE--TTEE-
T ss_pred             CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEe-eecCCcccc
Confidence            446664333     4567888888987654432222220255668999988775 7799999667 3222 122322112


Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---C----------------------
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---D----------------------  215 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~----------------------  215 (289)
                      .-.++...++|++.+.............    .......|+.+| .+|++....   +                      
T Consensus       191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~----~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~  265 (477)
T PF05935_consen  191 FHHDIDELPNGNLLILASETKYVDEDKD----VDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG  265 (477)
T ss_dssp             B-S-EEE-TTS-EEEEEEETTEE-TS-E----E---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred             cccccEECCCCCEEEEEeecccccCCCC----ccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence            3358889999986654431111000000    001123466666 334433210   0                      


Q ss_pred             ---CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          216 ---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       216 ---~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                         +..+.|++..++..+.|+++.+..+.|+++|..+
T Consensus       266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             CCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence               0134578888886777999999888999999544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.21  E-value=3.2  Score=39.51  Aligned_cols=92  Identities=20%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             EEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCCcE---EEEeCCCceEEEe-CCC-eEEEEec
Q 022967           82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEI---LVCDADKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        82 l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~l---~v~~~~~~i~~~~-~~g-~~~~~~~  153 (289)
                      +++++.|.+. ++..+|++.+|| ..+..+....+ ++... .+.|+++-+.   +....+..+..+| .++ .. +. .
T Consensus       111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc-l~-~  187 (775)
T KOG0319|consen  111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC-LH-T  187 (775)
T ss_pred             EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchH-HH-H
Confidence            7899987777 667899999999 44444433333 44445 8888876543   2223334455555 333 20 00 0


Q ss_pred             cCCccccCccceEEcCCCcEEEee
Q 022967          154 VNGSRINLADDLIAATDGSIYFSV  177 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~  177 (289)
                      .. .-.....+|++.+|+.-.++.
T Consensus       188 ~~-~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  188 MI-LHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             HH-hhhhheeeeeeccCCceEEEe
Confidence            00 012346688888888655554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.20  E-value=6.1  Score=36.49  Aligned_cols=131  Identities=12%  Similarity=0.109  Sum_probs=70.6

Q ss_pred             eEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC---CceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcE
Q 022967           98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSI  173 (289)
Q Consensus        98 ~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~---~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~l  173 (289)
                      .++.++.+|....+......|+..+.+.++|+=+.+-.+   ..+-.+|.++ .. + +-..+    --+.+.+.|.|+|
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~-df~eg----pRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F-DFPEG----PRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E-eCCCC----CccceEECCCCCE
Confidence            455665555444433332334338888888865444333   2355555445 21 1 11111    1257889999987


Q ss_pred             EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeCC-----CCeEEEEEe
Q 022967          174 YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETF-----KFRCLKYWL  247 (289)
Q Consensus       174 yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~-----~~~i~~~~~  247 (289)
                      .+-.+.   |           +-.|.|-.+|..+.  +.+. ....+..-..|+|||++++.+.+.     ++.+-+|+.
T Consensus       326 i~lAGF---G-----------NL~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  326 ILLAGF---G-----------NLPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EEEeec---C-----------CCCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            665442   1           22466666665532  1121 122344556899999998888764     344555665


Q ss_pred             cCC
Q 022967          248 KGE  250 (289)
Q Consensus       248 ~~~  250 (289)
                      .|.
T Consensus       390 tG~  392 (566)
T KOG2315|consen  390 TGS  392 (566)
T ss_pred             cCc
Confidence            664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=93.11  E-value=2.6  Score=38.40  Aligned_cols=86  Identities=10%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          197 HGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                      .|.|..+|..+.....-+  ....-..||+|+|.+..|+|+-....+|+.||........+-.+-..    -..+++.++
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~  261 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC  261 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence            356666676532221111  12233579999999998999988889999999875544333332211    134888888


Q ss_pred             CCEEEEEe-Cccc
Q 022967          275 GSFWIAIL-QVFI  286 (289)
Q Consensus       275 G~lwv~~~-~g~i  286 (289)
                      |.+.++.. .|.+
T Consensus       262 G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  262 GTYLCAGNSKGEL  274 (673)
T ss_pred             ceEEEeecCCceE
Confidence            87666654 4443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.07  E-value=0.59  Score=26.81  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=27.7

Q ss_pred             CCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       169 ~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      |+| +||+++..                 .+.|..+|+.+++......-...|.+++++
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            344 58998743                 467888998776654444445778888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=93.05  E-value=6.7  Score=35.52  Aligned_cols=138  Identities=13%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             ccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceec
Q 022967          119 LLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK  195 (289)
Q Consensus       119 ~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~  195 (289)
                      +|++++..+|.+.++....|..|+- .+|  +..+... .+    ....|....+|+..++.+                 
T Consensus       238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-kg----PI~slKWnk~G~yilS~~-----------------  295 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-KG----PIFSLKWNKKGTYILSGG-----------------  295 (524)
T ss_pred             cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-CC----ceEEEEEcCCCCEEEecc-----------------
Confidence            3489999999999887777776665 666  4444321 11    245788888887555532                 


Q ss_pred             CCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          196 PHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                      ..+.+..+|..+++......--..| -.+.|-.+.  -+++......|++|.+..+.-  ...|.. ..+....|..+..
T Consensus       296 vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P--~~t~~G-H~g~V~alk~n~t  370 (524)
T KOG0273|consen  296 VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP--VKTFIG-HHGEVNALKWNPT  370 (524)
T ss_pred             CCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc--ceeeec-ccCceEEEEECCC
Confidence            2467888888877766543322233 223443222  344445567788887765422  122332 2234455666666


Q ss_pred             CCEEEEEeC
Q 022967          275 GSFWIAILQ  283 (289)
Q Consensus       275 G~lwv~~~~  283 (289)
                      |.|..++.+
T Consensus       371 g~LLaS~Sd  379 (524)
T KOG0273|consen  371 GSLLASCSD  379 (524)
T ss_pred             CceEEEecC
Confidence            666555443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=92.99  E-value=4.9  Score=33.80  Aligned_cols=142  Identities=11%  Similarity=0.040  Sum_probs=76.5

Q ss_pred             cceEEEccC-CCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC-----c-eEEEe-C--C--
Q 022967           79 PEDVCVDRN-GVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK-----G-LLKVT-E--E--  145 (289)
Q Consensus        79 p~~l~~d~~-g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-----~-i~~~~-~--~--  145 (289)
                      -+++.+|.+ ..+..++.+..+..|| ++|+.....+...... .+.|+.+|++.++..++     + |..++ .  +  
T Consensus        55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~  133 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD  133 (327)
T ss_pred             EEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence            445666653 3455667777777887 6776554444333344 78888888765543221     1 33333 1  1  


Q ss_pred             --CeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcc
Q 022967          146 --GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN  221 (289)
Q Consensus       146 --g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~  221 (289)
                        +-+++.. +.-. -..+....+++-|...|+-.                 ..|.|-+||..+|...+-.  ......+
T Consensus       134 ~~s~ep~~k-I~t~-~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v~s~~~h~~~In  194 (327)
T KOG0643|consen  134 IDSEEPYLK-IPTP-DSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELVDSDEEHSSKIN  194 (327)
T ss_pred             hcccCceEE-ecCC-ccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceeeechhhhccccc
Confidence              1111111 0000 12345566777776555432                 3588999999876432221  2234567


Q ss_pred             eEEEecCCCEEEEEeCCCCe
Q 022967          222 GVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~  241 (289)
                      .|.+++|.. .+++.+....
T Consensus       195 d~q~s~d~T-~FiT~s~Dtt  213 (327)
T KOG0643|consen  195 DLQFSRDRT-YFITGSKDTT  213 (327)
T ss_pred             cccccCCcc-eEEecccCcc
Confidence            889999887 5565554333

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=92.91  E-value=5  Score=33.75  Aligned_cols=154  Identities=13%  Similarity=0.153  Sum_probs=91.8

Q ss_pred             cCCcceEEEccC-CCEEEEe-cCCeEEEEecC-C-ceEE---eeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC
Q 022967           76 LNGPEDVCVDRN-GVLYTAT-RDGWIKRLHKN-G-TWEN---WKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG  146 (289)
Q Consensus        76 ~~~p~~l~~d~~-g~l~v~~-~~g~i~~~~~~-g-~~~~---~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g  146 (289)
                      ..+-..+++.|. |+++.+. .+..|..++.. + .+..   +.....+..-.+|+.+.|++..+........+.  .++
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~   93 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG   93 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence            445677899886 8876554 55666666643 2 2221   112223322289999999966654444433333  345


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcce
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANG  222 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~g  222 (289)
                       ++.+.. ..|.. +....+++.++|++..+-..               ...-.|+..|.+ ++++..   .+...--..
T Consensus        94 efecv~~-lEGHE-nEVK~Vaws~sG~~LATCSR---------------DKSVWiWe~ded-dEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   94 EFECVAT-LEGHE-NEVKCVAWSASGNYLATCSR---------------DKSVWIWEIDED-DEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             ceeEEee-eeccc-cceeEEEEcCCCCEEEEeeC---------------CCeEEEEEecCC-CcEEEEeeeccccccccE
Confidence             665433 22221 35678999999987665432               122356666633 565543   233444567


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +.|+|... |+++.+..+.|..|+..
T Consensus       156 V~WHPt~d-lL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  156 VIWHPTED-LLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             EEEcCCcc-eeEEeccCCeEEEEeec
Confidence            88999777 88888888888877654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.86  E-value=4.9  Score=35.75  Aligned_cols=124  Identities=13%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEeCCCceEEEeCCC--eEEEEeccCCcc-ccCccceEEcC
Q 022967           95 RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSR-INLADDLIAAT  169 (289)
Q Consensus        95 ~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~-~~~~~~l~~~~  169 (289)
                      .++.|..|| ..+........++... .+....+| .|..+...+.+-.+|-.+  +..... ..+.. -.-.+.+.+.|
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence            555666666 3333332233334444 66666666 365565545566666222  332221 11111 11245678888


Q ss_pred             CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCC---CcceEEEecCCCEEEEEeC
Q 022967          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF---FANGVALSKDEDYLVVCET  237 (289)
Q Consensus       170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~---~p~gl~~~~d~~~l~v~~~  237 (289)
                      +|.. +..++                ..|.|+.++..+++.+.......   ....++|++.|..|.-++.
T Consensus       398 d~~Y-vaAGS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  398 DGSY-VAAGS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             CCce-eeecc----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            8864 44333                46889999999888887654322   2456789998887766654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.58  E-value=5.2  Score=38.38  Aligned_cols=148  Identities=14%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC---eEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG---VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g---~~~~  150 (289)
                      .--++.+.|||.+. ++.-++.+..|--|. ++-...-+...|...|-..+|+++.++.... .+-.+. +-|   ...+
T Consensus       510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f  589 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF  589 (888)
T ss_pred             cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence            34567788888877 666677666654222 2211111123354366666788888875433 232222 223   2222


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEeeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~p~gl~~~~d~  229 (289)
                      +.+      -+...+.+-|+-.++|+.+.                 .+.+-++|.+.-+ +..+.....-..-++++|+|
T Consensus       590 AHd------DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G  646 (888)
T KOG0306|consen  590 AHD------DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG  646 (888)
T ss_pred             ccc------CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCC
Confidence            211      13456788898888888654                 4677778765211 22222333345668899999


Q ss_pred             CEEEEEeCCCCeEEEEEecC
Q 022967          230 DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~  249 (289)
                      + ..|+.+..+.|..|....
T Consensus       647 ~-~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  647 S-FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             C-eEEeccCCceeEeeeccC
Confidence            8 566666667787776543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.57  E-value=0.79  Score=39.72  Aligned_cols=50  Identities=18%  Similarity=0.117  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .|-..+..++++.....+  +-.|+|--.-.+.|.|+.+..+.|..||+...
T Consensus       341 TikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             eEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEecccc
Confidence            455566666665443332  34667655545569999888999999998743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=92.54  E-value=5.7  Score=33.44  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=63.2

Q ss_pred             cCccCeEEcCC-CcEEEEeCCCc-eEEEeCC-C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccccc
Q 022967          117 DTLLGITTTQE-NEILVCDADKG-LLKVTEE-G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (289)
Q Consensus       117 ~p~~gl~~d~~-g~l~v~~~~~~-i~~~~~~-g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~  191 (289)
                      +.. .+++++. |.++.+-...+ |..++.. +  .... ....+.-.+..+.++..|.|+ |++..+            
T Consensus        16 r~W-~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck-~vld~~hkrsVRsvAwsp~g~-~La~aS------------   80 (312)
T KOG0645|consen   16 RVW-SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK-TVLDDGHKRSVRSVAWSPHGR-YLASAS------------   80 (312)
T ss_pred             cEE-EEEeccCCceEEEeecCCceEEEEecCCCCcEEEE-EeccccchheeeeeeecCCCc-EEEEee------------
Confidence            445 7888876 66655543443 4334422 3  2211 112333345788999999999 444443            


Q ss_pred             ceecCCCEEEEEeCCCCeEEEee--CC-CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          192 LEAKPHGKLLKYDPSLNETSILL--DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       192 ~~~~~~g~i~~~~~~~~~~~~~~--~~-~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                          ..+.+..+....++++.+.  ++ -.--..++|+++|++|- +.+....|+++.++
T Consensus        81 ----FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA-TCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   81 ----FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLA-TCSRDKSVWIWEID  135 (312)
T ss_pred             ----ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEE-EeeCCCeEEEEEec
Confidence                1233444433346666543  23 23346789999999544 44556778887766

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=92.41  E-value=5.8  Score=33.22  Aligned_cols=23  Identities=13%  Similarity=0.356  Sum_probs=19.2

Q ss_pred             CeEEc-CCCcEEEEeCCCceEEEe
Q 022967          121 GITTT-QENEILVCDADKGLLKVT  143 (289)
Q Consensus       121 gl~~d-~~g~l~v~~~~~~i~~~~  143 (289)
                      |+..| ..|.|||+...-.||++.
T Consensus       209 G~VaDdEtG~LYIaeEdvaiWK~~  232 (364)
T COG4247         209 GMVADDETGFLYIAEEDVAIWKYE  232 (364)
T ss_pred             ceeeccccceEEEeeccceeeecc
Confidence            77766 568999999878899998

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.32  E-value=1.6  Score=39.68  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             EEecCCeEEEEecCCceEEe--eeecCcCccCeEEcCCCc-EEEEeC-CCceEEEe-CCC--eEEEEeccCCccccCccc
Q 022967           92 TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEG--VTVLASHVNGSRINLADD  164 (289)
Q Consensus        92 v~~~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~~g~-l~v~~~-~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~  164 (289)
                      ++..+|.|..||..|....+  ......|..||.|.+... |+|+-. +..|+.+| ...  ...++...      -...
T Consensus       182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~------Plst  255 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH------PLST  255 (673)
T ss_pred             eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC------Ccce
Confidence            44466777788766654333  222345555999987664 555542 25788888 322  44443321      2357


Q ss_pred             eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                      +++.++|.+.++..+                 .|+|+.||...
T Consensus       256 vaf~~~G~~L~aG~s-----------------~G~~i~YD~R~  281 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNS-----------------KGELIAYDMRS  281 (673)
T ss_pred             eeecCCceEEEeecC-----------------CceEEEEeccc
Confidence            899999976665433                 58899999764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=92.26  E-value=2.6  Score=37.83  Aligned_cols=148  Identities=13%  Similarity=0.075  Sum_probs=80.1

Q ss_pred             cceEEEcc-CC-CEE-EEecCCeEEEEecCCc------eEEeeeecCcCccCeEEcCCC--cEEEEeCCCceEEE-e-CC
Q 022967           79 PEDVCVDR-NG-VLY-TATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKV-T-EE  145 (289)
Q Consensus        79 p~~l~~d~-~g-~l~-v~~~~g~i~~~~~~g~------~~~~~~~~~~p~~gl~~d~~g--~l~v~~~~~~i~~~-~-~~  145 (289)
                      -.++++.| .. .+. +|+..|.|-.|+-+++      +..+. ..+.|+++|.|.+.+  .+|-+.. .|..|+ | ..
T Consensus       189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSy-DGtiR~~D~~~  266 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSY-DGTIRLQDFEG  266 (498)
T ss_pred             eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeecc-Cceeeeeeecc
Confidence            45577777 22 454 7777788888874221      11222 223344489888654  4666654 554444 4 44


Q ss_pred             C-eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEe--CCCCeEEEeeCCCCCcc
Q 022967          146 G-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD--PSLNETSILLDSLFFAN  221 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~~~~~~~~~~~p~  221 (289)
                      + .+.+.....  ......++.+.. ++.+++.+.-                  |.+-.+|  .++.+.+.+.-.-....
T Consensus       267 ~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  267 NISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             hhhHHHhhcCc--cceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhcccc
Confidence            4 433322110  111233455554 4567776542                  3222333  33333333222223568


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +++++|...+++.+....+...+||+.
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehh
Confidence            899999998888888877778788864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.26  E-value=11  Score=37.17  Aligned_cols=126  Identities=11%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEEecCC--ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEe
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS  152 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~  152 (289)
                      .....++.++|..++.++. .++.|.+||.+.  .+..+.....+-. -++.++..+||.+.++.|+..+-        -
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk--------l  320 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK--------L  320 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE--------E
Confidence            4556677888866776555 566777777332  3444433334444 56777777777776655544332        1


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---CC---CCCcceEEEe
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DS---LFFANGVALS  226 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~---~~~p~gl~~~  226 (289)
                      .      +..-..++..++-+|+-+                    -.|..+|-.+.+-..+.   ..   ...|..+.++
T Consensus       321 e------RErpa~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYN  374 (1202)
T KOG0292|consen  321 E------RERPAYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYN  374 (1202)
T ss_pred             c------ccCceEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcccCCcceeeec
Confidence            0      011133455455566653                    24666665542222221   11   2335678888


Q ss_pred             cCCCEEEEEe
Q 022967          227 KDEDYLVVCE  236 (289)
Q Consensus       227 ~d~~~l~v~~  236 (289)
                      |..+.+.++.
T Consensus       375 pae~~vlics  384 (1202)
T KOG0292|consen  375 PAENAVLICS  384 (1202)
T ss_pred             cccCeEEEEe
Confidence            8777677763

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.94  E-value=7.7  Score=33.58  Aligned_cols=121  Identities=12%  Similarity=0.159  Sum_probs=63.8

Q ss_pred             CeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccCC-------ccccCccceEEc----CCCcEEEeeCCCccCccc
Q 022967          121 GITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNG-------SRINLADDLIAA----TDGSIYFSVASTKFGLHN  186 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~-------~~~~~~~~l~~~----~dG~lyv~~~~~~~~~~~  186 (289)
                      ++..+.+|+++|+.+. ..|+.++ .+| +........+       ..+..-.+..+-    .++.|-+-|.... .   
T Consensus       148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~-~---  223 (299)
T PF14269_consen  148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANS-D---  223 (299)
T ss_pred             eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCC-C---
Confidence            7777788999888765 5699999 778 5443322101       112222233333    4556555554200 0   


Q ss_pred             cccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce--------EEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG--------VALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       187 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g--------l~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                         ........+.++.+|+.+.+.+.+..-...+.+        +..-|+|+ ++|+.....++..|+.+|
T Consensus       224 ---~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  224 ---FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             ---CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence               011223457888899886655544321112222        23344555 666666666666666554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.79  E-value=9.6  Score=34.38  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCC
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~  238 (289)
                      ..+++++-+.-.|+.+...               .+.-++|.+...-..+..+.  .-..+.|+|+|+.+|++++++-..
T Consensus       382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            4567777776666665332               12336677754322343332  224467899999999999998777


Q ss_pred             CCeEEEEEec
Q 022967          239 KFRCLKYWLK  248 (289)
Q Consensus       239 ~~~i~~~~~~  248 (289)
                      .+++-||+..
T Consensus       447 EhRlGRW~~~  456 (479)
T KOG0299|consen  447 EHRLGRWWCL  456 (479)
T ss_pred             ccccceeeEe
Confidence            7889888764

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=91.69  E-value=0.26  Score=24.97  Aligned_cols=18  Identities=17%  Similarity=0.399  Sum_probs=14.8

Q ss_pred             cCccceEEcCCCcEEEee
Q 022967          160 NLADDLIAATDGSIYFSV  177 (289)
Q Consensus       160 ~~~~~l~~~~dG~lyv~~  177 (289)
                      +...+|..|++|+|||++
T Consensus         5 n~I~~i~~D~~G~lWigT   22 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGT   22 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEE
T ss_pred             CeEEEEEEcCCcCEEEEe
Confidence            467799999999999986

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=91.65  E-value=9  Score=33.78  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             cCCcceEEEccCCCEEE-EecCCeEEEEe-cCC---ceEEe--------------------e--eecCcCccCeEEcCCC
Q 022967           76 LNGPEDVCVDRNGVLYT-ATRDGWIKRLH-KNG---TWENW--------------------K--LIGGDTLLGITTTQEN  128 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v-~~~~g~i~~~~-~~g---~~~~~--------------------~--~~~~~p~~gl~~d~~g  128 (289)
                      -...+++.++++|..++ ++.+..|-.++ ...   ..+..                    .  .+...|+..+.+.+.+
T Consensus       193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~  272 (423)
T KOG0313|consen  193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT  272 (423)
T ss_pred             ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC
Confidence            34567889999998884 45677666665 110   00000                    0  0011233367777767


Q ss_pred             cEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967          129 EILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       129 ~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                      .+|-+..++.|.++| ..|  +..+...      ...+.+...+.-+|.++..+                 ..-+..+||
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DP  329 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDP  329 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeecCC
Confidence            788777778888888 544  4433221      24567777787777776543                 123556788


Q ss_pred             CCCeEEE----eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          206 SLNETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       206 ~~~~~~~----~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +++.-..    +...-.+-.++.++|...+++++-+..+.+..+|....
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            7654322    23344567889999999999999999999999987643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.51  E-value=9.1  Score=33.57  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=60.7

Q ss_pred             CCCEEEEecCCeEEEEecCCceEEeee-----------ecCcCc--cCeEEc-CCCcEEEEeCC----------CceEEE
Q 022967           87 NGVLYTATRDGWIKRLHKNGTWENWKL-----------IGGDTL--LGITTT-QENEILVCDAD----------KGLLKV  142 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~~~g~~~~~~~-----------~~~~p~--~gl~~d-~~g~l~v~~~~----------~~i~~~  142 (289)
                      ++.+|+-+.+|.|+.++-.|....+..           ..-+|-  --++++ ..++|||.-+.          ..||.+
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            556777888999999884443222211           011222  036776 46689987321          138888


Q ss_pred             e-CCC--eEEEEeccCCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC
Q 022967          143 T-EEG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (289)
Q Consensus       143 ~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  217 (289)
                      | +++  +..+...      +...+|.+..|.  .||..+..                 .+.|+.+|+.+|+.....+.+
T Consensus       275 D~~t~krv~Ri~l~------~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  275 DLKTHKRVARIPLE------HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             ETTTTEEEEEEEEE------EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE---
T ss_pred             ECCCCeEEEEEeCC------CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhcc
Confidence            8 666  4444321      124478888765  46655432                 467999999988766555554


Q ss_pred             CC
Q 022967          218 FF  219 (289)
Q Consensus       218 ~~  219 (289)
                      ..
T Consensus       332 G~  333 (342)
T PF06433_consen  332 GE  333 (342)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.44  E-value=9.9  Score=35.26  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=54.7

Q ss_pred             EEEccCCCEEEEecCCeEEEEecCCceEEeeeecC----cCccCeEEcCCCcEEEEeC--------------CCceEEEe
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG----DTLLGITTTQENEILVCDA--------------DKGLLKVT  143 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~l~v~~~--------------~~~i~~~~  143 (289)
                      +...++|++++... .++..+|..|+........+    .-+ .+...++|++++...              ...|+.+|
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            44555677765544 56777777776443322222    135 888889998666433              23578888


Q ss_pred             CCC-eEEEEe--c-cC--------------------CccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCC
Q 022967          144 EEG-VTVLAS--H-VN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (289)
Q Consensus       144 ~~g-~~~~~~--~-~~--------------------~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g  198 (289)
                      .+| +.....  . ..                    .....+.+++..++ ++.|.++.-.                 ..
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence            777 332211  1 10                    01113567888888 7788887532                 24


Q ss_pred             EEEEEeCCCCeEEE
Q 022967          199 KLLKYDPSLNETSI  212 (289)
Q Consensus       199 ~i~~~~~~~~~~~~  212 (289)
                      .|+++|.+++++.-
T Consensus       294 ~V~~Id~~t~~i~W  307 (477)
T PF05935_consen  294 AVIKIDYRTGKIKW  307 (477)
T ss_dssp             EEEEEE-TTS-EEE
T ss_pred             EEEEEECCCCcEEE
Confidence            68888866666553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.21  E-value=3  Score=36.43  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=32.7

Q ss_pred             CCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          197 HGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      .+.|+.||...+... .+.- -..+|+|+|+| ....+++....+.+|-||.
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             CCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhh
Confidence            456888887655432 2222 23579999999 5557777677788888875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.17  E-value=8.9  Score=36.46  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             CCCEE-EEecC------CeEEEEec-CCceEEeeeecC-c-CccCeEEcCCCcEEEEeCCC------ceEEEeCC-C-eE
Q 022967           87 NGVLY-TATRD------GWIKRLHK-NGTWENWKLIGG-D-TLLGITTTQENEILVCDADK------GLLKVTEE-G-VT  148 (289)
Q Consensus        87 ~g~l~-v~~~~------g~i~~~~~-~g~~~~~~~~~~-~-p~~gl~~d~~g~l~v~~~~~------~i~~~~~~-g-~~  148 (289)
                      +|.|| +|-.+      ..+.+||+ ..++.....-.. + -. |++. -+|.||+.....      .+-++|+. . .+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCccc
Confidence            67888 44444      34677773 334544332111 1 23 5555 368899875322      35666632 2 44


Q ss_pred             EEEeccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEE
Q 022967          149 VLASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVAL  225 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~  225 (289)
                      ....-..     .-.+..+. -+|.||+.-+...           ..+.-..+.+|||.+++++..+.-  -+.-.|++.
T Consensus       410 ~va~m~~-----~r~~~gv~~~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~  473 (571)
T KOG4441|consen  410 PVAPMLT-----RRSGHGVAVLGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV  473 (571)
T ss_pred             ccCCCCc-----ceeeeEEEEECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEE
Confidence            3322111     11223333 3889999865310           000235789999999988776432  223344444


Q ss_pred             ecCCCEEEEEeCC-----CCeEEEEEecCC
Q 022967          226 SKDEDYLVVCETF-----KFRCLKYWLKGE  250 (289)
Q Consensus       226 ~~d~~~l~v~~~~-----~~~i~~~~~~~~  250 (289)
                      -  ++.||+.-..     ...+.+||+..+
T Consensus       474 ~--~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  474 L--NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             E--CCEEEEECCccCCCccceEEEEcCCCC
Confidence            3  4458887442     234788887654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=90.48  E-value=16  Score=35.28  Aligned_cols=100  Identities=10%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC----CCCcceEEEecCCCEEEEEe
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~----~~~p~gl~~~~d~~~l~v~~  236 (289)
                      ..++|+++|.-.+.++...                 .-.|-.|+.+.++......+    ...+.-+.++|.|-  |++.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~at  658 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YLAT  658 (1080)
T ss_pred             eEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EEEE
Confidence            3567888887655554321                 12355566655544333222    23456677888875  4443


Q ss_pred             C-CCCeEEEEEecCCC-C---cceeeeeccCCCCCCc---eeeCCCCCEEE
Q 022967          237 T-FKFRCLKYWLKGES-K---EQTEIFVENLPGGPDN---IKLAPDGSFWI  279 (289)
Q Consensus       237 ~-~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~p~~---i~~d~~G~lwv  279 (289)
                      + .+..|-.||..... .   ......+.++...+|+   |.+..||-|+|
T Consensus       659 Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  659 SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFV  709 (1080)
T ss_pred             eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEE
Confidence            3 34778888875331 1   1111112222223444   66778887665

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.43  E-value=6.6  Score=34.44  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=78.5

Q ss_pred             cCCcceEEEccCC--CEEEEecCCeEEEEecCC--ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEE
Q 022967           76 LNGPEDVCVDRNG--VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTV  149 (289)
Q Consensus        76 ~~~p~~l~~d~~g--~l~v~~~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~  149 (289)
                      -.+-.++|-+|+.  .+..+..+|.|..|+...  ....+....|... ||.++....+++++. ..+-.+--+|  ...
T Consensus        66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdD-KtvK~wk~~~~p~~t  143 (433)
T KOG0268|consen   66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDD-KTVKQWKIDGPPLHT  143 (433)
T ss_pred             ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCC-cceeeeeccCCccee
Confidence            3455666777643  345677889999998433  2333444445666 999987444555553 4333332223  222


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +..+      ....||.-...+.++.+-+                   ..|-.+|... .-+..+..+......+.++|-
T Consensus       144 ilg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpv  198 (433)
T KOG0268|consen  144 ILGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPV  198 (433)
T ss_pred             eecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecCCC
Confidence            2211      1122333222333444321                   1233444321 123334445555566788887


Q ss_pred             CCEEEEEeCCCCeEEEEEecCC
Q 022967          229 EDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ...++.+....+.|+.||.-..
T Consensus       199 ETsILas~~sDrsIvLyD~R~~  220 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQA  220 (433)
T ss_pred             cchheeeeccCCceEEEecccC
Confidence            7667777667788999997543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.40  E-value=1.3  Score=40.02  Aligned_cols=63  Identities=21%  Similarity=0.420  Sum_probs=34.6

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeec--------------cCCCCCCceeeCCCC-CEEEEEe
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ--TEIFVE--------------NLPGGPDNIKLAPDG-SFWIAIL  282 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~--------------~~~~~p~~i~~d~~G-~lwv~~~  282 (289)
                      +.-|.+|.|.++|||++...+.|++||+.++.--+  -++++.              .+.+.|.-+.+..|| ++||++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            46678999999999999999999999998642211  122221              233567778888888 7888864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=90.16  E-value=9.2  Score=31.33  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=46.5

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      ....+++||.|+|.++...                 ......||..+++.. .+.........+.|+|...+|. +.+..
T Consensus       233 avaav~vdpsgrll~sg~~-----------------dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yll-t~syd  294 (350)
T KOG0641|consen  233 AVAAVAVDPSGRLLASGHA-----------------DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYD  294 (350)
T ss_pred             eeEEEEECCCcceeeeccC-----------------CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE-Eeccc
Confidence            4568899999999987432                 234555666655532 3333334445678888666444 44667


Q ss_pred             CeEEEEEecCC
Q 022967          240 FRCLKYWLKGE  250 (289)
Q Consensus       240 ~~i~~~~~~~~  250 (289)
                      ..|..-|+.|+
T Consensus       295 ~~ikltdlqgd  305 (350)
T KOG0641|consen  295 MKIKLTDLQGD  305 (350)
T ss_pred             ceEEEeecccc
Confidence            88888888876

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=90.15  E-value=0.29  Score=27.98  Aligned_cols=21  Identities=10%  Similarity=0.146  Sum_probs=17.4

Q ss_pred             CCCceeeCCCCCEEEEEeCcc
Q 022967          265 GPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       265 ~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .+.+|++|.+|++||+....+
T Consensus        14 ~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eEEEEEECCCCCEEEEEeecC
Confidence            478899999999999976543

SBBP stands for Seven Bladed Beta Propeller.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=90.02  E-value=17  Score=34.17  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeCcc
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQVF  285 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~g~  285 (289)
                      ..+..+.|+|-.-+|+|+.  .+-|.+||+....+.+  .+..+ ....+.+++...| +|.++.....
T Consensus       567 G~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvK--kL~tg-~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVK--KLLTG-SKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             CceeEEEecCCCceEEEEe--ccceEEEehhHHHHHH--HHhcC-CeeeeeeeecCCCCeEEEecCCCe
Confidence            4567788999888899984  4678888875321111  11111 1234556776666 6777665543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=12  Score=32.23  Aligned_cols=179  Identities=18%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEEee---eecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC---eEEEEe
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g---~~~~~~  152 (289)
                      +.+++. .+.-|++..++++..+| .+-...++.   ..++... ++.. .+++.|+++...+++..+.++   ..++-.
T Consensus       175 ~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~-sv~v-sdnr~y~vvy~egvlivd~s~~ssp~~~gs  251 (370)
T COG5276         175 HDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTY-SVSV-SDNRAYLVVYDEGVLIVDVSGPSSPTVFGS  251 (370)
T ss_pred             eeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceE-EEEe-cCCeeEEEEcccceEEEecCCCCCceEeec
Confidence            456664 44677888888888888 222222221   2222334 4545 466899998878899988555   233321


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeE-E-EeeCCCCCcceEEEecC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET-S-ILLDSLFFANGVALSKD  228 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~-~-~~~~~~~~p~gl~~~~d  228 (289)
                       ..........++.+ ++...|+.+..  +                ++-.+|..  ++-+ . .+........|+..+  
T Consensus       252 -yet~~p~~~s~v~V-s~~~~Yvadga--~----------------gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--  309 (370)
T COG5276         252 -YETSNPVSISTVPV-SGEYAYVADGA--K----------------GLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--  309 (370)
T ss_pred             -cccCCcccccceec-ccceeeeeccc--c----------------CceeEeccCCCCCchhccccCCCccccceEEe--
Confidence             11111111122333 45578998865  1                12223322  1111 1 111223345666654  


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      +.++|+++..  .....+...++.... ++.....+....+.++-+ .+|...+++|++
T Consensus       310 ~~y~yiadkn--~g~vV~~s~~s~m~~-~~g~~ti~~s~~v~~~~q-~~y~~d~~~gl~  364 (370)
T COG5276         310 GNYNYIADKN--TGAVVDASPPSMMDK-RPGRPTIGQSCDVSVDTQ-IIYSTDYNGGLS  364 (370)
T ss_pred             cCeeEeccCC--ceEEEeCCChhhccc-ccCcceEeeecceEEEee-EEEEeecCCCEE
Confidence            6779999765  333344443322111 111011122334667766 788888887764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.78  E-value=22  Score=35.12  Aligned_cols=121  Identities=10%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEE-eee--------ec-CcC------ccCeEEcCCCcEEEEeC----------CCce
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWEN-WKL--------IG-GDT------LLGITTTQENEILVCDA----------DKGL  139 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~-~~~--------~~-~~p------~~gl~~d~~g~l~v~~~----------~~~i  139 (289)
                      +++||+++.+++++.+| .+|+... +..        .. ..+      .+.-.+ .++.+++...          ...|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence            45889988999999999 5776542 110        00 001      101122 2567777632          1236


Q ss_pred             EEEe-CCC-eEEEEecc---------CCccc--cCc---cceEEcCC-CcEEEeeCCCccCccccc---cccceecCCCE
Q 022967          140 LKVT-EEG-VTVLASHV---------NGSRI--NLA---DDLIAATD-GSIYFSVASTKFGLHNWG---LDLLEAKPHGK  199 (289)
Q Consensus       140 ~~~~-~~g-~~~~~~~~---------~~~~~--~~~---~~l~~~~d-G~lyv~~~~~~~~~~~~~---~~~~~~~~~g~  199 (289)
                      ..+| .+| ...-....         .+...  ..+   ..++.|++ |.+|+..+...   .++.   +........+.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~---pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT---PDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc---ccccCCccccCcccccce
Confidence            7788 777 43222110         01000  111   35678875 67888654311   1110   11111233578


Q ss_pred             EEEEeCCCCeEE
Q 022967          200 LLKYDPSLNETS  211 (289)
Q Consensus       200 i~~~~~~~~~~~  211 (289)
                      |+.+|+++|+..
T Consensus       416 lvALD~~TGk~~  427 (764)
T TIGR03074       416 LVALDATTGKER  427 (764)
T ss_pred             EEEEeCCCCceE
Confidence            999999998865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=89.69  E-value=3.9  Score=36.29  Aligned_cols=149  Identities=13%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEE-e-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~-~-~~g--~~~  149 (289)
                      +.-+++++.++...|++. .+|.|..++ ...+-+ .+...+-.+. .+.+++...|.++.....++++ | .+|  +..
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWDprSg~cl~t  259 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT  259 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence            345678888877777555 678888887 333322 2223333456 8888876656555433335554 4 455  332


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      +...     .+...++.+.++|+...+.+.                 ...+-.||..+ +++..+...-.....++|+|-
T Consensus       260 lh~H-----KntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  260 LHGH-----KNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL  317 (464)
T ss_pred             hhhc-----cceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence            2111     134568889999976666432                 22344555431 122222222334456778887


Q ss_pred             CCEEEEEeCCCCeEEEEEec
Q 022967          229 EDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ..-|+.+-...+.|..+.+.
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             cccceeeccCCCceEEEecc
Confidence            66677777677777777665

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=89.40  E-value=18  Score=36.46  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=94.4

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCCC--ceEEEeCCC--
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADK--GLLKVTEEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~~--~i~~~~~~g--  146 (289)
                      .-.|+++++|- .+++|-++ ....+.+.+.+|....+  ......|- .+++++ .|.+|.++.+.  .+.+...+|  
T Consensus       479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~  557 (877)
T KOG1215|consen  479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERASLDGSE  557 (877)
T ss_pred             ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhcCCCCC
Confidence            67899999998 77888554 55666666656653322  22225677 888886 45688887653  344444566  


Q ss_pred             eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~  224 (289)
                      ...+...    ....+++++.|- +..+|+.+...                ...+..++.++...+ ........|.+++
T Consensus       558 ~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~----------------~~~i~~~~~~g~~r~~~~~~~~~~p~~~~  617 (877)
T KOG1215|consen  558 RAVLVTN----GILWPNGLTIDYETDRLYWADAKL----------------DYTIESANMDGQNRRVVDSEDLPHPFGLS  617 (877)
T ss_pred             ceEEEeC----CccCCCcceEEeecceeEEEcccC----------------CcceeeeecCCCceEEeccccCCCceEEE
Confidence            4444332    145789999996 66899998652                124566666544443 3345567777777


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEe
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      ..  ..++|+++...+.+.+...
T Consensus       618 ~~--~~~iyw~d~~~~~~~~~~~  638 (877)
T KOG1215|consen  618 VF--EDYIYWTDWSNRAISRAEK  638 (877)
T ss_pred             Ee--cceeEEeeccccceEeeec
Confidence            65  3458999887665555543

>PHA02713 hypothetical protein; Provisional

Probab=89.31  E-value=20  Score=34.00  Aligned_cols=156  Identities=12%  Similarity=0.071  Sum_probs=73.8

Q ss_pred             CCCEEE-EecC------CeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC------CceEEEe-CCC-eEE
Q 022967           87 NGVLYT-ATRD------GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-VTV  149 (289)
Q Consensus        87 ~g~l~v-~~~~------g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g-~~~  149 (289)
                      ++.||+ |..+      ..++++++ ...+.....-. .+...+++. -+|.||+....      ..+.++| ... .+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            678995 3321      34778884 34444332211 111113333 36789987532      1266777 344 443


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCcc---ccccc---cceecCCCEEEEEeCCCCeEEEeeCC--CCCcc
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH---NWGLD---LLEAKPHGKLLKYDPSLNETSILLDS--LFFAN  221 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~---~~~~~---~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~  221 (289)
                      +.. .+...  .-.++ +.-+|.||+.-+.......   .....   .........+.+|||++++++.+..-  .+...
T Consensus       382 ~~~-mp~~r--~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~  457 (557)
T PHA02713        382 LPD-MPIAL--SSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP  457 (557)
T ss_pred             CCC-CCccc--ccccE-EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence            322 11111  11122 2347899997543110000   00000   00001135699999999888766432  12223


Q ss_pred             eEEEecCCCEEEEEeCCC------CeEEEEEecC
Q 022967          222 GVALSKDEDYLVVCETFK------FRCLKYWLKG  249 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~------~~i~~~~~~~  249 (289)
                      +++.- ++ .+|+....+      ..+.+||+..
T Consensus       458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence            34332 34 488874321      3467898775

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=89.21  E-value=1.2  Score=25.41  Aligned_cols=33  Identities=30%  Similarity=0.357  Sum_probs=24.7

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT  107 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~  107 (289)
                      .+..|.++++|+ ++.||.++ ..+.|.+.+-+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            478899999999 56788544 6678888875553

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=89.12  E-value=15  Score=32.30  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=55.7

Q ss_pred             CCcCCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCC-cEEEEeCCCceEEEe-CCC--
Q 022967           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--  146 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~~g--  146 (289)
                      +-+..-+++++||.+..+ .+..++.|-.+| ..|++.....+ -.... |+++.+.- .||-+..+..+-.+| ...  
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhhhh
Confidence            335567889999976666 445777788888 67776543332 22345 88886543 244344334466666 322  


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~  178 (289)
                      ++.+..     -+...+.+...|--.+.++.+
T Consensus       228 IR~YhG-----HlS~V~~L~lhPTldvl~t~g  254 (460)
T KOG0285|consen  228 IRHYHG-----HLSGVYCLDLHPTLDVLVTGG  254 (460)
T ss_pred             HHHhcc-----ccceeEEEeccccceeEEecC
Confidence            333222     123456677766555556543

>PHA02713 hypothetical protein; Provisional

Probab=89.06  E-value=9.6  Score=36.12  Aligned_cols=70  Identities=11%  Similarity=0.152  Sum_probs=38.4

Q ss_pred             cCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEeeCC--CCCcceEEEecCCCEEEEEeCCCC--eE
Q 022967          168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDS--LFFANGVALSKDEDYLVVCETFKF--RC  242 (289)
Q Consensus       168 ~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~--~~~p~gl~~~~d~~~l~v~~~~~~--~i  242 (289)
                      .-+|.||+.-+...           .......+.+|||++ ++++.+..-  -+.-.|++.. ++ .||+.-....  .+
T Consensus       461 ~~~~~IYv~GG~~~-----------~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~  527 (557)
T PHA02713        461 SHKDDIYVVCDIKD-----------EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DN-TIMMLHCYESYMLQ  527 (557)
T ss_pred             EECCEEEEEeCCCC-----------CCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CC-EEEEEeeecceeeh
Confidence            34689999754210           000113578999998 678766421  1122344433 44 4888743222  57


Q ss_pred             EEEEecCC
Q 022967          243 LKYWLKGE  250 (289)
Q Consensus       243 ~~~~~~~~  250 (289)
                      .+||+..+
T Consensus       528 e~yd~~~~  535 (557)
T PHA02713        528 DTFNVYTY  535 (557)
T ss_pred             hhcCcccc
Confidence            77877654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.00  E-value=12  Score=31.02  Aligned_cols=172  Identities=10%  Similarity=0.102  Sum_probs=91.4

Q ss_pred             cceEEEccCCCEEEEecCCe-EEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--eEEEE
Q 022967           79 PEDVCVDRNGVLYTATRDGW-IKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~-i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~~~~~  151 (289)
                      -..+-++-+|+..++....+ |..|+ ..|... ++...+.... .++...|+.-+.+- ....+..+| ..|  .+.+-
T Consensus        20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r   98 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR   98 (307)
T ss_pred             eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecc
Confidence            34556677888887775544 44555 456543 3333334455 56655554433332 224577788 777  44432


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe---eCCCCCcceEEEecC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD  228 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~---~~~~~~p~gl~~~~d  228 (289)
                      ..     ....+.+.+..+..+.++...                 ...+-.+|-.....+.+   .+.......+.+.  
T Consensus        99 gH-----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--  154 (307)
T KOG0316|consen   99 GH-----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--  154 (307)
T ss_pred             cc-----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEec--
Confidence            21     125678888888888776432                 12344444333333322   2222223333332  


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                       ++.+++.+..++++.||+.-..+.     .+....-...+.+..||+.-++.
T Consensus       155 -~heIvaGS~DGtvRtydiR~G~l~-----sDy~g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  155 -EHEIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             -ccEEEeeccCCcEEEEEeecceee-----hhhcCCcceeEEecCCCCEEEEe
Confidence             347888788899999998532221     11111123457777777654443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=88.92  E-value=13  Score=31.28  Aligned_cols=176  Identities=13%  Similarity=0.118  Sum_probs=92.8

Q ss_pred             cCCcceEEEccCCC-EEEEecCCeEEEEecCC-ceEE-ee--eecCcCccCeEEcCCC-cEEEEe-CCCceEEEe-CCC-
Q 022967           76 LNGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWEN-WK--LIGGDTLLGITTTQEN-EILVCD-ADKGLLKVT-EEG-  146 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g-~~~~-~~--~~~~~p~~gl~~d~~g-~l~v~~-~~~~i~~~~-~~g-  146 (289)
                      ...-.+++...+|. |..+..++.+..++.++ ++.+ +.  ...+... .+.+++.. .++++. .+..+.++| ..+ 
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~~k   98 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRSGK   98 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEeccCc
Confidence            45567788888776 44666777777776332 2111 11  1112233 56677533 455544 445577777 445 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~  224 (289)
                       ...+..  .+    ...-+...|+|. +-+++                  ....|-.+|..+-+...-..-....+.++
T Consensus        99 ~~~~i~~--~~----eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   99 CTARIET--KG----ENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             EEEEeec--cC----cceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeee
Confidence             333222  11    123567778775 44433                  23467777765333322222234567889


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                      |+-+++ +++..++.+.|.++...  .+..... +...+...-+|.+|++|+++..
T Consensus       155 w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~s-i~AH~snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  155 WNNSND-LFFLTNGLGCVEILSYP--SLKPVQS-IKAHPSNCICIEFDPDGRYFAT  206 (313)
T ss_pred             ecCCCC-EEEEecCCceEEEEecc--ccccccc-cccCCcceEEEEECCCCceEee
Confidence            987777 77776787888776433  2221111 1111122334889999976543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.50  E-value=21  Score=33.19  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             EEEecCCeEEEEe-cCCceEEeeeecCcC--ccCeEEc-CCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccc
Q 022967           91 YTATRDGWIKRLH-KNGTWENWKLIGGDT--LLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (289)
Q Consensus        91 ~v~~~~g~i~~~~-~~g~~~~~~~~~~~p--~~gl~~d-~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~  164 (289)
                      ..++..|.|+.++ ..|+++......+.+  .+.+... .-|-||-++....+..++ +++ +..+....    ...+..
T Consensus        74 vlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~~~s  149 (541)
T KOG4547|consen   74 VLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPLVSS  149 (541)
T ss_pred             EeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC----CCccce
Confidence            3566778888887 556666554433322  2022221 223466555545566666 455 22222211    135678


Q ss_pred             eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC-----CCEEEEEeCC
Q 022967          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD-----EDYLVVCETF  238 (289)
Q Consensus       165 l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d-----~~~l~v~~~~  238 (289)
                      +++.|||.+..+..                   ..|..+|.+++++.....+...| +.++|..+     |+++.-++..
T Consensus       150 l~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  150 LCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             EEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence            99999998877642                   46888888888877666665555 34455443     5554444433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=88.27  E-value=17  Score=31.94  Aligned_cols=81  Identities=14%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             cCCeEEEEec-CCc-eEEeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEE-e-CCC--eEEEEeccCCccccCccceEE
Q 022967           95 RDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKG-LLKV-T-EEG--VTVLASHVNGSRINLADDLIA  167 (289)
Q Consensus        95 ~~g~i~~~~~-~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~-~-~~g--~~~~~~~~~~~~~~~~~~l~~  167 (289)
                      ..|.|+.+|. +=+ ...+.. ...+++.|+|+++|.+..+...+| |.|+ . ++|  +..+-..   ........|++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG---~~~~~IySL~F  226 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG---TYPVSIYSLSF  226 (391)
T ss_pred             CCceEEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC---ceeeEEEEEEE
Confidence            4578888883 222 223332 233443899999999888766654 5554 4 777  4444322   22235678999


Q ss_pred             cCCCcEEEeeCC
Q 022967          168 ATDGSIYFSVAS  179 (289)
Q Consensus       168 ~~dG~lyv~~~~  179 (289)
                      ++|+.+..+.+.
T Consensus       227 s~ds~~L~~sS~  238 (391)
T KOG2110|consen  227 SPDSQFLAASSN  238 (391)
T ss_pred             CCCCCeEEEecC
Confidence            999986655443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=87.83  E-value=17  Score=31.46  Aligned_cols=151  Identities=13%  Similarity=0.100  Sum_probs=73.3

Q ss_pred             CcceEEEccCCCEEEE-ecCCeEEEEecCC------ceEEeeeecCcCccCeEEcCCCc-EEEEe-CCCc--eEEEe--C
Q 022967           78 GPEDVCVDRNGVLYTA-TRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENE-ILVCD-ADKG--LLKVT--E  144 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~-~~~g~i~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~~--i~~~~--~  144 (289)
                      .-.++++.+||.-+++ +.++.|..|+.+.      +........+.|. -++|.+|-+ +.|+- .++.  +|..+  .
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            3566899888876644 4677777777221      1111112235677 888887765 33332 3343  45555  3


Q ss_pred             CC-e-EEEEe--ccCCccccCccceEEc-CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC
Q 022967          145 EG-V-TVLAS--HVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (289)
Q Consensus       145 ~g-~-~~~~~--~~~~~~~~~~~~l~~~-~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  219 (289)
                      +| . ...+.  ...-.+.+...-+.++ .++..|+...+                ....|..++.++.-+..+......
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~  230 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSS  230 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeecccccc
Confidence            45 2 11111  1111111222222222 24445554433                124577777763333333333222


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      -.--+++|+|+++.++. .+-.|.+|.
T Consensus       231 n~~aavSP~GRFia~~g-FTpDVkVwE  256 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSG-FTPDVKVWE  256 (420)
T ss_pred             ccceeeCCCCcEEEEec-CCCCceEEE
Confidence            33457899999666654 334444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=87.67  E-value=16  Score=32.07  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEE-e-CCCCeEEEeeCCCC--CcceEEEecCCCEEEEEe
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-D-PSLNETSILLDSLF--FANGVALSKDEDYLVVCE  236 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~-~~~~~~~~~~~~~~--~p~gl~~~~d~~~l~v~~  236 (289)
                      ....|++++||.+..+...                 .|.|.|+ . +++.++..+..|..  ....++|++|...|-++ 
T Consensus       175 ~lAalafs~~G~llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s-  236 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS-  236 (391)
T ss_pred             ceeEEEECCCCCEEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe-
Confidence            3458999999998776543                 4666553 3 44445556656644  33568999999955544 


Q ss_pred             CCCCeEEEEEec
Q 022967          237 TFKFRCLKYWLK  248 (289)
Q Consensus       237 ~~~~~i~~~~~~  248 (289)
                      ..+..|-+|.++
T Consensus       237 S~TeTVHiFKL~  248 (391)
T KOG2110|consen  237 SNTETVHIFKLE  248 (391)
T ss_pred             cCCCeEEEEEec
Confidence            666888777764

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=87.52  E-value=2.4  Score=29.21  Aligned_cols=47  Identities=9%  Similarity=-0.097  Sum_probs=30.6

Q ss_pred             cCCeEEEEecCCceEEeeeecCcCccCeEEcCCC-cEEEEeCC-CceEEEe
Q 022967           95 RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGLLKVT  143 (289)
Q Consensus        95 ~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~-~~i~~~~  143 (289)
                      ..+.|..+++ ++..........|+ ||++++++ .|||++.. +.|..+.
T Consensus        34 ~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   34 PWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence            3455666663 33455556667899 99999876 59999865 3454443

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=87.17  E-value=11  Score=35.79  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             CcCccCeEEcCCCcEEEEeCCC-ceEEEeC-CCeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967          116 GDTLLGITTTQENEILVCDADK-GLLKVTE-EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       116 ~~p~~gl~~d~~g~l~v~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      +... ++|+.++|+...+.... .+..+.+ ++.+.+... .+..-....-|.+.-||++.+..+...            
T Consensus       721 dqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk------------  786 (1012)
T KOG1445|consen  721 DQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWACDGRIVIVVGFDK------------  786 (1012)
T ss_pred             Ccee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEecCcEEEEecccc------------
Confidence            4456 89999999876654333 3555553 332222221 111111222456666777666544311            


Q ss_pred             ecCCCEEEEEeCCCCeEE----EeeCCCCCcceE--EEecCCCEEEEEeCCCCeEEEEEec
Q 022967          194 AKPHGKLLKYDPSLNETS----ILLDSLFFANGV--ALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~----~~~~~~~~p~gl--~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                       ...-.|..||.++-...    ...+  ..|.-+  ..++|.+.|+++.-+...|+.|.+.
T Consensus       787 -~SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  787 -SSERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             -cchhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEec
Confidence             01123555554421111    1111  112222  3567888899998888899998864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=87.03  E-value=19  Score=30.93  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             CEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          198 GKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +.|-.+|+..+...-...+. ....++..+++|. ...++...+.+.++|+.
T Consensus       196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             CceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEec
Confidence            45666677555544444443 3457899999998 55666777888888875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.90  E-value=20  Score=35.48  Aligned_cols=148  Identities=12%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             CcceEEEccCCCEE--EEecCCeEEEEe-cCC-ceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eEE
Q 022967           78 GPEDVCVDRNGVLY--TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTV  149 (289)
Q Consensus        78 ~p~~l~~d~~g~l~--v~~~~g~i~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~~  149 (289)
                      +.-++++.|. +-|  ++..+|.|..|| .=| -+.+|....|... |+.|++.+-|+|+..+. .|-.++ +..  +-.
T Consensus        11 RvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen   11 RVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            3455677765 444  555789888888 223 2445555556666 99999999999986443 233333 222  111


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d  228 (289)
                      +...     +-..+.+.+.+.- =|+-..+                ..-.|..++-++++...+..|..+- ---.|+|.
T Consensus        89 L~GH-----lDYVRt~~FHhey-PWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   89 LLGH-----LDYVRTVFFHHEY-PWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             hccc-----cceeEEeeccCCC-ceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence            1111     1123333443332 1222211                1123333444444443344443322 12357886


Q ss_pred             CCEEEEEeCCCCeEEEEEecCC
Q 022967          229 EDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+ ++|+.+-...|++||+.|-
T Consensus       147 ED-lIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  147 ED-LIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             cc-eEEEecccceEEEEeecch
Confidence            66 8899898999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=86.64  E-value=20  Score=31.04  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=36.2

Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ...|..+.++|.|+.|-++  ....|..|.....  ...+.+.+...+-..+|..+.+|.+.+.+
T Consensus       331 g~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g--~~~~~~e~~h~~~Is~is~~~~g~~~atc  391 (420)
T KOG2096|consen  331 GSEPVRLELSPSGDSLAVS--FGSDLKVFASEDG--KDYPELEDIHSTTISSISYSSDGKYIATC  391 (420)
T ss_pred             CCCceEEEeCCCCcEEEee--cCCceEEEEcccC--ccchhHHHhhcCceeeEEecCCCcEEeee
Confidence            4567789999999966555  3356776654321  11111211222345678899999776654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.64  E-value=13  Score=30.35  Aligned_cols=51  Identities=10%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             CCcEEEEeCC-CceEEEe-CCC-eEEEEec--------cCCccccCccceEEcCCC-cEEEee
Q 022967          127 ENEILVCDAD-KGLLKVT-EEG-VTVLASH--------VNGSRINLADDLIAATDG-SIYFSV  177 (289)
Q Consensus       127 ~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~--------~~~~~~~~~~~l~~~~dG-~lyv~~  177 (289)
                      +|.+|.--.. .+|.|++ .+| +....+.        ......+.+|||+.++++ ++|++-
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6776654322 5699999 677 4333221        122234578899999976 899874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.53  E-value=33  Score=33.29  Aligned_cols=160  Identities=15%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eEEEEe
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~~~~~  152 (289)
                      .-+++.+..+..+..+..++.|..|+.+ ++... .-.++..+ +..|-+.++..+....+ .+..++ .+.  ++.+. 
T Consensus       375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciR-Ti~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-  451 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIR-TITCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-  451 (888)
T ss_pred             heeEEEeecCceeeeecCCCcEEEEEccCcceeE-EeccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-
Confidence            3556777666555555567778888743 43221 12344555 55565544433333333 366666 444  33321 


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCc-cCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTK-FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      ...    .....|+..||+.=+++.+.-+ ..+.++-...-++....+++.+..+  +.   .+--...-.+.++||+++
T Consensus       452 AHd----gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~--rt---Lel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  452 AHD----GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT--RT---LELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             ccc----cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc--eE---EeccccEEEEEEcCCCcE
Confidence            111    1356778888876555543210 0000000000000000111111100  00   111122345689999997


Q ss_pred             EEEEeCCCCeEEEEEecCC
Q 022967          232 LVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~  250 (289)
                      |-|+ .-++++-+|-+++-
T Consensus       523 LaVs-LLdnTVkVyflDtl  540 (888)
T KOG0306|consen  523 LAVS-LLDNTVKVYFLDTL  540 (888)
T ss_pred             EEEE-eccCeEEEEEecce
Confidence            6666 55689999988753

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=86.33  E-value=11  Score=32.68  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             EEEcc-CCCEE-EEecCCeEEEEecCC-ceEEeee-ecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-C-CC--eEEEE
Q 022967           82 VCVDR-NGVLY-TATRDGWIKRLHKNG-TWENWKL-IGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E-EG--VTVLA  151 (289)
Q Consensus        82 l~~d~-~g~l~-v~~~~g~i~~~~~~g-~~~~~~~-~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~-~g--~~~~~  151 (289)
                      +++.| +-.++ +++...++-.+..++ ....... ..+... -|.+.++|+ ||..... ..|..+| . .+  +-.+.
T Consensus       213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT-hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~  291 (406)
T KOG2919|consen  213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT-HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE  291 (406)
T ss_pred             eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee-eEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence            45555 22233 665444444444333 2222222 222233 677888885 5554432 3577776 2 22  11111


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-Ce-EEEeeCCCCCcceEEEecCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE-TSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~-~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ........+.  -+..+|+|++..+-..                 .|.|.++|.++ +. +.++..-....||++++|-=
T Consensus       292 rhv~~TNQRI--~FDld~~~~~LasG~t-----------------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  292 RHVGDTNQRI--LFDLDPKGEILASGDT-----------------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             hhccCccceE--EEecCCCCceeeccCC-----------------CccEEEEecCCCCCcccccccccccccceecCccc
Confidence            1111111111  2344567777665322                 46677777664 33 33333334567899999873


Q ss_pred             CEEEEEeCCCCeEEEEEec
Q 022967          230 DYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~  248 (289)
                      - +..+ ...++++.+.-+
T Consensus       353 p-ilat-ssGqr~f~~~~d  369 (406)
T KOG2919|consen  353 P-ILAT-SSGQRIFKYPKD  369 (406)
T ss_pred             c-eeee-ccCceeecCCCc
Confidence            2 4444 445888877544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=86.28  E-value=9  Score=35.71  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CeEEc-CCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          121 GITTT-QENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d-~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      .|..+ +.-.||++..+..|||++ ..|  +.++.....     ..+.+.+.+-..|..+.+                 .
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~Gt-----------------~  195 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLACGT-----------------E  195 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccc-----cceeeeecCccceEEecc-----------------c
Confidence            34444 344699988888899999 778  565543321     234455555333333211                 2


Q ss_pred             CCEEEEEeCCCCeEEE-e-----------eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          197 HGKLLKYDPSLNETSI-L-----------LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~-~-----------~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .|.|-.+||..+.... +           .+....+..+.|+.+|=.+-|. +..+.++.||+-.
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG-ts~G~v~iyDLRa  259 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG-TSTGSVLIYDLRA  259 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee-ccCCcEEEEEccc
Confidence            3566666765433211 1           1123345677888766555555 5567889998754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.19  E-value=32  Score=32.89  Aligned_cols=91  Identities=15%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             EEEccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEEeccCCccc
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRI  159 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~  159 (289)
                      ++.-+++.+..++.+..|..|..+.....+.....-.. |+++-+++.+.-|..+.-|..++-+|  +......     .
T Consensus       146 v~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VR-gL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh-----t  219 (745)
T KOG0301|consen  146 VASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVR-GLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH-----T  219 (745)
T ss_pred             eeecCCCcEEeccCcceeeeccCCchhhhhccchhhee-eeEEecCCCeEeecCCceEEEEeccCceeeeeecc-----c
Confidence            44444554445555555555543222333332223345 78876666666565433344455445  4333221     1


Q ss_pred             cCccceEEcCCCcEEEeeC
Q 022967          160 NLADDLIAATDGSIYFSVA  178 (289)
Q Consensus       160 ~~~~~l~~~~dG~lyv~~~  178 (289)
                      ++.+.+....++.+.++.+
T Consensus       220 n~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  220 NFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             eEEEEEEecCCCCeEEEec
Confidence            3566777666666777764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.99  E-value=8.3  Score=34.79  Aligned_cols=103  Identities=15%  Similarity=0.087  Sum_probs=55.1

Q ss_pred             ccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC--cceEEEecCCCEEEEEeCC
Q 022967          162 ADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF--ANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       162 ~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~--p~gl~~~~d~~~l~v~~~~  238 (289)
                      ...+.+.|||+. .++...             .+.....|+.+|.++|+...  +.+..  ..++.|.+|++.+|.+...
T Consensus       126 ~~~~~~Spdg~~la~~~s~-------------~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~  190 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSD-------------GGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFD  190 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEE-------------TTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECS
T ss_pred             eeeeeECCCCCEEEEEecC-------------CCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeC
Confidence            346778899863 333211             11222468889998886532  22222  2338999999988877643


Q ss_pred             C----------CeEEEEEecCCCCcceeeeeccCCCC-CCceeeCCCCCEEE
Q 022967          239 K----------FRCLKYWLKGESKEQTEIFVENLPGG-PDNIKLAPDGSFWI  279 (289)
Q Consensus       239 ~----------~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~i~~d~~G~lwv  279 (289)
                      .          ++|+++.+.........+|......+ --++..+.||.+.+
T Consensus       191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~  242 (414)
T PF02897_consen  191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLF  242 (414)
T ss_dssp             TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEE
T ss_pred             cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEE
Confidence            3          34777776543323334443222222 23566778886543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=85.94  E-value=2  Score=42.02  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEecCCce-EEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~  143 (289)
                      =.+++-+.+|.|.|++.+|.|..++..|+. .+...+.|.|+.||-+..||+..++....-|+.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            356788889999999999999999966632 22233457787699999999988887766676665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.50  E-value=26  Score=31.22  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC--cCccCeEEcCCC---cEEEEeCC---CceEEEe---CCC
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQEN---EILVCDAD---KGLLKVT---EEG  146 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g---~l~v~~~~---~~i~~~~---~~g  146 (289)
                      -+++.+.+||.+.+........+|+ .+|..-.......  .....+.|..|+   .|+++...   .++...+   .++
T Consensus       189 V~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  189 VKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG  268 (398)
T ss_pred             cccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence            4668888999877554333444554 3552111111111  111134454444   56666432   2232222   111


Q ss_pred             --eEEEEeccCCccccCccceEEcCCCcEEE-eeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcc
Q 022967          147 --VTVLASHVNGSRINLADDLIAATDGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN  221 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~dG~lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~  221 (289)
                        +-....  .-.+++....|+|+.||++.. +..                  .|.|..|+..+-+...+.  .......
T Consensus       269 ~~~l~~~~--~~~~~~siSsl~VS~dGkf~AlGT~------------------dGsVai~~~~~lq~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  269 SNFLRLRK--KIKRFKSISSLAVSDDGKFLALGTM------------------DGSVAIYDAKSLQRLQYVKEAHLGFVT  328 (398)
T ss_pred             ccccchhh--hhhccCcceeEEEcCCCcEEEEecc------------------CCcEEEEEeceeeeeEeehhhheeeee
Confidence              111111  112345788999999998543 432                  367888876543333332  1234678


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ++.|+||.+.+-= -+..++...+.+.
T Consensus       329 ~ltF~Pdsr~~~s-vSs~~~~~v~~l~  354 (398)
T KOG0771|consen  329 GLTFSPDSRYLAS-VSSDNEAAVTKLA  354 (398)
T ss_pred             eEEEcCCcCcccc-cccCCceeEEEEe
Confidence            9999999884433 3344555555444

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.05  E-value=26  Score=30.84  Aligned_cols=53  Identities=19%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             CCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          197 HGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ...|-.+|..++.... +.....+..+++|+|.|++|. +...+..|.+||+...
T Consensus       313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKNL  366 (406)
T ss_pred             cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEeccc
Confidence            3556666776665432 334567788999999999554 4466788999998753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.60  E-value=11  Score=33.26  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=53.5

Q ss_pred             cEEEEeCC--CceEEEeCCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEE
Q 022967          129 EILVCDAD--KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (289)
Q Consensus       129 ~l~v~~~~--~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~  203 (289)
                      -||++...  ..|+.++.++  .+.+..    .......-+.+++++ .|||+...             +....-.||++
T Consensus       250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~----G~~~V~~i~~~d~~~~~iyf~a~~-------------~~p~~r~lY~v  312 (353)
T PF00930_consen  250 FLWISERDGYRHLYLYDLDGGKPRQLTS----GDWEVTSILGWDEDNNRIYFTANG-------------DNPGERHLYRV  312 (353)
T ss_dssp             EEEEEETTSSEEEEEEETTSSEEEESS-----SSS-EEEEEEEECTSSEEEEEESS-------------GGTTSBEEEEE
T ss_pred             EEEEEEcCCCcEEEEEcccccceecccc----CceeecccceEcCCCCEEEEEecC-------------CCCCceEEEEE
Confidence            46666632  3588888444  443321    122222345677765 68887653             11233479999


Q ss_pred             eCC-CCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967          204 DPS-LNETSILLDSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       204 ~~~-~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      +.+ +++.+.+-.....-..+.++|+++++....+
T Consensus       313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            998 7887776443332248899999997666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.57  E-value=29  Score=30.86  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             cCCCEEEEEeCCCCeEEEee-CCCCC-cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967          195 KPHGKLLKYDPSLNETSILL-DSLFF-ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (289)
Q Consensus       195 ~~~g~i~~~~~~~~~~~~~~-~~~~~-p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  272 (289)
                      ...+.+-.||+..++.-+.. +-..+ -..+...|+++.+|++++. ..+..||..+..+..+  +.....|.++.|-..
T Consensus       223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g~--~~kg~tGsirsih~h  299 (412)
T KOG3881|consen  223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLGC--GLKGITGSIRSIHCH  299 (412)
T ss_pred             ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeecc--ccCCccCCcceEEEc
Confidence            34577888998854432221 11222 3456788999999999775 7899999876544322  233445667777777


Q ss_pred             CCCCEEEE
Q 022967          273 PDGSFWIA  280 (289)
Q Consensus       273 ~~G~lwv~  280 (289)
                      +.+.+...
T Consensus       300 p~~~~las  307 (412)
T KOG3881|consen  300 PTHPVLAS  307 (412)
T ss_pred             CCCceEEe
Confidence            66555443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=83.99  E-value=22  Score=33.05  Aligned_cols=85  Identities=16%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             CEEEEecCCeEEEEecCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eE-EEEeccCCccccCccc
Q 022967           89 VLYTATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-VLASHVNGSRINLADD  164 (289)
Q Consensus        89 ~l~v~~~~g~i~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~-~~~~~~~~~~~~~~~~  164 (289)
                      .+.+.+.+|++..++..|+++.... .++... .-.+.+||.=.++....|+.++- .+| ++ .++..     -...+.
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c  150 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRC  150 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEE
Confidence            3447778899999988888775443 233334 45577888755655557777766 677 43 23221     124667


Q ss_pred             eEEcCCC-cEEEeeCC
Q 022967          165 LIAATDG-SIYFSVAS  179 (289)
Q Consensus       165 l~~~~dG-~lyv~~~~  179 (289)
                      ++++|+. ++.++.+.
T Consensus       151 ~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGG  166 (737)
T ss_pred             EEECCCCCceEEecCC
Confidence            8888875 56666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.97  E-value=35  Score=31.38  Aligned_cols=147  Identities=16%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe--CCC
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG  146 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~--~~g  146 (289)
                      ..++.. -..|..+...|+|+..+-..+|....+...+-... .  .+... ..+|...+++.+.+..+.|..+.  ++.
T Consensus        26 k~lg~~-~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-~--~G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   26 KELGSC-EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-A--FGSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEEEE--SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-E--EEE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             ccCCCC-CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-c--cCcee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence            344443 24599999999999886577776666663222111 1  13334 56666666655556434343322  111


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~  225 (289)
                       ...+...      ..+.+|.-   |.+.....                  .+.|..||-++++...-.+ ......+.|
T Consensus       101 ~~k~i~~~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~-v~~vk~V~W  152 (443)
T PF04053_consen  101 VVKSIKLP------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRID-VSAVKYVIW  152 (443)
T ss_dssp             TT-----S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEES-S-E-EEEEE
T ss_pred             cceEEcCC------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEe-cCCCcEEEE
Confidence             1111111      01222322   65444332                  2468889887665433322 112378899


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEec
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +++++.+-+.....--|.+|+.+
T Consensus       153 s~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  153 SDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             -TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             ECCCCEEEEEeCCeEEEEEecch
Confidence            99998777664433344455544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=83.95  E-value=9.1  Score=35.64  Aligned_cols=65  Identities=12%  Similarity=-0.064  Sum_probs=49.0

Q ss_pred             CcceEEEcc-CCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe
Q 022967           78 GPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT  143 (289)
Q Consensus        78 ~p~~l~~d~-~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~  143 (289)
                      .+.+.+..+ +..+.+++.||.|..+|.+-..+......-.|. -++++++|.+++.... ..+..+|
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence            567788888 446679999999999996555555666566788 9999999987776544 4477777

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.65  E-value=32  Score=30.70  Aligned_cols=39  Identities=28%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCc-ceEEEecCCCEEEEEe
Q 022967          198 GKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCE  236 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~  236 (289)
                      ..+++||+.+++...+......+ .+.++...++.||+..
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G  228 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN  228 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence            46999999988887664321111 2222222234488764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=83.57  E-value=43  Score=32.16  Aligned_cols=113  Identities=11%  Similarity=0.051  Sum_probs=59.1

Q ss_pred             cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc------EEEeeCCCccCccccc
Q 022967          117 DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS------IYFSVASTKFGLHNWG  188 (289)
Q Consensus       117 ~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~------lyv~~~~~~~~~~~~~  188 (289)
                      +.. +.++..||.+++-...+|-..+. +.| .+..+.. +|.+.....++++.|...      +-|.|=          
T Consensus       134 R~~-~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~~di~aV~DW----------  201 (1081)
T KOG1538|consen  134 RII-CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER-PGGSNSPIWSICWNPSSGEGRNDILAVADW----------  201 (1081)
T ss_pred             eEE-EeeecCCCcEEEEeccCceEEeecCCCCcceEEeC-CCCCCCCceEEEecCCCCCCccceEEEEec----------
Confidence            345 67777788776665556544443 556 4333332 333344556777776421      222221          


Q ss_pred             cccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          189 LDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       189 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                              +-.+-.+..++..+..-..-...|.-+..-++|+++.+... ...+..|..+|-
T Consensus       202 --------~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gv  254 (1081)
T KOG1538|consen  202 --------GQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGV  254 (1081)
T ss_pred             --------cceeEEEEecceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCe
Confidence                    12233333332222211112234666777788998888754 366777776664

>PHA03098 kelch-like protein; Provisional

Probab=83.31  E-value=40  Score=31.60  Aligned_cols=145  Identities=15%  Similarity=0.061  Sum_probs=70.7

Q ss_pred             CCCEEE-EecC------CeEEEEe-cCCceEEeeeec-Cc-CccCeEEcCCCcEEEEeCC------CceEEEe-CCC-eE
Q 022967           87 NGVLYT-ATRD------GWIKRLH-KNGTWENWKLIG-GD-TLLGITTTQENEILVCDAD------KGLLKVT-EEG-VT  148 (289)
Q Consensus        87 ~g~l~v-~~~~------g~i~~~~-~~g~~~~~~~~~-~~-p~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g-~~  148 (289)
                      ++.||+ |..+      ..+++++ .+.++....... .+ -. +++. -+|.||+....      ..+.+++ .++ .+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            567884 3211      2467777 345554432211 11 12 3443 35789987432      2366777 444 44


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-ceE-EEe
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGV-ALS  226 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-~gl-~~~  226 (289)
                      .... .+...  .... ++.-+|+||+..+....           ......+++||+.+++++....- ..+ .+. +..
T Consensus       372 ~~~~-lp~~r--~~~~-~~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~  435 (534)
T PHA03098        372 EEPP-LIFPR--YNPC-VVNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSPL-PISHYGGCAIY  435 (534)
T ss_pred             eCCC-cCcCC--ccce-EEEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCCC-CccccCceEEE
Confidence            3321 11111  1112 23347899997542110           01135689999998887765421 111 111 222


Q ss_pred             cCCCEEEEEeCC--------CCeEEEEEecCC
Q 022967          227 KDEDYLVVCETF--------KFRCLKYWLKGE  250 (289)
Q Consensus       227 ~d~~~l~v~~~~--------~~~i~~~~~~~~  250 (289)
                      .+ +.+|+....        ...+++||....
T Consensus       436 ~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        436 HD-GKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             EC-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence            23 458886421        124888887654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=83.04  E-value=35  Score=30.71  Aligned_cols=146  Identities=10%  Similarity=-0.020  Sum_probs=78.7

Q ss_pred             EEEcc--CCCEEEEecCCeEEEEecCC--c----e---EEeeeecCcCccCeEEcCC-CcEEEEeCC-CceEEEe-CCC-
Q 022967           82 VCVDR--NGVLYTATRDGWIKRLHKNG--T----W---ENWKLIGGDTLLGITTTQE-NEILVCDAD-KGLLKVT-EEG-  146 (289)
Q Consensus        82 l~~d~--~g~l~v~~~~g~i~~~~~~g--~----~---~~~~~~~~~p~~gl~~d~~-g~l~v~~~~-~~i~~~~-~~g-  146 (289)
                      |...+  .|.|..+..++.|..++.+.  .    .   ..+........ .+++... ..||.+..+ ..+...| ..+ 
T Consensus       183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            44444  46677677788888888221  1    1   11111222233 5666532 345554333 4455555 222 


Q ss_pred             --eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCCCCCcce
Q 022967          147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANG  222 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~~~~p~g  222 (289)
                        .........    .-.+.+++.|-+...++.++                ..+.|..+|.+.-.  +-.+...-..-..
T Consensus       262 ~~~~~~~~ah~----~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~  321 (422)
T KOG0264|consen  262 SKPSHSVKAHS----AEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ  321 (422)
T ss_pred             CCCcccccccC----CceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence              111111111    13567888885544444433                24667777765321  2222222333456


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +.|+|..+.+..+....+++.+||+.
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEecc
Confidence            88999999898888788999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=83.01  E-value=32  Score=30.29  Aligned_cols=70  Identities=7%  Similarity=-0.044  Sum_probs=39.5

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g  146 (289)
                      ..-+.+...|.+.++ +++.+|.++.|. +++...+...+.+.+.+.=.|-++|+..+ ......|..++ +.|
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence            344556777777766 777899999998 45433333332233322222336775444 44334466677 667

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=82.52  E-value=54  Score=32.49  Aligned_cols=59  Identities=17%  Similarity=0.153  Sum_probs=37.3

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecC---------cCccCeEEc-----------------CCCcEEEEeCCCce
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTT-----------------QENEILVCDADKGL  139 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~---------~p~~gl~~d-----------------~~g~l~v~~~~~~i  139 (289)
                      +|.||+.+.++.|+.+| .+|+...-.....         ... |+++.                 .+++||+...+.++
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            68999999889999999 5676432111100         011 33221                 23478888776778


Q ss_pred             EEEe-CCC
Q 022967          140 LKVT-EEG  146 (289)
Q Consensus       140 ~~~~-~~g  146 (289)
                      +.+| ++|
T Consensus       273 iALDA~TG  280 (764)
T TIGR03074       273 IALDADTG  280 (764)
T ss_pred             EEEECCCC
Confidence            9999 677

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.18  E-value=29  Score=30.81  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=60.5

Q ss_pred             CeEEcCC--CcEEE-EeCCCceEEEe-CCCeEEEEe-ccCCccccCccceEEcCCCc-EEEeeCCCccCcccccccccee
Q 022967          121 GITTTQE--NEILV-CDADKGLLKVT-EEGVTVLAS-HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEA  194 (289)
Q Consensus       121 gl~~d~~--g~l~v-~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~  194 (289)
                      ++.|-+.  ..-++ +...+.+..|| ..+.+++.. ...   -+....+...|+|+ ||+++..               
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~gn~Iy~gn~~---------------  268 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPSGNFIYTGNTK---------------  268 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCCCcEEEEeccc---------------
Confidence            4555432  23333 34445566677 334222221 111   13456778889985 7888754               


Q ss_pred             cCCCEEEEEeCCCCeEEEe-eCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          195 KPHGKLLKYDPSLNETSIL-LDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       195 ~~~g~i~~~~~~~~~~~~~-~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                         +.|..||..++..... ..+. ..+.+|..+|... +..+..-.+-|++||.+..
T Consensus       269 ---g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  269 ---GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ---chhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence               7788899876655432 2332 3467788887766 3333334455777887764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=82.10  E-value=26  Score=31.10  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=26.0

Q ss_pred             CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          208 NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       208 ~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +..+.....+..-.-+++++|+++++.+|.. ..|++.+..
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~yp  181 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRYP  181 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEecC
Confidence            3444444555556678999999988888775 445554433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.50  E-value=35  Score=29.58  Aligned_cols=147  Identities=8%  Similarity=0.026  Sum_probs=65.1

Q ss_pred             cceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCce--EEEeCCC-eEEEEec
Q 022967           79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL--LKVTEEG-VTVLASH  153 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i--~~~~~~g-~~~~~~~  153 (289)
                      -.++++.|.|.|-.+- .++.+..|+ -.|+......-...+. -+.|++.|.-|+....++|  |..+... +..+...
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~  208 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP  208 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc
Confidence            3445555555555333 333344444 3343322222223344 5777777763333323443  3333111 2211110


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeCCCCCcceEE-EecCCCE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVA-LSKDEDY  231 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~p~gl~-~~~d~~~  231 (289)
                            ..+..+.+...+.+.++-.                  ++.|...|.+.+.. ..+...-....++. +.....+
T Consensus       209 ------~r~l~~~~l~~~~L~vG~d------------------~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  209 ------KRILCATFLDGSELLVGGD------------------NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             ------ccceeeeecCCceEEEecC------------------CceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence                  1233444554555655532                  35566677654221 11111112223444 2322335


Q ss_pred             EEEEeCCCCeEEEEEecCC
Q 022967          232 LVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++++-+..+.|.+||++-.
T Consensus       265 ~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEEeccCceEEEEEcccc
Confidence            7777777788888887643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=81.36  E-value=18  Score=33.80  Aligned_cols=45  Identities=7%  Similarity=0.154  Sum_probs=27.3

Q ss_pred             EeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       203 ~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +|+.+|+.-...+....-|-+++-|+++.++.+.. +..+-.|.+.
T Consensus       299 Wd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~yyiP  343 (703)
T KOG2321|consen  299 WDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTYYIP  343 (703)
T ss_pred             cccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeEEcc
Confidence            45555665444444455677888898886666643 4555555543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=81.05  E-value=40  Score=30.00  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=78.6

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe--cCCc-eEEe--eeecCcCccCeEEcCCC-cEEEEeCCCceEEEe-C--C-C-
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH--KNGT-WENW--KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E--E-G-  146 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~--~~g~-~~~~--~~~~~~p~~gl~~d~~g-~l~v~~~~~~i~~~~-~--~-g-  146 (289)
                      +..+...++|+|. +++...+.+.++  .+-+ ...+  .....++. .+.+..+. .+.|++...-++.++ -  + + 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            4444555567765 666655554554  2222 1111  12234566 77766443 466777555566665 1  1 3 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEE
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVAL  225 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~  225 (289)
                      -+.+..     -.....++++.+|+.+.++...               ...-+|.+|. ....++.+.- .-.+-.++++
T Consensus       144 ~~~~lG-----hvSml~dVavS~D~~~IitaDR---------------DEkIRvs~yp-a~f~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  144 CEPILG-----HVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYP-ATFVIESFCLGHKEFVSTISL  202 (390)
T ss_pred             cchhhh-----hhhhhheeeecCCCCEEEEecC---------------CceEEEEecC-cccchhhhccccHhheeeeee
Confidence            222211     1235679999999876665432               0123455553 2233333322 2345566776


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecC
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .++  ++.++..+.+.|+.||...
T Consensus       203 ~~~--~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  203 TDN--YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             ccC--ceeeecCCCCcEEEEeccc
Confidence            643  3677778899999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=80.85  E-value=36  Score=29.33  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             cceEEEcc-CCCEE-EEecCCeEEEEe--cCCceEEee--eecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEE
Q 022967           79 PEDVCVDR-NGVLY-TATRDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTV  149 (289)
Q Consensus        79 p~~l~~d~-~g~l~-v~~~~g~i~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~  149 (289)
                      -..|++.| ...+. .++.+|.|..|+  .+|...-..  ...+-++ .+.+..||. +|.+..+..+-.+| .+| ...
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL-~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVL-DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeE-EEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence            34467777 55666 667889888887  345433211  2223445 888888885 66666656677777 666 555


Q ss_pred             EE
Q 022967          150 LA  151 (289)
Q Consensus       150 ~~  151 (289)
                      +.
T Consensus       109 v~  110 (347)
T KOG0647|consen  109 VA  110 (347)
T ss_pred             ee
Confidence            43

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=80.70  E-value=35  Score=29.32  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=50.2

Q ss_pred             CeEEcCC-CcEEEEeCCCceEEEe-C-CCeE-EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQE-NEILVCDADKGLLKVT-E-EGVT-VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~-g~l~v~~~~~~i~~~~-~-~g~~-~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      .+.|++. +.|.++.....+..++ + +... .+...      ....+.++.++-.+|++.-                  
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~------~plL~c~F~d~~~~~~G~~------------------   73 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG------APLLDCAFADESTIVTGGL------------------   73 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC------CceeeeeccCCceEEEecc------------------
Confidence            5667643 4677777655455555 2 2221 11111      1233566767777777653                  


Q ss_pred             CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      .|.|.++|..++....+..+......|...+..+ ..|+....++|..||
T Consensus        74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWD  122 (323)
T ss_pred             CceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEe
Confidence            3667777776665544433333333444443222 344444444444444

>PHA02790 Kelch-like protein; Provisional

Probab=80.67  E-value=48  Score=30.75  Aligned_cols=136  Identities=13%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             CCCEEE-Eec--CCeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC----CceEEEe-CCC-eEEEEeccC
Q 022967           87 NGVLYT-ATR--DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD----KGLLKVT-EEG-VTVLASHVN  155 (289)
Q Consensus        87 ~g~l~v-~~~--~g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~----~~i~~~~-~~g-~~~~~~~~~  155 (289)
                      +|.||+ |..  ...+.++++ .+++.....-. .+...+.+. -+|.||+....    ..+.++| ..+ .+.... ..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-TY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-CC
Confidence            678884 322  234667763 34444332211 111102333 36899997421    2356677 334 443321 11


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEE
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLV  233 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~  233 (289)
                         .......++.-+|.||+.-                    |.+.+||+++++++.+..-.  +.-.+++.- +++ +|
T Consensus       396 ---~~r~~~~~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~-IY  450 (480)
T PHA02790        396 ---YPHYKSCALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNK-LL  450 (480)
T ss_pred             ---CccccceEEEECCEEEEEC--------------------CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCE-EE
Confidence               1111122334578999973                    34677899988887764321  122344433 344 88


Q ss_pred             EEeCC-----CCeEEEEEecC
Q 022967          234 VCETF-----KFRCLKYWLKG  249 (289)
Q Consensus       234 v~~~~-----~~~i~~~~~~~  249 (289)
                      +.-..     ...+.+||+..
T Consensus       451 viGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        451 LIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             EECCcCCCcccceEEEEECCC
Confidence            87321     13455666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		5e-15
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-15
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-13

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 81  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 140
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E    + 
Sbjct: 141 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 200
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 201 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E    + 
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N+  + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                      +   G+L KYDPS  ET++L   L    G  +S D  +++V E    + 
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	2e-59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	3e-27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	5e-24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	1e-18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	1e-16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	6e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	2e-14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	8e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	7e-04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	4e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  191 bits (486), Expect = 2e-59
 Identities = 62/246 (25%), Positives = 95/246 (38%), Gaps = 27/246 (10%)

Query: 61  TTSDIQSVTRLGEGILNGPEDVCVDRNG-VLYTATRDGWIKRLHKNG--------TWENW 111
             S       L E     P     D      YT+ +DG + +                 W
Sbjct: 3   ALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW 62

Query: 112 KLIGGDTL------------LGIT-TTQENEILVCDADKGLLKVTEEG--VTVLASHVNG 156
                +                I+   Q N++ + D    L  V  EG   T LA+ V+G
Sbjct: 63  NKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDG 122

Query: 157 SRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215
                   + +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL 
Sbjct: 123 VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182

Query: 216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275
            L    G  +S D  +++V E    + +KYWL+G  K   E+ V  +P  P NIK   DG
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIP-NPGNIKRNADG 240

Query: 276 SFWIAI 281
            FW++ 
Sbjct: 241 HFWVSS 246

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  107 bits (268), Expect = 3e-27
 Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 37/284 (13%)

Query: 30  LLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV 89
           L A TL     +             +     T  ++ +   + +GI NG ED+ +  NG+
Sbjct: 4   LTALTLLGMGLALFDRQKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62

Query: 90  LYTATRDGWIKRLH----------------KNGTWENWKLIGGDT------LLGITTTQE 127
            + ++   +   +                 K       ++IG           GI+T  +
Sbjct: 63  AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122

Query: 128 NE----ILVCDADKG------LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSV 177
           ++    +LV +               EE   +    +    +   +D++A      Y + 
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182

Query: 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
                  +    ++        +  Y P  N+  ++ +   FANG+ +S D  Y+ + E 
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAEL 240

Query: 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIA 280
              +   Y         T + V +     DNI + P  G  W+ 
Sbjct: 241 LAHKIHVYEKHAN-WTLTPLRVLSFDTLVDNISVDPVTGDLWVG 283

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 97.9 bits (244), Expect = 5e-24
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 28/238 (11%)

Query: 67  SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI-----KRLHK----NGTWENWKLIGGD 117
             T++ E  + G E    D+NG  Y    +  +       + +     G          +
Sbjct: 9   LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN 67

Query: 118 TLLGIT-----TTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD 170
              GI          N++ V D   GLL V  +G    +      G R+   +D     +
Sbjct: 68  GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE 127

Query: 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230
           G+++ +  +    +          +  G +  +     +   +  +  F NG+A+    D
Sbjct: 128 GNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMND 184

Query: 231 ----YLVVCETFKFRCLKYWLKGESK-EQTEIFVE---NLPGGPDNIKLAPDGSFWIA 280
                L+V ET   +   Y +KG +K E  +++        GG D +    D +  +A
Sbjct: 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 20/251 (7%)

Query: 41  SPISPDLLLLPPASSASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRD 96
            P   D   +  A+ A+ +     + ++       EG    P     +    L  +    
Sbjct: 14  VPADCDPPRITHAALAARLGDAR-LLTLYDQATWSEG----P--AWWEAQRTLVWSDLVG 66

Query: 97  GWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEE--GVTVLASHV 154
             +    ++GT +        T  G     +  ++ C+  +  +  ++      +L    
Sbjct: 67  RRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY 125

Query: 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
            G R+N  +DLI A DG+I+F+         + G        H  + +  P  +     +
Sbjct: 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM 184

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI-----FVENLPGGPDNI 269
             L   NG+A S DE  L V +T +       +   +     +     F     G PD  
Sbjct: 185 ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF 244

Query: 270 KLAPDGSFWIA 280
            +   G  W +
Sbjct: 245 CVDRGGWLWSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 17/233 (7%)

Query: 56  ASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENW 111
             L P  ++ + +       EG    P  V V     +  +  R         +G     
Sbjct: 11  LDLFPAGAEARRLADGFTWTEG----P--VYVPARSAVIFSDVRQNRTWAWSDDGQLSPE 64

Query: 112 KLIGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAA 168
                    G    ++  ++ C    + L +  E G     +A    G ++N  +D+  A
Sbjct: 65  MHPSHHQN-GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA 123

Query: 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228
            DGS++FS  +        G       P   + +  P     S  +      NG+A    
Sbjct: 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS 182

Query: 229 EDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIA 280
            + L+V +T      +Y L    + E   +     PG  D +++   G  W +
Sbjct: 183 GN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 72.9 bits (179), Expect = 6e-15
 Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 49/263 (18%)

Query: 45  PDLLLLPPASSASLIPTTSDIQSVT------RLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           P L     ++SA  I + S++Q++T         +G+    E +  DR G L+       
Sbjct: 9   PTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQ--LEGLNFDRQGQLF------L 60

Query: 99  I----KRLHK----NGTWENWKLIGGDTLLGITTTQENEILVCD-----ADKGLLKVTEE 145
           +      + K        +   +        I   ++  + VC      +  G+   TE 
Sbjct: 61  LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120

Query: 146 G--VTVLASHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK 202
           G  +  +   ++ +  I+   D++  + G  YF+                   P G +  
Sbjct: 121 GDNLQDIIEDLSTAYCID---DMVFDSKGGFYFT-----------DFRGYSTNPLGGVYY 166

Query: 203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-----GESKEQTEI 257
             P     + ++ ++  ANG+ALS DE  L V ET   R  +  L+      +    T  
Sbjct: 167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226

Query: 258 FVENLPGGPDNIKLAPDGSFWIA 280
           +      GPD+  +  D + ++A
Sbjct: 227 YYFTGHEGPDSCCIDSDDNLYVA 249

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 24/238 (10%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 8   LPPIYADKPIELA-PAKIITSFPVNTF--LENLASAPDGTIFVTNHEVGEIVSITPDGNQ 64

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDADKG----LLKVTEEG-VTVLASHVNGSRINLAD 163
           +    + G  + G+  T   +++    +      +  V  +G V  L +  +   +N   
Sbjct: 65  QIHATVEG-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN--- 120

Query: 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
            +   +D     + +        W +D+   +P G +    P L  ++       F    
Sbjct: 121 GITPLSDTQYLTADSYRGAI---WLIDV--VQPSGSIWLEHPMLARSN---SESVFPAAN 172

Query: 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQT-EIFVENLPGGPDNIKLAPDGSFWIA 280
            L +  ++L V  T K   L+  +    K    EIFVE      D+     +G+ + A
Sbjct: 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGA 228

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 29/214 (13%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTL-LGITTTQENE 129
                     + +  +G ++ T      I R+ K G  + + L   D+   GIT     +
Sbjct: 52  LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           I   + +   + ++T++G +        GS  +    +   +D +++F+           
Sbjct: 112 IWFTEMNGNRIGRITDDGKIREYELPNKGSYPS---FITLGSDNALWFT---------EN 159

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCETFKFRCLKYW 246
                    +  + +   S + T   + +      G+    D D L   E    +  +  
Sbjct: 160 Q--------NNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRIT 210

Query: 247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
             G   E TE  +      P  I        W  
Sbjct: 211 TSG---EITEFKIPTPNARPHAITAGAGIDLWFT 241

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 30/212 (14%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 74  GILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDT-LLGITTTQENEIL 131
               GP  + V   G ++ T  +   I  ++ +G    + L   D  ++ +T + + E+ 
Sbjct: 12  NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVW 71

Query: 132 VCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL 189
             +     + ++T++G +         S       +    +G I+F+  +          
Sbjct: 72  FTENAANKIGRITKKGIIKEYTLPNPDSAPY---GITEGPNGDIWFTEMNG--------- 119

Query: 190 DLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCETFKFRCLKYWLK 248
                    ++ +           L +   + + + L  D + L   E       +    
Sbjct: 120 --------NRIGRITDDGKIREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITES 170

Query: 249 GESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           G+    TE  +     GP  I    D + W  
Sbjct: 171 GDI---TEFKIPTPASGPVGITKGNDDALWFV 199

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 27/181 (14%)

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG-G 116
           I     I+  T       + P  +    NG ++ T      I R+  +G    ++L   G
Sbjct: 83  ITKKGIIKEYT--LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKG 140

Query: 117 DTLLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIY 174
                IT   +N +   +     + ++TE G +T        S       +    D +++
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPV---GITKGNDDALW 197

Query: 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLV 233
           F                       K+ +   S   T   +       + +      D   
Sbjct: 198 FVEIIG-----------------NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWF 240

Query: 234 V 234
            
Sbjct: 241 T 241

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 31/229 (13%)

Query: 57  SLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG 115
           S       ++          +GP  +    +G ++ T  +   I  L ++G  + +++  
Sbjct: 2   SEAWMNFYLEEFNLSIPD--SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPT 59

Query: 116 GDT-LLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS 172
            D  ++ +  +   +I   +     + K++++G  T        S       +    +G 
Sbjct: 60  PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY---GITEGLNGD 116

Query: 173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDY 231
           I+F+  +                   ++ K           L +   +   + L  D + 
Sbjct: 117 IWFTQLNG-----------------DRIGKLTADGTIYEYDLPNKGSYPAFITLGSD-NA 158

Query: 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           L   E       +    G+     E  +      P  I    DG+ W  
Sbjct: 159 LWFTENQNNSIGRITNTGKL---EEYPLPTNAAAPVGITSGNDGALWFV 204

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 29/214 (13%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG-GDTLLGITTTQENE 129
                +GP  +    NG ++ T      I +L  +GT   + L   G     IT   +N 
Sbjct: 99  LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           +   +     + ++T  G +       N +       + +  DG+++F            
Sbjct: 159 LWFTENQNNSIGRITNTGKLEEYPLPTNAAA---PVGITSGNDGALWFV---------EI 206

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246
                      K+ +   +   +   +       + +   K+   +   E    +  +  
Sbjct: 207 M--------GNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQIGRIT 257

Query: 247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
                    E  ++     P  I    DGS W A
Sbjct: 258 NDNTI---QEYQLQTENAEPHGITFGKDGSVWFA 288

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTL- 119
            +  ++ T L    LN P+ V VD +G +Y   T +  + +L       N  ++    + 
Sbjct: 135 AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFTDIT 192

Query: 120 --LGITTTQENEILVCDADKG-LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFS 176
              GI   +   + V + +   ++K+     T   + +  + +N    +   +D ++Y +
Sbjct: 193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVA 250

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 26/222 (11%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTLL 120
            +     T L    L  P+ + VD  G +Y     +  +     +         G +   
Sbjct: 52  ATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE 111

Query: 121 GITTTQENEILVCDADKG-LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179
           G+    +  + V D     ++K+     T       G  +N  D +     G++Y  V  
Sbjct: 112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--LNDPDGVAVDNSGNVY--VTD 167

Query: 180 TKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETF 238
           T     N            +++K +   N   +L    +    G+A+ +    + V E  
Sbjct: 168 T----DN-----------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHN 211

Query: 239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
             + +K      +         N P     + +  D + ++A
Sbjct: 212 TNQVVKLLAGSTTSTVLPFTGLNTPLA---VAVDSDRTVYVA 250

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTL- 119
            ++  +   L    +  P  + VD  G +Y        + +L    T     ++    L 
Sbjct: 177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLN 234

Query: 120 --LGITTTQENEILVCD 134
             L +    +  + V D
Sbjct: 235 TPLAVAVDSDRTVYVAD 251

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 40/232 (17%)

Query: 60  PTTSDIQSVTR-LGEGILNGPEDVCVDRNGVLYTATRD--GWIKRLHKNGTWENWKLIGG 116
           PT +  Q+V    G      P  V VD  G +Y  +    G + +L    T        G
Sbjct: 6   PTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG 65

Query: 117 -DTLLGITTTQENEILVCDADKGLLKV--TEEGVTVLASHVNGSRINLADDLIAATDGSI 173
                G+       + V D +  ++ +       TVL        +N  + L   T G++
Sbjct: 66  LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDTQGAV 121

Query: 174 YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYL 232
           Y +         + G        + +++K        ++L    L   +GVA+      +
Sbjct: 122 YVA---------DRG--------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNV 163

Query: 233 VVCETFKFRCLKYWLKGESKEQTEIFVENLPGG----PDNIKLAPDGSFWIA 280
            V +T   R +K   +             LP      P  I +   G+ ++ 
Sbjct: 164 YVTDTDNNRVVKLEAESN-------NQVVLPFTDITAPWGIAVDEAGTVYVT 208

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 68  VTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLL----GI 122
           V + G  IL  P  V VD  G +     +   +    +NG   +    G    L    G+
Sbjct: 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK--FGCSKHLEFPNGV 169

Query: 123 TTTQENEILVCDADKGLLKV-TEEG 146
               + EI + D     +KV   EG
Sbjct: 170 VVNDKQEIFISDNRAHCVKVFNYEG 194

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 72  GEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK---NGTWENWKLIGGDTL---LGITTT 125
            +  L  P  V V RN      T      ++      G +   +  G   L    G+T  
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VRKFGATILQHPRGVTVD 129

Query: 126 QENEILVCDADKG-LLKVTEEGVTV 149
            +  I+V +     ++   + G  +
Sbjct: 130 NKGRIIVVECKVMRVIIFDQNGNVL 154

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Length = 326

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 43/265 (16%), Positives = 77/265 (29%), Gaps = 56/265 (21%)

Query: 41  SPISPDLLLLPPASSASLIPTTSDIQ------SVTRLGEGILNGPEDVCVDRNGVLYTAT 94
           +P+S    ++ P+   SL  T           +   LGEG            +G  +   
Sbjct: 15  APLSHSRPMMQPSEDKSL-ATVFPFAGRVLDETPMLLGEGP------TFDPASGTAW--- 64

Query: 95  RDGWI----KRLH----KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG 146
              W     + LH     +G      L     +        +   +  +D GL       
Sbjct: 65  ---WFNILERELHELHLASGRKTVHAL---PFMGSALAKISDSKQLIASDDGLFLRDTAT 118

Query: 147 -----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201
                   L S + G+R N   D      G+++              +        G + 
Sbjct: 119 GVLTLHAELESDLPGNRSN---DGRMHPSGALWIG-----------TMGRKAETGAGSIY 164

Query: 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL---KGESKEQTEIF 258
                  + + L   +   N +  S D       +T   R ++  L    G    + E+F
Sbjct: 165 HVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF 222

Query: 259 VE--NLPGGPDNIKLAPDGSFWIAI 281
           ++   + GG D      +G  W A 
Sbjct: 223 IDSTGIKGGMDGSVCDAEGHIWNAR 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.95
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.89
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.88
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.81
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.78
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.78
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.78
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.76
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.65
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.65
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.65
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.65
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.59
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.57
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.5
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.49
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.49
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.45
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.44
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.43
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.38
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.34
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.32
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.29
3ott_A	758	Two-component system sensor histidine kinase; beta	99.27
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.25
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.24
3ott_A	758	Two-component system sensor histidine kinase; beta	99.22
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.22
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.22
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.2
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.08
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.07
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.03
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.02
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.01
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.88
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.87
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.83
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.73
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.73
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.72
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.71
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.69
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.68
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.68
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.67
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.66
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.62
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.6
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.55
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.54
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.54
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.52
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.51
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.5
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.49
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.48
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.48
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.48
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.46
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.46
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.44
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.43
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.43
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.42
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.42
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.4
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.4
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.4
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.38
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.38
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.36
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.35
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.35
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.34
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.34
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.33
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.32
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.31
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.31
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.31
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.3
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.27
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.27
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.25
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.21
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.21
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.21
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.2
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.2
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.2
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.18
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.17
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.17
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.17
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.16
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.15
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.15
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.14
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.14
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.14
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.13
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.12
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.11
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.11
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.11
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.11
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.1
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.07
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.07
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.06
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.05
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.04
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.03
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.87
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.86
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.86
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.85
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.84
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.81
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.8
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.79
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.78
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.74
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.72
3jro_A	753	Fusion protein of protein transport protein SEC13	97.71
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.71
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.69
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.68
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.66
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.63
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.62
2pm7_B	297	Protein transport protein SEC13, protein transport	97.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.59
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.52
3jro_A	753	Fusion protein of protein transport protein SEC13	97.52
2pm7_B	297	Protein transport protein SEC13, protein transport	97.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.47
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.45
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.45
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.45
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.44
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.43
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.39
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.38
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.36
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.34
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.29
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.28
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.25
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.24
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.23
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.22
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.09
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.06
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.03
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.02
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.88
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.85
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.8
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.74
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.72
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.69
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.66
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.45
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.31
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.3
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.07
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.0
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.99
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.46
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	95.16
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	94.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	94.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.87
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	93.68
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	92.69
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.72
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	90.83
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	89.14
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	88.7
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	88.35
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	87.71
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.71
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	86.58
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	86.58
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	83.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	82.03
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	81.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.97

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.95  E-value=9.6e-27  Score=201.76  Aligned_cols=207  Identities=28%  Similarity=0.515  Sum_probs=163.4

Q ss_pred             CCcCCcceEEEccCCC-EEEEecCCeEEEEecCC-ceEEeee--------------------ecCcCccCeEEcC-CCcE
Q 022967           74 GILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWENWKL--------------------IGGDTLLGITTTQ-ENEI  130 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g-~~~~~~~--------------------~~~~p~~gl~~d~-~g~l  130 (289)
                      +.+..||++++|++|+ +|++..+++|++++.++ ++..+..                    ..+.|. ||++++ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            4478999999999998 88988899999999554 5655542                    124688 999996 8999


Q ss_pred             EEEeCCCceEEEeC-CC-eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          131 LVCDADKGLLKVTE-EG-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       131 ~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                      ||++..+++++++. ++ ++.+.....+.++..++++++++ +|+|||++....++.......+.+....++|+++|+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            99998788999994 45 66665544555667899999999 99999999764333333222333444568899999988


Q ss_pred             CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          208 NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       208 ~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++.+.+...+..|+|+++++|++.|||+++.+++|++|++++...+..+.+.. +++ |++|++|.+|+|||++..
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence            88877777788999999999999999999999999999998765555555553 556 999999999999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.2e-24  Score=184.42  Aligned_cols=212  Identities=20%  Similarity=0.261  Sum_probs=164.1

Q ss_pred             ceeEeccCCcCCcceEEEccCCC-EE-EEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGV-LY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT  143 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~-l~-v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~  143 (289)
                      .++++..+ ...+|+.+++++|+ || ++..+++|++++.+|+...+......+. +++++++|+||+++.. .+|++++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEEC
Confidence            45677777 57899999999887 55 6668899999998888777777677788 9999999999999876 5799999


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccc--ccceecCCCEEEEEeCCCCeEEEeeCCCCCc
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p  220 (289)
                      .+| ++.+.....+..++.+++++++++|++||+|..  ||......  ........+.|+++|+++++++.+. ++..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            668 777766555666778999999999999998754  22211000  0001123468999999878877776 77889


Q ss_pred             ceEEEecCCCEEEEEeCCC-----CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          221 NGVALSKDEDYLVVCETFK-----FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +|+++++|++.||++++..     ++|++|++++..+...+.+.....+.|++|++|.+|+||+++.+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~  258 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT  258 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC
Confidence            9999999999999999873     79999999865444445555444578999999999999999843

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.93  E-value=5.6e-24  Score=185.43  Aligned_cols=209  Identities=21%  Similarity=0.340  Sum_probs=155.8

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEe-------------cCCeEEEEecC---CceEEeeeec-------CcCccCeE
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTAT-------------RDGWIKRLHKN---GTWENWKLIG-------GDTLLGIT  123 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~-------------~~g~i~~~~~~---g~~~~~~~~~-------~~p~~gl~  123 (289)
                      ....++ +...+||+|+++++|.+|+++             ..|+|++++.+   ++.+.+....       .+|+ ||.
T Consensus        41 ~C~~i~-~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~  118 (355)
T 3sre_A           41 NCNLVK-GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GIS  118 (355)
T ss_dssp             CEEECT-TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEE
T ss_pred             CCEEeC-CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeE
Confidence            444553 435799999999999999886             68999999943   4555544322       4799 999


Q ss_pred             EcC--CC--cEEEEeCCC-----ceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccc-ccccc
Q 022967          124 TTQ--EN--EILVCDADK-----GLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW-GLDLL  192 (289)
Q Consensus       124 ~d~--~g--~l~v~~~~~-----~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~-~~~~~  192 (289)
                      +..  +|  +|||+++..     ++++++.++ ...+.....+.+++.+|+++++++|++|+++... +..... ..+..
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~  197 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMH  197 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHH
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhh
Confidence            854  45  599998763     388888655 5555566677788999999999999999998641 111100 01122


Q ss_pred             eecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCceee
Q 022967          193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       193 ~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~  271 (289)
                      +....++||++++.  +.+.+.+++..|||++++||+++|||+|+..++|++|+++++ ++...+.+  ..++.|||+++
T Consensus       198 ~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~v  273 (355)
T 3sre_A          198 LGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISV  273 (355)
T ss_dssp             TTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEE
T ss_pred             ccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEE
Confidence            23456899999984  677788899999999999999999999999999999999743 44444555  45689999999


Q ss_pred             CC-CCCEEEEEe
Q 022967          272 AP-DGSFWIAIL  282 (289)
Q Consensus       272 d~-~G~lwv~~~  282 (289)
                      |. +|++|+++.
T Consensus       274 D~e~G~lwva~~  285 (355)
T 3sre_A          274 DPVTGDLWVGCH  285 (355)
T ss_dssp             CTTTCCEEEEEE
T ss_pred             eCCCCcEEEEec
Confidence            99 599999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.91  E-value=2.2e-22  Score=171.83  Aligned_cols=211  Identities=18%  Similarity=0.270  Sum_probs=157.6

Q ss_pred             eeEeccCCcCCcceEEEccCCC-EE-EEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV-LY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-  143 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~-l~-v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-  143 (289)
                      ++.+..+ ...||+++++++|+ || ++..+++|++++.++....+......|. +++++++|+||+++.. .+|++++ 
T Consensus        20 ~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEcC
Confidence            3455555 67899999999998 55 6668899999996555666665566788 9999999999999875 6799999 


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccc--ccceecCCCEEEEEeCCCCeEEEeeCCCCCc
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p  220 (289)
                      .+| ++.+.....+.....+++++++++|++|+++..  ++......  ........++|++++++ ++...+......|
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence            578 766654444455667899999999999998753  11100000  00011124689999998 7777777888899


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecC-CCC-cceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKG-ESK-EQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ++++++||++.+ ++++..++|++|++++ ..+ .....+ ....+.|+++++|++|++||++ .+++
T Consensus       175 ~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v  239 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGV  239 (296)
T ss_dssp             EEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEE
T ss_pred             ccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeE
Confidence            999999999977 9999999999999862 233 333444 4445789999999999999999 5554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.89  E-value=9.9e-22  Score=168.28  Aligned_cols=200  Identities=13%  Similarity=0.140  Sum_probs=147.8

Q ss_pred             cCCcceEEEcc-CCCEEEE-ecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEE
Q 022967           76 LNGPEDVCVDR-NGVLYTA-TRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~-~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~  150 (289)
                      ..-+|+.++++ ++.||+. ..+++|++++.+ ++...+ .....+. +++++++|+||++. ..+|++++ .+| ++.+
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVS-SVALRQSGGYVATI-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceE-EEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence            56789999998 6778854 478999999954 444433 3346677 99999999999998 47899999 667 7766


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                      .....+.+...+++++++++|++|+++......      ........+.|++++++ ++...+...+..|+|++++||++
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSC
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCC
Confidence            554334445678999999999999987531100      00011234789999987 56666667778899999999999


Q ss_pred             EEEEEeCCCCeEEEEEec--CCCCcceeeeec--cCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          231 YLVVCETFKFRCLKYWLK--GESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .||++++..++|++|+++  +..+...+.+..  ...+.|+++++|++|+|||+++.++
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence            999999999999999985  223333344432  2236799999999999999998653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.88  E-value=2.3e-20  Score=160.49  Aligned_cols=189  Identities=17%  Similarity=0.255  Sum_probs=144.8

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-Cc--eEEEe
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KG--LLKVT  143 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~--i~~~~  143 (289)
                      +..++.+  ..||++++|++|+||+++ .+++|++++.+|+...+....+.|. +|+++++|+|||++.. ++  +++++
T Consensus        25 ~~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           25 ITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             eEeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEc
Confidence            3444443  679999999999999877 7799999998887766655567899 9999999999999854 23  88988


Q ss_pred             -CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--------
Q 022967          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--------  213 (289)
Q Consensus       144 -~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--------  213 (289)
                       ++| ++.+... .  ....++++++.+++.+|+++..                 .+.||++|+++++.+.+        
T Consensus       102 ~~~g~~~~~~~~-~--~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A          102 KSDGTVETLLTL-P--DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             CTTSCEEEEEEC-T--TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             CCCCeEEEEEeC-C--CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCcccc
Confidence             778 7665543 2  2345778888888889999853                 47899999876543322        


Q ss_pred             ---eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC-CCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          214 ---LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       214 ---~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                         ...+..|+|+  ++|+++||++++.+++|++|++++ .++...+.+.. . ..|++|++|.+|++||+...
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~  231 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHI  231 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBT
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCC
Confidence               1345688998  888999999999999999999975 33444444442 2 47999999999999999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.87  E-value=1.8e-20  Score=160.53  Aligned_cols=211  Identities=22%  Similarity=0.367  Sum_probs=150.6

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEE--------ecCCeEEEEe-cCCceEEeee-----ecCcCccCeEEcCC-CcEEE
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTA--------TRDGWIKRLH-KNGTWENWKL-----IGGDTLLGITTTQE-NEILV  132 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~--------~~~g~i~~~~-~~g~~~~~~~-----~~~~p~~gl~~d~~-g~l~v  132 (289)
                      .+.+..+ +..|++++++++|+||++        ..+++|++++ .+|+...+..     ....+. +++++++ |+||+
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             Hhhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            3445555 789999999999999987        4678999999 5777766543     335688 9999999 99999


Q ss_pred             EeCCCceEEEeCCC-eEEE-EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE
Q 022967          133 CDADKGLLKVTEEG-VTVL-ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (289)
Q Consensus       133 ~~~~~~i~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  210 (289)
                      ++...+|++++.+| ++.+ .....+.....+++++++++|++|+++........++  ........++|++++++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCE
Confidence            99767899999448 6554 3322233445789999999999999985310000000  00011223689999988 666


Q ss_pred             EEeeCCCCCcceEEEe----cCCCEEEEEeCCCCeEEEEEecC-CCCcceeeeec--cCC-CCCCceeeCCCCCEEEEEe
Q 022967          211 SILLDSLFFANGVALS----KDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVE--NLP-GGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       211 ~~~~~~~~~p~gl~~~----~d~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~--~~~-~~p~~i~~d~~G~lwv~~~  282 (289)
                      ..+......|++++++    ++++.+|+++...++|++|+.++ ..+...+.+..  ... +.|+++++|++|++|+++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            6665666789999999    99988999999889999999862 22222223221  111 5689999999999999986


Q ss_pred             C
Q 022967          283 Q  283 (289)
Q Consensus       283 ~  283 (289)
                      .
T Consensus       245 ~  245 (314)
T 1pjx_A          245 G  245 (314)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=2.6e-18  Score=150.54  Aligned_cols=184  Identities=13%  Similarity=0.145  Sum_probs=139.9

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEee-eecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC--e
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG--V  147 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g--~  147 (289)
                      +..|.++++|+ ++.||+++ .+++|++++.+|. .+.+. .....|. ||++|. +|+||+++.. +.|.+++.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            67899999996 78899666 7789999997664 33332 3346788 999995 6789999976 5688888666  4


Q ss_pred             EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEE
Q 022967          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~  225 (289)
                      +.+..    ..+..|++|+++| +|.||+++..                ..++|+++++++...+.+. .++..|+||++
T Consensus       151 ~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~  210 (349)
T 3v64_C          151 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  210 (349)
T ss_dssp             EEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEE
T ss_pred             EEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEE
Confidence            44432    2346799999998 6789999864                1378999999866555543 56889999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +++++.|||+|...++|++++++|..   ...+.......|++|+++ +|++|++.+..
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~  265 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHT  265 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence            99999999999999999999998742   223332223689999996 47899998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.82  E-value=2.1e-18  Score=149.61  Aligned_cols=203  Identities=17%  Similarity=0.213  Sum_probs=144.9

Q ss_pred             eeEeccCCcCCcceEEEccC-CCEE-EEecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-
Q 022967           68 VTRLGEGILNGPEDVCVDRN-GVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-  143 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~-g~l~-v~~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-  143 (289)
                      ++.+.......+|+++++++ +.+| ++..+++|++++.+ ++...+. ....+. +++++++|++|++. ..+|++++ 
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~-~i~~~~dg~l~v~~-~~gl~~~d~  116 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGS-ALAKISDSKQLIAS-DDGLFLRDT  116 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEE-EEEEEETTEEEEEE-TTEEEEEET
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcce-EEEEeCCCeEEEEE-CCCEEEEEC
Confidence            44555544566899999985 6777 55577899999954 4444443 234566 89999999999998 47799999 


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      .+| ++.+.....+.....+++++++++|++|+++....           +....++|++++ + ++...+......+++
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~  183 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNS  183 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCC
Confidence            667 66654432222335688999999999999874210           011346899999 4 777666556667899


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEec--CC-CCcceeeeec--cCCCCCCceeeCCCCCEEEEEeC-ccc
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLK--GE-SKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQ-VFI  286 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~--~~-~~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~-g~i  286 (289)
                      +++++|++.||++++..++|++|+.+  +. .+...+.+..  ...+.|+++++|.+|++|+++.. +++
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v  253 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  253 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence            99999999999999988999999986  33 3333333321  22357999999999999999975 444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.81  E-value=1.6e-18  Score=155.98  Aligned_cols=186  Identities=15%  Similarity=0.135  Sum_probs=140.1

Q ss_pred             CcCCcceEEEccC---CCEEEEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcEEEEeCC-----CceEEEeCC
Q 022967           75 ILNGPEDVCVDRN---GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTEE  145 (289)
Q Consensus        75 ~~~~p~~l~~d~~---g~l~v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-----~~i~~~~~~  145 (289)
                      .+..|++|++|++   |+||+++..++|++++. +|.+..+......|. +|+++++|+|||++..     .+++.++.+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            4788999999984   99998886589999995 788877766667799 9999999999999863     247777743


Q ss_pred             C-e---EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEee--CCC
Q 022967          146 G-V---TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILL--DSL  217 (289)
Q Consensus       146 g-~---~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~--~~~  217 (289)
                      + .   ..+.      .+..|+++++++ +|+|||++..                 .++|++++++++.. +.+.  ...
T Consensus       216 ~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          216 SGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             GTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCC
T ss_pred             CCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCC
Confidence            3 2   1221      356899999999 8999999864                 47899999986765 3332  223


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeecc--------------CCCCCCceee---------C
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVEN--------------LPGGPDNIKL---------A  272 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--------------~~~~p~~i~~---------d  272 (289)
                      ..+.++++++++++|||++..+++|++++.++.  .+.....+...              .-..|.++++         |
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            456689999999999999999999999998742  22211222211              1135888999         9


Q ss_pred             CCCCEEEEEeCc
Q 022967          273 PDGSFWIAILQV  284 (289)
Q Consensus       273 ~~G~lwv~~~~g  284 (289)
                      .+|+|||+....
T Consensus       353 ~~g~lyvaD~~n  364 (433)
T 4hw6_A          353 DEYDFYFCDRDS  364 (433)
T ss_dssp             CCEEEEEEETTT
T ss_pred             CCCcEEEEECCC
Confidence            999999998753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.81  E-value=3.2e-18  Score=151.94  Aligned_cols=184  Identities=13%  Similarity=0.134  Sum_probs=138.9

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEee-eecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC--e
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG--V  147 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g--~  147 (289)
                      +..|.++++|+ ++.||+++ .+++|++++.+|. .+.+. .....|. ||++|. .++||+++.. ++|.+++.+|  .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            67899999996 78899666 7789999997765 33333 3345788 999995 6789999976 4688888666  4


Q ss_pred             EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEE
Q 022967          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVAL  225 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~  225 (289)
                      +.+..    ..+..|++|+++| +|.||+++..                ..++|+++++++...+.+ ..++..|+||++
T Consensus       194 ~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          194 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             EEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence            44432    2346799999997 5789999854                136899999986555544 357889999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +++++.|||+|+..++|++++++|..   ...+.......|++|++++ +++|++.+..
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~~-~~ly~td~~~  308 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVFE-DSLYWTDWHT  308 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEET-TEEEEEETTT
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEEC-CEEEEeeCCC
Confidence            99899999999999999999988742   2333332235899999965 6888887653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=4e-18  Score=147.42  Aligned_cols=194  Identities=21%  Similarity=0.305  Sum_probs=140.8

Q ss_pred             cCCcceEEEccCCCEEEE-ecCCeEEEEec-CCceEEee-eecCcCccCeEEcCCCcEEEEeCCC-----ceEEEe-CCC
Q 022967           76 LNGPEDVCVDRNGVLYTA-TRDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILVCDADK-----GLLKVT-EEG  146 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~-~~~g~i~~~~~-~g~~~~~~-~~~~~p~~gl~~d~~g~l~v~~~~~-----~i~~~~-~~g  146 (289)
                      ...|++++++++|+||+. ..+++|++++. +++...+. .....+. +++++++|++|+++...     +|++++ ..+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            567999999999999964 57789999994 56665544 3345677 99999999999998654     799999 445


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~  225 (289)
                       .+.+....  .....+++++++++|++|+++....           .....+.|+++++++++...+......++++++
T Consensus       123 ~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          123 NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             EEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             55333211  1234688999999999999875310           011246899999987777666555667899999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecC--CCCcce--eeeec-cCCCCCCceeeCCCCCEEEEEeC
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKG--ESKEQT--EIFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~--~~~~~-~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++|++.||+++...++|++|+.+.  ......  ..+.. .....|+++++|++|++|+++..
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~  252 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG  252 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC
Confidence            999999999998889999999853  222111  11111 11137899999999999999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=3.4e-18  Score=144.82  Aligned_cols=185  Identities=14%  Similarity=0.207  Sum_probs=137.9

Q ss_pred             CCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEE-eeee------cCcCccCeEE-cCCCcEEEEeC--CCceEEE
Q 022967           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWEN-WKLI------GGDTLLGITT-TQENEILVCDA--DKGLLKV  142 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~-~~~~------~~~p~~gl~~-d~~g~l~v~~~--~~~i~~~  142 (289)
                      +.+..|.+++++++|++|+++ .+++|.+++.+|+... +...      ...|. ++++ +++|+||+++.  ..+|+++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            447889999999999999875 6789999997776433 2211      13577 9999 58899999985  4678899


Q ss_pred             eCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCC
Q 022967          143 TEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (289)
Q Consensus       143 ~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~  218 (289)
                      +.+|  +..+.    ......+.+|+++++|++|+++..                 .++|+++++++.....+.  ..+.
T Consensus       106 d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~  164 (286)
T 1q7f_A          106 NQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLE  164 (286)
T ss_dssp             CTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCS
T ss_pred             CCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccC
Confidence            8666  33331    123457889999999999999753                 368999998755554443  3466


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCCEEEEEeCc
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      .|++++++++++ +|+++...++|++|+.++..+   ..+.. .....|.+|++|.+|++||++...
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~---~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQYL---RQIGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEETTCCEE---EEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             CcEEEEECCCCC-EEEEECCCCEEEEEcCCCCEE---EEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            899999999987 999999889999999765422   12211 112468999999999999999653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.81  E-value=2.1e-18  Score=151.31  Aligned_cols=211  Identities=15%  Similarity=0.189  Sum_probs=143.3

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeee------ecCcCccCeEEcCC----CcEEEEeCC
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~l~v~~~~  136 (289)
                      .++.+..+ +..|++|+++++|+||+++..|+|++++.+|+ +.+..      ....++ ||+++++    |.|||+...
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEec
Confidence            45666666 79999999999999999998899999987777 44432      235688 9999986    899999753


Q ss_pred             --------CceEEEe-CCC------eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEE
Q 022967          137 --------KGLLKVT-EEG------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (289)
Q Consensus       137 --------~~i~~~~-~~g------~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~  201 (289)
                              .+|++++ .++      .+++....+....+.+++|+++|||+|||+.+..  +......+  .....++|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~--~~~~~~~d--~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDA--ADPRLAQD--LSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCT--TCGGGGTC--TTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCC--CCCccccC--CCCCCeEEE
Confidence                    5788888 322      2333333333445678999999999999997642  11111111  112357999


Q ss_pred             EEeCCCC--------eEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe--cCCCCcc------------eeeee
Q 022967          202 KYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL--KGESKEQ------------TEIFV  259 (289)
Q Consensus       202 ~~~~~~~--------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~--~~~~~~~------------~~~~~  259 (289)
                      |+++++.        ..++++.++++|+|++++++.+.||++|.+.++...++.  .+...+.            .....
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  252 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI  252 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence            9999854        356788899999999999955559999998765333332  2221110            00111


Q ss_pred             c--cCCCCCCceee-------CCCCCEEEEEeCc
Q 022967          260 E--NLPGGPDNIKL-------APDGSFWIAILQV  284 (289)
Q Consensus       260 ~--~~~~~p~~i~~-------d~~G~lwv~~~~g  284 (289)
                      .  .....|.++++       +.+|++|++...+
T Consensus       253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~  286 (354)
T 3a9g_A          253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG  286 (354)
T ss_dssp             ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT
T ss_pred             ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC
Confidence            0  11245888998       4678999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.81  E-value=7e-18  Score=145.76  Aligned_cols=184  Identities=11%  Similarity=0.090  Sum_probs=136.7

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCC----c-eEEee-eecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG----T-WENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g----~-~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~  145 (289)
                      +..|+++++|+ ++.||+++ .+++|++++.+|    . .+.+. .....|. ||++|. +++||+++.. +.|.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            68899999997 67899766 678999999665    2 23322 2345788 999995 6789999876 568888866


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~  221 (289)
                      |  .+.+...    .+..|++|+++| +|.||+++..                ..++|+++++++...+.+. ..+..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A          108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            6  4444431    245789999998 6789999853                1368999999865555443 4688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCceeeCCCCCEEEEEeCc
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ||+++++++.|||+|+..++|++++.+|..   .+.+...  ....|.+|++|. |++|++.+..
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~  228 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  228 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECCC
Confidence            999999999999999999999999998742   2333322  235799999985 7899888653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.81  E-value=2.9e-18  Score=150.32  Aligned_cols=210  Identities=15%  Similarity=0.144  Sum_probs=141.4

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEecCCceEEeee------ecCcCccCeEEcCC----CcEEEEeCC
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~l~v~~~~  136 (289)
                      .++.+..+ +..|++|+++++|+||+++..|+|++++ +|+.+.+..      ....|+ ||+++++    +.|||++..
T Consensus        22 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CEEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEec
Confidence            45666666 7899999999999999999889999998 776554332      235688 9999987    789999753


Q ss_pred             ------CceEEEe-CCC-e---EEEEeccC--CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEE
Q 022967          137 ------KGLLKVT-EEG-V---TVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (289)
Q Consensus       137 ------~~i~~~~-~~g-~---~~~~~~~~--~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~  203 (289)
                            .+|++++ .++ +   +.+....+  ....+.+.+|++++||.|||+++..  +.....++  .....++|+|+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~--~~~~~~~d--~~~~~g~I~ri  174 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEV--YERELAQD--LASLGGKILRL  174 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCT--TCGGGGGC--TTCSSSEEEEE
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCC--CCCccccC--CCCCceEEEEE
Confidence                  5689998 433 2   23333333  3345678999999999999997642  11111111  11235799999


Q ss_pred             eCCC-------------CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe--------EEEEEecCCCCcc--------
Q 022967          204 DPSL-------------NETSILLDSLFFANGVALSKDEDYLVVCETFKFR--------CLKYWLKGESKEQ--------  254 (289)
Q Consensus       204 ~~~~-------------~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~--------i~~~~~~~~~~~~--------  254 (289)
                      ++++             ...++++.++++|+|++++++++.||++|.+.++        |.++. .+...+.        
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~-~G~nyGwp~~~g~~~  253 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV-PGGNYGWPRVVGRGN  253 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC-TTCBCCTTTCCSCCC
T ss_pred             cCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec-cCCcCCCCcccCCCC
Confidence            9985             2456677889999999999955559999998776        44443 2221110        


Q ss_pred             ----eeeeec-cCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          255 ----TEIFVE-NLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       255 ----~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                          ...... .....|.++++ .+|++|++...++
T Consensus       254 ~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~  288 (352)
T 2ism_A          254 DPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQ  288 (352)
T ss_dssp             CTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTT
T ss_pred             CCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCC
Confidence                001110 11135888998 4689999987543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=1e-17  Score=140.34  Aligned_cols=184  Identities=14%  Similarity=0.234  Sum_probs=135.8

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEecCCceEE-eee-ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEEEE
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN-WKL-IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVLA  151 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~-~~~-~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~~~  151 (289)
                      +..|.+|+++++|+||+++.+++|++++.++.... +.. ....|. +++++++|++|+++.. .+|++++... .....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             cCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            56899999999999998887889999997665332 222 225688 9999999999999865 5688887333 22221


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~  230 (289)
                      .   ...+..+.+|+++++|++|+++..                 .++|++++++++..... ...+..|.+++++++|.
T Consensus       145 ~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~  204 (270)
T 1rwi_B          145 P---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT  204 (270)
T ss_dssp             C---CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred             c---cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCCC
Confidence            1   122457899999999999999753                 36899999986655443 23457899999999985


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                       +|+++...++|++|+.++....   .........|.++++|.+|++|++....
T Consensus       205 -l~v~~~~~~~v~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          205 -VYVTEHNTNQVVKLLAGSTTST---VLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             -EEEEETTTSCEEEECTTCSCCE---ECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             -EEEEECCCCcEEEEcCCCCcce---eeccCCCCCceeEEECCCCCEEEEECCC
Confidence             9999998899999987764221   1111111468999999999999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=7.6e-18  Score=146.13  Aligned_cols=156  Identities=14%  Similarity=0.134  Sum_probs=116.5

Q ss_pred             cCCcceEEEccCCCEEEEecCC-------------------------eEEEEec-CCceEEeee--ecCcCccCeEEcCC
Q 022967           76 LNGPEDVCVDRNGVLYTATRDG-------------------------WIKRLHK-NGTWENWKL--IGGDTLLGITTTQE  127 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g-------------------------~i~~~~~-~g~~~~~~~--~~~~p~~gl~~d~~  127 (289)
                      +..|.+|++|++|++|+++..+                         .|++++. +|++.....  ....|. +++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECCC
Confidence            6789999999999999877443                         6999985 577654322  124688 9999999


Q ss_pred             CcEEEEeCC-CceEEEeCCC-e---EEEEec----cCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCC
Q 022967          128 NEILVCDAD-KGLLKVTEEG-V---TVLASH----VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (289)
Q Consensus       128 g~l~v~~~~-~~i~~~~~~g-~---~~~~~~----~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~  197 (289)
                      |+||+++.. +.|++++.+| .   ..+...    .....+..|.+|++++ +|+|||++..                ..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~~  165 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------CN  165 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------SC
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------CC
Confidence            999999976 5688898655 2   222111    0123456799999999 8999999851                13


Q ss_pred             CEEEEEeCCCCeEEEee----------CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          198 GKLLKYDPSLNETSILL----------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~----------~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ++|.++++++.....+.          ..+..|.+++++++++.|||++..+++|.+|+.+
T Consensus       166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            68999998754444432          1245699999999977799999999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.80  E-value=1e-17  Score=140.90  Aligned_cols=184  Identities=15%  Similarity=0.112  Sum_probs=137.1

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEeee-ecCcCccCeEEcCC-CcEEEEeCC-CceEEEeCCC--e
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQE-NEILVCDAD-KGLLKVTEEG--V  147 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~~-~~~~p~~gl~~d~~-g~l~v~~~~-~~i~~~~~~g--~  147 (289)
                      ..+|+++++|+ ++.||+++ .+++|++++.+|. ...+.. ....|. +|++|++ ++||+++.. +.|.+++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            46799999998 67899776 6789999997664 333332 235788 9999974 689999976 5688888656  4


Q ss_pred             EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEE
Q 022967          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~  225 (289)
                      +.+..    ..+..|+++++++ +|+||+++...               ..+.|++++.++...+.+. ..+..|+++++
T Consensus       114 ~~~~~----~~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          114 RVLFD----TGLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEEC----SSCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEE----CCCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            44432    1245789999999 57899998531               1368999998865544443 56788999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +++++.|||++...++|++++.++..   ...+... ...|.+|++| ++++|++....
T Consensus       175 d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~-~~~P~gi~~d-~~~lyva~~~~  228 (267)
T 1npe_A          175 DAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEG-LQYPFAVTSY-GKNLYYTDWKT  228 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEE---EEEEEEC-CCSEEEEEEE-TTEEEEEETTT
T ss_pred             cCCCCEEEEEECCCCEEEEEecCCCc---eEEEecC-CCCceEEEEe-CCEEEEEECCC
Confidence            99999999999999999999987532   2233332 3579999998 58999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.79  E-value=8e-18  Score=145.48  Aligned_cols=183  Identities=16%  Similarity=0.136  Sum_probs=137.3

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCce---EEeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC--
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~---~~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g--  146 (289)
                      +..|.++++|+ ++.||.++ .+++|++++.+|..   ..+......|. |+++|. +|+||+++.. ++|.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            46688889987 68898665 77899999976642   23334456788 999995 7789999976 5688888666  


Q ss_pred             eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~  224 (289)
                      .+.+..    ..+..|++|+++| +|.||+++..                ..++|+++++++...+.+ ..++..|+||+
T Consensus       113 ~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A          113 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             CEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            454432    2346799999998 5799999843                236899999986554444 46788999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++++++.|||+|+..++|++++++|..   .+.+.......|+++++|.+ .+|++.+.
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~~~-~lywtd~~  227 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWS  227 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEETT-EEEEEETT
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEeCC-EEEEEecC
Confidence            999999999999999999999998742   33444323368999999965 56666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=1.4e-17  Score=139.48  Aligned_cols=180  Identities=18%  Similarity=0.290  Sum_probs=131.0

Q ss_pred             CcceEEEccCCCEEE-Ee-cCCeEEEEecCCce-EEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLYT-AT-RDGWIKRLHKNGTW-ENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v-~~-~~g~i~~~~~~g~~-~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~  151 (289)
                      .|+++++|++|+||+ ++ .+++|.+++.++.. ..+.. ....|. +|+++++|+||+++..++|++++.++  ...+.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence            899999999999998 85 67889999854432 22222 235688 99999999999998756799999555  33221


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~  230 (289)
                          ...+..+.+|+++++|++|+++..                 .+.|++++..+...... ...+..|++++++++++
T Consensus       104 ----~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          104 ----FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             ----CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             ----cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence                122356889999999999999753                 36899997654433322 23456899999999998


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                       +|+++...++|++|+.++.....  .....+ ..|.+|++|.+|++|+++..
T Consensus       163 -l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~-~~p~~i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          163 -VYVTDTDNNRVVKLEAESNNQVV--LPFTDI-TAPWGIAVDEAGTVYVTEHN  211 (270)
T ss_dssp             -EEEEEGGGTEEEEECTTTCCEEE--CCCSSC-CSEEEEEECTTCCEEEEETT
T ss_pred             -EEEEECCCCEEEEEecCCCceEe--ecccCC-CCceEEEECCCCCEEEEECC
Confidence             99999888999999977543211  111111 56899999999999999864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.79  E-value=4.2e-17  Score=141.50  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=119.6

Q ss_pred             cceeEeccCCcCCcceEEEccCCCEEEEec-CCeEEEEec-CCceEEee-------eecCcCccCeEEcC----CCcEEE
Q 022967           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHK-NGTWENWK-------LIGGDTLLGITTTQ----ENEILV  132 (289)
Q Consensus        66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~-~g~~~~~~-------~~~~~p~~gl~~d~----~g~l~v  132 (289)
                      ..++.+.++ +..|++|+++++|+||++.. .|+|++++. +|+.+.+.       ...+.++ ||++++    ++.||+
T Consensus        22 ~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~lYv   99 (347)
T 3das_A           22 KVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMVYA   99 (347)
T ss_dssp             EEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEEEE
T ss_pred             ceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEEEE
Confidence            356777777 89999999999999999997 899999984 46654432       2235678 999997    488999


Q ss_pred             EeC---CCceEEEe-CC-----C----eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCE
Q 022967          133 CDA---DKGLLKVT-EE-----G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (289)
Q Consensus       133 ~~~---~~~i~~~~-~~-----g----~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~  199 (289)
                      +..   .++|.|+. ..     .    .+.+....+....|....|++++||.|||+.+..  +.....++.  ....|+
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~--~~~~~~qd~--~~~~G~  175 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES--GDTGLSQDR--KSLGGK  175 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT--TCGGGTTCT--TCSTTC
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC--CCCccccCC--CCCCCE
Confidence            742   35788886 32     1    3444444444456778899999999999997642  111111111  123588


Q ss_pred             EEEEeCCCC--------eEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          200 LLKYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       200 i~~~~~~~~--------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      |+|+++++.        ..++++.++++|+|++|+++++ ||++|.+.
T Consensus       176 IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~  222 (347)
T 3das_A          176 ILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQ  222 (347)
T ss_dssp             EEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCS
T ss_pred             EEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCC
Confidence            999999865        3467888999999999999766 99998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=1.9e-17  Score=140.27  Aligned_cols=185  Identities=13%  Similarity=0.188  Sum_probs=136.0

Q ss_pred             cCCcceEEE-ccCCCEEEEec--CCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC--e
Q 022967           76 LNGPEDVCV-DRNGVLYTATR--DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--V  147 (289)
Q Consensus        76 ~~~p~~l~~-d~~g~l~v~~~--~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g--~  147 (289)
                      +..|.++++ +++|+||+++.  +++|.+++.+|+......  ....|. +++++++|++|+++.. ++|++++.+|  +
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~  154 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNVL  154 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCCEE
Confidence            467999999 57999998873  789999998786543222  224678 9999999999999865 5689999666  4


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEE
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVAL  225 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~  225 (289)
                      ..+...   ..+..|++|+++++|++|+++..                 .++|+++++++.....+...  +..|.++++
T Consensus       155 ~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~  214 (286)
T 1q7f_A          155 HKFGCS---KHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGI  214 (286)
T ss_dssp             EEEECT---TTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEE
T ss_pred             EEeCCC---CccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEEccCCccCCCcEEEE
Confidence            333211   23457899999999999999753                 36899999976555544322  468999999


Q ss_pred             ecCCCEEEEEeCCCC-eEEEEEecCCCCcceeeeeccC-CCCCCceeeCCCCCEEEEEeCcc
Q 022967          226 SKDEDYLVVCETFKF-RCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      +++|+ +|+++..++ +|.+|+.++..+.   .+.... ...|.+++++++|++||+..++.
T Consensus       215 d~~G~-l~v~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~  272 (286)
T 1q7f_A          215 NSNGE-ILIADNHNNFNLTIFTQDGQLIS---ALESKVKHAQCFDVALMDDGSVVLASKDYR  272 (286)
T ss_dssp             CTTCC-EEEEECSSSCEEEEECTTSCEEE---EEEESSCCSCEEEEEEETTTEEEEEETTTE
T ss_pred             CCCCC-EEEEeCCCCEEEEEECCCCCEEE---EEcccCCCCcceeEEECCCCcEEEECCCCe
Confidence            99987 999998876 9999986654222   222121 13578999999999999975443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.78  E-value=4.1e-17  Score=153.06  Aligned_cols=185  Identities=14%  Similarity=0.100  Sum_probs=144.9

Q ss_pred             CCcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEeee-ecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC-
Q 022967           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG-  146 (289)
Q Consensus        74 ~~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~~-~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g-  146 (289)
                      ..+..|.+|++|+ ++.||+++ .+++|++++.+|. .+.+.. ....|. |||+|. .++||+++.. ++|.+++.+| 
T Consensus        34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            3467899999998 78899666 7799999997774 333333 335799 999995 5689999976 4688888666 


Q ss_pred             -eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~  224 (289)
                       .+.+..    ..+..|++|+++| +|.|||+|..                ..++|+++++++...+.+..++..|+||+
T Consensus       113 ~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~Gla  172 (628)
T 4a0p_A          113 HRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLT  172 (628)
T ss_dssp             TCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEE
T ss_pred             cEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEE
Confidence             455542    2356799999998 7899999843                14689999999877777778899999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ++++++.|||+|...++|++++++|...   +.+...+ ..|.+|++++ +++|++.+..
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l-~~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDL-PHPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECC-SCEEEEEEET-TEEEEEETTT
T ss_pred             EccccCEEEEEECCCCEEEEEcCCCCce---EEeeccC-CCceEEEEEC-CEEEEecCCC
Confidence            9999999999999999999999987533   3444333 5799999997 7899998743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.78  E-value=7.8e-17  Score=136.54  Aligned_cols=184  Identities=17%  Similarity=0.230  Sum_probs=139.1

Q ss_pred             cCCcceEEEccCCCEEEEec-CCeEEEEecCCceEEeeee--cCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEEE
Q 022967           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~~  150 (289)
                      ...|.++++|++|++|+++. +++|++++.+|+...+...  ...|. +++++++|+||+++.. .+|++++.+| +..+
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~  181 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPA-FITLGSDNALWFTENQNNSIGRITNTGKLEEY  181 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCce-eEEECCCCCEEEEecCCCeEEEECCCCcEEEe
Confidence            36799999999999998874 6899999977877655322  35678 9999999999999864 5799999766 5544


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d  228 (289)
                      ...   .....+.+++++++|+||+++..                 .+.|++++++ ++...+.  .....|.+++++++
T Consensus       182 ~~~---~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          182 PLP---TNAAAPVGITSGNDGALWFVEIM-----------------GNKIGRITTT-GEISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             ECS---STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECST
T ss_pred             eCC---CCCCCcceEEECCCCCEEEEccC-----------------CCEEEEEcCC-CcEEEEECCCCCCCceEEEECCC
Confidence            221   22356889999999999999753                 3679999985 5554442  34677999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      |+ ||+++...++|.+|+.++. .   ..+ .......|.++++|.+|++|+++.+ ++.
T Consensus       241 g~-l~v~~~~~~~i~~~~~~g~-~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~  294 (300)
T 2qc5_A          241 SE-IWFTEWGANQIGRITNDNT-I---QEYQLQTENAEPHGITFGKDGSVWFALKC-KIG  294 (300)
T ss_dssp             TC-EEEEETTTTEEEEECTTSC-E---EEEECCSTTCCCCCEEECTTSCEEEECSS-EEE
T ss_pred             CC-EEEeccCCCeEEEECCCCc-E---EEEECCccCCccceeEeCCCCCEEEEccC-ceE
Confidence            88 9999988899999987432 2   122 1112256899999999999999974 653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.78  E-value=8.9e-17  Score=143.70  Aligned_cols=183  Identities=10%  Similarity=0.095  Sum_probs=132.6

Q ss_pred             CcCCcceEEEccCCCEEEEe-cCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCc-EEEEeCCC--ceEEEe-CCC-e
Q 022967           75 ILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK--GLLKVT-EEG-V  147 (289)
Q Consensus        75 ~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~--~i~~~~-~~g-~  147 (289)
                      .+..|.+|++|++|+||+++ .+++|++++.+ +....+......+.  ++++++|+ ||+++...  .+++++ ..+ .
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            37889999999999999776 56899999965 56666554433343  88998885 78887643  799999 444 3


Q ss_pred             -EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eCC--CCC
Q 022967          148 -TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDS--LFF  219 (289)
Q Consensus       148 -~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~--~~~  219 (289)
                       ..+. .........++++++++ +|.||+++.                  .+.|+++|++++....+    ..+  ...
T Consensus       207 ~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          207 PTRIG-QLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEE-ECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eEEee-eccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             3331 11111346789999999 789999763                  36899999987766555    222  223


Q ss_pred             cc-eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--------------CCCCCceeeCCCCCEEEEEe
Q 022967          220 AN-GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL--------------PGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       220 p~-gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |. +++++|+++.||+++..+++|++|+.++.    ...+....              -..|.+|++|++|+|||+..
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            45 99999987789999999999999987764    11111110              14699999999999999987

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.78  E-value=9.4e-17  Score=136.04  Aligned_cols=182  Identities=14%  Similarity=0.209  Sum_probs=138.3

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeee--cCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEEE
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~~  150 (289)
                      ...|++|++|++|+||+++ .+++|.+++.++++..+...  ...|. +++++++|++|+++.. ++|++++.+| ...+
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~   97 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEY   97 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence            5789999999999999887 57899999966776654332  24678 9999999999999864 5699999558 6544


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d  228 (289)
                      ....   ....+.+++++++|++|+++..                 .+.|++++++ ++...+.  .....|++++++++
T Consensus        98 ~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            3211   1256889999999999999753                 3689999998 6655442  24668999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ++ +|+++...++|++|+.++. ..   .+. ......|.++++|.+|++|+++...
T Consensus       157 g~-l~v~~~~~~~i~~~~~~g~-~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  208 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITNTGK-LE---EYPLPTNAAAPVGITSGNDGALWFVEIMG  208 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTCC-EE---EEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred             CC-EEEEecCCCeEEEECCCCc-EE---EeeCCCCCCCcceEEECCCCCEEEEccCC
Confidence            98 9999988899999987432 21   221 1222468999999999999998654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=2.3e-17  Score=148.35  Aligned_cols=186  Identities=13%  Similarity=0.127  Sum_probs=137.9

Q ss_pred             CcCCcceEEEcc--CCCEEEEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcCCCc-EEEEeCCC-----ceEEEeCC
Q 022967           75 ILNGPEDVCVDR--NGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK-----GLLKVTEE  145 (289)
Q Consensus        75 ~~~~p~~l~~d~--~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~-----~i~~~~~~  145 (289)
                      .+..|.+|++|+  +|+||+.+..++|++++.++ .+..+......|. +|+++++|+ ||+++...     .++.++.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            378999999995  58999887668999999655 5666666667799 999999998 99998632     36666655


Q ss_pred             C-eE---EEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCC
Q 022967          146 G-VT---VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (289)
Q Consensus       146 g-~~---~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~  218 (289)
                      | +.   .+.      .+..|.++++++ +|+|||++..                 .++|++++++++....+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCC
Confidence            5 32   222      246799999999 8999999864                 478999999877663332  2346


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeecc--------------CCCCCC-ceee--------CC
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVEN--------------LPGGPD-NIKL--------AP  273 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--------------~~~~p~-~i~~--------d~  273 (289)
                      .|+++++++++++|||++..+++|++++.++.  .+.....+...              .-..|. ++++        |.
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            79999999999999999999999999998863  11111111110              013577 7888        56


Q ss_pred             CCCEEEEEeCc
Q 022967          274 DGSFWIAILQV  284 (289)
Q Consensus       274 ~G~lwv~~~~g  284 (289)
                      +|+|||+....
T Consensus       351 ~g~lyvaD~~n  361 (430)
T 3tc9_A          351 EYDFYFCDREN  361 (430)
T ss_dssp             CEEEEEEEGGG
T ss_pred             CCeEEEEECCC
Confidence            79999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.77  E-value=4.8e-17  Score=144.99  Aligned_cols=183  Identities=11%  Similarity=0.097  Sum_probs=135.1

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCC-----ceEEee-eecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-----TWENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g-----~~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~  145 (289)
                      +..|.+|++|+ ++.||+++ .+++|++++.+|     ....+. .....|. ||++|. .++||+++.. +.|.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            67899999997 78899666 678999998665     223332 2456788 999996 6789999976 468888866


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFAN  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~  221 (289)
                      |  .+.+..    ..+..|++|+++| +|.||+++..                ..++|++++.++...+.+ ..++..|+
T Consensus       190 g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          190 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEEe----CCCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceE
Confidence            6  444443    1345799999998 6789999853                136799999986555444 45688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCceeeCCCCCEEEEEeC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ||+++++++.|||+|+..++|++++++|..   ...+...  .-..|.+|+++.+ ++|++.+.
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~~-~lywtd~~  309 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDII  309 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEETT-EEEEEESS
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeCC-EEEEecCC
Confidence            999999999999999999999999998743   2233322  1257899999764 66666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=9.9e-17  Score=135.86  Aligned_cols=184  Identities=13%  Similarity=0.208  Sum_probs=138.3

Q ss_pred             cCCcceEEEccCCCEEEEec-CCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEEE
Q 022967           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~~  150 (289)
                      ...|.++++|++|++|+++. +++|++++.+|+...+..  ....|. +++++++|+||+++.. .++++++.+| ...+
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            46799999999999998875 688999997787765542  234678 9999999999999854 5799999766 5544


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--eCCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~p~gl~~~~d  228 (289)
                      ...   .....+.+++++++|++|+++..                 .+.|+++|+ +++...+  ......|.+++++++
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            321   12346889999999999998753                 368999999 5666554  234667899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCceeeCCCCCEEEEEeC-ccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQ-VFI  286 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~lwv~~~~-g~i  286 (289)
                      ++ +|+++...++|++|+.++ ..   ..+ .......|.+|++|++|++|+++.. +++
T Consensus       194 g~-l~v~~~~~~~i~~~~~~g-~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  248 (299)
T 2z2n_A          194 DA-LWFVEIIGNKIGRITTSG-EI---TEFKIPTPNARPHAITAGAGIDLWFTEWGANKI  248 (299)
T ss_dssp             SS-EEEEETTTTEEEEECTTC-CE---EEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred             CC-EEEEccCCceEEEECCCC-cE---EEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence            88 999998889999998733 22   122 1112256889999999999999854 444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.7e-16  Score=134.34  Aligned_cols=181  Identities=14%  Similarity=0.256  Sum_probs=136.7

Q ss_pred             cCCcceEEEccCCCEEEEec-CCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEEE
Q 022967           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~~  150 (289)
                      ...|.++++|++|++|+++. +++|.+++.++++..+..  ....|. +++++++|++|+++.. .++++++.+| ++.+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            57899999999999998885 688999996677765542  235678 9999999999999864 5699999657 6554


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d  228 (289)
                      ...   .....+.+|+++++|++|+++..                 .+.|+++|++ ++...+.  .....|++++++++
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITDD-GKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECCC-CCEEEecCCCCCCCCceEEEcCC
Confidence            321   12346889999999999999753                 3689999994 5555442  34567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCceeeCCCCCEEEEEeC
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++ +|+++...++|++|+.++ ..   ..+ .......|.++++|.+|++|+++..
T Consensus       152 g~-l~v~~~~~~~i~~~~~~g-~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITESG-DI---TEFKIPTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             SC-EEEEETTTTEEEEECTTC-CE---EEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CC-EEEEeCCCCEEEEEcCCC-cE---EEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence            86 999988889999998732 22   122 1122246889999999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=9.8e-17  Score=139.98  Aligned_cols=192  Identities=14%  Similarity=0.159  Sum_probs=132.5

Q ss_pred             CCcceEEEccCCCEEEEec---CC--eEEEEecCCceEEeee-------ecCcCccCeEEcCCCcEEEEeCC------Cc
Q 022967           77 NGPEDVCVDRNGVLYTATR---DG--WIKRLHKNGTWENWKL-------IGGDTLLGITTTQENEILVCDAD------KG  138 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~---~g--~i~~~~~~g~~~~~~~-------~~~~p~~gl~~d~~g~l~v~~~~------~~  138 (289)
                      ..|++|+++++|++|++..   ++  +|++++ +|+...+..       ....|. ++++|++|+|||+|.+      .+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcCCCCcCCCCe
Confidence            5899999999999998752   34  788888 776654421       124688 9999999999999964      57


Q ss_pred             eEEEe-CCC-e-EEEEec-cCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          139 LLKVT-EEG-V-TVLASH-VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       139 i~~~~-~~g-~-~~~~~~-~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      |+++| .+| + +.+... ........++++++++ +|.+|+++.+..              ..+.|+++|+++++...+
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEEEEECCCCCEEEE
Confidence            99999 667 3 333221 1122334679999997 478999986310              135677777765554443


Q ss_pred             eCC------------------------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEec---CCCCcceeee--
Q 022967          214 LDS------------------------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLK---GESKEQTEIF--  258 (289)
Q Consensus       214 ~~~------------------------------~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~---~~~~~~~~~~--  258 (289)
                      ..+                              ...++||++++|++.||++++..++|++++.+   ...+...+.+  
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            211                              12479999999999999999988899999853   1111111100  


Q ss_pred             --eccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          259 --VENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       259 --~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                        .....+.|+++++|++|++|++....
T Consensus       241 ~~~~g~~g~pdgia~d~~G~l~va~~~~  268 (343)
T 2qe8_A          241 IERYSEKPICDGISIDKDHNIYVGDLAH  268 (343)
T ss_dssp             CEEEEECCSCSCEEECTTCCEEEEEGGG
T ss_pred             eEecccCCCCceEEECCCCCEEEEccCC
Confidence              00112479999999999999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.75  E-value=2.5e-16  Score=147.62  Aligned_cols=185  Identities=16%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEee-eecCcCccCeEEcC-CCcEEEEeCCC-ceEEEeCCC--
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG--  146 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~~-~i~~~~~~g--  146 (289)
                      .+..|.+|++|+ +|.||+++ ..++|++++.+|. .+.+. .....|. |||+|. .++||++|... .|.+++.+|  
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            367789999998 78999776 6789999997774 33333 3346899 999995 67899999764 577777666  


Q ss_pred             eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~  224 (289)
                      .+.+..    ..+..|++|+++| +|.|||+|..                ..++|++.+.++.....+ ...+..|+||+
T Consensus       426 ~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Gla  485 (619)
T 3s94_A          426 RKILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGLA  485 (619)
T ss_dssp             CEEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence            455542    2467899999999 4999999854                136899999986555444 34689999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ++++++.|||+|+..++|.+++++|...   +.+.......|.+|+++++ +||++++..
T Consensus       486 lD~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~~-~ly~tD~~~  541 (619)
T 3s94_A          486 LDYDEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLGD-YVYWTDWQR  541 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEETT-EEEEECTTS
T ss_pred             EcccCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEECC-EEEEeecCC
Confidence            9998889999999999999999987532   2232222357999999875 899988754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.75  E-value=9.6e-17  Score=150.42  Aligned_cols=183  Identities=17%  Similarity=0.164  Sum_probs=134.2

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCce--EEe-eeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC--
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW--ENW-KLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~--~~~-~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g--  146 (289)
                      +..|.+|++|+ ++.||+++ .+++|.+++.+|..  +.+ ......|. ||++|. .++||+++.. +.|.+++.+|  
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence            67899999997 78899766 67899999977752  333 33346799 999997 5689999976 4577778667  


Q ss_pred             eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~  224 (289)
                      .+.+..    ..+..|++|++||. |.|||+|..                ..++|++.++++...+.+. ..+..|+||+
T Consensus       118 ~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla  177 (619)
T 3s94_A          118 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  177 (619)
T ss_dssp             CEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEEE
Confidence            455543    23568999999984 789999843                1368999999866555443 5788999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++++++.|||+|...++|++++++|...   +.+.......|.+|+++++ ++|++.+.
T Consensus       178 ld~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~gi~~~~~-~ly~td~~  232 (619)
T 3s94_A          178 LDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHPFALTLFED-ILYWTDWS  232 (619)
T ss_dssp             EETTTTEEEEEETTTCCEEEESSSCCEE---C---------CCCEEESSS-EEEEECTT
T ss_pred             EEccCCEEEEEeCCCCeEEEecCCCCcc---EEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence            9999889999999999999999987422   2222222257999999986 88888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=3.7e-16  Score=135.50  Aligned_cols=188  Identities=12%  Similarity=0.049  Sum_probs=133.5

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecC------cCccCeEEcCCCcEEEEeC--CCceEEEe-C
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGG------DTLLGITTTQENEILVCDA--DKGLLKVT-E  144 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~------~p~~gl~~d~~g~l~v~~~--~~~i~~~~-~  144 (289)
                      ...|++++++++|++|+++ .++.|.++| .+++.........      .|. +|++ .+++|||++.  .+.|..+| .
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            4789999998889999988 789999999 4566554333344      788 9999 5789999985  46799999 6


Q ss_pred             CC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcc
Q 022967          145 EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFAN  221 (289)
Q Consensus       145 ~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~  221 (289)
                      ++ +......     ...|.+++++++|++|++......       ........+.|+++|++++++.....  ....|+
T Consensus       161 t~~~~~~i~~-----g~~p~~i~~~~dG~l~v~~~~~~~-------~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          161 TDKVVDELTI-----GIQPTSLVMDKYNKMWTITDGGYE-------GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TTEEEEEEEC-----SSCBCCCEECTTSEEEEEBCCBCT-------TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCeEEEEEEc-----CCCccceEEcCCCCEEEEECCCcc-------CCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            66 3322221     135789999999999998754100       00000113689999998887653322  234799


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEE
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAI  281 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~  281 (289)
                      +++++||++.||+++.   .|++||.++.++.. ..+.......|+++++|+ +|++||+.
T Consensus       229 ~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             eEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            9999999999999975   89999987654422 122221135799999996 78999998

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.74  E-value=1.2e-16  Score=140.14  Aligned_cols=166  Identities=14%  Similarity=0.165  Sum_probs=108.1

Q ss_pred             ceeEeccCCcCCcceEEEccCCC-EEEEecCCeEEEEecCCceEE-ee-------eecCcCccCeEEcC----CCcEEEE
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWEN-WK-------LIGGDTLLGITTTQ----ENEILVC  133 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~-l~v~~~~g~i~~~~~~g~~~~-~~-------~~~~~p~~gl~~d~----~g~l~v~  133 (289)
                      .++.+..+ +..|++|+++++|+ ||+++..|+|++++.+|+... +.       ...+.++ ||++++    ++.||++
T Consensus         9 ~~~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEE
T ss_pred             EEEEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEE
Confidence            44556655 78999999999999 999998899999997775432 11       1224567 999998    5899999


Q ss_pred             eCC--------CceEEEe-C-C-C-e---EEEEeccCC--ccccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          134 DAD--------KGLLKVT-E-E-G-V---TVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       134 ~~~--------~~i~~~~-~-~-g-~---~~~~~~~~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      ...        .+|++++ . + + +   +++....+.  ...+.+.+|+++|||.|||+.+....  ....++.  ...
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~~--~~~  162 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQDL--DKL  162 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGCT--TSC
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCCC--CCC
Confidence            642        3588876 3 2 2 2   233333332  24567889999999999999764211  1101110  123


Q ss_pred             CCEEEEEeCCCC-------------eEEEeeCCCCCcceEEEecCCCEEEEEeCC
Q 022967          197 HGKLLKYDPSLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       197 ~g~i~~~~~~~~-------------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~  238 (289)
                      .|+|+|+++++.             ..++++.++++|.|++|+++.+.||++|.+
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence            467888888753             344556677777777777744447776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=4.5e-16  Score=139.16  Aligned_cols=189  Identities=16%  Similarity=0.229  Sum_probs=129.8

Q ss_pred             cCCcceEEEccCCC-EEEEecCC--eEEEEecCCce--EEe----eeecCcCccCeEEcC-CCcEEEEeCCCceEEEe-C
Q 022967           76 LNGPEDVCVDRNGV-LYTATRDG--WIKRLHKNGTW--ENW----KLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-E  144 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~~~g--~i~~~~~~g~~--~~~----~~~~~~p~~gl~~d~-~g~l~v~~~~~~i~~~~-~  144 (289)
                      ...|. ++++++|+ ||+++.++  +|++++.++..  ..+    ......|. ++++++ +|.||+++..+.|++++ .
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            35577 99999776 67777544  89999954332  222    11346788 999998 78999988756799999 4


Q ss_pred             CC-eEEEEec-cCCccccCcc-ceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C---
Q 022967          145 EG-VTVLASH-VNGSRINLAD-DLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S---  216 (289)
Q Consensus       145 ~g-~~~~~~~-~~~~~~~~~~-~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~---  216 (289)
                      .+ ...+... ..+.....|. +|+++| +|+||+++..                 .++|+++++++. ...+.. .   
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~g~-~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPDGE-CEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTCC-EEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecCCC-EEEEEeCCCCC
Confidence            45 5444221 1111112345 999999 6899999864                 468999998854 444432 2   


Q ss_pred             -----------CCCcceEEEecCCCEEEEEeC-CCCeEEEEEecCCCCcceee------eecc-----CCCCCCceeeCC
Q 022967          217 -----------LFFANGVALSKDEDYLVVCET-FKFRCLKYWLKGESKEQTEI------FVEN-----LPGGPDNIKLAP  273 (289)
Q Consensus       217 -----------~~~p~gl~~~~d~~~l~v~~~-~~~~i~~~~~~~~~~~~~~~------~~~~-----~~~~p~~i~~d~  273 (289)
                                 +..|++++++++|+ |||+|+ .+++|++|++.+..+.....      +.+.     ....|.+|++|+
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence                       56799999999998 999999 99999999954322211100      0000     014699999999


Q ss_pred             CCCEEEEEeCcc
Q 022967          274 DGSFWIAILQVF  285 (289)
Q Consensus       274 ~G~lwv~~~~g~  285 (289)
                      +|+|||+....+
T Consensus       390 ~g~lyVad~~n~  401 (409)
T 3hrp_A          390 EGGYWIAEAWGK  401 (409)
T ss_dssp             SSEEEEEESTTC
T ss_pred             CCCEEEEECCCC
Confidence            999999987643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.72  E-value=1e-15  Score=146.63  Aligned_cols=183  Identities=11%  Similarity=0.081  Sum_probs=134.9

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-----eEEeee-ecCcCccCeEEcCCC-cEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WENWKL-IGGDTLLGITTTQEN-EILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-----~~~~~~-~~~~p~~gl~~d~~g-~l~v~~~~-~~i~~~~~~  145 (289)
                      +..|.+|++|. ++.||+++ .+++|++++.+|.     ...+.. ....|. ||++|..+ +||+++.. +.|.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            67899999998 78899766 6788999986652     233332 456799 99999654 89999976 468888866


Q ss_pred             C--eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFAN  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~  221 (289)
                      |  .+.+..    ..+..|++|++++. |+|||++..                ..++|++++.++.....+ ..++..|+
T Consensus       502 G~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          502 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             SSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCeEEEEEe----CCCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCce
Confidence            6  445443    23457999999985 899999854                126899999986665544 45688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCceeeCCCCCEEEEEeC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ||++++.++.|||+|...++|++++++|...   ..++..  .-..|.+|+++. ++||++.+.
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~-~~lYwtD~~  621 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDII  621 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEeC-CEEEEEECC
Confidence            9999998889999999999999999987532   223222  113577888865 488888764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.70  E-value=2.1e-15  Score=141.44  Aligned_cols=185  Identities=14%  Similarity=0.108  Sum_probs=138.1

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCce--EEeee------ecCcCccCeEEcCC-CcEEEEeCCCc-eEEE
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW--ENWKL------IGGDTLLGITTTQE-NEILVCDADKG-LLKV  142 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~--~~~~~------~~~~p~~gl~~d~~-g~l~v~~~~~~-i~~~  142 (289)
                      .+..+.+|++|+ ++.||+++ ..++|++++.+|..  +.+..      ....|. |||+|.. ++||+++...+ |..+
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v~  416 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINVT  416 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEEE
Confidence            367788899998 78899766 67899999977743  23322      245788 9999976 57999997644 5566


Q ss_pred             eCCC--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCC
Q 022967          143 TEEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLF  218 (289)
Q Consensus       143 ~~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~  218 (289)
                      +.+|  .+.+...    .+..|++|+++| +|.|||+|...               ..++|++.++++...+.+. ..+.
T Consensus       417 ~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~l~  477 (628)
T 4a0p_A          417 RLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSGLS  477 (628)
T ss_dssp             ETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSSCS
T ss_pred             ECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEeccCC
Confidence            6677  3444331    346799999999 89999998531               1137999999866555444 4688


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      .|+||+++++++.|||+|...++|++++++|..   .+.+.......|.+|++++ |++|++++.
T Consensus       478 ~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~tD~~  538 (628)
T 4a0p_A          478 KPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYWIDKQ  538 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEEEETT
T ss_pred             CccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEEEECC
Confidence            999999999988999999999999999998753   3344433335799999997 789988865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.69  E-value=1.8e-15  Score=136.05  Aligned_cols=187  Identities=12%  Similarity=0.076  Sum_probs=127.7

Q ss_pred             CcCCcceEEEccCCCEEEEecC-----CeEEEEecCCceE--EeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeC-
Q 022967           75 ILNGPEDVCVDRNGVLYTATRD-----GWIKRLHKNGTWE--NWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTE-  144 (289)
Q Consensus        75 ~~~~p~~l~~d~~g~l~v~~~~-----g~i~~~~~~g~~~--~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~-  144 (289)
                      .+..|.+|++|++|+||+++..     ..++.++.++.+.  ........|. ++++|+ +|+|||++.. +.|++++. 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~-giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAK-TCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBC-CCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCC-EEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            3678999999999999988753     2466666444322  1222457799 999998 8999999976 46999994 


Q ss_pred             CC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeE---EEeeC-
Q 022967          145 EG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SILLD-  215 (289)
Q Consensus       145 ~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~---~~~~~-  215 (289)
                      +| + +.+.....   ...+.+|+++++|+ |||++..                 +++|++++.+  ++.+   ..++. 
T Consensus       259 ~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LYvad~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag~  318 (433)
T 4hw6_A          259 TGTLTEEEVMMDT---KGSNFHIVWHPTGDWAYIIYNG-----------------KHCIYRVDYNRETGKLAVPYIVCGQ  318 (433)
T ss_dssp             TCCEEEEEEECSC---CSSCEEEEECTTSSEEEEEETT-----------------TTEEEEEEBCTTTCCBCCCEEEEEC
T ss_pred             CCeEEEEEeccCC---CCCcccEEEeCCCCEEEEEeCC-----------------CCEEEEEeCCCCCcccCcEEEEEec
Confidence            47 5 44432211   12345799999997 9999864                 4688887754  3322   12221 


Q ss_pred             --------------CCCCcceEEE---------ecCCCEEEEEeCCCCeEEEEEecCCCCccee--------eeecc---
Q 022967          216 --------------SLFFANGVAL---------SKDEDYLVVCETFKFRCLKYWLKGESKEQTE--------IFVEN---  261 (289)
Q Consensus       216 --------------~~~~p~gl~~---------~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~---  261 (289)
                                    .+..|.++++         +.+++ |||+|+.+++|++++.+|. +....        -+.+.   
T Consensus       319 ~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G~-v~t~~G~g~~~~~G~~dG~~~  396 (433)
T 4hw6_A          319 HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEGR-VTTYAGRGNSREWGYVDGELR  396 (433)
T ss_dssp             TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTSE-EEEEECCCTTCSSCCBCEETT
T ss_pred             CCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCCC-EEEEEeCCCCCccccCCCccc
Confidence                          2567999999         65554 9999999999999986542 11100        00111   


Q ss_pred             ---CCCCCCceeeC-CCCCEEEEEeCc
Q 022967          262 ---LPGGPDNIKLA-PDGSFWIAILQV  284 (289)
Q Consensus       262 ---~~~~p~~i~~d-~~G~lwv~~~~g  284 (289)
                         .-..|.+|++| .+|+|||+....
T Consensus       397 ~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          397 SQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             TTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             cccEeCCCcEEEEECCCCEEEEEeCCC
Confidence               11469999999 899999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=3.6e-15  Score=129.16  Aligned_cols=177  Identities=10%  Similarity=0.153  Sum_probs=119.4

Q ss_pred             ccCCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCce---EEeee---------ecCcCccCeEEcC-CCcEEEEeC--
Q 022967           72 GEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTW---ENWKL---------IGGDTLLGITTTQ-ENEILVCDA--  135 (289)
Q Consensus        72 ~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~---~~~~~---------~~~~p~~gl~~d~-~g~l~v~~~--  135 (289)
                      ..+.+..|.+|++|++|+||+++ .+++|.+++.+|+.   ..+..         ....|. +|++++ +|+|||++.  
T Consensus        86 ~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEECSS
T ss_pred             CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeCCC
Confidence            33456789999999999999776 57899999987762   22311         123688 999998 899999995  


Q ss_pred             CCceEEEeCCC--eEEEEeccC-----CccccCccceEEcCC-CcEEEeeCCCc----cCcc--cccccc----------
Q 022967          136 DKGLLKVTEEG--VTVLASHVN-----GSRINLADDLIAATD-GSIYFSVASTK----FGLH--NWGLDL----------  191 (289)
Q Consensus       136 ~~~i~~~~~~g--~~~~~~~~~-----~~~~~~~~~l~~~~d-G~lyv~~~~~~----~~~~--~~~~~~----------  191 (289)
                      .++|.+++.+|  +..+.....     ...+..|.+|+++++ |+||+++....    |...  .....+          
T Consensus       165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~  244 (329)
T 3fvz_A          165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF  244 (329)
T ss_dssp             CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred             CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence            46788999777  444322211     134567999999998 89999986521    1100  000000          


Q ss_pred             -----------------ceecCCCEEEEEeCCCCeEEEee----CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          192 -----------------LEAKPHGKLLKYDPSLNETSILL----DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       192 -----------------~~~~~~g~i~~~~~~~~~~~~~~----~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                                       +.......++.++..+++.....    ..+..|.+|+++++| .|||++..+++|++|++++.
T Consensus       245 ~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          245 AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence                             00011225666775555554432    456778999999988 59999999999999988764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.69  E-value=1.2e-15  Score=131.79  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             CCcceEEEcc-CCCEEEEecCCeEEEEecC-CceEEeeee-----cCcCccCeEEcC-CCcEEEEeCC------------
Q 022967           77 NGPEDVCVDR-NGVLYTATRDGWIKRLHKN-GTWENWKLI-----GGDTLLGITTTQ-ENEILVCDAD------------  136 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l~v~~~~g~i~~~~~~-g~~~~~~~~-----~~~p~~gl~~d~-~g~l~v~~~~------------  136 (289)
                      ..|.+|++++ +|+||+++..++|++++.+ +..+.+...     ...|. ++++|+ +|+|||++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            4689999997 8999999877779999865 444444321     23578 999999 9999999854            


Q ss_pred             ------CceEEEeC-CC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          137 ------KGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       137 ------~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                            .++++++. ++ .+.+..     .+..|++|++++||+ |||++..                 .++|++++.++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCC
Confidence                  35899994 46 555433     245789999999986 9999753                 36899999874


Q ss_pred             ---CeEEEeeCCCCCcceEEEecCCCEEEEEeCC----------CCeEEEEEecCCCCcceeeeecc--C-CCCCCceee
Q 022967          208 ---NETSILLDSLFFANGVALSKDEDYLVVCETF----------KFRCLKYWLKGESKEQTEIFVEN--L-PGGPDNIKL  271 (289)
Q Consensus       208 ---~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~--~-~~~p~~i~~  271 (289)
                         +..+.+.. ...|.+++++++|+ |||++..          ..+|++|+.++..+   ..+...  . ...|.+++.
T Consensus       217 ~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~---~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          217 PKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNIL---EVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             TTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEE---EEEECCTTTTTSCCCEEEE
T ss_pred             CcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEE---EEEECCCCCccccceEEEE
Confidence               34444433 22399999999998 9999865          46799998765422   222211  1 235677766


Q ss_pred             CCCCCEEEEEeC
Q 022967          272 APDGSFWIAILQ  283 (289)
Q Consensus       272 d~~G~lwv~~~~  283 (289)
                      + +|+|||++..
T Consensus       292 ~-~g~L~v~~~~  302 (322)
T 2fp8_A          292 H-DGLLYIGTLF  302 (322)
T ss_dssp             E-TTEEEEECSS
T ss_pred             e-CCEEEEeecC
Confidence            4 6899999753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=2.2e-16  Score=150.10  Aligned_cols=183  Identities=11%  Similarity=0.098  Sum_probs=132.0

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCC-----ceEEee-eecCcCccCeEEc-CCCcEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-----TWENWK-LIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g-----~~~~~~-~~~~~p~~gl~~d-~~g~l~v~~~~-~~i~~~~~~  145 (289)
                      +..|.+|++++ ++.||+++ .+++|++++.++     ....+. .....|. ||++| ..++||+++.. ++|.+++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            57899999997 67899776 668999999665     222222 2335688 99999 56789999865 568888866


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFAN  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~  221 (289)
                      |  .+.+..    ..+..|++|+++| +|.|||++..                ..++|+++++++...+.+ ...+..|+
T Consensus       484 g~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          484 GVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            6  444432    2345789999998 5789999853                126799998875544433 35688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCCCCCEEEEEeC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ||+++++++.|||+++..++|++++++|..   ...++.  .....|.+|++|.+ ++|++.+.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence            999999988899999999999999988632   223332  12257999999986 56666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.68  E-value=8.3e-15  Score=128.19  Aligned_cols=179  Identities=13%  Similarity=0.129  Sum_probs=131.9

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEecCCc-eEEeeeecCcCccCeEEc-CCCcEEEEeCC-CceEEEeCCC--eEEEEecc
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASHV  154 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~~~g~-~~~~~~~~~~p~~gl~~d-~~g~l~v~~~~-~~i~~~~~~g--~~~~~~~~  154 (289)
                      .+.+.++++.|+++... .|.+++.+|. .+........|. ++++| .++.||++|.. +.|++++.+|  .+.+..  
T Consensus        37 ~C~~~~~~~~ll~~~~~-~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--  112 (349)
T 3v64_C           37 SCKALGPEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--  112 (349)
T ss_dssp             CEEESSSCCEEEEECBS-CEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--
T ss_pred             cccccccCceeEeeccc-ceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--
Confidence            44555566677777654 4999997664 445555567788 99999 56789999965 5689999555  454432  


Q ss_pred             CCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEE
Q 022967          155 NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYL  232 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l  232 (289)
                        ..+..|.+|++|+ +|+||+++..                 .++|.+++.++...+.+. .++..|++++++|+++.|
T Consensus       113 --~~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C          113 --TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             --CCCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE
Confidence              1245789999997 6799999864                 368999999866544443 567899999999988899


Q ss_pred             EEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCCCEEEEEeCc
Q 022967          233 VVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAILQV  284 (289)
Q Consensus       233 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~lwv~~~~g  284 (289)
                      ||+|.+. .+|++++++|...   ..+....-..|++|++| .+++||++....
T Consensus       174 y~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSC---EESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEeccCCCCEEEEEeCCCCCc---EEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence            9999988 9999999987422   22322223579999999 567899998654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.67  E-value=1.6e-14  Score=121.30  Aligned_cols=176  Identities=15%  Similarity=0.117  Sum_probs=128.5

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceE-Eeee-ecCcCccCeEEcC-CCcEEEEeCC---CceEEEeCCC
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE-NWKL-IGGDTLLGITTTQ-ENEILVCDAD---KGLLKVTEEG  146 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~-~~~~-~~~~p~~gl~~d~-~g~l~v~~~~---~~i~~~~~~g  146 (289)
                      .+..|+++++|+ +++||+++ ..++|.+++.+|+.. .+.. ....|. ++++|+ +|+||+++..   ..|++++.+|
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            367899999998 57899777 568999999777532 2322 235788 999998 5789999865   4688888666


Q ss_pred             --eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceE
Q 022967          147 --VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV  223 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl  223 (289)
                        .+.+..    ..+..|++|+++++ ++||+++..                 .++|++++++++....+...+..|.++
T Consensus       156 ~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~P~gi  214 (267)
T 1npe_A          156 TNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQYPFAV  214 (267)
T ss_dssp             CCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCSEEEE
T ss_pred             CCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECC-----------------CCEEEEEecCCCceEEEecCCCCceEE
Confidence              444432    13457999999996 589999864                 468999999866655566677889999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      +++  ++.|||++..+++|++++.++.+.  .+.........|.+|++..++.
T Consensus       215 ~~d--~~~lyva~~~~~~v~~~d~~~g~~--~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          215 TSY--GKNLYYTDWKTNSVIAMDLAISKE--MDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTTEE--EEEECCSSCCCCCCEEEECSCC
T ss_pred             EEe--CCEEEEEECCCCeEEEEeCCCCCc--eEEEccccccccceeeecCccC
Confidence            875  567999999999999999764322  1122111112589999888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=4.4e-15  Score=133.51  Aligned_cols=187  Identities=13%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             cCCcceEEEccCCC-EEEEecC-----CeEEEEecCCceE--EeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDRNGV-LYTATRD-----GWIKRLHKNGTWE--NWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~~~-----g~i~~~~~~g~~~--~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~  145 (289)
                      ...|.+|++|++|+ ||+++..     ..++.++.+|.+.  ........|. ++++++ +|+||+++.. ++|++++.+
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~-giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN-GAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC-CEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce-EEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            57899999999988 9988742     2466677666543  2222456799 999998 8999999976 569999954


Q ss_pred             C--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeE---EEeeC--
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NET---SILLD--  215 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~---~~~~~--  215 (289)
                      +  ...+... .  ....|++|+++++|+ ||+++..                 .++|++++.++  +.+   ..++.  
T Consensus       257 ~~~~~~~~~~-~--~~~~P~gia~~pdG~~lyv~d~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag~~  316 (430)
T 3tc9_A          257 TQETTPLFTI-Q--DSGWEFHIQFHPSGNYAYIVVVN-----------------QHYILRSDYDWKTKRLTTPYIVCGQQ  316 (430)
T ss_dssp             TTEEEEEEEC-S--SSSCCEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEECCCEEEEECT
T ss_pred             CCcEEEEEEc-C--CCCcceeEEEcCCCCEEEEEECC-----------------CCEEEEEeCCcccccccceEEEeccC
Confidence            4  4333321 1  124689999999998 9999864                 46788877653  222   12221  


Q ss_pred             -------------CCCCcc-eEEEec-------CCCEEEEEeCCCCeEEEEEecCCCCcceee--------eecc-----
Q 022967          216 -------------SLFFAN-GVALSK-------DEDYLVVCETFKFRCLKYWLKGESKEQTEI--------FVEN-----  261 (289)
Q Consensus       216 -------------~~~~p~-gl~~~~-------d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~--------~~~~-----  261 (289)
                                   .+..|. +++++.       ....|||+|+.+++|++++.+|. +.....        +.+.     
T Consensus       317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~-v~~~~g~g~~~~~G~~dG~~~~~  395 (430)
T 3tc9_A          317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGR-VTTFAGRGSNGTSGYNDGDLRQE  395 (430)
T ss_dssp             TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSE-EEEEEECCTTSSSSCBCEETTTT
T ss_pred             CCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCc-EEEEEeCCCCCCCcccCCCchhh
Confidence                         155688 788753       12359999999999999986542 111100        0011     


Q ss_pred             -CCCCCCceeeCC-CCCEEEEEeCc
Q 022967          262 -LPGGPDNIKLAP-DGSFWIAILQV  284 (289)
Q Consensus       262 -~~~~p~~i~~d~-~G~lwv~~~~g  284 (289)
                       .-..|.+|++|+ +|+|||+....
T Consensus       396 ~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          396 ARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             cEeCCCcEEEEECCCCEEEEEECCC
Confidence             013699999998 69999998653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=3.1e-14  Score=121.03  Aligned_cols=177  Identities=11%  Similarity=0.187  Sum_probs=127.2

Q ss_pred             cCCcceEEEccCCCEEEEec-CCeEEEEec-CCceEEeeee-----cCcCccCeEEcCCCcEEEEeC-------------
Q 022967           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHK-NGTWENWKLI-----GGDTLLGITTTQENEILVCDA-------------  135 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~-~g~i~~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~g~l~v~~~-------------  135 (289)
                      ...|.+++++++|+||+++. +++|.+++. +|+...+...     ...+. +++++++|++|+++.             
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccc
Confidence            45689999999999998774 588999995 8887655322     23577 999999999999853             


Q ss_pred             -----CCceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-CC
Q 022967          136 -----DKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN  208 (289)
Q Consensus       136 -----~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~  208 (289)
                           ..+|++++.+| ++.+..     ....++++++++||++++++..                 .+.|++++.+ ++
T Consensus       147 ~~~~~~~~l~~~~~~g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~~-----------------~~~i~~~~~~~~g  204 (296)
T 3e5z_A          147 EMELPGRWVFRLAPDGTLSAPIR-----DRVKPNGLAFLPSGNLLVSDTG-----------------DNATHRYCLNARG  204 (296)
T ss_dssp             CCCSSSCEEEEECTTSCEEEEEC-----CCSSEEEEEECTTSCEEEEETT-----------------TTEEEEEEECSSS
T ss_pred             cccCCCcEEEEECCCCCEEEeec-----CCCCCccEEECCCCCEEEEeCC-----------------CCeEEEEEECCCC
Confidence                 24799999557 655432     2346789999999987777653                 3678888865 34


Q ss_pred             eE----EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCC-CEEEEEe
Q 022967          209 ET----SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDG-SFWIAIL  282 (289)
Q Consensus       209 ~~----~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G-~lwv~~~  282 (289)
                      ++    ..+......|.+++++++|+ +|++.  .++|.+|+.++..+   ..+. .... |.+++++ ++| .||+++.
T Consensus       205 ~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~~---~~~~-~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          205 ETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDEL---GRVL-TPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCEE---EEEE-CSSC-CCEEEEESTTSCEEEEEET
T ss_pred             cCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCEE---EEEE-CCCC-ceeEEEECCCCCEEEEEcC
Confidence            44    22322345689999999998 99997  68999999765322   2222 1223 8888884 565 6999986


Q ss_pred             C
Q 022967          283 Q  283 (289)
Q Consensus       283 ~  283 (289)
                      +
T Consensus       277 ~  277 (296)
T 3e5z_A          277 T  277 (296)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.65  E-value=1.1e-14  Score=124.43  Aligned_cols=180  Identities=14%  Similarity=0.162  Sum_probs=129.5

Q ss_pred             CCcceEEEccC-CCEEEEecCCeEEEEecCCceEEe-eee-----cCcCccCeEEcCCCcEEEEeCC-------------
Q 022967           77 NGPEDVCVDRN-GVLYTATRDGWIKRLHKNGTWENW-KLI-----GGDTLLGITTTQENEILVCDAD-------------  136 (289)
Q Consensus        77 ~~p~~l~~d~~-g~l~v~~~~g~i~~~~~~g~~~~~-~~~-----~~~p~~gl~~d~~g~l~v~~~~-------------  136 (289)
                      ..|.+++++++ |+||+++..++|++++.+|+...+ ...     ...+. ++++|++|++|+++..             
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCccccccccccccc
Confidence            56899999998 999998876789999966877655 321     13477 9999999999999854             


Q ss_pred             ---CceEEEeCCC-eEEEEeccCCccccCccceEEc----CCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCC-
Q 022967          137 ---KGLLKVTEEG-VTVLASHVNGSRINLADDLIAA----TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-  206 (289)
Q Consensus       137 ---~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~----~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-  206 (289)
                         .++++++.+| ...+...     ...+++++++    +|| .||+++..                 .++|++++.+ 
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~~  207 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKG  207 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECCC
Confidence               3689998557 5544322     2357899999    999 69998753                 3678888864 


Q ss_pred             CCeEE---Eee---CCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EE
Q 022967          207 LNETS---ILL---DSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FW  278 (289)
Q Consensus       207 ~~~~~---~~~---~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  278 (289)
                      +++..   .+.   ... ..|.+++++++|+ +|+++...++|.+|+.++....  ..+. .....|.+++++++|+ ||
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK--MRIR-CPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS--EEEE-CSSSCEEEEEECTTSSEEE
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe--EEEe-CCCCCceeEEECCCCCEEE
Confidence            34321   111   122 5689999999987 9999877889999987622221  1121 1125688999999998 99


Q ss_pred             EEEeC
Q 022967          279 IAILQ  283 (289)
Q Consensus       279 v~~~~  283 (289)
                      +++..
T Consensus       284 v~~~~  288 (314)
T 1pjx_A          284 VTEHE  288 (314)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.65  E-value=1.6e-14  Score=128.13  Aligned_cols=180  Identities=12%  Similarity=0.113  Sum_probs=132.3

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeeecCcCccCeEEc-CCCcEEEEeCC-CceEEEeCCC--eEEEEec
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASH  153 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d-~~g~l~v~~~~-~~i~~~~~~g--~~~~~~~  153 (289)
                      -.+.+.++++.|+++.. +.|++++.++ ..+.+......|. |+++| .++.||++|.. +.|++++.+|  .+.+.. 
T Consensus        79 ~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-  155 (386)
T 3v65_B           79 RSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-  155 (386)
T ss_dssp             SCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-
T ss_pred             CeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-
Confidence            34455566666777665 5699999655 4555556667788 99999 46789999966 5689999555  444432 


Q ss_pred             cCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCCE
Q 022967          154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDY  231 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~~  231 (289)
                         ..+..|.+|++++ +|+|||++..                 .++|.+++.++...+.+ ..++..|++++++|+++.
T Consensus       156 ---~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          156 ---TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             ---SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             ---CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence               2245789999997 6799999864                 36899999886554444 456789999999999899


Q ss_pred             EEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCCCEEEEEeCc
Q 022967          232 LVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAILQV  284 (289)
Q Consensus       232 l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~lwv~~~~g  284 (289)
                      |||++.+. .+|++++++|...   ..+....-..|.+|++| .+++||++....
T Consensus       216 ly~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             EEEeccCCCCEEEEEeCCCCCc---EEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            99999988 8999999887422   23332223579999999 567999998653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.65  E-value=6.9e-15  Score=125.53  Aligned_cols=189  Identities=14%  Similarity=0.130  Sum_probs=128.9

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecC-CceEEeeeec----C----cCccCeEE---cCCCcEEEE-eC-----
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTWENWKLIG----G----DTLLGITT---TQENEILVC-DA-----  135 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~-g~~~~~~~~~----~----~p~~gl~~---d~~g~l~v~-~~-----  135 (289)
                      -..||++.+|+ +|.+|+++ .+++|.+++++ +....+....    +    .+. ||.+   |++|+|||+ +.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            46799999987 88999988 78999999976 4444432111    1    356 9999   788999994 42     


Q ss_pred             --------CCceEEEe-C---CC-eEEEEec--cC-------CccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967          136 --------DKGLLKVT-E---EG-VTVLASH--VN-------GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       136 --------~~~i~~~~-~---~g-~~~~~~~--~~-------~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~  193 (289)
                              ...++++| .   +| ....+.-  ..       +.....+++|++|++|++||++..              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    24589999 5   46 4333331  11       113346899999999999998753              


Q ss_pred             ecCCCEEEEEeCCCCeEEEee------CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--c---C
Q 022967          194 AKPHGKLLKYDPSLNETSILL------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--N---L  262 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~~~~------~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~---~  262 (289)
                        +.+.|+++++++.....+.      ....+++||+++||++.|++.++ .++|++||+....  ..+.-..  +   .
T Consensus       157 --~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv--~~~v~~~~~G~~~~  231 (334)
T 2p9w_A          157 --GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY--AWPEPVKINGDFGT  231 (334)
T ss_dssp             --SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS--CCCEECEESSCCCC
T ss_pred             --CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc--ceeecccccCCccc
Confidence              1167999999966554432      12345789999999999999998 8999999987321  1011111  1   2


Q ss_pred             CCCCCce-eeCCCCCE-EEEEeCc
Q 022967          263 PGGPDNI-KLAPDGSF-WIAILQV  284 (289)
Q Consensus       263 ~~~p~~i-~~d~~G~l-wv~~~~g  284 (289)
                      ...|++| ....+|++ +|+....
T Consensus       232 ~~~~dgilp~~~~G~vllV~~~~~  255 (334)
T 2p9w_A          232 LSGTEKIVTVPVGNESVLVGARAP  255 (334)
T ss_dssp             CTTEEEEEEEEETTEEEEEEEETT
T ss_pred             ccCcccccccccCCEEEEEEcCCC
Confidence            2457885 67778877 6666433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.65  E-value=1.4e-14  Score=124.99  Aligned_cols=149  Identities=15%  Similarity=0.122  Sum_probs=117.5

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEE-ee-eecCcCccCeEEcC-CCcEEEEeCC--CceEEEeCCC--
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWEN-WK-LIGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~-~~-~~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~~~~g--  146 (289)
                      +..|+++++|+ +|+||+++ .+++|.+++.+|.... +. .....|. ||++|+ .|.||+++.+  ..|++++.+|  
T Consensus        78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~-giavdp~~g~ly~td~~~~~~I~r~~~dG~~  156 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR-AIALDPSSGFMYWTDWGEVPKIERAGMDGSS  156 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc-EEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence            67899999996 88999766 6789999998885433 22 4456799 999996 5789999953  5799999777  


Q ss_pred             eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~  224 (289)
                      .+.+..    ..+..|++|++++ +++|||+|..                 .++|++++.++...+.+.. .+..|.|++
T Consensus       157 ~~~~~~----~~l~~Pnglavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~P~gla  215 (318)
T 3sov_A          157 RFIIIN----SEIYWPNGLTLDYEEQKLYWADAK-----------------LNFIHKSNLDGTNRQAVVKGSLPHPFALT  215 (318)
T ss_dssp             CEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred             eEEEEE----CCCCCccEEEEeccCCEEEEEECC-----------------CCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            444433    2356899999998 5789999964                 4789999998666555554 688999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEec
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ++  ++.+||++..+++|.+++..
T Consensus       216 v~--~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          216 LF--EDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETT
T ss_pred             Ee--CCEEEEEecCCCeEEEEECC
Confidence            96  45699999999999999984

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.2e-14  Score=131.53  Aligned_cols=185  Identities=12%  Similarity=0.145  Sum_probs=132.4

Q ss_pred             cCCcceEEEcc--CCCEEEEec-CCeEEEEe-cCCceEEeeeec----CcCccCeEE-------cCCCc-EEEEeCCC--
Q 022967           76 LNGPEDVCVDR--NGVLYTATR-DGWIKRLH-KNGTWENWKLIG----GDTLLGITT-------TQENE-ILVCDADK--  137 (289)
Q Consensus        76 ~~~p~~l~~d~--~g~l~v~~~-~g~i~~~~-~~g~~~~~~~~~----~~p~~gl~~-------d~~g~-l~v~~~~~--  137 (289)
                      +..|..|++||  +++||+... .++|++++ .++.+..+....    ..|. +|++       +++|+ ||+++...  
T Consensus       138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCCCCC
Confidence            56799999997  588997774 47899999 455666654432    3588 9999       99987 99998653  


Q ss_pred             -----ceEEEe--CCC-eE------EEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEE
Q 022967          138 -----GLLKVT--EEG-VT------VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (289)
Q Consensus       138 -----~i~~~~--~~g-~~------~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~  202 (289)
                           .++.++  .+| +.      .+.      .+..|+++++++ +|.||+++..                 .+.|++
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r  273 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQVFR  273 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTEEEE
T ss_pred             cccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEE
Confidence                 277776  335 42      222      245789999999 6899999864                 478999


Q ss_pred             EeCC-------CCeE------------EE-e-eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC--Ccceeeee
Q 022967          203 YDPS-------LNET------------SI-L-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES--KEQTEIFV  259 (289)
Q Consensus       203 ~~~~-------~~~~------------~~-~-~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~  259 (289)
                      +|++       ++..            +. + ......|.+|+++|+++.|||+|+.+++|++++.++..  +.....+.
T Consensus       274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~a  353 (496)
T 3kya_A          274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFV  353 (496)
T ss_dssp             ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEE
T ss_pred             EecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEec
Confidence            9987       5543            12 2 12345689999999999999999999999999887642  11111221


Q ss_pred             cc--------------CCCCCC-ceeeC-------CCCCEEEEEeCc
Q 022967          260 EN--------------LPGGPD-NIKLA-------PDGSFWIAILQV  284 (289)
Q Consensus       260 ~~--------------~~~~p~-~i~~d-------~~G~lwv~~~~g  284 (289)
                      ..              .-..|. ++++|       .+|+|||++...
T Consensus       354 G~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N  400 (496)
T 3kya_A          354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN  400 (496)
T ss_dssp             EBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG
T ss_pred             CCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC
Confidence            11              113588 78887       679999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.63  E-value=6.8e-14  Score=120.68  Aligned_cols=171  Identities=16%  Similarity=0.175  Sum_probs=124.4

Q ss_pred             CcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceE-Eeee-ecCcCccCeEEcC-CCcEEEEeCC--CceEEEeCCC-
Q 022967           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE-NWKL-IGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEEG-  146 (289)
Q Consensus        75 ~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~-~~~~-~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~~~~g-  146 (289)
                      .+..|+++++|+ +++||+++ .+++|.+++.+|+.. .+.. ....|. ++++|+ +|.||+++.+  ..|++++.+| 
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcc-eEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            367899999996 78899766 678999999877543 3333 356799 999996 6789999975  4689998777 


Q ss_pred             -eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC---CCCCcc
Q 022967          147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFAN  221 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~---~~~~p~  221 (289)
                       .+.+..    ..+..|++|+++++ ++||++|..                 .++|.++|.++...+.+..   .+..|.
T Consensus       154 ~~~~~~~----~~~~~P~gla~d~~~~~lY~~D~~-----------------~~~I~~~d~dg~~~~~~~~~~~~~~~P~  212 (316)
T 1ijq_A          154 DIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHPF  212 (316)
T ss_dssp             CEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             CeEEEEE----CCCCCceEEEEeccCCEEEEEECC-----------------CCeEEEEecCCCceEEEeecCCccCCcE
Confidence             444432    23568999999974 689999964                 4689999998665555543   467899


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  272 (289)
                      |++++  ++.+||++..+++|.+++..+.+.  .+.+...+ ..|.+|+++
T Consensus       213 giav~--~~~ly~~d~~~~~V~~~~~~~g~~--~~~i~~~~-~~p~~i~v~  258 (316)
T 1ijq_A          213 SLAVF--EDKVFWTDIINEAIFSANRLTGSD--VNLLAENL-LSPEDMVLF  258 (316)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTTCCC--CEEEECSC-SCCCCEEEE
T ss_pred             EEEEE--CCEEEEEECCCCeEEEEeCCCCcc--eEEEecCC-CCceEEEEe
Confidence            99996  467999999999999999742221  22232222 246666655

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=1.4e-14  Score=123.66  Aligned_cols=182  Identities=8%  Similarity=0.020  Sum_probs=128.2

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEec-CCceEEeeee-----cCcCccCeEEcCCCcEEEEeCC------------Cc
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI-----GGDTLLGITTTQENEILVCDAD------------KG  138 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~g~l~v~~~~------------~~  138 (289)
                      ..|.+++++++|+||++. +++|++++. +|+++.+...     ...+. ++++|++|++|+++..            .+
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcE
Confidence            568899999999999887 567999994 5666655432     13466 8999999999998621            35


Q ss_pred             eEEEeCCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeC--CCCeEE---
Q 022967          139 LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETS---  211 (289)
Q Consensus       139 i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~---  211 (289)
                      +++++.+| ...+...     +..++++++++||+ ||+++..                 .++|++++.  .++...   
T Consensus       132 l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~-----------------~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSL-----------------SYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             EEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEGG-----------------GTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecCC-----------------CCcEEEEeccCCCCcccCcE
Confidence            89998667 5544332     34688999999995 9998753                 367888764  445432   


Q ss_pred             Eee---CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCC-CEEEEEeCccc
Q 022967          212 ILL---DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDG-SFWIAILQVFI  286 (289)
Q Consensus       212 ~~~---~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G-~lwv~~~~g~i  286 (289)
                      .+.   .....|.|++++++|+ ||++....++|.+|+.++.++.   ..+......|.++++. +++ .|||++...++
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~---~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~  265 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRL---QTVKLPVDKTTSCCFGGKNYSEMYVTCARDGM  265 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEE---EEEECSSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred             EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEE---EEEECCCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence            222   2235789999999996 9999988889999998632221   1121111467888986 454 79999987664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.62  E-value=1.4e-14  Score=130.92  Aligned_cols=171  Identities=15%  Similarity=0.129  Sum_probs=119.4

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEecCC-eEEEEec-CCceEEeee---------ecCcCccCeEEcC----CCcEE
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDG-WIKRLHK-NGTWENWKL---------IGGDTLLGITTTQ----ENEIL  131 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g-~i~~~~~-~g~~~~~~~---------~~~~p~~gl~~d~----~g~l~  131 (289)
                      .++.+..+ +..|++|+++++|+|||++..+ +|++++. +|+.+.+..         ..+.++ ||++++    ++.||
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            45666666 7999999999999999999775 7999984 576655432         123467 999998    68899


Q ss_pred             EEeCC-------------CceEEEe-CC--C-e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccc-
Q 022967          132 VCDAD-------------KGLLKVT-EE--G-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD-  190 (289)
Q Consensus       132 v~~~~-------------~~i~~~~-~~--g-~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~-  190 (289)
                      ++...             .+|+|++ .+  + +   +++....+....+.+.+|++++||+|||+.+.......+..+. 
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            98742             3688887 32  2 2   3444434444467789999999999999976421100000000 


Q ss_pred             --------------cceecCCCEEEEEeCCCC-----------eEEEeeCCCCCcceEEEecCCCEEEEEeCCCC
Q 022967          191 --------------LLEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (289)
Q Consensus       191 --------------~~~~~~~g~i~~~~~~~~-----------~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~  240 (289)
                                    --.....|+|+|+++++.           ..++++.++++|.|++|+++++ ||++|.+.+
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                          000123589999999865           4577889999999999999766 999997654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=6.1e-14  Score=120.06  Aligned_cols=181  Identities=11%  Similarity=0.091  Sum_probs=127.5

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeee-----cCcCccCeEEcCCCcEEEEeC--------------
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLI-----GGDTLLGITTTQENEILVCDA--------------  135 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~l~v~~~--------------  135 (289)
                      ...|.++++|++|+||+++ .+++|.+++.+|+.+.+...     ...|. +++++++|++|++|.              
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~  163 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPAD  163 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCccccccccccc
Confidence            3568999999999999877 45789999977887665432     23577 999999999999752              


Q ss_pred             ----CCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          136 ----DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       136 ----~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                          ..+|++++ .+| ++.+. .     +..++++++++||+ ||+++....            ....+.|++++.+++
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSVEITAFAWRDG  225 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETT
T ss_pred             cccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCc------------CCCCCEEEEEEecCC
Confidence                14699999 467 66553 2     34688999999996 999875310            001257888886644


Q ss_pred             eE---EEeeC-CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeC
Q 022967          209 ET---SILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQ  283 (289)
Q Consensus       209 ~~---~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~  283 (289)
                      .+   +.+.. ....|.|++++++|+ ||++.  ..+|.+|+.++..+.   .+  ..+..|.+++++.++ .||+++..
T Consensus       226 ~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~~~---~~--~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          226 ALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQLLG---HI--PTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCEEE---EE--ECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCEEE---EE--ECCCceeEEEEeCCCCEEEEEcCC
Confidence            32   12222 245689999999999 99986  467999987654322   22  122358889987766 69999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.59  E-value=1.4e-13  Score=122.59  Aligned_cols=151  Identities=14%  Similarity=0.147  Sum_probs=116.2

Q ss_pred             cCCcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEE-ee-eecCcCccCeEEcC-CCcEEEEeCC--CceEEEeCC
Q 022967           73 EGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWEN-WK-LIGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEE  145 (289)
Q Consensus        73 ~~~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~-~~-~~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~~~~  145 (289)
                      ...+..|++|++|. +++||+++ .+++|.+++.+|+... +. .....|. +|++|+ .|.||+++.+  ..|++++.+
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~-~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEE-EEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcc-eEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            33478899999998 88999766 6789999998776433 32 2445799 999997 6789999964  469999966


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC---CCCC
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFF  219 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~---~~~~  219 (289)
                      |  .+.+..    ..+..|++|++|+ +++|||+|..                 ...|+++|.++...+.+..   .+..
T Consensus       234 G~~~~~~~~----~~l~~P~glavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~l~~  292 (400)
T 3p5b_L          234 GVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAH  292 (400)
T ss_dssp             SCSCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCCEEEEECSSTTSS
T ss_pred             CCccEEEEE----CCCCceEEEEEEeCCCEEEEEECC-----------------CCEEEEEeCCCCccEEEEeCCCCCCC
Confidence            7  444433    2356899999997 5689999964                 4689999998766555543   3678


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      |.||+++  ++.|||++..+++|++++.
T Consensus       293 P~gl~v~--~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          293 PFSLAVF--EDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             EEEEEEE--TTEEEEEESSSCSEEEEES
T ss_pred             CEEEEEe--CCEEEEecCCCCeEEEEEc
Confidence            8999884  5679999999999999994

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=9e-13  Score=113.96  Aligned_cols=189  Identities=14%  Similarity=0.104  Sum_probs=129.4

Q ss_pred             CCcceEEEccCC-CEEEEec-------CCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-C
Q 022967           77 NGPEDVCVDRNG-VLYTATR-------DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E  144 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~v~~~-------~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~  144 (289)
                      .+|..++++++| .+|++..       ++.|+.++ .+++..........+. +++++++|+ +|+++.. ..+..+| .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            568899999976 5777663       46799999 4566555445566788 999999987 8888765 5688888 5


Q ss_pred             CC-e-EEEEeccCC----ccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C
Q 022967          145 EG-V-TVLASHVNG----SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S  216 (289)
Q Consensus       145 ~g-~-~~~~~~~~~----~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~  216 (289)
                      ++ . ..+......    .....+.+++++++|+ +|+++..                ..+.|+.+|.++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            66 3 333221110    0112367899999985 8887632                23679999998887665554 4


Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCC-EEEEEeC
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      ...|.++++++|++.+|+++. .+.|++||..+.+......... .....+.+++++.+|+ +|++...
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred             CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence            556899999999999999976 5889999976543221111111 1234567799999886 7887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.4e-13  Score=124.46  Aligned_cols=156  Identities=13%  Similarity=0.120  Sum_probs=115.5

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEec--------CCce------------EEeeee--cCcCccCeEEcCCCc-E
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHK--------NGTW------------ENWKLI--GGDTLLGITTTQENE-I  130 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~--------~g~~------------~~~~~~--~~~p~~gl~~d~~g~-l  130 (289)
                      +.+|.++++++ +|.||+.+ .+++|++++.        ++..            ..+...  ...|. +|+++++|+ |
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~-~ia~~p~G~~l  324 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEF-QIFIHPTGKYA  324 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCE-EEEECTTSSEE
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCce-EEEEcCCCCEE
Confidence            57899999999 88999776 6788999994        4543            122211  24577 999999998 8


Q ss_pred             EEEeCC-CceEEEeCCC----e---EEEEec--cC--------CccccCcc-ceEEc-------CCCcEEEeeCCCccCc
Q 022967          131 LVCDAD-KGLLKVTEEG----V---TVLASH--VN--------GSRINLAD-DLIAA-------TDGSIYFSVASTKFGL  184 (289)
Q Consensus       131 ~v~~~~-~~i~~~~~~g----~---~~~~~~--~~--------~~~~~~~~-~l~~~-------~dG~lyv~~~~~~~~~  184 (289)
                      ||+|.. +.|++++.++    +   ..++..  ..        ...++.|. +++++       .+|.|||+|..     
T Consensus       325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-----  399 (496)
T 3kya_A          325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-----  399 (496)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG-----
T ss_pred             EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC-----
Confidence            999976 6788877333    2   344432  11        12567898 78887       67899999964     


Q ss_pred             cccccccceecCCCEEEEEeCCCCeEEEeeC------------------------CCCCcceEEEecCCCEEEEEeCCCC
Q 022967          185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLD------------------------SLFFANGVALSKDEDYLVVCETFKF  240 (289)
Q Consensus       185 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~------------------------~~~~p~gl~~~~d~~~l~v~~~~~~  240 (289)
                                  +.+|.+++++ |.+..++.                        .+..|.||+++++++.|||+|+.++
T Consensus       400 ------------N~rIr~i~~~-G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~  466 (496)
T 3kya_A          400 ------------NFCVRKVTPE-GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH  466 (496)
T ss_dssp             ------------GTEEEEECTT-CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             ------------CCEEEEEeCC-CCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence                        4689999976 56655531                        1567999999998556999999999


Q ss_pred             eEEEEEecCC
Q 022967          241 RCLKYWLKGE  250 (289)
Q Consensus       241 ~i~~~~~~~~  250 (289)
                      +|++++++++
T Consensus       467 rIrki~~~~~  476 (496)
T 3kya_A          467 TIRTISMEQE  476 (496)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEECCCC
Confidence            9999998864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.57  E-value=9.4e-13  Score=113.83  Aligned_cols=182  Identities=13%  Similarity=0.184  Sum_probs=128.8

Q ss_pred             cceEEEccCCC-EEEEe--cCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGV-LYTAT--RDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~-l~v~~--~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~  150 (289)
                      |++++++++|+ +|++.  .++.|+.++ .+++...... ....+. +++++++|+ ||+++....++.+| .++ ....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST-GLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC-CCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc-eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            78899999876 77776  368899999 4555443333 344578 999999886 78887666788999 666 3322


Q ss_pred             EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ...........+.+++++|||+ +|+++..                 .+.|+.+|.++++...... ...+.++++++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~dg  283 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNILAKVA-APESLAVLFNPAR  283 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCEEEEEE-CSSCCCEEEETTT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEE-cCCCceEEECCCC
Confidence            2211111234577899999986 8887643                 3689999998776544332 2346789999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      +++|+++...+.|.+||..+.+..  ..+  ..+..|.+++++.+|+ +|++...
T Consensus       284 ~~l~v~~~~~~~v~~~d~~~~~~~--~~~--~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          284 NEAYVTHRQAGKVSVIDAKSYKVV--KTF--DTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEE--EEE--ECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEECCCCeEE--EEE--ecCCCCCeEEEcCCCCEEEEEEcc
Confidence            999999988899999997653221  112  2235688999999996 8998866

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=2.6e-13  Score=118.26  Aligned_cols=186  Identities=12%  Similarity=0.178  Sum_probs=127.5

Q ss_pred             CcCCcceEEEccCCCEEEEec------CCeEEEEe-cCCce-EEeeee------cCcCccCeEEcC-CCcEEEEeC---C
Q 022967           75 ILNGPEDVCVDRNGVLYTATR------DGWIKRLH-KNGTW-ENWKLI------GGDTLLGITTTQ-ENEILVCDA---D  136 (289)
Q Consensus        75 ~~~~p~~l~~d~~g~l~v~~~------~g~i~~~~-~~g~~-~~~~~~------~~~p~~gl~~d~-~g~l~v~~~---~  136 (289)
                      .+..|.++++|++|+||+.+.      .++|++++ .+|+. ..+...      ...+. ++++|+ +|.+|+++.   .
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccCC
Confidence            367899999999999997663      47899999 45763 333221      12467 999995 578999986   3


Q ss_pred             -CceEEEe-CCC-eEEEEec------------cCCccc-------------cCccceEEcCCC-cEEEeeCCCccCcccc
Q 022967          137 -KGLLKVT-EEG-VTVLASH------------VNGSRI-------------NLADDLIAATDG-SIYFSVASTKFGLHNW  187 (289)
Q Consensus       137 -~~i~~~~-~~g-~~~~~~~------------~~~~~~-------------~~~~~l~~~~dG-~lyv~~~~~~~~~~~~  187 (289)
                       .+|++++ .+| ...+...            ..+..+             ..+++|++++|| .||+++..        
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--------  215 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--------  215 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--------
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--------
Confidence             6788999 556 4333211            011111             246899999999 59998764        


Q ss_pred             ccccceecCCCEEEEEeCC---CCe---------EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe-cCCCCcc
Q 022967          188 GLDLLEAKPHGKLLKYDPS---LNE---------TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL-KGESKEQ  254 (289)
Q Consensus       188 ~~~~~~~~~~g~i~~~~~~---~~~---------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~-~~~~~~~  254 (289)
                               ...|++++.+   .+.         +... .....|.|++++++|+ +|+++...++|.+|+. ++.    
T Consensus       216 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~----  280 (343)
T 2qe8_A          216 ---------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA----  280 (343)
T ss_dssp             ---------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE----
T ss_pred             ---------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC----
Confidence                     2478988742   111         1111 1234789999999986 9999999999999997 442    


Q ss_pred             eeeeec-cCCCCCCceeeCCCCCEEEEEeCc
Q 022967          255 TEIFVE-NLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       255 ~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ...... .....|.+++++.+|++||++...
T Consensus       281 ~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          281 YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             EEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            222221 112579999999999999998643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=6.9e-13  Score=114.81  Aligned_cols=183  Identities=10%  Similarity=0.032  Sum_probs=128.7

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC-eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g-~~~~~  151 (289)
                      ..|++++++ ++++|++. .++.|.++| .+++..........|. +++++++|++|+++ ....|.++| .++ +....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            457889886 67899766 568999999 4576543334456788 99998788999998 557799999 666 43222


Q ss_pred             e-ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          152 S-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       152 ~-~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                      . .........|.+|++ .++++|+++..                ..+.|.++|+++++..........|++++++++|+
T Consensus       122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~  184 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK  184 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE
T ss_pred             EcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC
Confidence            2 111122346889999 67899999742                13689999999887665444456799999999988


Q ss_pred             EEEEEeCCC----------CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEE
Q 022967          231 YLVVCETFK----------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAI  281 (289)
Q Consensus       231 ~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~  281 (289)
                       +|++..+.          +.|+++|.++.++..  .+.......|.+++++.+| .+|++.
T Consensus       185 -l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          185 -MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             -EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             -EEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEc
Confidence             88887765          789999976543221  1211112469999999866 677764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=4.9e-13  Score=115.29  Aligned_cols=181  Identities=14%  Similarity=0.140  Sum_probs=125.0

Q ss_pred             CCcceEEEccCCCEEEEecC-----CeEEEEecCC-ceEEeee---ecCcCccCeEEcCCCcEEEEeCC-------CceE
Q 022967           77 NGPEDVCVDRNGVLYTATRD-----GWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDAD-------KGLL  140 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~-----g~i~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~-------~~i~  140 (289)
                      ..|.+++++++|++|++...     ++|++++.++ ....+..   ....+. +++++++|++|+++..       .+|+
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCEEEEeccccccCCCceEE
Confidence            56899999999999987743     4899999544 4442321   223567 8999999999999763       4699


Q ss_pred             EEeC-CC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeEEEe--
Q 022967          141 KVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETSIL--  213 (289)
Q Consensus       141 ~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~~~--  213 (289)
                      +++. .+ ++.+...     ...++++++++||+ ||+++..                 .+.|++++.++  +....+  
T Consensus       166 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~-----------------~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEEE
T ss_pred             EEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCC-----------------CCeEEEEEecCCCcCcccccc
Confidence            9994 45 5544321     23578999999996 9998642                 35788888742  223211  


Q ss_pred             ---e--CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-----CCCCceeeCCCC-CEEEEEe
Q 022967          214 ---L--DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-----GGPDNIKLAPDG-SFWIAIL  282 (289)
Q Consensus       214 ---~--~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~p~~i~~d~~G-~lwv~~~  282 (289)
                         .  .+...|.+++++++|+ +|+++...++|.+|+.++..+   ..+.....     ..|.+++++++| .||+++.
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~~---~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPI---GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEE---EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCCEE---EEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence               1  1234789999999988 999987778999998754322   22211110     158899998886 8999987


Q ss_pred             Cc
Q 022967          283 QV  284 (289)
Q Consensus       283 ~g  284 (289)
                      .+
T Consensus       300 ~g  301 (333)
T 2dg1_A          300 DI  301 (333)
T ss_dssp             CG
T ss_pred             cc
Confidence            65

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.53  E-value=2.8e-12  Score=111.19  Aligned_cols=189  Identities=14%  Similarity=0.199  Sum_probs=124.9

Q ss_pred             cCCcceEEEccCCCEEEEec---CCeEEEEe-cCCceEEee---eecCcCccCeEEcCCCc-EEEEeCC-CceEEEe--C
Q 022967           76 LNGPEDVCVDRNGVLYTATR---DGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--E  144 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~---~g~i~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~--~  144 (289)
                      ...|..++++++|+||+...   ++.|+.++ .+|+.+.+.   .....|. +++++++|+ ||+++.. ..+..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            47799999999999997664   57899998 456544332   2456788 999999997 7887744 3455555  4


Q ss_pred             CC-eEEEEec-cCCc------cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-CCeEEEe--
Q 022967          145 EG-VTVLASH-VNGS------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSIL--  213 (289)
Q Consensus       145 ~g-~~~~~~~-~~~~------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~--  213 (289)
                      +| .+.+... ..+.      ....+..++++|||++|+++..                 .+.|+.++.+ ++++...  
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeee
Confidence            55 4443321 1111      1224668999999999888753                 3466666655 4554432  


Q ss_pred             --eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeeccCC------CCCCceeeCCCCC-EEEEEe
Q 022967          214 --LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLP------GGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       214 --~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~------~~p~~i~~d~~G~-lwv~~~  282 (289)
                        ......|.+++|+|||+++|+++...+.|.+|+++..  .+....... ..+      ..|.+++++++|+ +|++..
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence              1233468889999999999999988899999988742  221111111 111      2366799999996 778765


Q ss_pred             C
Q 022967          283 Q  283 (289)
Q Consensus       283 ~  283 (289)
                      .
T Consensus       260 ~  260 (347)
T 3hfq_A          260 G  260 (347)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.53  E-value=6e-13  Score=127.52  Aligned_cols=176  Identities=14%  Similarity=0.115  Sum_probs=126.1

Q ss_pred             EEEccCCCEEEEecCCeEEEEecCC-ceEEeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC------eEEEEe
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG------VTVLAS  152 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g------~~~~~~  152 (289)
                      .+++....|+++.. ..|.+++.++ ....+......+. +|++|. +++||+++.. +.|++++.+|      .+.++.
T Consensus       390 ~~~~~~p~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          390 KAVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EETTSCCEEEEECB-SSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             eecccccccccccc-cceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            34444445666554 4588887443 4555555567788 999996 6789999976 4588887433      222222


Q ss_pred             ccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~  230 (289)
                          ..+..|.+|++|..+ +|||++..                 .++|.+++.++...+.+. ..+..|.+|++++.++
T Consensus       468 ----~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          468 ----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  526 (791)
T ss_dssp             ----SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             ----cCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC
Confidence                235679999999865 89999965                 478999999876655554 5788899999999988


Q ss_pred             EEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCCCEEEEEeC
Q 022967          231 YLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAILQ  283 (289)
Q Consensus       231 ~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~lwv~~~~  283 (289)
                      .|||+|.+. .+|++++++|..   ...++...-..|.+|++| .+|+||++...
T Consensus       527 ~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             EEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence            899999876 899999998743   223333223579999999 56789999754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.53  E-value=4.5e-12  Score=109.86  Aligned_cols=190  Identities=16%  Similarity=0.133  Sum_probs=123.4

Q ss_pred             cCCcceEEEccCCC-EEEEe-cCCeEEEEe--cCCceEEeeeec------------CcCccCeEEcCCCcEEEEeCCC-c
Q 022967           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWKLIG------------GDTLLGITTTQENEILVCDADK-G  138 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g~~~~~~~~~------------~~p~~gl~~d~~g~l~v~~~~~-~  138 (289)
                      ...|.+++++++|+ ||++. .++.|..++  .+|....+....            ..+. +++++++|++|+++... .
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            46799999999987 77776 668888887  456554332211            1245 69999999999988653 4


Q ss_pred             eEEEe-C-CC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          139 LLKVT-E-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       139 i~~~~-~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                      +..++ . +| +..+... .......+.+++++|||+ +|+++...               ..-.+|.++..+++.+...
T Consensus       164 v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~~~g~~~~~~  227 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS---------------SQIASLKYDTQTGAFTQLG  227 (347)
T ss_dssp             EEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC---------------CEEEEEEecCCCCceEEee
Confidence            76677 4 56 5443221 111123577899999997 88876431               1123555565456654321


Q ss_pred             ---CC------CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          215 ---DS------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       215 ---~~------~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                         ..      ...+.+++|+|||++||+++...+.|.+|+++.. .......+. .....|.+++++++|+ ||++...
T Consensus       228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETT
T ss_pred             eeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcC
Confidence               11      1347789999999999999988899999998632 222122221 2234689999999996 7777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.52  E-value=4.7e-12  Score=108.68  Aligned_cols=176  Identities=12%  Similarity=0.125  Sum_probs=118.5

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEecCCceEEeeee-cCcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCc
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGS  157 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~  157 (289)
                      .+++++++|+||+++.++.|++++.+|+....... ..... .+.+|.+|.||++.  .++++++.+| ...... ..  
T Consensus       140 ~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~-~~--  213 (330)
T 3hxj_A          140 ATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITS-AASIGKDGTIYFGS--DKVYAINPDGTEKWNFY-AG--  213 (330)
T ss_dssp             SCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTCCEEEES--SSEEEECTTSCEEEEEC-CS--
T ss_pred             eeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCcee-eeEEcCCCEEEEEe--CEEEEECCCCcEEEEEc-cC--
Confidence            44678888999999888889999966654322222 22344 78888889999988  7899999666 322211 11  


Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                       ......++++++|+||++...                  ++|+++++++.....+.........+.+++++. ||++. 
T Consensus       214 -~~~~~~~~~~~~g~l~v~t~~------------------~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-  272 (330)
T 3hxj_A          214 -YWTVTRPAISEDGTIYVTSLD------------------GHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-  272 (330)
T ss_dssp             -SCCCSCCEECTTSCEEEEETT------------------TEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEEC-
T ss_pred             -CcceeceEECCCCeEEEEcCC------------------CeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEec-
Confidence             134668889999999998643                  689999887655544444333445567776665 99884 


Q ss_pred             CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ..+.|++|+.++...   ..+. ........+.+|.+|++|+++.+|.+
T Consensus       273 ~~ggl~~~d~~g~~~---~~~~-~~~~~~~~~~~d~~g~l~~gt~~G~~  317 (330)
T 3hxj_A          273 YDGHLYAINPDGTEK---WNFE-TGSWIIATPVIDENGTIYFGTRNGKF  317 (330)
T ss_dssp             TTCEEEEECTTSCEE---EEEE-CSSCCCSCCEECTTCCEEEECTTSCE
T ss_pred             CCCCEEEECCCCcEE---EEEE-cCCccccceEEcCCCEEEEEcCCCeE
Confidence            456899998543211   1111 11234567889999999999988765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=8.1e-13  Score=114.30  Aligned_cols=180  Identities=11%  Similarity=0.076  Sum_probs=125.8

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeec-----CcCccCeEEcCCCcEEEEeCC-------CceEEEe
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG-----GDTLLGITTTQENEILVCDAD-------KGLLKVT  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-----~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~  143 (289)
                      ..+.+++++++|++|+++. ++|++++ .+|++..+....     ..+. ++++|++|++|+++..       .+|++++
T Consensus        90 ~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            4578899999999998874 4599999 467766554321     2456 8999999999998742       4699998


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CC-eE---EEee-
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN-ET---SILL-  214 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~-~~---~~~~-  214 (289)
                       +| ++.+...     ...++++++++||+ +|+++..                 .+.|++++.+  ++ ..   ..+. 
T Consensus       168 -~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~  224 (326)
T 2ghs_A          168 -KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFID  224 (326)
T ss_dssp             -TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             -CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEE
Confidence             77 6554322     23578999999995 8998753                 3678999864  45 31   2221 


Q ss_pred             --CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeC-CCC-CEEEEEeCccc
Q 022967          215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDG-SFWIAILQVFI  286 (289)
Q Consensus       215 --~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~G-~lwv~~~~g~i  286 (289)
                        .....|.+++++++|+ +|++....++|++|+.++...   ..+. .....|.+++++ +++ .|||++..++.
T Consensus       225 ~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~~---~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~~~  295 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHI---ARYE-VPGKQTTCPAFIGPDASRLLVTSAREHL  295 (326)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEE---EEEE-CSCSBEEEEEEESTTSCEEEEEEBCTTC
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCEE---EEEE-CCCCCcEEEEEecCCCCEEEEEecCCCC
Confidence              1235689999999997 999987778999998754321   1121 112357788887 564 79999877653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.51  E-value=6.5e-13  Score=119.95  Aligned_cols=166  Identities=16%  Similarity=0.260  Sum_probs=110.4

Q ss_pred             eeEeccCCcCCcceEEEccCCC--EEEEecCCeEEEEecCCce--EEe-------eee-----cCcCccCeEEcCC----
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKNGTW--ENW-------KLI-----GGDTLLGITTTQE----  127 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~--l~v~~~~g~i~~~~~~g~~--~~~-------~~~-----~~~p~~gl~~d~~----  127 (289)
                      ++.++.+ +..|+.|+++++|.  |||+...|+|++++.+|..  +.+       ...     .+..+ ||+++++    
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCC
Confidence            4566666 89999999999885  9999999999999866542  111       111     23456 8999975    


Q ss_pred             CcEEEEeCC-------------CceEEEe-CC--------C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCc
Q 022967          128 NEILVCDAD-------------KGLLKVT-EE--------G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL  184 (289)
Q Consensus       128 g~l~v~~~~-------------~~i~~~~-~~--------g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~  184 (289)
                      +.|||+...             .+|.|+. .+        . .+++.........+....|+++|||.|||+.+..-...
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~  163 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITL  163 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCH
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCC
Confidence            789997421             2576765 21        1 23443322223446677899999999999977521100


Q ss_pred             --cccccccceecCCCEEEEEeCCCC--------------------eEEEeeCCCCCcceEEEecCC-----C-EEEEEe
Q 022967          185 --HNWGLDLLEAKPHGKLLKYDPSLN--------------------ETSILLDSLFFANGVALSKDE-----D-YLVVCE  236 (289)
Q Consensus       185 --~~~~~~~~~~~~~g~i~~~~~~~~--------------------~~~~~~~~~~~p~gl~~~~d~-----~-~l~v~~  236 (289)
                        ....++  .....|.|+|++++++                    ..++++.++++|.|++|+++.     + ++|++|
T Consensus       164 ~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D  241 (463)
T 2wg3_C          164 DDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD  241 (463)
T ss_dssp             HHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEEC
T ss_pred             CccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecc
Confidence              000001  1234689999999963                    346788999999999999973     2 677787


Q ss_pred             C
Q 022967          237 T  237 (289)
Q Consensus       237 ~  237 (289)
                      .
T Consensus       242 ~  242 (463)
T 2wg3_C          242 S  242 (463)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.50  E-value=2.1e-12  Score=110.60  Aligned_cols=182  Identities=14%  Similarity=0.112  Sum_probs=125.0

Q ss_pred             CCcceEEEccCCCEEEEecC---CeEEEEe-cCCceEEeeee--cCcCccCeEEcCCCcEEEEeCC-CceEEEeC-CC-e
Q 022967           77 NGPEDVCVDRNGVLYTATRD---GWIKRLH-KNGTWENWKLI--GGDTLLGITTTQENEILVCDAD-KGLLKVTE-EG-V  147 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~---g~i~~~~-~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~-~g-~  147 (289)
                      ..|.+++++++|+||+++..   .+|++++ .+|++..+...  ...+. |++...++++|+++.. ..|++++. .+ .
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC-cccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            46999999999999988732   3588887 67887665442  23456 8887777789999853 56999994 44 3


Q ss_pred             EEEEe-c-----cCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCC-Ce---EEEeeCC
Q 022967          148 TVLAS-H-----VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE---TSILLDS  216 (289)
Q Consensus       148 ~~~~~-~-----~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~---~~~~~~~  216 (289)
                      ++... .     .....+..+++|  ++|| .||+++..                 .++|++++.++ ++   .+.+.. 
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-----------------~~~I~~~~~~~~g~~~~~~~~~~-  210 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-----------------KMLLLRIPVDSTDKPGEPEIFVE-  210 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-----------------TTEEEEEEBCTTSCBCCCEEEEE-
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-----------------CCEEEEEEeCCCCCCCccEEEec-
Confidence            33211 1     111234578888  6666 79999864                 46899999764 32   223322 


Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCceeeC---CC-CCEEEEEeC
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLA---PD-GSFWIAILQ  283 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d---~~-G~lwv~~~~  283 (289)
                      +..|.|++++++|+ +|+++..+++|.+|+.+|. ...... + ..+ ..|.+++++   ++ +.|||++..
T Consensus       211 ~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~-~~~~~~-~-~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          211 QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS-TTIIAQ-A-EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC-EEEEEC-G-GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC-EEEEee-c-ccccCCceEEEEecccCCCCEEEEECCC
Confidence            35799999999997 8999999999999987653 111101 1 122 569999997   56 589999875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.50  E-value=1.2e-11  Score=102.69  Aligned_cols=191  Identities=15%  Similarity=0.145  Sum_probs=129.1

Q ss_pred             cCCcceEEEcc-CCCEE-EEecCCeEEEEecCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEe--CCC-e
Q 022967           76 LNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVT--EEG-V  147 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~--~~g-~  147 (289)
                      ...+.++++++ ++.|| +.+.+++|++++.+|++..-..  ....+- ||+++.+|.+||++.. ++++.++  .++ +
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            46799999998 46799 5678899999997787654332  234567 9999999999898754 5677776  344 3


Q ss_pred             EEEEec-cC---CccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeC--CCCeEEEee------
Q 022967          148 TVLASH-VN---GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILL------  214 (289)
Q Consensus       148 ~~~~~~-~~---~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~~~~~~------  214 (289)
                      ..+... .+   ........+|++++++ +||++...                ....||.++.  .+..+.+..      
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhhcc
Confidence            332211 11   1122345799999977 79998643                1236888872  222333331      


Q ss_pred             -CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---C---CCCCCceeeCCCCCEEEEEeCc
Q 022967          215 -DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN---L---PGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       215 -~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~---~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                       .....+.+++++|..++||+....++.|..+|.+|.-.. .-.+...   +   -..|.||++|.+|++||+.-..
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~-~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n  244 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG-EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN  244 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE-EEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEE-EEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc
Confidence             135578999999999999999999999999998875221 1111111   1   1268999999999999997543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.49  E-value=1.8e-12  Score=125.04  Aligned_cols=184  Identities=11%  Similarity=0.176  Sum_probs=127.8

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeee---------cCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI---------GGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG  146 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~---------~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g  146 (289)
                      ..+++.|++|+||+++.+++|.+++. .+++..+...         ..... +++.|++|+ ||++..+.|+++++ .++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            45688999999999998888999994 5666655321         12234 788889999 99998778999999 556


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-----C--C
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----L--F  218 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-----~--~  218 (289)
                       ++.+...........+.++..+++|+||++..                   ++|+++++++++++.+...     +  .
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCc
Confidence             66554321112234567899999999999963                   3699999998887766422     1  2


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeee-e-ccCC-CCCCceeeCCCCCEEEEEeCcccc
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF-V-ENLP-GGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~~-~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      ....+..+++++ +|++..  ++|++|+.++... ..... . ..++ .....|..|.+|++|+++.+ |+.
T Consensus       499 ~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~  565 (795)
T 4a2l_A          499 QITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFY  565 (795)
T ss_dssp             CEEEEEECTTCC-EEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEE
T ss_pred             eEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-Cce
Confidence            345677788887 999865  6899999876433 11100 0 0111 23455889999999999986 553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.49  E-value=5.2e-12  Score=110.59  Aligned_cols=186  Identities=11%  Similarity=0.059  Sum_probs=122.3

Q ss_pred             cCCcceEEEccC----CCEEEEecC--------CeEEEEecCCc------eEEeee--e---cCcCccCeEEcCCCcEEE
Q 022967           76 LNGPEDVCVDRN----GVLYTATRD--------GWIKRLHKNGT------WENWKL--I---GGDTLLGITTTQENEILV  132 (289)
Q Consensus        76 ~~~p~~l~~d~~----g~l~v~~~~--------g~i~~~~~~g~------~~~~~~--~---~~~p~~gl~~d~~g~l~v  132 (289)
                      ..+|.+|+++++    |.||++...        ++|.+++.++.      .+.+..  .   ...+. +|++++||+||+
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~-~l~~~pDG~Lyv  150 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG-RIRFGPDGMLYI  150 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC-CEEECTTSCEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc-eEEECCCCcEEE
Confidence            467999999996    899987642        68999984432      222211  1   12466 899999999999


Q ss_pred             EeCC--------------CceEEEeCCC-e---------EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCcccc
Q 022967          133 CDAD--------------KGLLKVTEEG-V---------TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNW  187 (289)
Q Consensus       133 ~~~~--------------~~i~~~~~~g-~---------~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~  187 (289)
                      +...              ..|+|++.+| +         +++.     ..++.|.+|++++ +|+||+++.....     
T Consensus       151 t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-----~G~rnp~Gla~d~~~g~l~v~d~g~~~-----  220 (354)
T 3a9g_A          151 TTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-----YGHRNPQGIDWHRASGVMVATEHGPVG-----  220 (354)
T ss_dssp             ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-----ECCSCCCEEEECTTTCCEEEEECCSSS-----
T ss_pred             EECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-----EccCCcceEEEeCCCCCEEEEecCCCC-----
Confidence            8531              2588888656 3         2222     1356799999999 7999999865210     


Q ss_pred             ccccceecCCCEEEEEeCCC--------------CeE---EEeeCCCCCcceEEEe-------cCCCEEEEEeCCCCeEE
Q 022967          188 GLDLLEAKPHGKLLKYDPSL--------------NET---SILLDSLFFANGVALS-------KDEDYLVVCETFKFRCL  243 (289)
Q Consensus       188 ~~~~~~~~~~g~i~~~~~~~--------------~~~---~~~~~~~~~p~gl~~~-------~d~~~l~v~~~~~~~i~  243 (289)
                               ...|.++.+..              +..   ..+......|.|+++.       .+| .+|+++...++|+
T Consensus       221 ---------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~  290 (354)
T 3a9g_A          221 ---------HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLA  290 (354)
T ss_dssp             ---------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEE
T ss_pred             ---------CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEE
Confidence                     11233333210              000   0110223468899984       355 5999999999999


Q ss_pred             EEEecCC-CCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          244 KYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       244 ~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++++++. .....+.+.....+.|.+++++.||.|||++.
T Consensus       291 ~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          291 AVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            9999753 23223444433346799999999999999996

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=1.4e-12  Score=125.66  Aligned_cols=186  Identities=12%  Similarity=0.140  Sum_probs=125.3

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeee----------cCcCccCeEEcCCCcEEEEeCCCceEEEeC-CC
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI----------GGDTLLGITTTQENEILVCDADKGLLKVTE-EG  146 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~----------~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~-~g  146 (289)
                      ..++..|++|+||+++.+++|.+++. .+.+..+...          ..... +++.|++|+||++....||++++. .+
T Consensus       315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred             EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence            45688999999999998888999984 4455544321          12234 788899999999987789999994 34


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC---CCCcce
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANG  222 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~---~~~p~g  222 (289)
                       ++.+.. ........+.+|+.+++|+||++...                  ++|+++++++++++.+...   ......
T Consensus       394 ~~~~~~~-~~~~~~~~v~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          394 VAIYNKE-NRELLSNSVLCSLKDSEGNLWFGTYL------------------GNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEECC------CCCSBEEEEEECTTSCEEEEETT------------------EEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             eEEEccC-CCCCCCcceEEEEECCCCCEEEEecc------------------CCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence             443321 11122245678999999999998642                  5799999988887766431   223455


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-cc-CCCCCCceeeCCCCCEEEEEeCcccc
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-EN-LPGGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      +..+++++ ||++..  .+|++|+..+.......... .. .......|++|.+|+||+|+.++|+.
T Consensus       455 i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          455 FYEDKNKK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             EEECTTSE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             EEECCCCC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence            66676665 999854  78999997754432221100 00 12345678999999999999866653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.45  E-value=5.9e-12  Score=121.50  Aligned_cols=185  Identities=12%  Similarity=0.102  Sum_probs=125.5

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeee-------cCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eE
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI-------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT  148 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~-------~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~  148 (289)
                      -.++..|++|+||+++.+++|.+++. .+.+..+...       ..... ++..|++|+||++....||.+++ ..+ ++
T Consensus       312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~-~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~  390 (795)
T 4a2l_A          312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVS-CIVEDKDKNLWIGTNDGGLNLYNPITQRFT  390 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEE-EEEECTTSCEEEEESSSCEEEECTTTCCEE
T ss_pred             EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeE-EEEECCCCCEEEEECCCCeEEEcCCCCcEE
Confidence            45689999999999998888999984 4455544321       12234 78889999999998777999999 556 66


Q ss_pred             EEEeccC----CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-----CC
Q 022967          149 VLASHVN----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----LF  218 (289)
Q Consensus       149 ~~~~~~~----~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-----~~  218 (289)
                      .+.....    +.....+.+++.+++|+ ||++...                  ++|+++|++++++..+...     ..
T Consensus       391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~------------------~Gl~~~d~~~~~~~~~~~~~~~l~~~  452 (795)
T 4a2l_A          391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA------------------GGLSILHRNSGQVENFNQRNSQLVNE  452 (795)
T ss_dssp             EECCC------CCSCSCEEEEEEETTTTEEEEEETT------------------TEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred             EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc------------------CceeEEeCCCCcEEEeecCCCCcCCC
Confidence            5532210    11234567899999999 9998643                  5799999998887766431     12


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccC-CCCCCceeeCCCCCEEEEEeCccc
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV--ENL-PGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~-~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ....+..+++++ ||++..  .+|++|+.++..........  ..+ ......+..|.+|++|+|+. +|+
T Consensus       453 ~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl  519 (795)
T 4a2l_A          453 NVYAILPDGEGN-LWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL  519 (795)
T ss_dssp             CEEEEEECSSSC-EEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred             eeEEEEECCCCC-EEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence            345567777777 999864  68999997653221111000  011 12345688999999999997 554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=4.8e-12  Score=121.89  Aligned_cols=182  Identities=13%  Similarity=0.091  Sum_probs=125.4

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeee---cCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~---~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      ..+++.|++|+||+++..++|++++. +++++.+...   ..... .+..|++|+||++.. .|+++++ .++ ++.+..
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR-VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE-EEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE-EEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc
Confidence            45688899999999998788999984 4666655421   22344 788899999999987 8999999 556 655433


Q ss_pred             cc-CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCC--CcceEEEec
Q 022967          153 HV-NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLF--FANGVALSK  227 (289)
Q Consensus       153 ~~-~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~--~p~gl~~~~  227 (289)
                      .. .......+.+|+.|++|+||++...                  ++|+++++++++++.+..  ++.  ....+..++
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIGTFG------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS  548 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEEESS------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT
T ss_pred             CcccccccceeEEEEEcCCCCEEEEEcC------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC
Confidence            21 1111245678999999999999742                  469999998887776643  222  235667777


Q ss_pred             CCCEEEEEeCCCCeE-EEEEecCCCCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCc
Q 022967          228 DEDYLVVCETFKFRC-LKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       228 d~~~l~v~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +|+ ||++..  +++ .+|+..+..+..... .+.++ ....++..|++|+||+++..|
T Consensus       549 ~g~-lWi~T~--~Glv~~~d~~~~~~~~~~~-~~gl~~~~i~~i~~d~~g~lW~~t~~G  603 (781)
T 3v9f_A          549 KGQ-MWLATG--EGLVCFPSARNFDYQVFQR-KEGLPNTHIRAISEDKNGNIWASTNTG  603 (781)
T ss_dssp             TSC-EEEEET--TEEEEESCTTTCCCEEECG-GGTCSCCCCCEEEECSSSCEEEECSSC
T ss_pred             CCC-EEEEEC--CCceEEECCCCCcEEEccc-cCCCCCceEEEEEECCCCCEEEEcCCc
Confidence            777 899854  677 999876544322111 11222 234568899999999999654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.45  E-value=6.5e-12  Score=109.90  Aligned_cols=189  Identities=16%  Similarity=0.144  Sum_probs=121.7

Q ss_pred             cCCcceEEEccC----CCEEEEecC------CeEEEEecCC-c---eEEeee-e------cCcCccCeEEcCCCcEEEEe
Q 022967           76 LNGPEDVCVDRN----GVLYTATRD------GWIKRLHKNG-T---WENWKL-I------GGDTLLGITTTQENEILVCD  134 (289)
Q Consensus        76 ~~~p~~l~~d~~----g~l~v~~~~------g~i~~~~~~g-~---~~~~~~-~------~~~p~~gl~~d~~g~l~v~~  134 (289)
                      ..+|.+|+++++    +.||++...      ++|.+++.++ .   .+.+.. .      ...+. +|++++||.||+++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~-~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGG-RIAFGPDGMLYVTT  152 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCC-CEEECTTSCEEEEC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCc-eEEECCCCCEEEEE
Confidence            568999999997    889987642      7899998543 2   222211 1      12467 99999999999996


Q ss_pred             CC--------------CceEEEeCCC-e--------------EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCc
Q 022967          135 AD--------------KGLLKVTEEG-V--------------TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGL  184 (289)
Q Consensus       135 ~~--------------~~i~~~~~~g-~--------------~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~  184 (289)
                      ..              ..|+|++.+| +              +++.     ..++.|.+|++++ +|+||+++..... .
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-----~G~rnp~g~a~d~~~g~l~v~d~g~~~-~  226 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-----LGHRNPQGLAWHPKTGELFSSEHGPSG-E  226 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-----ECCSEECCCEECTTTCCEEEEEECC----
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-----EcCCCcccEEEECCCCCEEEEEcCCCC-C
Confidence            31              2588888555 2              1111     1245799999999 7999999864210 0


Q ss_pred             cccccccceecCCCEEEEEeCCCCe-----------------EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          185 HNWGLDLLEAKPHGKLLKYDPSLNE-----------------TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       185 ~~~~~~~~~~~~~g~i~~~~~~~~~-----------------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      .    .    .....|.++.+. +.                 ..........|.|+++. +| .+|+++...++|+++++
T Consensus       227 ~----~----~~~dei~~i~~G-~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~  295 (352)
T 2ism_A          227 Q----G----YGHDEVNLIVPG-GNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVL  295 (352)
T ss_dssp             -----------CCCEEEEECTT-CBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEE
T ss_pred             C----C----CCCeEEEEeccC-CcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEE
Confidence            0    0    001234444332 10                 00011223468899994 45 49999999999999998


Q ss_pred             cCCC----CcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          248 KGES----KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       248 ~~~~----~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ++..    ....+.+... .+.|.+++++.||.|||++..
T Consensus       296 ~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          296 EGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEECS
T ss_pred             CCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEeC
Confidence            7543    1223444432 367999999999999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.44  E-value=7.7e-11  Score=101.07  Aligned_cols=182  Identities=9%  Similarity=0.045  Sum_probs=121.7

Q ss_pred             cCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCce-EEeeeecCcCccC-eEEcCCCcEEEEeCCC----ceEEEe-CC
Q 022967           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTW-ENWKLIGGDTLLG-ITTTQENEILVCDADK----GLLKVT-EE  145 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~-~~~~~~~~~p~~g-l~~d~~g~l~v~~~~~----~i~~~~-~~  145 (289)
                      ...| +++++++|+ +|++. .++.|++++ .+++. .........+. . ++++++|+.+++....    .|..++ .+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            4556 999999887 78766 478999999 45664 44444556677 6 9999999744454333    688888 55


Q ss_pred             C-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCC-CEEEEEeCCCCeE----EEeeCCCC
Q 022967          146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPH-GKLLKYDPSLNET----SILLDSLF  218 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~-g~i~~~~~~~~~~----~~~~~~~~  218 (289)
                      + .......     ...+.+++++|||+ +|+++...               .. -.+|.++.+ +..    ........
T Consensus       118 ~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~---------------~~~i~~~~~~~~-g~~~~~~~~~~~~~~  176 (331)
T 3u4y_A          118 NKFISTIPI-----PYDAVGIAISPNGNGLILIDRSS---------------ANTVRRFKIDAD-GVLFDTGQEFISGGT  176 (331)
T ss_dssp             TEEEEEEEC-----CTTEEEEEECTTSSCEEEEEETT---------------TTEEEEEEECTT-CCEEEEEEEEECSSS
T ss_pred             CCeEEEEEC-----CCCccceEECCCCCEEEEEecCC---------------CceEEEEEECCC-CcEeecCCccccCCC
Confidence            6 3222221     13468999999995 88886431               11 235555543 222    12223445


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc-eeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      .|.+++++||++++|++....+.|.+||+.+.+... ...+  .....|.+++++++|+ +|++..
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEEECTTSSEEEEECS
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEEECCCCCEEEEEEc
Confidence            689999999999999999888999999987544311 2222  2235788999999997 777764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.43  E-value=2.8e-12  Score=121.84  Aligned_cols=149  Identities=13%  Similarity=0.141  Sum_probs=111.8

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceE-Eeee-ecCcCccCeEEcC-CCcEEEEeCC--CceEEEeCCC--
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE-NWKL-IGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEEG--  146 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~-~~~~-~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~~~~g--  146 (289)
                      +..|++|++|. +|+||+++ ..++|.+++.+|... .+.. ....|. +|++|+ .|.||+++.+  ..|++++.+|  
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~-giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC-CEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc-eEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            56799999995 78999876 568899999777543 3332 346799 999997 5789999864  4688888666  


Q ss_pred             eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC---CCCCcce
Q 022967          147 VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANG  222 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~---~~~~p~g  222 (289)
                      .+.+..    ..+..|++|+++++ ++|||++..                 .++|.+++.++...+.+..   .+..|.|
T Consensus       531 ~~~l~~----~~l~~PnGlavd~~~~~LY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~~~P~g  589 (699)
T 1n7d_A          531 IYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHPFS  589 (699)
T ss_dssp             CCEESC----SSCSSCCCEEECTTTCCEEEEETT-----------------TTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred             eeEEEe----CCCCCccEEEEeccCCEEEEEecC-----------------CCeEEEEccCCCceEEEEecCCcCCCceE
Confidence            444432    23568999999985 689999964                 4689999998655555543   3678999


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      |+++.  +.|||++..+++|.+++..
T Consensus       590 lavd~--~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          590 LAVFE--DKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CEEET--TEEEEECSTTTCEEEEETT
T ss_pred             eEEEC--CEEEEEeCCCCeEEEEEcc
Confidence            99864  4799999999999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.43  E-value=2.4e-11  Score=104.21  Aligned_cols=188  Identities=11%  Similarity=0.124  Sum_probs=124.9

Q ss_pred             CCcce-EEEccCCC-EEEEecC-C--eEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-Cc-eEEEe--CC
Q 022967           77 NGPED-VCVDRNGV-LYTATRD-G--WIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KG-LLKVT--EE  145 (289)
Q Consensus        77 ~~p~~-l~~d~~g~-l~v~~~~-g--~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~-i~~~~--~~  145 (289)
                      ..|.. ++++++|+ ||++..+ +  .|..++ .+++..........|. +++++++|+ +|+++.. .. +..++  .+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV-GIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE-EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCcc-ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            56888 99999888 4543343 2  899999 4555544444456678 999999996 8888654 55 66555  44


Q ss_pred             C-eEEEE-eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE---EEeeCCCCC
Q 022967          146 G-VTVLA-SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFF  219 (289)
Q Consensus       146 g-~~~~~-~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~~~  219 (289)
                      | +.... ....  ....+.+++++|||+ +|++...                 .+.|..+|.++++.   .........
T Consensus       162 g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          162 GVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLI-----------------GNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             CCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             CcEeecCCcccc--CCCCccceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcccceeeeccCCCC
Confidence            5 32221 1111  123578999999996 8888643                 36788899876664   333344567


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC---C---CCCCceeeCCCCC-EEEEEeCc
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL---P---GGPDNIKLAPDGS-FWIAILQV  284 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~---~~p~~i~~d~~G~-lwv~~~~g  284 (289)
                      |.+++++||++++|++....+.|.+||..+.+......+....   +   ....+++++.+|. +|++...+
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            8999999999999999887888999998754432222222111   1   1124478999985 67877654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.38  E-value=4.6e-11  Score=99.81  Aligned_cols=187  Identities=11%  Similarity=0.013  Sum_probs=124.6

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEec---CCeEEEEe-cCCceEEeeeecC--cCccCeEEcCCCcEEEEeCC-Cce
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR---DGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENEILVCDAD-KGL  139 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~---~g~i~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~l~v~~~~-~~i  139 (289)
                      .+..++-+.-..|++++++++|.||+++.   .+.|.++| .+|+.........  .+. |++++ .++||+++.. +.+
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~-g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLL-NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEETTCSEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEe-CCEEEEEEecCCEE
Confidence            34556656445689999999899998863   57899999 6777654433233  344 67776 4589999865 568


Q ss_pred             EEEe-CCC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-e
Q 022967          140 LKVT-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-L  214 (289)
Q Consensus       140 ~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~  214 (289)
                      +.+| ++.  +..+..   +    .+.+..+.+|| ++|+++++                  +.|+.+|+++.+.... .
T Consensus        89 ~viD~~t~~v~~~i~~---g----~~~g~glt~Dg~~l~vs~gs------------------~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTH---Q----MKDGWGLATDGKILYGSDGT------------------SILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             EEEETTTTEEEEEEEC---C----SSSCCEEEECSSSEEEECSS------------------SEEEEECTTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEEEC---C----CCCeEEEEECCCEEEEECCC------------------CeEEEEECCCCcEEEEEE
Confidence            8899 555  333321   1    13344555665 79999743                  7899999987654332 1


Q ss_pred             C-----CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec----------cCCCCCCceeeCCCC-CEE
Q 022967          215 D-----SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE----------NLPGGPDNIKLAPDG-SFW  278 (289)
Q Consensus       215 ~-----~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~p~~i~~d~~G-~lw  278 (289)
                      -     ....+|++.+. ++ .+|++....+.|.++|.++.+....-.+..          .....|.||+.|++| ++|
T Consensus       144 Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             CEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred             ECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence            1     23468899988 66 699999888999999987654322111100          011367899999887 688


Q ss_pred             EEEe
Q 022967          279 IAIL  282 (289)
Q Consensus       279 v~~~  282 (289)
                      |+.-
T Consensus       222 VTgk  225 (266)
T 2iwa_A          222 VTGK  225 (266)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            8863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.37  E-value=9.7e-11  Score=100.39  Aligned_cols=174  Identities=16%  Similarity=0.155  Sum_probs=116.1

Q ss_pred             EEEccCCCEEEEecCCeEEEEecCCceEEeeeecC-cCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCccc
Q 022967           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG-DTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRI  159 (289)
Q Consensus        82 l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~  159 (289)
                      .+++ +|.||+++.++.|++++.+|+......... ... .+..+++|.||++....++++++.+| ...... ..   .
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-~~---~  176 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-TN---D  176 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-CS---S
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-cC---C
Confidence            3444 889999998899999996666433222222 234 78888899999998768899999447 432222 11   1


Q ss_pred             cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       160 ~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      .....+.++++|+||++.                    ++|+++|+++...............+++++++. +|++.. .
T Consensus       177 ~~~~~~~~d~~g~l~v~t--------------------~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~  234 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--------------------DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-D  234 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--------------------SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEET-T
T ss_pred             CceeeeEEcCCCEEEEEe--------------------CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcC-C
Confidence            245678899999999984                    358899954333323333334456778888776 899854 4


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcccc
Q 022967          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFIS  287 (289)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i~  287 (289)
                      +.|++++.++...   ..+. .....+..+.+|.+|++|+++..+++.
T Consensus       235 ~gl~~~~~~g~~~---~~~~-~~~~~~~~~~~~~~g~l~v~t~~ggl~  278 (330)
T 3hxj_A          235 GHLYAINPDGTEK---WRFK-TGKRIESSPVIGNTDTIYFGSYDGHLY  278 (330)
T ss_dssp             TEEEEECTTSCEE---EEEE-CSSCCCSCCEECTTSCEEEECTTCEEE
T ss_pred             CeEEEECCCCCEe---EEee-CCCCccccceEcCCCeEEEecCCCCEE
Confidence            7899997544322   1121 122345678889999999999887764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.34  E-value=2.1e-10  Score=96.79  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=127.2

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeec--CcCccCeEEcCCCcEEEEeCC--CceEEEeCCC--eEEE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG--GDTLLGITTTQENEILVCDAD--KGLLKVTEEG--VTVL  150 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~l~v~~~~--~~i~~~~~~g--~~~~  150 (289)
                      ..+.+++++++|++++ +.+++|+.++++|+...-....  .... +..+.++|++++++..  .+++.++.+|  +..+
T Consensus        37 ~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~  114 (276)
T 3no2_A           37 WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLSKT  114 (276)
T ss_dssp             CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE
T ss_pred             CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE
Confidence            4688999999999999 5567899999888754332222  2334 6777889999998754  4588888777  3333


Q ss_pred             EeccC-CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          151 ASHVN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~-~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ..... ...+..+..+.+.++|++++++..                 .++|+.+|++ |+..-.......|.++...+++
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g  176 (276)
T 3no2_A          115 EFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG  176 (276)
T ss_dssp             EECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECTTS
T ss_pred             eccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcCCC
Confidence            22111 123345678899999999998753                 4789999998 5543322333567888888888


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCC----CCCCceeeCCCCCEEEEEeCcc
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLP----GGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~----~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      + +++++...++|+.+|.++.+...  .+.. .++    ..|.++.++.+|+++|+.+.|.
T Consensus       177 ~-~~v~~~~~~~v~~~d~~tG~~~w--~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~  234 (276)
T 3no2_A          177 D-CLVACGDAHCFVQLNLESNRIVR--RVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  234 (276)
T ss_dssp             C-EEEECBTTSEEEEECTTTCCEEE--EEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred             C-EEEEeCCCCeEEEEeCcCCcEEE--EecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence            8 77777777899999987322211  1111 111    3478899999999999997553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.33  E-value=7.8e-10  Score=94.73  Aligned_cols=185  Identities=10%  Similarity=0.098  Sum_probs=118.6

Q ss_pred             CcceEEEccCCC-EEEEe-cCCeEEEEec-CCceE---EeeeecCcCccCeEEcCCCc-EEEEe-CCCceEEEe-CC-C-
Q 022967           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWE---NWKLIGGDTLLGITTTQENE-ILVCD-ADKGLLKVT-EE-G-  146 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~~g~i~~~~~-~g~~~---~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~~i~~~~-~~-g-  146 (289)
                      .|.+++++++|+ ||++. .++.|..++. +|...   ........+. +++++++|+ +|+++ ....+..++ .+ + 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            799999999887 67766 4778888874 44322   1122334577 999999985 88877 345677777 44 6 


Q ss_pred             eEEEEe-ccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC--CCeEEE---ee---CC
Q 022967          147 VTVLAS-HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSI---LL---DS  216 (289)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~~~~---~~---~~  216 (289)
                      +..+.. .........+.+++++|+|. +|++...                 .+.|..++.+  +++...   +.   .+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            543220 01111123577899999996 7777632                 3567777663  344321   11   11


Q ss_pred             ---CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC--CCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          217 ---LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG--ESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       217 ---~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                         ...+.+++|+||+++||++....+.|.+|+++.  .+......+  ...+.|.+++++++|+ +|++..
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--ECSSSCCCEEECTTSSEEEEECT
T ss_pred             ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee--cCCCccceEEECCCCCEEEEecC
Confidence               234567999999999999988889999999873  222222222  1223488999999997 666663

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.33  E-value=3.2e-10  Score=94.67  Aligned_cols=155  Identities=12%  Similarity=0.048  Sum_probs=108.7

Q ss_pred             CCcCCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--e
Q 022967           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EEG--V  147 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~  147 (289)
                      +.-..+++++++ +++||+.+ .++.+.++| .+++...-.... +... |+..| .+++|+++..+.+..+| .+.  .
T Consensus        63 ~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~-glt~D-g~~l~vs~gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           63 DDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGW-GLATD-GKILYGSDGTSILYEIDPHTFKLI  139 (266)
T ss_dssp             CTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCC-EEEEC-SSSEEEECSSSEEEEECTTTCCEE
T ss_pred             CCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeE-EEEEC-CCEEEEECCCCeEEEEECCCCcEE
Confidence            334567788887 56999777 678999999 455443322223 3344 55554 34799998656799999 444  3


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--C---------
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S---------  216 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~---------  216 (289)
                      ..+.-...+.+...++.+.+. +|.+|++...                 .+.|.++|++++++....+  +         
T Consensus       140 ~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             EEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             EEEEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCccccccccc
Confidence            333222234455578898888 8899998743                 3689999999887654322  1         


Q ss_pred             ---CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          217 ---LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       217 ---~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                         ...|+||+++++++++||+.....+|+.+++..
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence               146799999999999999999999999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.32  E-value=5.8e-10  Score=92.26  Aligned_cols=150  Identities=19%  Similarity=0.217  Sum_probs=107.7

Q ss_pred             CcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEe
Q 022967           78 GPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~  152 (289)
                      ..++++++ +++||+.+ .++.++++| .+.+...-....+... |++.| .+.||+++....|..+| .+.  ...+.-
T Consensus        88 FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A           88 FGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             CEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            34778887 56999777 678999999 4565443333345667 88876 35799998656799999 444  333322


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-------------CCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------LFF  219 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-------------~~~  219 (289)
                      ...+.++..++.+... +|.||+..-.                 ...|.++|++++++....+-             ...
T Consensus       165 ~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          165 TAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             ccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCc
Confidence            2344566677778776 8999998743                 36899999999987654321             246


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +||||++|+++.|||+.-.--+++.+.+.
T Consensus       227 lNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          227 LNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            79999999999999998877788877653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=5.9e-10  Score=97.51  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=117.7

Q ss_pred             cCCcceEEEccCCC-EEEEecCCeEEEEe-c-CCceEEeee--ecCcCccCeEEcCCCc-EEE--Ee-------------
Q 022967           76 LNGPEDVCVDRNGV-LYTATRDGWIKRLH-K-NGTWENWKL--IGGDTLLGITTTQENE-ILV--CD-------------  134 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~-~g~~~~~~~--~~~~p~~gl~~d~~g~-l~v--~~-------------  134 (289)
                      ...|..++++++|+ ||+++.+ .|..++ . +|+......  ..+.|. .++++++|+ +|+  ++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999987 7777665 788887 3 776544322  124577 899999998 243  32             


Q ss_pred             CCCceEEEe--CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC-CCe
Q 022967          135 ADKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNE  209 (289)
Q Consensus       135 ~~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~  209 (289)
                      ....+..++  .+| ...............+.+++++|||+ +|+++..                 .+.|+.++.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            223344444  456 43221111101124678999999996 7777642                 3567777766 566


Q ss_pred             EEEe---e--CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC--CCCcc-eeeeeccCC------C-------CCCc
Q 022967          210 TSIL---L--DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG--ESKEQ-TEIFVENLP------G-------GPDN  268 (289)
Q Consensus       210 ~~~~---~--~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~-~~~~~~~~~------~-------~p~~  268 (289)
                      ...+   .  .....|.+++|+|||+++|+++...+.|.+|+.+.  .++.. .... ..++      .       .|.+
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF-PLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-ESSCTTCCCBCTTTSSBSEEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE-EcCCCCcCCccccccccccccc
Confidence            5432   1  12456899999999999999988778898888753  12211 0111 1111      1       3678


Q ss_pred             ee-eCCCCC-EEEEEeC
Q 022967          269 IK-LAPDGS-FWIAILQ  283 (289)
Q Consensus       269 i~-~d~~G~-lwv~~~~  283 (289)
                      ++ +++||+ +|++..+
T Consensus       259 i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          259 VCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEECTTSSEEEEEEEE
T ss_pred             EEEECCCCCEEEEECCC
Confidence            99 999995 6777643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.29  E-value=7.5e-10  Score=96.33  Aligned_cols=186  Identities=15%  Similarity=0.157  Sum_probs=115.6

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEe--cCCceEEee----eec----------CcCccCeEEcCCCc-EEEEeCC-C
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWENWK----LIG----------GDTLLGITTTQENE-ILVCDAD-K  137 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~--~~g~~~~~~----~~~----------~~p~~gl~~d~~g~-l~v~~~~-~  137 (289)
                      ..|..+++ .+..||++. .++.|..++  .+|......    ...          ..++ +++++++|+ ||+++.+ .
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCCC
Confidence            56888888 344577776 567888887  344332211    111          1235 799999997 8888764 3


Q ss_pred             ceEEEe---CCC------eEEE--EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967          138 GLLKVT---EEG------VTVL--ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       138 ~i~~~~---~~g------~~~~--~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                      .+..++   ..+      +...  ...........+.+++++|||+ +|++...                 .+.|..++.
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~  240 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFRY  240 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEEE
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEe
Confidence            455554   222      1111  0000111224578999999996 8887642                 356777766


Q ss_pred             CCCeEEEee------CCCCCcceEEEecCCCEEEEEeCC-CCeEEEEEecC--CCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          206 SLNETSILL------DSLFFANGVALSKDEDYLVVCETF-KFRCLKYWLKG--ESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       206 ~~~~~~~~~------~~~~~p~gl~~~~d~~~l~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      ++++.+.+.      .+...|.+++|+|||++||+++.. .+.|.+|+++.  ..+.....+. . ...|.+++++++|+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC
Confidence            566654331      223557799999999999999988 88999999862  2222222222 2 35789999999996


Q ss_pred             -EEEEEeC
Q 022967          277 -FWIAILQ  283 (289)
Q Consensus       277 -lwv~~~~  283 (289)
                       ||++...
T Consensus       319 ~l~~~~~~  326 (361)
T 3scy_A          319 YLLVACRD  326 (361)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence             7777643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.27  E-value=3.3e-10  Score=108.76  Aligned_cols=180  Identities=18%  Similarity=0.231  Sum_probs=115.6

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeeec-------CcCccCeEEcCCCcEEEEeCCCceEEEe-CC----
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG-------GDTLLGITTTQENEILVCDADKGLLKVT-EE----  145 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~-------~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~----  145 (289)
                      ..++..|++|+||+++ +++|.++++ ++++..+....       .... .|..|++|+||++....|+++++ ..    
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            4678899999999998 467999994 56666553211       1234 67888999999998778999998 32    


Q ss_pred             --C-eE---EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-C-
Q 022967          146 --G-VT---VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-L-  217 (289)
Q Consensus       146 --g-~~---~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~-  217 (289)
                        + +.   .+ ....+........|..|++|+||+..+.                 .++|+++|+++++++.+... + 
T Consensus       453 ~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~  514 (758)
T 3ott_A          453 TSGQYIAEQNY-SVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELT  514 (758)
T ss_dssp             CSSEEECSEEE-CGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSC
T ss_pred             CCcceeccccc-ccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcC
Confidence              1 11   11 1112222234678999999999992211                 14699999998887766322 1 


Q ss_pred             --CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCceeeCCCCCEEEEEeCc
Q 022967          218 --FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       218 --~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~lwv~~~~g  284 (289)
                        ..++.+..+.+|. ||++..  ++|.+|+..+.......  ...++ ....++..| +|+||+++..|
T Consensus       515 ~~~~~~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~G  578 (758)
T 3ott_A          515 GEKSPNYLLCDEDGL-LWVGFH--GGVMRINPKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTTNG  578 (758)
T ss_dssp             GGGCEEEEEECTTSC-EEEEET--TEEEEECC--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEESSC
T ss_pred             CCcccceEEECCCCC-EEEEec--CceEEEecCCCceEEec--ccCCCccceEEEEEC-CCCEEEECCCC
Confidence              2356677777777 999853  68999987654433221  11222 223446665 78999998554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.27  E-value=2.7e-10  Score=99.69  Aligned_cols=190  Identities=15%  Similarity=0.114  Sum_probs=116.0

Q ss_pred             CcceEEEccCCC---EEEEe-------------cCCeEEEEe--cCCceEEeee-----ecCcCccCeEEcCCCc-EEEE
Q 022967           78 GPEDVCVDRNGV---LYTAT-------------RDGWIKRLH--KNGTWENWKL-----IGGDTLLGITTTQENE-ILVC  133 (289)
Q Consensus        78 ~p~~l~~d~~g~---l~v~~-------------~~g~i~~~~--~~g~~~~~~~-----~~~~p~~gl~~d~~g~-l~v~  133 (289)
                      .|.+++++++|+   +|+++             .+|.+..++  .+|+......     ....++ ++++++||+ ||++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~spdG~~l~~~  162 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYSA  162 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce-EEEECCCCCEEEEE
Confidence            388899999998   23443             467777776  4576543222     235678 999999996 7778


Q ss_pred             eCC-CceEEEe-C-CC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          134 DAD-KGLLKVT-E-EG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       134 ~~~-~~i~~~~-~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                      +.+ ..|+.++ . +| .+.+...........|.+++++||| .+|++....               ..-.++.++.+++
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~~~g  227 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---------------NRICEYVIDPATH  227 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEECTTTC
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC---------------CeEEEEEEeCCCC
Confidence            754 5677787 5 67 5433221100012468899999999 478875420               1123555666556


Q ss_pred             eEEE----ee---CCC---C-------CcceEE-EecCCCEEEEEeCCCC-----eEEEEEecC-CCCcceeeeeccCCC
Q 022967          209 ETSI----LL---DSL---F-------FANGVA-LSKDEDYLVVCETFKF-----RCLKYWLKG-ESKEQTEIFVENLPG  264 (289)
Q Consensus       209 ~~~~----~~---~~~---~-------~p~gl~-~~~d~~~l~v~~~~~~-----~i~~~~~~~-~~~~~~~~~~~~~~~  264 (289)
                      +...    +.   .+.   .       .+.+++ ++|||++||+++.+.+     .|.+|+++. .++............
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~  307 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC
Confidence            5421    21   111   1       478899 9999999999987655     899999862 222111112222234


Q ss_pred             CCCceeeCC---CC-CEEEEEeC
Q 022967          265 GPDNIKLAP---DG-SFWIAILQ  283 (289)
Q Consensus       265 ~p~~i~~d~---~G-~lwv~~~~  283 (289)
                      .|.++++++   +| .+|++...
T Consensus       308 ~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          308 GGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSS
T ss_pred             CcccceecCCCcCCCEEEEEEcC
Confidence            578888887   66 46666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=1.2e-09  Score=90.46  Aligned_cols=149  Identities=19%  Similarity=0.251  Sum_probs=107.2

Q ss_pred             CcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEe
Q 022967           78 GPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~  152 (289)
                      ..|+++++ +++||+.+ .++.++++| .+++...-....+... |++.| .+.||+++....|..+| .+.  ...+.-
T Consensus        97 FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A           97 FAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            45778887 56999776 678999999 4565443333445667 88886 35799998657799999 554  333332


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--------------CCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------SLF  218 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--------------~~~  218 (289)
                      ...+.++..++.|... +|.||+....                 ...|.++|++++++....+              ...
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             CCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            3345556677888876 8899988743                 3689999999998764422              124


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      .+||||++|+++.|||+.-.--+++.+.+
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            68999999999999999877677777654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.25  E-value=2.4e-09  Score=91.39  Aligned_cols=194  Identities=14%  Similarity=0.098  Sum_probs=119.3

Q ss_pred             CcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecC------cCccCeEEcCCC-cEEEEe------------C
Q 022967           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGG------DTLLGITTTQEN-EILVCD------------A  135 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~------~p~~gl~~d~~g-~l~v~~------------~  135 (289)
                      .|.+++++++|+ +|++. .++.|+.++ .+++.........      .+. +++++++| .||++.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            489999999885 67665 568899999 4566543222222      678 99999998 578875            2


Q ss_pred             CCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCc-cCcccc--c---------cc---------c
Q 022967          136 DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTK-FGLHNW--G---------LD---------L  191 (289)
Q Consensus       136 ~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~-~~~~~~--~---------~~---------~  191 (289)
                      ...|+.++ .++ .......  +   ..+.+++++|||+ ||+++.... +-....  .         ..         +
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l  188 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV  188 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred             CceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence            36688888 555 3222221  1   2467889999986 777632200 000000  0         00         0


Q ss_pred             c-eecCCC-----------------------EEEEEeCCCCeEEEe--eCCCCCcceEEEecCCCEEEEEeCCCCeEEEE
Q 022967          192 L-EAKPHG-----------------------KLLKYDPSLNETSIL--LDSLFFANGVALSKDEDYLVVCETFKFRCLKY  245 (289)
Q Consensus       192 ~-~~~~~g-----------------------~i~~~~~~~~~~~~~--~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~  245 (289)
                      . .....+                       .|+.+|.++++....  ......+.+++++||++++|++   .+.|++|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~  265 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESF  265 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEE
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEE
Confidence            0 000000                       467888877765422  2233467889999999999999   3789999


Q ss_pred             EecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEeCc
Q 022967          246 WLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQV  284 (289)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~g  284 (289)
                      |+++.+..  ..+  .....|.+++++++|+ +|++...+
T Consensus       266 d~~~~~~~--~~~--~~~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          266 DLEKNASI--KRV--PLPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             ETTTTEEE--EEE--ECSSCCCEEEECTTSCEEEEESBSS
T ss_pred             ECCCCcCc--cee--cCCCceeeEEECCCCCEEEEEcCCC
Confidence            97653221  111  2235688999999986 77775443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.25  E-value=1.7e-09  Score=94.81  Aligned_cols=178  Identities=13%  Similarity=0.175  Sum_probs=126.5

Q ss_pred             CCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC-eEE
Q 022967           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g-~~~  149 (289)
                      ..+.++++.++|+ ||++. .++.|..++ .+++..........+. +++++++|+ ||++... ..|..++ .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4588999999887 55554 789999999 5666554444445667 999999886 7777654 5688888 556 322


Q ss_pred             EEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      ....     ...+.++++.++|. +|++...                 .+.|+.+|..+++..........+..++++++
T Consensus       111 ~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2221     12467899999996 7677542                 46899999887776655555567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEE
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~  281 (289)
                      ++.+|++....+.|+.||+......  .. . .....+.+++++.+|. +|++.
T Consensus       169 g~~l~~~~~~~~~v~~~d~~~~~~~--~~-~-~~~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          169 GTKVYVANFDSMSISVIDTVTNSVI--DT-V-KVEAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEE--EE-E-ECSSEEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEE--EE-E-ecCCCccceEECCCCCEEEEEe
Confidence            9999999888899999998654221  11 1 1234567788888885 66665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.24  E-value=3e-09  Score=87.25  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=107.6

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~  151 (289)
                      ...++++++ +++||+.+ .++.++++| .+.+...-....+.+. |++.| .+.||+++....|..+| .+.  ...+.
T Consensus        65 ~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           65 YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            345788887 57999766 678999999 4555443333345667 78765 35899999767799999 444  33333


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--------------CC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------SL  217 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--------------~~  217 (289)
                      -...+.++..++.|... +|+||+..-.                 ...|.++|++++++....+              ..
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~  203 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTN  203 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcC
Confidence            33345556677777765 8899988642                 3689999999998764422              12


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ..+||||++|++++|||+.-.--+++.+.+.
T Consensus       204 ~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          204 DVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             SCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            4679999999999999998777788877664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.22  E-value=3e-10  Score=109.02  Aligned_cols=179  Identities=17%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEecc
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV  154 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~  154 (289)
                      -.+++.|.+|.||+++.+ ++.+++. .+++....... .... .+. +.+|.|||+.. .|+++++ .++ ++.+....
T Consensus        65 i~~i~~d~~g~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~-~i~-~~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~  140 (758)
T 3ott_A           65 IYCGVIIDNTYLYMGTDN-GILVYNYRADRYEQPETDFPTDVR-TMA-LQGDTLWLGAL-NGLYTYQLQSRKLTSFDTRR  140 (758)
T ss_dssp             EEEEEEETTTEEEEEETT-EEEEEETTTTEECCCSCCCCSCEE-EEE-EETTEEEEEET-TEEEEEETTTCCEEEECHHH
T ss_pred             EEEEEEcCCCcEEEEeCC-CeEEEeCCCCEEECcccCCCceEE-EEE-ecCCcEEEEcC-CcceeEeCCCCeEEEeccCC
Confidence            356788999999999865 5999983 33333210000 1112 343 35789999986 5999999 555 66552211


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC----C--CcceEEEecC
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL----F--FANGVALSKD  228 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~----~--~p~gl~~~~d  228 (289)
                      .+.+......|..+.+|+||++..                   ++|++++++++++..+....    .  ....+..+.+
T Consensus       141 ~~l~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  201 (758)
T 3ott_A          141 NGLPNNTIYSIIRTKDNQIYVGTY-------------------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTT  201 (758)
T ss_dssp             HCCSCSCEEEEEECTTCCEEEEET-------------------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETT
T ss_pred             CCcCCCeEEEEEEcCCCCEEEEeC-------------------CCHhhCccCCCceEEecCCCccccccceeEEEEEECC
Confidence            222234567889999999999853                   46999999877766543211    1  1234666767


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ++.||++..  ++|++|+.....+.....+.   ......|..|.+|+||||+. +|+
T Consensus       202 ~~~lWigt~--~Gl~~~~~~~~~~~~~~~l~---~~~i~~i~~d~~g~lWigT~-~Gl  253 (758)
T 3ott_A          202 RQCVWIGTE--GYLFQYFPSTGQIKQTEAFH---NNSIKSLALDGNGDLLAGTD-NGL  253 (758)
T ss_dssp             TTEEEEEEE--EEEEEEETTTTEEEEEEEEE---EEEEEEEEECTTCCEEEEET-TEE
T ss_pred             CCEEEEEEC--CCCeEEcCCCCeEEeccCCC---CCeEEEEEEcCCCCEEEEeC-Cce
Confidence            777899852  58999987654332211111   12345688999999999995 454

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.22  E-value=2.2e-09  Score=91.90  Aligned_cols=175  Identities=12%  Similarity=0.099  Sum_probs=113.2

Q ss_pred             CCCEEEE-ecCCeEEEEec--CCceEEe--eeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-C--CC-eEEEEeccC
Q 022967           87 NGVLYTA-TRDGWIKRLHK--NGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E--EG-VTVLASHVN  155 (289)
Q Consensus        87 ~g~l~v~-~~~g~i~~~~~--~g~~~~~--~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~--~g-~~~~~~~~~  155 (289)
                      +..+|++ ..++.|..++.  +|+....  ......+. +++++++|+ ||++... ..+..++ .  +| .+.+.....
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            3467776 46788999884  3544333  23345677 999999997 8887765 4565555 3  55 544432211


Q ss_pred             CccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC---eEEEeeCCCCCcceEEEecCCCE
Q 022967          156 GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN---ETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~---~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      .   ..+.+++++|+|+ ||++...                 .+.|..+|.+.+   +..........+.+++++|+++.
T Consensus        83 ~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           83 P---GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             S---SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             C---CCCcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence            1   2678999999996 7777542                 255666665222   22223345567899999999999


Q ss_pred             EEEEeCCCCeEEEEEecC-CCCccee--eeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          232 LVVCETFKFRCLKYWLKG-ESKEQTE--IFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~-~~~~~~~--~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      +|+++...+.|.+|++.. .+.....  .........|.+++++++|. +|++..
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            999987778999999875 3332211  22212234678899999996 677763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.22  E-value=4.8e-09  Score=91.19  Aligned_cols=189  Identities=13%  Similarity=0.220  Sum_probs=116.3

Q ss_pred             cCCcceEEEccCCC-EEEEecC----CeEEEEe--cC-CceEEeee---ecCcCccCeEEcCCCcEEEEeCCC-ceEEEe
Q 022967           76 LNGPEDVCVDRNGV-LYTATRD----GWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQENEILVCDADK-GLLKVT  143 (289)
Q Consensus        76 ~~~p~~l~~d~~g~-l~v~~~~----g~i~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~  143 (289)
                      ...|..++++++|+ ||++..+    +.|..++  .+ |+.+.+..   ....|. .+++ ....||+++... .+..++
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~-dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT-NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE-CSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE-CCCEEEEEECCCCEEEEEE
Confidence            57899999999887 7776653    6776555  43 66554432   234677 8888 333588887543 466666


Q ss_pred             --CCC-eEEE----EeccCCc-----cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEE--EEEeCCCC
Q 022967          144 --EEG-VTVL----ASHVNGS-----RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSLN  208 (289)
Q Consensus       144 --~~g-~~~~----~~~~~~~-----~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~  208 (289)
                        .++ +..+    .....+.     ....+.+++++|||+ +|+++..                 .+.|  |.++..++
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~  189 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNAN  189 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCC
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCC
Confidence              344 3211    1111110     112357799999996 8888643                 2344  44555443


Q ss_pred             ----e-E-------EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCCC
Q 022967          209 ----E-T-------SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPD  274 (289)
Q Consensus       209 ----~-~-------~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~  274 (289)
                          + +       .........|.+++|+||++++|+++...+.|.+|++++..+........  .....|.++++++|
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC
Confidence                2 2       12233456788999999999999999888999999987543322222211  11134668999999


Q ss_pred             CC-EEEEEeC
Q 022967          275 GS-FWIAILQ  283 (289)
Q Consensus       275 G~-lwv~~~~  283 (289)
                      |+ +|++...
T Consensus       270 g~~l~v~~~~  279 (361)
T 3scy_A          270 GKYLYASNRL  279 (361)
T ss_dssp             SSEEEEEECS
T ss_pred             CCEEEEECCC
Confidence            97 5676654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.20  E-value=2.7e-09  Score=91.70  Aligned_cols=196  Identities=14%  Similarity=0.045  Sum_probs=109.6

Q ss_pred             CcceEEEccCCC-EEEEe-cCCeEEEEec-CCceEEeeeec-------CcCccCeEEcCCCc-EEEEeCC----------
Q 022967           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIG-------GDTLLGITTTQENE-ILVCDAD----------  136 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~~g~i~~~~~-~g~~~~~~~~~-------~~p~~gl~~d~~g~-l~v~~~~----------  136 (289)
                      .|..++++++|+ +|++. .++.|+.++. +++........       ..+. +++++++|+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            689999999886 77665 6789999994 55544322221       2367 999999985 6666632          


Q ss_pred             --CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCc-cCccccc-cccceec---------------
Q 022967          137 --KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTK-FGLHNWG-LDLLEAK---------------  195 (289)
Q Consensus       137 --~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~-~~~~~~~-~~~~~~~---------------  195 (289)
                        ..++.++ .++ ..........  ...+.++++++||++|++...-. +-..... ...+...               
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CCCeEEEEECCCccccceeeeccC--CCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceee
Confidence              5677888 554 2111010111  12467888999999887532200 0000000 0000000               


Q ss_pred             ------------------------------CCCEEEEEeCCCCeEEEee--CCCCCcceEEEec-CCCEEEEEeCCCCeE
Q 022967          196 ------------------------------PHGKLLKYDPSLNETSILL--DSLFFANGVALSK-DEDYLVVCETFKFRC  242 (289)
Q Consensus       196 ------------------------------~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~-d~~~l~v~~~~~~~i  242 (289)
                                                    ....++.++..++++..+.  .....+.+++++| |++.+|++   .+.|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v  277 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRL  277 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeE
Confidence                                          0001112333333332221  1123567788899 99999998   5789


Q ss_pred             EEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEEeC
Q 022967          243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQ  283 (289)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~  283 (289)
                      ++||+.+.+..  ..+  .....|.+++++.+| .||++...
T Consensus       278 ~~~d~~~~~~~--~~~--~~~~~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          278 AKYDLKQRKLI--KAA--NLDHTYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             EEEETTTTEEE--EEE--ECSSCCCEEEECSSSSCEEEESBS
T ss_pred             EEEECccCeEE--EEE--cCCCCccceEECCCCCEEEEecCC
Confidence            99997653221  112  123458889999887 57776443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.20  E-value=6.3e-09  Score=91.12  Aligned_cols=178  Identities=16%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             CcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC-eEEE
Q 022967           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g-~~~~  150 (289)
                      .+.+++++++|+ ||++. .++.|..++ .+++..........+. +++++++|+ +|++... +.|+.++ .++ ....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            688899999887 66655 568999999 4555544444445667 999999986 6677654 5578888 566 3222


Q ss_pred             EeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ...     ...+.+++++++|. +|++...                 .+.|+.+|..+++..........+.++++++++
T Consensus       154 ~~~-----~~~~~~~~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          154 VSV-----GRSPKGIAVTPDGTKVYVANFD-----------------SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             EEC-----CSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             Eec-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence            221     13467899999995 6677542                 467999999877766555555678899999999


Q ss_pred             CEEEEEeC--CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          230 DYLVVCET--FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       230 ~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      +.+|++..  ..+.|..||+.....  ...+  .....|.+++++.+|. +|++..
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNKI--TARI--PVGPDPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEE--EEEE--ECCSSEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEecCcCCCcEEEEECCCCeE--EEEE--ecCCCccEEEEccCCCEEEEEcC
Confidence            99999875  578999999765321  1112  1123567788898885 667754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.19  E-value=2e-09  Score=93.37  Aligned_cols=159  Identities=11%  Similarity=0.124  Sum_probs=107.3

Q ss_pred             eEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC-eEEEEe--ccCCccccCccceEEcCC----CcEEEeeC
Q 022967          108 WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVLAS--HVNGSRINLADDLIAATD----GSIYFSVA  178 (289)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g-~~~~~~--~~~~~~~~~~~~l~~~~d----G~lyv~~~  178 (289)
                      ++.+......|. +|++.++|+|||++. ..+|++++ .+| .+.+..  .........+.+|+++||    |.||++..
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            345566677899 999999999999997 56799998 456 544432  122233457889999984    88999743


Q ss_pred             CCccCccccccccceecCCCEEEEEeCCCC--------eEEEee-----CCCCCcceEEEecCCCEEEEEeC--------
Q 022967          179 STKFGLHNWGLDLLEAKPHGKLLKYDPSLN--------ETSILL-----DSLFFANGVALSKDEDYLVVCET--------  237 (289)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--------~~~~~~-----~~~~~p~gl~~~~d~~~l~v~~~--------  237 (289)
                      ..               ..++|.|+..+.+        +.+.+.     ....+...|+|++||. |||+..        
T Consensus       103 ~~---------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 SA---------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             CS---------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             cC---------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            20               1357888876541        122222     1234567799999997 999842        


Q ss_pred             -----CCCeEEEEEecCCC-----CcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          238 -----FKFRCLKYWLKGES-----KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       238 -----~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                           ...+|+|++.++.-     +...+++...+ -.|.++++|.+|.||++.++.
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~  222 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQ  222 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCS
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCC
Confidence                 35789999987641     11234444333 358999999999999998753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=4e-09  Score=87.24  Aligned_cols=183  Identities=13%  Similarity=0.033  Sum_probs=116.1

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEec-CC--eEEEEe-cCCceEEeeeecCcC--ccCeEEcCCCcEEEEeCC-CceEE
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTATR-DG--WIKRLH-KNGTWENWKLIGGDT--LLGITTTQENEILVCDAD-KGLLK  141 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~-~g--~i~~~~-~~g~~~~~~~~~~~p--~~gl~~d~~g~l~v~~~~-~~i~~  141 (289)
                      +.++-+.-..-++|.++ ++.||+++. +|  .|.++| .+|++..-......+  . |++++ .++||+++.. +.++.
T Consensus        35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~-g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE-GISDW-KDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEESSSSEEEE
T ss_pred             EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee-EEEEe-CCEEEEEEeeCCEEEE
Confidence            44443422223788998 789998773 33  899999 678765544433444  4 67776 4589999865 56888


Q ss_pred             Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----e
Q 022967          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----L  214 (289)
Q Consensus       142 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~  214 (289)
                      +| ++.  +..+..  .+    ...+++.+ .+.||+++++                  +.|+.+|+++.+....    .
T Consensus       112 ~D~~t~~~~~ti~~--~~----eG~glt~d-g~~L~~SdGs------------------~~i~~iDp~T~~v~~~I~V~~  166 (262)
T 3nol_A          112 WNIRNLRQVRSFNY--DG----EGWGLTHN-DQYLIMSDGT------------------PVLRFLDPESLTPVRTITVTA  166 (262)
T ss_dssp             EETTTCCEEEEEEC--SS----CCCCEEEC-SSCEEECCSS------------------SEEEEECTTTCSEEEEEECEE
T ss_pred             EECccCcEEEEEEC--CC----CceEEecC-CCEEEEECCC------------------CeEEEEcCCCCeEEEEEEecc
Confidence            99 555  444432  11    22355543 2479999853                  6899999987654322    1


Q ss_pred             C--CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeee---e------ccCCCCCCceeeCCCC-CEEEEE
Q 022967          215 D--SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF---V------ENLPGGPDNIKLAPDG-SFWIAI  281 (289)
Q Consensus       215 ~--~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~---~------~~~~~~p~~i~~d~~G-~lwv~~  281 (289)
                      .  ....+|.+.+. +| .||+.....+.|.++|..+.+....-.+   .      ......|+|||.|+++ ++||+.
T Consensus       167 ~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          167 HGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            1  24556778876 55 5999988889999999875433211111   0      0112468899999875 788875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.17  E-value=4e-10  Score=98.52  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=106.3

Q ss_pred             ceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEeCCC-eE-EEEec--cCCccccCccceEEcC----CCcEEEee
Q 022967          107 TWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEG-VT-VLASH--VNGSRINLADDLIAAT----DGSIYFSV  177 (289)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~~~g-~~-~~~~~--~~~~~~~~~~~l~~~~----dG~lyv~~  177 (289)
                      +++.+......|. +|+++++|+ |||++...+|++++.+| .. .+...  ........+.+|+++|    +|.||++.
T Consensus         9 ~~~~va~~l~~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A            9 NVEVLQDKLDHPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEEEEESSEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEEEEECCCCCcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            4556666678899 999999999 99999877788888666 43 22211  1111224568999999    58999986


Q ss_pred             CCCccCccccccccceecCCCEEEEEeCCCC-----eEEEeeC-------CCCCcceEEEecCCCEEEEEeCC-------
Q 022967          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-----ETSILLD-------SLFFANGVALSKDEDYLVVCETF-------  238 (289)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-----~~~~~~~-------~~~~p~gl~~~~d~~~l~v~~~~-------  238 (289)
                      ....          .......+|++++.+.+     ..+.+..       ...++.+|+|+||| .||++...       
T Consensus        88 ~~~~----------~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~  156 (353)
T 2g8s_A           88 SEVG----------DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTA  156 (353)
T ss_dssp             EEEC----------SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGG
T ss_pred             eCCC----------CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCcc
Confidence            4200          00000246888765432     2222322       23457899999999 59999632       


Q ss_pred             ------CCeEEEEEecCCCC----------cceeeeeccCCCCCCceeeCC-CCCEEEEEeCc
Q 022967          239 ------KFRCLKYWLKGESK----------EQTEIFVENLPGGPDNIKLAP-DGSFWIAILQV  284 (289)
Q Consensus       239 ------~~~i~~~~~~~~~~----------~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~~~g  284 (289)
                            ..+|+|++.++.-.          ...+.+...+ ..|.++++|. +|+||++..+.
T Consensus       157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCC
Confidence                  35899999886411          0223333222 3488999999 79999998763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.15  E-value=5.4e-09  Score=86.52  Aligned_cols=173  Identities=11%  Similarity=0.034  Sum_probs=113.2

Q ss_pred             cceEEEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCc-cCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEE
Q 022967           79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTL-LGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~-~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~  151 (289)
                      -.+|.++ ++.||+++ .+|+|.++| .+|++..-. ....+. .|++++ .++||+++.. +.++.+| ++.  +..+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            3688887 68999887 567899998 577654433 333333 068886 4589999865 5588899 555  44442


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eC--CCCCcceEEE
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LD--SLFFANGVAL  225 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~--~~~~p~gl~~  225 (289)
                      .  .+    ...+++.+ .++||+++++                  +.|+.+|+++.+....    ..  ...+.|.+.+
T Consensus       134 ~--~~----eGwGLt~D-g~~L~vSdGs------------------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          134 Y--SG----EGWGLCYW-NGKLVRSDGG------------------TMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             C--SS----CCCCEEEE-TTEEEEECSS------------------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             C--CC----ceeEEecC-CCEEEEECCC------------------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            2  11    23466644 3479999853                  6899999997664432    12  2446688887


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEecCCCCcceeeee----------ccCCCCCCceeeCCCC-CEEEEE
Q 022967          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV----------ENLPGGPDNIKLAPDG-SFWIAI  281 (289)
Q Consensus       226 ~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~p~~i~~d~~G-~lwv~~  281 (289)
                      . +| .||+.....+.|.++|....+....-.+.          ......++|||.|+++ +|||+.
T Consensus       189 ~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          189 A-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             E-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             e-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6 56 59999888899999998755432211110          0122468899999865 899874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.15  E-value=1.1e-09  Score=98.79  Aligned_cols=169  Identities=14%  Similarity=0.107  Sum_probs=106.4

Q ss_pred             ceEEeeeecCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC-eEEEEeccCC----ccccCccceEEcC----CCcEEE
Q 022967          107 TWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG-VTVLASHVNG----SRINLADDLIAAT----DGSIYF  175 (289)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g-~~~~~~~~~~----~~~~~~~~l~~~~----dG~lyv  175 (289)
                      +++.+......|. +|+++++|+|||++... +|++++ .+| .+.+......    .....+.+|+++|    +|.||+
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            4455566667899 99999999999999765 599998 457 5554332111    1234567999999    789999


Q ss_pred             eeCCCccCccccccccceecCCCEEEEEeCCCC--e---EEEee-----CCCCCcceEEEecCCCEEEEEeCC-------
Q 022967          176 SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--E---TSILL-----DSLFFANGVALSKDEDYLVVCETF-------  238 (289)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--~---~~~~~-----~~~~~p~gl~~~~d~~~l~v~~~~-------  238 (289)
                      +..........   .  ......+|+|++.+.+  .   .+.+.     ....++++|+|++||+ |||+...       
T Consensus        97 ~~s~~~~~~~~---~--~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           97 SGTFKNPKSTD---K--ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (454)
T ss_dssp             EEEEECTTC-----C--CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEeccccCCCc---c--ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcc
Confidence            86420000000   0  0000246888765321  2   22222     1245689999999997 9998431       


Q ss_pred             -------------------------CCeEEEEEecCCCCc--------ceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          239 -------------------------KFRCLKYWLKGESKE--------QTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       239 -------------------------~~~i~~~~~~~~~~~--------~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                                               ..+|.|++.+|.-..        ..+.+...+ -.|.++++|.+|.||++.++
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g  247 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQG  247 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEEC
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecC
Confidence                                     357999988764110        223443333 35889999999999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.12  E-value=4.9e-09  Score=89.49  Aligned_cols=184  Identities=9%  Similarity=0.038  Sum_probs=115.9

Q ss_pred             CcceEEE---ccCCCEEE-Eec-------------CCeEEEEecC----CceEEeee--------------ecCcCccCe
Q 022967           78 GPEDVCV---DRNGVLYT-ATR-------------DGWIKRLHKN----GTWENWKL--------------IGGDTLLGI  122 (289)
Q Consensus        78 ~p~~l~~---d~~g~l~v-~~~-------------~g~i~~~~~~----g~~~~~~~--------------~~~~p~~gl  122 (289)
                      .|.+|.+   |++|+||+ .+.             ...|+++|.+    |+......              ....++ +|
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-Dv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-QS  142 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-EE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-ee
Confidence            4678999   78999996 432             5779999944    65443322              112477 99


Q ss_pred             EEcCCCcEEEEeC-C-CceEEEeCCC--eEEEEecc-CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCC
Q 022967          123 TTTQENEILVCDA-D-KGLLKVTEEG--VTVLASHV-NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (289)
Q Consensus       123 ~~d~~g~l~v~~~-~-~~i~~~~~~g--~~~~~~~~-~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~  197 (289)
                      ++|++|+.||++. . ..|++++++|  ...+.... .......++||++.|||++++...+                 .
T Consensus       143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-----------------~  205 (334)
T 2p9w_A          143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-----------------P  205 (334)
T ss_dssp             EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-----------------S
T ss_pred             EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-----------------C
Confidence            9999999999764 3 4599999888  44443222 1222346889999999975555422                 3


Q ss_pred             CEEEEEeCCCCeE--EEee--C---CCCCcceE-EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC--CCC
Q 022967          198 GKLLKYDPSLNET--SILL--D---SLFFANGV-ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG--GPD  267 (289)
Q Consensus       198 g~i~~~~~~~~~~--~~~~--~---~~~~p~gl-~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~p~  267 (289)
                      ++|+++|.+.-..  ..+.  .   .+..+.+| ....+|+.|+|++...+.+.....++  ...-+... ..++  .+.
T Consensus       206 g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg--W~sa~~~g-~~~~~~~~~  282 (334)
T 2p9w_A          206 RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN--WKSANIKK-TKRSELQNS  282 (334)
T ss_dssp             SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST--TSEEEEEE-EECGGGGSS
T ss_pred             CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC--cceeEEee-eecCccccC
Confidence            7899999763211  1111  1   35677885 44558887799987656555555444  22222211 1111  167


Q ss_pred             ceeeC------CCCCEEEEEe
Q 022967          268 NIKLA------PDGSFWIAIL  282 (289)
Q Consensus       268 ~i~~d------~~G~lwv~~~  282 (289)
                      +++.+      .++++|+...
T Consensus       283 g~tt~t~~~~~~~~~iYvv~~  303 (334)
T 2p9w_A          283 GFTAVADYYQGSEQGLYAVSA  303 (334)
T ss_dssp             CEEEEEEEEETTEEEEEEEEC
T ss_pred             ceeEEEEeccccCCeEEEEee
Confidence            77776      6679999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=1e-08  Score=86.38  Aligned_cols=171  Identities=13%  Similarity=0.025  Sum_probs=113.6

Q ss_pred             CCCEEEEecCCeEEEEec-CCceEEeeeec--CcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEEeccCCccccCc
Q 022967           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIG--GDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLA  162 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~--~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~  162 (289)
                      ++.|+++..+++|+.++. +|+........  ..++ ++++.++|+++++. .++++.+|.+| +..-... .  .....
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs~-~~~V~~~d~~G~~~W~~~~-~--~~~~~   79 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFSY-SKGAKMITRDGRELWNIAA-P--AGCEM   79 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEEC-BSEEEEECTTSCEEEEEEC-C--TTCEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEeC-CCCEEEECCCCCEEEEEcC-C--CCccc
Confidence            444556668899999995 88765333322  2577 89999999999954 47899999777 3222221 1  01134


Q ss_pred             cceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CC----CCCcceEEEecCCCEEEEEe
Q 022967          163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DS----LFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       163 ~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~----~~~p~gl~~~~d~~~l~v~~  236 (289)
                      .+..+.+||++++++..                ..++|+.++++++.+..+.  ..    ...+.++++.++|+ +++++
T Consensus        80 ~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~  142 (276)
T 3no2_A           80 QTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL  142 (276)
T ss_dssp             EEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred             cccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEe
Confidence            57788899999998642                1367888998755443332  11    23466788899998 67788


Q ss_pred             CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          237 TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ...++|..||.+|+.+   ..+  ..+..|.++.+..+|+++|+...+
T Consensus       143 ~~~~~v~~~d~~G~~~---w~~--~~~~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          143 FATSEVREIAPNGQLL---NSV--KLSGTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             TTTTEEEEECTTSCEE---EEE--ECSSCCCEEEECTTSCEEEECBTT
T ss_pred             cCCCEEEEECCCCCEE---EEE--ECCCCccceeEcCCCCEEEEeCCC
Confidence            8889999999875422   112  112457778888888888876654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.08  E-value=3.6e-08  Score=80.78  Aligned_cols=182  Identities=13%  Similarity=0.074  Sum_probs=115.8

Q ss_pred             EeccCCcCCcceEEEccCCCEEEEecC---CeEEEEe-cCCceEEeeeecCcC--ccCeEEcCCCcEEEEeCC-CceEEE
Q 022967           70 RLGEGILNGPEDVCVDRNGVLYTATRD---GWIKRLH-KNGTWENWKLIGGDT--LLGITTTQENEILVCDAD-KGLLKV  142 (289)
Q Consensus        70 ~~~~~~~~~p~~l~~d~~g~l~v~~~~---g~i~~~~-~~g~~~~~~~~~~~p--~~gl~~d~~g~l~v~~~~-~~i~~~  142 (289)
                      ..+-.+-..-.++.++. +.||+++..   ..|.++| .+|++.........+  . |++++ +++||+++.. +.++.+
T Consensus        14 ~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge-Gi~~~-~~~ly~ltw~~~~v~v~   90 (243)
T 3mbr_X           14 RYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA-GIVAW-RDRLIQLTWRNHEGFVY   90 (243)
T ss_dssp             EEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEESSSSEEEEE
T ss_pred             EcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee-EEEEe-CCEEEEEEeeCCEEEEE
Confidence            33334344456788885 899988743   4899999 678766544433443  4 66776 4689999865 458889


Q ss_pred             e-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe----eC
Q 022967          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LD  215 (289)
Q Consensus       143 ~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~  215 (289)
                      | ++.  +..+..  .+    ...+++.+ .++||+++++                  +.|+.+|+++.+....    ..
T Consensus        91 D~~tl~~~~ti~~--~~----~Gwglt~d-g~~L~vSdgs------------------~~l~~iDp~t~~~~~~I~V~~~  145 (243)
T 3mbr_X           91 DLATLTPRARFRY--PG----EGWALTSD-DSHLYMSDGT------------------AVIRKLDPDTLQQVGSIKVTAG  145 (243)
T ss_dssp             ETTTTEEEEEEEC--SS----CCCEEEEC-SSCEEEECSS------------------SEEEEECTTTCCEEEEEECEET
T ss_pred             ECCcCcEEEEEeC--CC----CceEEeeC-CCEEEEECCC------------------CeEEEEeCCCCeEEEEEEEccC
Confidence            9 555  444422  11    23455543 3479999854                  6899999987654322    11


Q ss_pred             --CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceee---ee-------ccCCCCCCceeeCCCC-CEEEEE
Q 022967          216 --SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI---FV-------ENLPGGPDNIKLAPDG-SFWIAI  281 (289)
Q Consensus       216 --~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~---~~-------~~~~~~p~~i~~d~~G-~lwv~~  281 (289)
                        .+.+.|.+.+. +| .+|+.....+.|.++|....+....-.   +.       ......++|||.|+++ ++||+.
T Consensus       146 g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          146 GRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence              23456777765 45 499998888999999987543321111   00       0112467899999865 788875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.07  E-value=2.7e-08  Score=88.26  Aligned_cols=179  Identities=15%  Similarity=0.113  Sum_probs=121.9

Q ss_pred             CCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC--------CCceEEEe-
Q 022967           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA--------DKGLLKVT-  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~--------~~~i~~~~-  143 (289)
                      ..+.+++++++|. +|++. .++.|..++ .+++..........+. +++++++|+ +|++..        ...|+.++ 
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR-GLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE-EEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce-EEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            5688899999876 55555 678999999 4565443333345577 999999885 666652        23577888 


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcc
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~  221 (289)
                      .++ ....... .    ..+.+++++|+| .+|++...                 .+.|..+|.++++..........+.
T Consensus       291 ~~~~~~~~~~~-~----~~~~~~~~~~~g~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~  348 (433)
T 3bws_A          291 DKEKLIDTIGP-P----GNKRHIVSGNTENKIYVSDMC-----------------CSKIEVYDLKEKKVQKSIPVFDKPN  348 (433)
T ss_dssp             TTTEEEEEEEE-E----ECEEEEEECSSTTEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEeeccC-C----CCcceEEECCCCCEEEEEecC-----------------CCEEEEEECCCCcEEEEecCCCCCC
Confidence            556 3222211 1    246789999999 58887543                 4789999998777655555556788


Q ss_pred             eEEEecCCCEEEEEeCCC--------------CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE-EEEEe
Q 022967          222 GVALSKDEDYLVVCETFK--------------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAIL  282 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wv~~~  282 (289)
                      +++++|+++.+|++....              +.|+.||....+.  ...+. . ...+.+++++++|+. +++..
T Consensus       349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~-~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWE-A-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEE-C-SSSEEEEEECTTSCEEEEEET
T ss_pred             eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEec-C-CCCCceEEEcCCCCEEEEEEC
Confidence            999999999999998754              3899998764322  12221 1 346788999999865 45543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.06  E-value=2.1e-08  Score=89.40  Aligned_cols=205  Identities=13%  Similarity=0.074  Sum_probs=117.5

Q ss_pred             eeEeccCCcCCcceEEEccCCC-EEEEe----------cCCeEEEEe-cCCceEEeeee--------cCcCccCeEEcCC
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV-LYTAT----------RDGWIKRLH-KNGTWENWKLI--------GGDTLLGITTTQE  127 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~-l~v~~----------~~g~i~~~~-~~g~~~~~~~~--------~~~p~~gl~~d~~  127 (289)
                      +.+++.+  ..| ++++++||+ ||+++          .++.|..+| .+++.......        ...|. ++++++|
T Consensus       112 v~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spD  187 (426)
T 3c75_H          112 LGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPD  187 (426)
T ss_dssp             EEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTT
T ss_pred             EEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3445445  458 999999775 88876          256799999 45554432222        24688 9999999


Q ss_pred             C-cEEEEeCC--CceEEEe-CCC--eEEEEeccCCccccCccc----eEEcCCCcEEEeeCCC-cc--------Ccccc-
Q 022967          128 N-EILVCDAD--KGLLKVT-EEG--VTVLASHVNGSRINLADD----LIAATDGSIYFSVAST-KF--------GLHNW-  187 (289)
Q Consensus       128 g-~l~v~~~~--~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~----l~~~~dG~lyv~~~~~-~~--------~~~~~-  187 (289)
                      | .+||++..  +.|..+| +++  +..+.-  .+.....+.+    +.+.+||.+.+.+... +.        ..... 
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            8 59998753  5689999 666  333321  1111112222    5677788654443321 00        00000 


Q ss_pred             ----------ccccceecCCCEEEEEeCCCCeEEEeeC----------CCCCcce---EEEecCCCEEEEEeC-------
Q 022967          188 ----------GLDLLEAKPHGKLLKYDPSLNETSILLD----------SLFFANG---VALSKDEDYLVVCET-------  237 (289)
Q Consensus       188 ----------~~~~~~~~~~g~i~~~~~~~~~~~~~~~----------~~~~p~g---l~~~~d~~~l~v~~~-------  237 (289)
                                ..........+.++.+|..++.......          ....|.|   +++++|++++||++.       
T Consensus       266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth  345 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH  345 (426)
T ss_dssp             BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred             eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence                      0001111223567777765444332210          0112444   899999999999964       


Q ss_pred             --CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          238 --FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       238 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                        ..+.|.++|....+...  .+  ..+..|.+|+++.||+ +|+.++
T Consensus       346 k~~s~~VsVID~~T~kvv~--~I--~vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          346 KAASRFVVVLNAETGERIN--KI--ELGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TSCEEEEEEEETTTCCEEE--EE--EEEEEECEEEECCSSSCEEEEEE
T ss_pred             cCCCCEEEEEECCCCeEEE--EE--ECCCCcCeEEEccCCCEEEEEEc
Confidence              23579999977543321  11  1224699999999998 655554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=3.5e-08  Score=87.65  Aligned_cols=189  Identities=13%  Similarity=0.095  Sum_probs=112.9

Q ss_pred             cCCcceEEEccCCCEEEEe-cC------CeEEEEe-cCCceEEeeeecCc----CccCeEEcCCCcEEEEeC--------
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RD------GWIKRLH-KNGTWENWKLIGGD----TLLGITTTQENEILVCDA--------  135 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~------g~i~~~~-~~g~~~~~~~~~~~----p~~gl~~d~~g~l~v~~~--------  135 (289)
                      ...|..+...++| ||++. .+      |+|..+| .++++.........    +. .+.+.++++++++..        
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            3479999999999 98754 32      6899999 44554432222222    33 466678887666552        


Q ss_pred             ------------CCceEEEe-CCC--eEEEEeccCCccccCccceEE--cCCCc-EEEeeCCCccCccccccccceecCC
Q 022967          136 ------------DKGLLKVT-EEG--VTVLASHVNGSRINLADDLIA--ATDGS-IYFSVASTKFGLHNWGLDLLEAKPH  197 (289)
Q Consensus       136 ------------~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~--~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~  197 (289)
                                  ++.|..++ .++  ...+..   +.....|..|.+  +|+|+ +|++..-.            ...-.
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v---g~~g~~P~~i~f~~~Pdg~~aYV~~e~~------------~~~Ls  279 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL---GEENRMALELRPLHDPTKLMGFINMVVS------------LKDLS  279 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEES---CTTEEEEEEEEECSSTTCCEEEEEEEEE------------TTTCC
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEec---CCCCCccceeEeeECCCCCEEEEEEeee------------ccCCC
Confidence                        46788888 556  333221   111235667766  89984 78875300            00012


Q ss_pred             CEEEEEeCCCCeEEEe-----eC----C------------CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC-CCcce
Q 022967          198 GKLLKYDPSLNETSIL-----LD----S------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQT  255 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~-----~~----~------------~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~  255 (289)
                      +.|+.+..+.++++..     ..    +            ...|.+|.+++|+++|||++.+.+.|.+|+++.. +....
T Consensus       280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv  359 (462)
T 2ece_A          280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT  359 (462)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred             ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            3444433323433211     11    0            2458899999999999999999999999998633 22111


Q ss_pred             e-eeec------------cCCCCCCceeeCCCCC-EEEEE
Q 022967          256 E-IFVE------------NLPGGPDNIKLAPDGS-FWIAI  281 (289)
Q Consensus       256 ~-~~~~------------~~~~~p~~i~~d~~G~-lwv~~  281 (289)
                      . ....            .+.+.|++++++.||+ +||+.
T Consensus       360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            1 1111            1223699999999994 67776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.03  E-value=6.2e-08  Score=84.72  Aligned_cols=75  Identities=8%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      +.|+.+|.++++......... |.+++++|||++||+++.  +.|.+||.++.++...... ......|.+++++++|+
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred             ceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence            468888888776554333334 999999999999999974  8999999775422222222 23446799999999885

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.02  E-value=5.2e-08  Score=89.99  Aligned_cols=177  Identities=11%  Similarity=-0.030  Sum_probs=119.0

Q ss_pred             EEccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEeC--CCeEEEEeccCCc
Q 022967           83 CVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTE--EGVTVLASHVNGS  157 (289)
Q Consensus        83 ~~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~~--~g~~~~~~~~~~~  157 (289)
                      +++++|.+|++. .++.|..+| .+++..........++ +++++++|+ ||+++.++.|..+|.  ...+.+.....+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence            478888999766 678899999 5666543333233477 999999985 888887667888884  222222111111 


Q ss_pred             cccCccceEEcC----CCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------------CCCc
Q 022967          158 RINLADDLIAAT----DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFA  220 (289)
Q Consensus       158 ~~~~~~~l~~~~----dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------------~~~p  220 (289)
                        ..+.+++++|    ||+ +|++...                 .+.|..+|.++++.......            ...+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCce
Confidence              3578999999    985 7777531                 25678888877664433221            1245


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      .+++++++++.+|++....+.|..+|....+...... + ....+|.+++++++|+ ++++..
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~-i-~~~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE-E-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE-e-ccCcCccCceECCCCCEEEEEec
Confidence            6889999999999999999999999987543222111 2 2245789999999997 566654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.01  E-value=4.8e-08  Score=83.22  Aligned_cols=150  Identities=9%  Similarity=0.024  Sum_probs=97.1

Q ss_pred             EEEEecCCeEEEEe-cCCceEEeeeecC---cCccCeEEcCCC-cEEEEeCC-CceEEEe-CCC-e-EEEEeccCCcccc
Q 022967           90 LYTATRDGWIKRLH-KNGTWENWKLIGG---DTLLGITTTQEN-EILVCDAD-KGLLKVT-EEG-V-TVLASHVNGSRIN  160 (289)
Q Consensus        90 l~v~~~~g~i~~~~-~~g~~~~~~~~~~---~p~~gl~~d~~g-~l~v~~~~-~~i~~~~-~~g-~-~~~~~~~~~~~~~  160 (289)
                      ++++..++.|..++ .+++.........   .|. +++++++| .+|++... ..|+.++ .++ . ..+.....+....
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            44556788999999 4565544333334   588 99999998 47888754 4688888 666 3 3332211111112


Q ss_pred             CccceEEcCCC-cEEEeeCCCccCccccccccceec-CCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC
Q 022967          161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAK-PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       161 ~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~  238 (289)
                      .+.++++++|| .+|++....... .      .+.. ..+.|+.+|.++++..........+.+++++||+++||++   
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~-~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLE-L------THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEEC-S------SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---
T ss_pred             cccceEECCCCCEEEEEecccccc-c------ccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---
Confidence            57799999999 588874210000 0      0000 1368999999877765444445678999999999999999   


Q ss_pred             CCeEEEEEecCC
Q 022967          239 KFRCLKYWLKGE  250 (289)
Q Consensus       239 ~~~i~~~~~~~~  250 (289)
                      .+.|++||+.+.
T Consensus       153 ~~~i~~~d~~~~  164 (337)
T 1pby_B          153 GRDLHVMDPEAG  164 (337)
T ss_dssp             SSSEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence            367999998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.94  E-value=1.2e-07  Score=87.42  Aligned_cols=183  Identities=14%  Similarity=0.149  Sum_probs=116.8

Q ss_pred             cceEEEccCCC-EEEEecCCeEEEEec---CCceEEeeeecCcCccCeEEcC----CCc-EEEEeC-CCceEEEe-CCC-
Q 022967           79 PEDVCVDRNGV-LYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTTQ----ENE-ILVCDA-DKGLLKVT-EEG-  146 (289)
Q Consensus        79 p~~l~~d~~g~-l~v~~~~g~i~~~~~---~g~~~~~~~~~~~p~~gl~~d~----~g~-l~v~~~-~~~i~~~~-~~g-  146 (289)
                      |.+++++++|+ ||+++.++.|..++.   +++.......+..|. ++++++    +|+ +|+++. ...+..+| .++ 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            78899999875 678888899999996   344333233456688 999998    885 777764 35677788 555 


Q ss_pred             -eEEEEec---cCCc---cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE--eeCC
Q 022967          147 -VTVLASH---VNGS---RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDS  216 (289)
Q Consensus       147 -~~~~~~~---~~~~---~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~  216 (289)
                       +..+...   ....   +...+.++.+++++. +|++..                 ..+.|+.+|..+.+...  ....
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~g~i~vvd~~~~~~l~~~~i~~  322 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIGA  322 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECTTSSSCEEEEEEC
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CCCeEEEEEecCCCcceeEEecc
Confidence             4433211   0100   112456889999775 555543                 35789999876543211  1233


Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCC-Ccee-eCCC-CCEEEEEe
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGP-DNIK-LAPD-GSFWIAIL  282 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~p-~~i~-~d~~-G~lwv~~~  282 (289)
                      ..+|.+++|+||++++|++....+.|.++|....++..  .+. ...+ .| .+.. .+.+ |.+|++..
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~--~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA--LVDVGKTP-HPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE--EEECSSSB-CCTTCEEEEETTTEEEEEEEB
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE--eeccCCCC-CCCCCcccCCCCCccEEEecc
Confidence            56789999999999999998888999999977543321  111 1111 12 2333 3555 67888764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.93  E-value=1.2e-07  Score=84.14  Aligned_cols=164  Identities=18%  Similarity=0.218  Sum_probs=110.6

Q ss_pred             CCcceEEEccCCC-EEEEe--------cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-
Q 022967           77 NGPEDVCVDRNGV-LYTAT--------RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~--------~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-  143 (289)
                      ..|.+++++++|+ ||++.        .++.|+.++ .+++..........+. +++++++|+ +|++... ..+..++ 
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKR-HIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEE-EEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcc-eEEECCCCCEEEEEecCCCEEEEEEC
Confidence            3478899999885 56665        367899999 4565544433345677 899999984 8887544 5577788 


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcc
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~  221 (289)
                      .++ .......     ...+.+++++++|. +|++.......   ....+..+...|.|+.+|.++++..........+.
T Consensus       333 ~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~---~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~  404 (433)
T 3bws_A          333 KEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRGPNHP---TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT  404 (433)
T ss_dssp             TTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEECCCCCT---TTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEecCCCcc---ccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence            556 3222221     13467999999996 77775431000   00011122234689999998877665555566789


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +++++||++.|+++....+.|..|++++
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999999987789999998764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.92  E-value=2.9e-07  Score=76.33  Aligned_cols=160  Identities=9%  Similarity=0.069  Sum_probs=103.3

Q ss_pred             EeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEe--cCCceE---Eeeeec-CcC----ccCeEEcCCC-cEEEEeCC-
Q 022967           70 RLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWE---NWKLIG-GDT----LLGITTTQEN-EILVCDAD-  136 (289)
Q Consensus        70 ~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~--~~g~~~---~~~~~~-~~p----~~gl~~d~~g-~l~v~~~~-  136 (289)
                      .++.+....+|+|+++.+|.+|+++ .+++++.++  .++...   ...... ..+    ..||++|+++ +||++... 
T Consensus        63 ~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~  142 (255)
T 3qqz_A           63 TIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN  142 (255)
T ss_dssp             EEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred             EEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC
Confidence            4443445789999999999888765 668888887  344322   111111 112    1389999876 79998643 


Q ss_pred             -CceEEEe--CCC--eEEEEec--cCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          137 -KGLLKVT--EEG--VTVLASH--VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       137 -~~i~~~~--~~g--~~~~~~~--~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                       .++++++  ..+  ++++...  ........+.+++++| .|++|+....                 ...|+.+|.++.
T Consensus       143 p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~-----------------s~~L~~~d~~g~  205 (255)
T 3qqz_A          143 PIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE-----------------SRALQEVTLVGE  205 (255)
T ss_dssp             SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTCC
T ss_pred             CceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC-----------------CCeEEEEcCCCC
Confidence             2688887  222  4443221  0111234578999999 5789987643                 367999998854


Q ss_pred             eEEEe--eCC-------CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          209 ETSIL--LDS-------LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       209 ~~~~~--~~~-------~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ....+  ..+       ...|.||+++++|+ |||+.-. +.+|+|...
T Consensus       206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~-n~~y~f~~~  252 (255)
T 3qqz_A          206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEP-NRFYRFTPQ  252 (255)
T ss_dssp             EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETT-TEEEEEEC-
T ss_pred             EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCC-ceEEEEEec
Confidence            33322  111       46889999999998 9999655 799999653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.88  E-value=8.6e-08  Score=82.17  Aligned_cols=139  Identities=15%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             CeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      |+++..++.+|++... ..|+.+| .++ ....... .  ....+.++++++||+ +|++...                 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--~~~~~~~~~~s~dg~~~~v~~~~-----------------   63 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--DKFGPGTAMMAPDNRTAYVLNNH-----------------   63 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--SCCSSCEEEECTTSSEEEEEETT-----------------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-C--CCCCCceeEECCCCCEEEEEeCC-----------------
Confidence            8888888889988654 5688888 666 3222221 1  112477999999996 7887642                 


Q ss_pred             CCEEEEEeCCCCeEEEeeCC-------CCCcceEEEecCCCEEEEEeCC-----------CCeEEEEEecCCCCcc-eee
Q 022967          197 HGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCETF-----------KFRCLKYWLKGESKEQ-TEI  257 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~-------~~~p~gl~~~~d~~~l~v~~~~-----------~~~i~~~~~~~~~~~~-~~~  257 (289)
                      .+.|+.+|.++++.......       ...+.+++++||++++|++...           .+.|++||+.+..... ...
T Consensus        64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence            46899999987775433221       2347899999999999998743           5789999987533222 122


Q ss_pred             eeccCCCCCCceeeCCCCCEEEEE
Q 022967          258 FVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       258 ~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      +  ..+..+.+++++++|++|++.
T Consensus       144 ~--~~~~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B          144 F--PMPRQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             E--ECCSSCCCEEECTTSCEEEES
T ss_pred             c--cCCCcccceeECCCCcEEEcc
Confidence            2  122356778899999988853

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.87  E-value=4.6e-07  Score=83.98  Aligned_cols=186  Identities=15%  Similarity=0.132  Sum_probs=117.4

Q ss_pred             CCcceEEEccCCC-EEEEecCCeEEEEec---CCceEEeeeecCcCccCeEEc----CCCc-EEEEeCC-CceEEEe-CC
Q 022967           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTT----QENE-ILVCDAD-KGLLKVT-EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~~---~g~~~~~~~~~~~p~~gl~~d----~~g~-l~v~~~~-~~i~~~~-~~  145 (289)
                      ..|++++++++|+ +|+++.++.|..+|.   +++...-...+..|. +++++    +||+ +|+++.. +.+..+| .+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            4688999999886 688888899999995   454443334456788 99999    5884 8887654 5677788 44


Q ss_pred             C--eEEEEe-cc--CCc---cccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--e
Q 022967          146 G--VTVLAS-HV--NGS---RINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--L  214 (289)
Q Consensus       146 g--~~~~~~-~~--~~~---~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~  214 (289)
                      .  +..+.. ..  .+.   +...+.++...+++.. +++..                 ..|.|+.+|....+...+  .
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----------------~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTCSSEEEEEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec-----------------CCCeEEEEecCCCccceeeee
Confidence            4  333321 11  110   0113346777777654 44432                 357899998764321111  2


Q ss_pred             CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCC-Ccee-eCCC-CCEEEEEe
Q 022967          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGP-DNIK-LAPD-GSFWIAIL  282 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~p-~~i~-~d~~-G~lwv~~~  282 (289)
                      ....++.++.|++|++++|+++...++|.++|....++... .-. ...+ .| ++.. ++.+ |.+|++..
T Consensus       339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~-i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~  408 (567)
T 1qks_A          339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTP-HPGRGANFVHPTFGPVWATSH  408 (567)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSB-CCTTCEEEEETTTEEEEEEEB
T ss_pred             eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-EeccCcCC-CCccceeeECCCCCcEEEeCC
Confidence            33467888999999999999999999999999875433211 111 1111 22 3544 4665 68898764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.85  E-value=2.1e-06  Score=75.32  Aligned_cols=204  Identities=15%  Similarity=0.058  Sum_probs=109.8

Q ss_pred             eEeccCCcCCcceEEEccCCC-EEEEec----------CCeEEEEec-CCceEEeeee--------cCcCccCeEEcCCC
Q 022967           69 TRLGEGILNGPEDVCVDRNGV-LYTATR----------DGWIKRLHK-NGTWENWKLI--------GGDTLLGITTTQEN  128 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~-l~v~~~----------~g~i~~~~~-~g~~~~~~~~--------~~~p~~gl~~d~~g  128 (289)
                      ..++.+  ..| ++++.+||+ ||+++.          ++.|.++|. +++.......        ...|. ++++++||
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG  136 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNN  136 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCC
Confidence            445555  468 999999875 788752          467889984 4443222111        23578 99999998


Q ss_pred             c-EEEEeCC--CceEEEeCCC--e-EEEEeccCCccccCccc----eEEcCCCcEEEeeCCCccC-c--------c-cc-
Q 022967          129 E-ILVCDAD--KGLLKVTEEG--V-TVLASHVNGSRINLADD----LIAATDGSIYFSVASTKFG-L--------H-NW-  187 (289)
Q Consensus       129 ~-l~v~~~~--~~i~~~~~~g--~-~~~~~~~~~~~~~~~~~----l~~~~dG~lyv~~~~~~~~-~--------~-~~-  187 (289)
                      + ||+++..  +.|..+| ..  + ..+.. .++.....+.+    +...+||.+.+.+...+.- .        . .. 
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~  214 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcce
Confidence            5 8888742  5688888 54  2 22011 11110001111    3444666543333210000 0        0 00 


Q ss_pred             ---------ccccceecCCCEEEEEeCCCCeEEEee----------CCCCCcce---EEEecCCCEEEEEeC--------
Q 022967          188 ---------GLDLLEAKPHGKLLKYDPSLNETSILL----------DSLFFANG---VALSKDEDYLVVCET--------  237 (289)
Q Consensus       188 ---------~~~~~~~~~~g~i~~~~~~~~~~~~~~----------~~~~~p~g---l~~~~d~~~l~v~~~--------  237 (289)
                               ....+.....+.++.+|..++......          .....|.|   +++++|++++|++..        
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~  294 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH  294 (373)
T ss_pred             eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence                     000001112345677776543322111          11123555   889999999999854        


Q ss_pred             -CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          238 -FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       238 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                       ..+.|+++|.++.+..  .. + ..++.|.++++++||+ +|+.+.
T Consensus       295 ~~~~~V~VID~~t~~vv--~~-i-~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          295 AAAKEVTSVTGLVGQTS--SQ-I-SLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             CCCCeEEEEECCCCEEE--EE-E-ECCCCcCeEEECCCCCeEEEEEc
Confidence             2357999997654321  12 2 3345799999999998 555554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.84  E-value=6.1e-07  Score=78.80  Aligned_cols=205  Identities=15%  Similarity=0.105  Sum_probs=113.9

Q ss_pred             eeEeccCCcCCcceEEEccCCC-EEEEe----------cCCeEEEEe-cCCceEEeeee--------cCcCccCeEEcCC
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV-LYTAT----------RDGWIKRLH-KNGTWENWKLI--------GGDTLLGITTTQE  127 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~-l~v~~----------~~g~i~~~~-~~g~~~~~~~~--------~~~p~~gl~~d~~  127 (289)
                      +.+++.|  ..|. +++++||+ +|+++          .++.|.++| .+++.......        ...|. ++++++|
T Consensus        72 ~~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spD  147 (386)
T 3sjl_D           72 IGMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPD  147 (386)
T ss_dssp             EEEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTT
T ss_pred             EEEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCC
Confidence            3445555  4585 99999875 88876          246699998 45554332221        23688 9999999


Q ss_pred             Cc-EEEEeC--CCceEEEe-CCC--eEEEEeccCCccccCccc----eEEcCCCcEEEeeCCC--cc-----Ccccccc-
Q 022967          128 NE-ILVCDA--DKGLLKVT-EEG--VTVLASHVNGSRINLADD----LIAATDGSIYFSVAST--KF-----GLHNWGL-  189 (289)
Q Consensus       128 g~-l~v~~~--~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~----l~~~~dG~lyv~~~~~--~~-----~~~~~~~-  189 (289)
                      |+ +||++.  .+.+..+| .++  +..+.  .++.....|.+    +++.+||.+.+.+...  +.     ...+... 
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~--v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~  225 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLD--VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  225 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCcEEEEEE--CCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence            95 899975  35688899 666  33332  11111112323    3777888654444321  11     0000000 


Q ss_pred             -------------ccceecCCCEEEEEeCCCCeEEEeeC----------CCCCc---ceEEEecCCCEEEEEeC------
Q 022967          190 -------------DLLEAKPHGKLLKYDPSLNETSILLD----------SLFFA---NGVALSKDEDYLVVCET------  237 (289)
Q Consensus       190 -------------~~~~~~~~g~i~~~~~~~~~~~~~~~----------~~~~p---~gl~~~~d~~~l~v~~~------  237 (289)
                                   ..+.....+.++.+|..++..++...          ....|   ..++++++++++|++..      
T Consensus       226 ~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~  305 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  305 (386)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             cccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence                         00111223455666665443222210          01113   34788999999999853      


Q ss_pred             ---CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC--EEEEEe
Q 022967          238 ---FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS--FWIAIL  282 (289)
Q Consensus       238 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwv~~~  282 (289)
                         ..++|+++|....+....  +  .++..|.+|+++.||.  ||++..
T Consensus       306 hk~~~~~V~viD~~t~kv~~~--i--~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          306 HKTASRFVVVLDAKTGERLAK--F--EMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             TTSCEEEEEEEETTTCCEEEE--E--EEEEEECEEEECSSSSCEEEEEET
T ss_pred             cCCCCCEEEEEECCCCeEEEE--E--ECCCCcceEEECCCCCeEEEEEcC
Confidence               136799999876543221  1  1123578999999985  455444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.83  E-value=2.3e-07  Score=80.61  Aligned_cols=103  Identities=9%  Similarity=0.109  Sum_probs=76.8

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEec------------------CCeEEEEecCCceEEeeeecCcCccCeEEcCCC-c
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTATR------------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-E  129 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~~------------------~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~  129 (289)
                      ..+....+..|.+++++++|++|+++.                  .|+|+++++ ++.+........|+ ||++++|| .
T Consensus       157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~~~~~~~~l~~pN-Gia~spDg~~  234 (355)
T 3sre_A          157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEGFDFAN-GINISPDGKY  234 (355)
T ss_dssp             EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TCCEEEEEEESSEE-EEEECTTSSE
T ss_pred             eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-CeEEEeecCCcccC-cceECCCCCE
Confidence            344434578899999999999998752                  368999986 46666666678899 99999998 6


Q ss_pred             EEEEeCC-CceEEEe--CCC-eEE--EEeccCCccccCccceEEcC-CCcEEEeeC
Q 022967          130 ILVCDAD-KGLLKVT--EEG-VTV--LASHVNGSRINLADDLIAAT-DGSIYFSVA  178 (289)
Q Consensus       130 l~v~~~~-~~i~~~~--~~g-~~~--~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~  178 (289)
                      |||++.. +.|++++  .+| +..  .. ...    ..|.++++|+ +|++|++..
T Consensus       235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~----g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFD----TLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECS----SEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEeCCCCeEEEEEECCCCcEecCEEE-eCC----CCCceEEEeCCCCcEEEEec
Confidence            9999865 5688888  456 322  11 121    4689999999 599999753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.73  E-value=9.8e-06  Score=68.63  Aligned_cols=177  Identities=9%  Similarity=0.021  Sum_probs=111.9

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEec-CCce--E-EeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC--eE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW--E-NWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~--~-~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g--~~  148 (289)
                      ...++++.+++++. ++..++.|..++. +++.  . .+........ .+++.+++++++ +.....+..++ .++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            35668899988754 6778899999983 4432  1 1222223344 889998887554 44445678888 555  33


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecC
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d  228 (289)
                      .+.. .    ......+++.++|..+++...                 .+.|..+|.++++.............++++|+
T Consensus       178 ~~~~-~----~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          178 QFQG-H----TDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EECC-C----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             eeec-c----cCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            3311 1    124678999999976555322                 47889999887765544444445678899999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++.++++. ..+.|..|++.....   ..+ .........++..++|.+.++..
T Consensus       236 ~~~l~~~~-~~~~i~~~~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          236 GEWLAVGM-ESSNVEVLHVNKPDK---YQL-HLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             SSEEEEEE-TTSCEEEEETTSSCE---EEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEc-CCCcEEEEECCCCCe---EEE-cCCccceeEEEECCCCCEEEEec
Confidence            99777775 457899999875432   111 12224456688888887655543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.73  E-value=5.4e-08  Score=88.49  Aligned_cols=75  Identities=17%  Similarity=0.183  Sum_probs=57.4

Q ss_pred             ccccCccceEEcCCCcEEE-eeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCCCEEE
Q 022967          157 SRINLADDLIAATDGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLV  233 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~~~l~  233 (289)
                      ..++.|++|+++++|+||| +|..  ++..    ...+......+|++++++++++.++..  ...|+|++|+||+++||
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~--~~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGD--SSNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCC--CCCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCC--cCcc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            4678999999999999999 7765  2211    111223456899999988998888754  45689999999999999


Q ss_pred             EEeC
Q 022967          234 VCET  237 (289)
Q Consensus       234 v~~~  237 (289)
                      |+-.
T Consensus       547 V~vQ  550 (592)
T 4a9v_A          547 VGIQ  550 (592)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9854

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.72  E-value=5.4e-06  Score=70.26  Aligned_cols=176  Identities=9%  Similarity=-0.007  Sum_probs=112.8

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~  150 (289)
                      ...++++.++++++ ++..+|.|..++ .+++... +........ .++++++++.+++ .....+..++ .++  ...+
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  221 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS-CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH  221 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE-EEEECCCCCEEEEEecCCcEEEEECCCCceEeee
Confidence            35678888887755 677889999999 4454332 222233445 8999988865554 4445577778 555  3322


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                       . ..    .....+++.|+|.++++...                 .+.|..+|.++++...+.........++++++++
T Consensus       222 -~-~~----~~v~~~~~s~~~~~l~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          222 -D-FT----SQIFSLGYCPTGEWLAVGME-----------------SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             -E-CS----SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred             -c-CC----CceEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCCeEEEcCCccceeEEEECCCCC
Confidence             1 11    24568899999975554322                 3678888888776655544455678899999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .|+.+. ..+.|..|++......    +..........++...+|++.++..
T Consensus       279 ~l~~~~-~dg~i~~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~  325 (337)
T 1gxr_A          279 WFVSTG-KDNLLNAWRTPYGASI----FQSKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEEEE-TTSEEEEEETTTCCEE----EEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             EEEEec-CCCcEEEEECCCCeEE----EEecCCCcEEEEEECCCCCEEEEec
Confidence            666654 4688999997654321    1112234456788888887655443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.71  E-value=4e-06  Score=69.46  Aligned_cols=175  Identities=11%  Similarity=0.024  Sum_probs=106.6

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cC-CceEEeeeec--CcCccCeEEcCCCcEEEEeC-----CCceEEEe-CCC
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KN-GTWENWKLIG--GDTLLGITTTQENEILVCDA-----DKGLLKVT-EEG  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~-g~~~~~~~~~--~~p~~gl~~d~~g~l~v~~~-----~~~i~~~~-~~g  146 (289)
                      ....++++.++|+.++...++.|+.++ .+ ++........  .... .+++.++|+.+++..     ...|+.++ .++
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            456789999999977555688999999 44 5554443322  3345 899999997544432     24578887 445


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~  224 (289)
                       ...+...      .....+++.|||+ |+++...               ...-.||.++.++++...+.........++
T Consensus       121 ~~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          121 TPRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             CCEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ceEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccce
Confidence             4443221      1256788999996 5544321               112368888887777766655555678899


Q ss_pred             EecCCCEEEEEeC--CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967          225 LSKDEDYLVVCET--FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (289)
Q Consensus       225 ~~~d~~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  277 (289)
                      |+|+++.++++..  +..+|+.++..+...   ..+. ........++.+.+|+.
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERIT-DSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECC-CCSEEEEEEEECTTSSE
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEe-cCCcccCCeEECCCCCE
Confidence            9999998887754  344566665444322   1111 11122334666777753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.70  E-value=7.3e-07  Score=78.06  Aligned_cols=204  Identities=12%  Similarity=-0.047  Sum_probs=111.4

Q ss_pred             ceeEeccCCcCCcceEEEccCC-CEEEEe----------cCCeEEEEe-cCCceEEeeeec--------CcCccCeEEcC
Q 022967           67 SVTRLGEGILNGPEDVCVDRNG-VLYTAT----------RDGWIKRLH-KNGTWENWKLIG--------GDTLLGITTTQ  126 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g-~l~v~~----------~~g~i~~~~-~~g~~~~~~~~~--------~~p~~gl~~d~  126 (289)
                      .+.+++.+  ..| ++++++|| .+|+++          .++.|..+| .+++.......+        ..|. ++++++
T Consensus        58 v~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~Sp  133 (368)
T 1mda_H           58 TLGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCA  133 (368)
T ss_dssp             EEEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECT
T ss_pred             EEEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcC
Confidence            34556666  358 89999976 588886          257799999 556544332222        4699 999999


Q ss_pred             CC-cEEEEeCC--CceEE--Ee-CCCeEEEEeccCCccccCccc----eEEcCCCcEEEeeCCC------ccCc------
Q 022967          127 EN-EILVCDAD--KGLLK--VT-EEGVTVLASHVNGSRINLADD----LIAATDGSIYFSVAST------KFGL------  184 (289)
Q Consensus       127 ~g-~l~v~~~~--~~i~~--~~-~~g~~~~~~~~~~~~~~~~~~----l~~~~dG~lyv~~~~~------~~~~------  184 (289)
                      || .+||++..  +.+..  +| .+ +..+.  ..+.....+.+    ++..+||.+.+.+...      +...      
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~t-v~~i~--v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i  210 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASD-DQLTK--SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEE-EEEEE--CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhh-ceEEE--CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence            99 59999753  33555  55 22 22221  11100011111    3344555433333221      0000      


Q ss_pred             ----cc----cccccceecCCCEEEEEeCCCCeEEEeeC----------CCCCcce---EEEecCCCEEEEEeC---C--
Q 022967          185 ----HN----WGLDLLEAKPHGKLLKYDPSLNETSILLD----------SLFFANG---VALSKDEDYLVVCET---F--  238 (289)
Q Consensus       185 ----~~----~~~~~~~~~~~g~i~~~~~~~~~~~~~~~----------~~~~p~g---l~~~~d~~~l~v~~~---~--  238 (289)
                          ..    .....+.... +.++.+|..++..+....          ....|.|   +++++|++++||+..   +  
T Consensus       211 ~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~  289 (368)
T 1mda_H          211 NCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             eCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence                00    0000011112 557777765433222211          1223555   889999999999854   3  


Q ss_pred             ---CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          239 ---KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       239 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                         ...+.++|....+...  .+  ..+..|.+|++++||. +|++..
T Consensus       290 ~~~~~~~~ViD~~t~~vv~--~i--~vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          290 LAAAENTSSVTASVGQTSG--PI--SNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEE--CC--EEEEEECEEEECCSSSCEEEEEE
T ss_pred             cccCCCEEEEECCCCeEEE--EE--ECCCCcceEEECCCCCEEEEEcc
Confidence               3467788876543221  11  1223699999999995 899987

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.69  E-value=2.1e-06  Score=79.56  Aligned_cols=175  Identities=11%  Similarity=-0.055  Sum_probs=114.6

Q ss_pred             EccCCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-C--CCeEEEEeccCCc
Q 022967           84 VDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-E--EGVTVLASHVNGS  157 (289)
Q Consensus        84 ~d~~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~--~g~~~~~~~~~~~  157 (289)
                      .|+++.+|+.. .++.|..+| .+++.......+..|+ ++++++||+ +|+++....|..+| .  ++ +.+.....+ 
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-  239 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-  239 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC-
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC-
Confidence            45556778766 678999999 4566554444556788 999999986 88888666799999 4  34 222121122 


Q ss_pred             cccCccceEEc----CCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C-----------CCCc
Q 022967          158 RINLADDLIAA----TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S-----------LFFA  220 (289)
Q Consensus       158 ~~~~~~~l~~~----~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~-----------~~~p  220 (289)
                        ..|.+++++    ||| .+|+++..                 .+.+..+|..+.+...... .           ....
T Consensus       240 --~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          240 --SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             --CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence              257899999    698 58888642                 3678888987665433211 1           1123


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE-EEEEe
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAIL  282 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-wv~~~  282 (289)
                      .++..++++..++++....++|+.+|....+...... + ....+|.++.+|.+|++ |++..
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-i-~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-I-SAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-E-ECCSSEEEEEECTTSCEEEEEEG
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-e-eccccccCceECCCCCEEEEEeC
Confidence            5678888888888888888999999876432111111 1 22346788999999964 56654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.68  E-value=3.4e-06  Score=73.60  Aligned_cols=186  Identities=11%  Similarity=0.093  Sum_probs=111.9

Q ss_pred             cceEEEccCCCEE-EEe--cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           79 PEDVCVDRNGVLY-TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~--~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      .+.+++.|||++. +++  .++.|..++ .+++........+... +++|.+||+++++....++.+++ .++ ......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            4568999999865 554  568888899 4555433333445566 99999999988776667788887 555 222111


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-----EeeCCCCCcceEEEec
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSK  227 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-----~~~~~~~~p~gl~~~~  227 (289)
                      . . ........+++.|||...++...             .......++.++.......     .+.........++|+|
T Consensus       215 ~-~-~~~~~v~~v~fspdg~~l~~~s~-------------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          215 D-F-DKNWSLSKINFIADDTVLIAASL-------------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             C-C-CTTEEEEEEEEEETTEEEEEEEE-------------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             c-C-CCCCCEEEEEEcCCCCEEEEEec-------------CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence            1 1 11124568899999987665321             0001123555554433322     1223344457889999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      |+++|..+ ...+.|..||....+.  ...+...-......+++.+||++.++...
T Consensus       280 dg~~lasg-s~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          280 KGELAVLA-SNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             TSCEEEEE-ETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCceEEE-cCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            99966555 4568899999764321  12222222234567889999987776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.68  E-value=4e-06  Score=74.49  Aligned_cols=174  Identities=10%  Similarity=0.050  Sum_probs=109.6

Q ss_pred             CCcceEEEccCCCEE-EEecC---CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC
Q 022967           77 NGPEDVCVDRNGVLY-TATRD---GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~---g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g  146 (289)
                      ....++++.|+|+.. ++..+   ..|+.++ .+|+...+....+... .+++.+||+ |+++...   ..|+.++ .++
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            345678999988744 44443   4899999 5666655544444556 899999997 5544322   3488888 566


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~  224 (289)
                       ...+... .    .....+++.|||+ |+++...               .....|+.+|.++++...+.........++
T Consensus       258 ~~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~  317 (415)
T 2hqs_A          258 QIRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDAD  317 (415)
T ss_dssp             CEEECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             CEEeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence             5443221 1    2356789999997 6655421               122479999998777665544334456789


Q ss_pred             EecCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          225 LSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       225 ~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      |+|||++|+++...  ...|+++++++...   ..+. .. .....++..++|+
T Consensus       318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~-~~-~~~~~~~~spdg~  366 (415)
T 2hqs_A          318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLS-ST-FLDETPSLAPNGT  366 (415)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECC-CS-SSCEEEEECTTSS
T ss_pred             ECCCCCEEEEEECcCCceEEEEEECCCCCE---EEec-CC-CCcCCeEEcCCCC
Confidence            99999988887653  35899999875432   1111 11 1344566666665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.67  E-value=9e-06  Score=71.02  Aligned_cols=190  Identities=11%  Similarity=0.069  Sum_probs=118.3

Q ss_pred             cCCcceEEEccCCCEEEEe-c--C-------------CeEEEEe-cCC--ce-EEeeee------cCcCccCeEEc-C--
Q 022967           76 LNGPEDVCVDRNGVLYTAT-R--D-------------GWIKRLH-KNG--TW-ENWKLI------GGDTLLGITTT-Q--  126 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~--~-------------g~i~~~~-~~g--~~-~~~~~~------~~~p~~gl~~d-~--  126 (289)
                      +.....+.+|+.|+||+-+ .  +             -+|+.+| .++  ++ ..+...      ...-. .+++| .  
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEESCT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEecccC
Confidence            6677889999999999644 2  1             1578888 444  43 333221      12234 78888 2  


Q ss_pred             -----CCcEEEEeCC-CceEEEe-CCC--eEEEEec----------cCCccc---cCccceEEcCC----C-cEEEeeCC
Q 022967          127 -----ENEILVCDAD-KGLLKVT-EEG--VTVLASH----------VNGSRI---NLADDLIAATD----G-SIYFSVAS  179 (289)
Q Consensus       127 -----~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~----------~~~~~~---~~~~~l~~~~d----G-~lyv~~~~  179 (289)
                           ++.+||+|.+ .+|+.+| .+|  .+++...          ..|..+   ....+|+.+|+    + .||+...+
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence                 4569999975 6799999 777  4444211          112222   25678999987    4 59998765


Q ss_pred             CccCccccccccceecCCCEEEEEeCC-------CCeEEEeeCCCCCcc--eEEEecCCCEEEEEeCCCCeEEEEEecC-
Q 022967          180 TKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNETSILLDSLFFAN--GVALSKDEDYLVVCETFKFRCLKYWLKG-  249 (289)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~~~~~~~~~~p~--gl~~~~d~~~l~v~~~~~~~i~~~~~~~-  249 (289)
                      +                 ..+|++..+       ...++.+.+......  ++++++..+.||+++...+.|.+++.++ 
T Consensus       245 s-----------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~  307 (381)
T 3q6k_A          245 A-----------------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKM  307 (381)
T ss_dssp             C-----------------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSC
T ss_pred             C-----------------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCC
Confidence            2                 246665411       123444433322233  4567644456999999999999999775 


Q ss_pred             CC-Ccceeeeec-cCCCCCCceeeCCCCCEEEEEeC
Q 022967          250 ES-KEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       250 ~~-~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +- ....+.+.. ..-.+|+++.+|.+|+||+-+..
T Consensus       308 ~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          308 PLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             SBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             ccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            21 123333332 22258999999999999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.67  E-value=3.4e-07  Score=81.63  Aligned_cols=106  Identities=8%  Similarity=-0.116  Sum_probs=70.0

Q ss_pred             CCEEEEecC-----CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC----------CCceEEEe-CCC--e
Q 022967           88 GVLYTATRD-----GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG--V  147 (289)
Q Consensus        88 g~l~v~~~~-----g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~----------~~~i~~~~-~~g--~  147 (289)
                      .++|+.+..     +.|.++| .+++.......+..|  ++++++||+ |||++.          .+.|..+| .++  +
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            368987742     6899999 455554433444455  899999985 999973          24588888 555  3


Q ss_pred             EEEEeccCCc--cccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          148 TVLASHVNGS--RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       148 ~~~~~~~~~~--~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ..+.-.....  ....|.+++++||| ++|+++..                ..+.|..+|.++++..
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEE
Confidence            3332110000  12468899999999 59998632                2367999999887654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.67  E-value=3.2e-06  Score=77.73  Aligned_cols=178  Identities=15%  Similarity=0.173  Sum_probs=113.3

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g--~~~~~  151 (289)
                      ....++++.++|+.. ++..++.|..++.+++... +........ ++++.++++++++... ..+..++.++  +..+.
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~  464 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT  464 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc
Confidence            345678999988765 6668888999987665433 322233344 8999999876665433 4455566555  44432


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      ..     ......+++.|||.+.++...                 .+.|..++.++.....+.......+.++|+||+++
T Consensus       465 ~~-----~~~v~~~~~spd~~~las~~~-----------------d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          465 GH-----SSSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             CC-----SSCEEEEEECTTSCEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             CC-----CCCEEEEEEcCCCCEEEEEeC-----------------CCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence            21     124678999999987776432                 36677788765444445444455678999999997


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |..+. ..+.|..||.++..+   ..+. ...+...++++.+||++.++..
T Consensus       523 l~s~~-~dg~v~lwd~~~~~~---~~~~-~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          523 IASAS-DDKTVKLWNRNGQLL---QTLT-GHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             EEEEE-TTSEEEEECTTSCEE---EEEE-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEE-CcCEEEEEeCCCCEE---EEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            66654 457888888654321   2222 2223456788888887666543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.67  E-value=2.3e-06  Score=76.05  Aligned_cols=192  Identities=11%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             CCCEEEEe-cCCeEEEEec--C-C--ceEEeee--------ecCcCccCeEEcCCCcEEEEeCC-------CceEEEe-C
Q 022967           87 NGVLYTAT-RDGWIKRLHK--N-G--TWENWKL--------IGGDTLLGITTTQENEILVCDAD-------KGLLKVT-E  144 (289)
Q Consensus        87 ~g~l~v~~-~~g~i~~~~~--~-g--~~~~~~~--------~~~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~-~  144 (289)
                      ...||+.. ..++|+.+|.  + .  ++.+...        ....|+ +++..++| +||+..+       .+++.+| .
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            34678766 7789999992  2 2  2222221        123688 89999999 9997543       3689999 4


Q ss_pred             CC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccc-----cccceecCCCEEEEEeCCCCeEEEeeCC-
Q 022967          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG-----LDLLEAKPHGKLLKYDPSLNETSILLDS-  216 (289)
Q Consensus       145 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~-----~~~~~~~~~g~i~~~~~~~~~~~~~~~~-  216 (289)
                      ++  +..+.  ....+....+++.+.|++++.++..   |+.+...     .+.++.....+|..||.++++......- 
T Consensus       173 T~~v~~~~~--~~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          173 SFEPLGKWE--IDRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TCCEEEECC--SBCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             CCeEEEEEc--cCCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            44  33221  1222334567888999998666543   3322111     1111113457899999987654433221 


Q ss_pred             --CCCcceEEE--ecCCCEEEEEeC-----CCCeEEEEEecCCCCcceeee-------eccC----------CCCCCcee
Q 022967          217 --LFFANGVAL--SKDEDYLVVCET-----FKFRCLKYWLKGESKEQTEIF-------VENL----------PGGPDNIK  270 (289)
Q Consensus       217 --~~~p~gl~~--~~d~~~l~v~~~-----~~~~i~~~~~~~~~~~~~~~~-------~~~~----------~~~p~~i~  270 (289)
                        ...|..+.|  +|+++++||+..     .++.|++|..++......+..       ...+          +..|.+|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence              245777766  999999999987     778888777654322211110       0011          35688999


Q ss_pred             eCCCC-CEEEEEeCcc
Q 022967          271 LAPDG-SFWIAILQVF  285 (289)
Q Consensus       271 ~d~~G-~lwv~~~~g~  285 (289)
                      +..|| .|||+.+..+
T Consensus       328 lS~DGrfLYVSnrg~d  343 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIG  343 (462)
T ss_dssp             ECTTSCEEEEEETTTT
T ss_pred             ECCCCCEEEEEeCCCC
Confidence            99999 5799887644

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.66  E-value=7.9e-07  Score=81.63  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=90.2

Q ss_pred             eeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CC------C-e----EEEEeccCCccccCccceEEcCCCcEEEee
Q 022967          112 KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EE------G-V----TVLASHVNGSRINLADDLIAATDGSIYFSV  177 (289)
Q Consensus       112 ~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~------g-~----~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~  177 (289)
                      ...+..|+ |+.+++||+ +|+++.. ..+..++ ..      | +    .+......|   ..|..+++++||++|++.
T Consensus       273 Ipvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~~dG~aY~t~  348 (595)
T 1fwx_A          273 IPIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFDGRGNAYTSL  348 (595)
T ss_dssp             EEEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEECTTSEEEEEE
T ss_pred             EecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEECCCCeEEEEE
Confidence            33456799 999999996 7777644 5677777 31      1 1    122222222   468999999999999986


Q ss_pred             CCCccCccccccccceecCCCEEEEEeCCC----------CeEEEeeCCCCCc------ceEEEecCCCEEEEEeCCC-C
Q 022967          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----------NETSILLDSLFFA------NGVALSKDEDYLVVCETFK-F  240 (289)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~----------~~~~~~~~~~~~p------~gl~~~~d~~~l~v~~~~~-~  240 (289)
                      .-                 .+.|.++|.++          .++..-.+-...|      .|+++++||++||+++... .
T Consensus       349 ~l-----------------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          349 FL-----------------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             TT-----------------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred             ec-----------------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence            43                 34566666543          1221112222233      5677899999999999877 6


Q ss_pred             eE-----------EEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967          241 RC-----------LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (289)
Q Consensus       241 ~i-----------~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  277 (289)
                      |+           ..||++++++.-......  ...|....++....|
T Consensus       412 r~~~~gp~~~~~~ql~dis~~~m~lv~d~p~--~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          412 RFLNVGPLKPENDQLIDISGDKMVLVHDGPT--FAEPHDAIAVHPSIL  457 (595)
T ss_dssp             SSCCCCSSCCEEEEEEECSSSSCEEEEEEEE--SSCCCCEEEECTTTT
T ss_pred             ccccCCCCCCCcceEEEcCCCcEEEEEEEcC--CCCCCceEEccHHHc
Confidence            66           889998766543222221  356888777765543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.66  E-value=1.9e-05  Score=67.44  Aligned_cols=179  Identities=14%  Similarity=0.109  Sum_probs=112.8

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--eEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~~~~  150 (289)
                      ....+++.++|+.. ++..++.|..++ .+++........ .... .+++.++|+++++. ....|..+| .++  +..+
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~  202 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL  202 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE-EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            45578999988866 666889999998 445433222222 3345 89999999866654 334567777 566  3333


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~  229 (289)
                      .. .    ......+++.|+|.+.++...                 .+.|..+|.++++...... .......++|+|++
T Consensus       203 ~~-h----~~~v~~l~~spd~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~  260 (321)
T 3ow8_A          203 EG-H----AMPIRSLTFSPDSQLLVTASD-----------------DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD  260 (321)
T ss_dssp             CC-C----SSCCCEEEECTTSCEEEEECT-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             cc-c----CCceeEEEEcCCCCEEEEEcC-----------------CCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence            11 1    124678999999987776432                 3668888877665543333 33445789999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +.|+.+ ...+.|..||+.....  ...+. ........++...+|...++...
T Consensus       261 ~~l~s~-s~D~~v~iwd~~~~~~--~~~~~-~h~~~v~~v~~s~~g~~l~s~~~  310 (321)
T 3ow8_A          261 THFVSS-SSDKSVKVWDVGTRTC--VHTFF-DHQDQVWGVKYNGNGSKIVSVGD  310 (321)
T ss_dssp             SEEEEE-ETTSCEEEEETTTTEE--EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEE-eCCCcEEEEeCCCCEE--EEEEc-CCCCcEEEEEECCCCCEEEEEeC
Confidence            966555 4568899998764321  12222 22234566888888876665543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.65  E-value=3.1e-05  Score=66.11  Aligned_cols=179  Identities=15%  Similarity=0.118  Sum_probs=111.4

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-e-EE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-V-TV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~-~~  149 (289)
                      ..-.++++.+++.+. .+..++.|..++ .+++.. .+........ .+++.++|+.+++... ..+..++ ..+ . ..
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            345567788877766 566889999999 455433 3333334455 8999999987766544 4466666 555 2 22


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d  228 (289)
                      +..  .   ......+++.|+|++.++...                 .+.|..+|..+++......+ ......++|+|+
T Consensus       160 ~~~--~---~~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd  217 (321)
T 3ow8_A          160 LDT--R---GKFILSIAYSPDGKYLASGAI-----------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD  217 (321)
T ss_dssp             EEC--S---SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTT
T ss_pred             ecC--C---CceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCC
Confidence            211  1   124668999999986665432                 46788889887765544443 334578999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++.|..+ ...+.|..||+.....  ...+ .........+++.++|.+.++..
T Consensus       218 ~~~l~s~-s~dg~i~iwd~~~~~~--~~~~-~~h~~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          218 SQLLVTA-SDDGYIKIYDVQHANL--AGTL-SGHASWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             SCEEEEE-CTTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEE-cCCCeEEEEECCCcce--eEEE-cCCCCceEEEEECCCCCEEEEEe
Confidence            9955544 5668899999764322  1112 12223345677777776655543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.62  E-value=5.9e-06  Score=68.40  Aligned_cols=160  Identities=10%  Similarity=0.048  Sum_probs=96.5

Q ss_pred             cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CC-C-eEEEEeccCCccccCccceEEcCC
Q 022967           95 RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-G-VTVLASHVNGSRINLADDLIAATD  170 (289)
Q Consensus        95 ~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~-g-~~~~~~~~~~~~~~~~~~l~~~~d  170 (289)
                      .++.|+.++ .+++...+........ .+++.++|+.+++.....|+.++ .+ + ...+...   .....+.++++.||
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~spd   95 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG---FATICNNDHGISPD   95 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT---TCCCBCSCCEECTT
T ss_pred             cceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc---cccccccceEECCC
Confidence            456788888 4555555555455566 89999999866655456788888 66 6 5443221   11234678999999


Q ss_pred             CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE--ec
Q 022967          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW--LK  248 (289)
Q Consensus       171 G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~--~~  248 (289)
                      |..++....             .......|+.++.+++....+... .....++|+||++.|+++......+..|+  ..
T Consensus        96 g~~l~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           96 GALYAISDK-------------VEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             SSEEEEEEC-------------TTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCEEEEEEe-------------CCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            974444321             001246899999877765554333 23677899999998886654445444444  43


Q ss_pred             CCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          249 GESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       249 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      +...   ..+. .....+..+..+++|.
T Consensus       162 ~~~~---~~~~-~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          162 SGVE---TRLT-HGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             TCCE---EECC-CSSSCEEEEEECTTSS
T ss_pred             CCcc---eEcc-cCCCccccceECCCCC
Confidence            3221   1111 2223445567777775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.60  E-value=3e-05  Score=65.41  Aligned_cols=180  Identities=16%  Similarity=0.154  Sum_probs=110.6

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~  149 (289)
                      ....++++.++|++. ++..++.|..++ .+++........ .... .+++.++++++++... ..+..++ .++  +..
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  102 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT  102 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            456778999988865 666889999998 466654433322 3344 8999999886665433 4466667 555  333


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d  228 (289)
                      +...     ......+.+.|++.+.++...                 .+.|..+|.++++...... .......++++++
T Consensus       103 ~~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A          103 LKGH-----SNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             EECC-----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EcCC-----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            3211     124567889999987665432                 3678888887665443333 2334567899999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++.++.+ ...+.|..||+.....  ...+..........++++.+|.+.++..
T Consensus       161 ~~~l~~~-~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          161 GSLIVSS-SYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             SSEEEEE-ETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEE-eCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            9966665 4457899998764321  1122211112234477777776555443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.57  E-value=1.9e-05  Score=72.55  Aligned_cols=177  Identities=14%  Similarity=0.152  Sum_probs=109.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCceEEeee-ecCcCccCeEEcCCCcEEEEe-CCCceEEEeCCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~~~g--~~~~~  151 (289)
                      ....++++.++|... ++..++.|..++.+++...... ...... ++++.++|+++++. .+..+..++.++  ...+.
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~  423 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  423 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEec
Confidence            345678899988766 6668888988887776433322 233445 89999999765554 334456666555  44432


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      .. .    ....++++.||+.+.++...                 .+.|..++..+.....+.........++|+||++.
T Consensus       424 ~~-~----~~v~~~~~s~d~~~l~~~~~-----------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          424 GH-S----SSVWGVAFSPDDQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             CC-S----SCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CC-C----CCeEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            21 1    24568899999986665432                 36677788765555555444455678999999996


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      |..+ ...+.|..|+.++...   ..+. ........+++.++|++.++.
T Consensus       482 las~-~~d~~i~iw~~~~~~~---~~~~-~h~~~v~~l~~s~dg~~l~s~  526 (577)
T 2ymu_A          482 IASA-SDDKTVKLWNRNGQLL---QTLT-GHSSSVRGVAFSPDGQTIASA  526 (577)
T ss_dssp             EEEE-ETTSEEEEEETTSCEE---EEEE-CCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEE-eCCCEEEEEcCCCCEE---EEEe-CCCCCEEEEEEcCCCCEEEEE
Confidence            6555 4557898888654321   1222 222334567777777654443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.55  E-value=1.4e-06  Score=80.73  Aligned_cols=180  Identities=11%  Similarity=0.025  Sum_probs=104.5

Q ss_pred             cceEEEccCCCEEEEec---CC--eEEEEec--CCceEEeeeecCcCccCeEEcCCC--cEEEEeCCCceEEEe-CCC-e
Q 022967           79 PEDVCVDRNGVLYTATR---DG--WIKRLHK--NGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG-V  147 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~---~g--~i~~~~~--~g~~~~~~~~~~~p~~gl~~d~~g--~l~v~~~~~~i~~~~-~~g-~  147 (289)
                      ...+++.||..+|+++.   +.  +|+.++.  +|....+....+ .. ..++.++|  .+|++....++..++ .+| .
T Consensus        67 ~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~-~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~  144 (582)
T 3o4h_A           67 VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP-MR-ILSGVDTGEAVVFTGATEDRVALYALDGGGL  144 (582)
T ss_dssp             ECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCS-BE-EEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred             cccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCC-ce-eeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence            34566667733444443   22  5666775  665443322111 11 23444444  466665555666677 666 5


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      +.+... .     . .+++++|||+..++...             .......|+.+|.++++.+.+.........++|+|
T Consensus       145 ~~l~~~-~-----~-~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp  204 (582)
T 3o4h_A          145 RELARL-P-----G-FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP  204 (582)
T ss_dssp             EEEEEE-S-----S-CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT
T ss_pred             EEeecC-C-----C-ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeecCCCccccceECC
Confidence            555432 1     1 68899999975553221             00112469999988888776655444557899999


Q ss_pred             CCCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCcee--------eCCCCCEEEEEeCc
Q 022967          228 DEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIK--------LAPDGSFWIAILQV  284 (289)
Q Consensus       228 d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~--------~d~~G~lwv~~~~g  284 (289)
                      ||+.|+.++... ..|+++|+++....    ........+.+++        .++||.+++.....
T Consensus       205 DG~~l~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          205 GMKVTAGLETAREARLVTVDPRDGSVE----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             TSCEEEEEECSSCEEEEEECTTTCCEE----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             CCCEEEEccCCCeeEEEEEcCCCCcEE----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            999998665542 37999988764321    2222222334455        88888777766543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.55  E-value=2.4e-05  Score=68.54  Aligned_cols=96  Identities=13%  Similarity=0.068  Sum_probs=62.3

Q ss_pred             eEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC-EEEEEeCCCCeE
Q 022967          165 LIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCETFKFRC  242 (289)
Q Consensus       165 l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~-~l~v~~~~~~~i  242 (289)
                      +++++|| ++|++......+        ......+.|+.+|.++++..........|.++++++||+ .+|+++...+.|
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~--------~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAW--------KLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             EEECCCCCEEEEEeccCCcc--------cccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence            7888886 688875310000        000123579999998877644434444799999999999 788887778999


Q ss_pred             EEEEecCCCCcceeeeeccCCCCCCceee
Q 022967          243 LKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  271 (289)
                      .+||..+.+...  ... .....|.+|..
T Consensus       344 ~ViD~~t~~vv~--~i~-~vG~~P~~~~~  369 (373)
T 2mad_H          344 HIYDAGAGDQDQ--STV-ELGSGPQVLSV  369 (373)
T ss_pred             EEEECCCCCEEe--eec-CCCCCCcEEEE
Confidence            999987543321  111 23346777664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.54  E-value=8.6e-06  Score=72.54  Aligned_cols=153  Identities=11%  Similarity=0.013  Sum_probs=96.5

Q ss_pred             CCcceEEEcc-CCCE-EEEecCCeEEEEec-CCceEEeee---ecCcCccCeEEcC-CCcEEEEeCC-CceEEEe-CCC-
Q 022967           77 NGPEDVCVDR-NGVL-YTATRDGWIKRLHK-NGTWENWKL---IGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EEG-  146 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l-~v~~~~g~i~~~~~-~g~~~~~~~---~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~-~~g-  146 (289)
                      ..-.+|++.| ++++ .++..+|.|..|+. .++......   ..+... +|+|.+ +++++++... ..|..+| ..+ 
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            3457899988 5554 47889999999983 343322221   223344 899985 6666665444 4466667 445 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      ...+.....  .......+++.++|.+.++...                 .+.|..+|.+++....+.........++|+
T Consensus       199 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          199 LRVFASSDT--INIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EEEEECCSS--CSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCBCCCSBCCSSCEEEEEEC
T ss_pred             eeEEeccCC--CCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcceeEEEecccceEEeeeec
Confidence            544433211  1123567899999987766432                 467888888755443333333445788999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      |+++.++++....+.|..||+..
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTT
T ss_pred             CCCceEEEEecCcceeeEEeccc
Confidence            99887777666678888898764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.54  E-value=2.2e-05  Score=68.26  Aligned_cols=185  Identities=10%  Similarity=-0.016  Sum_probs=113.5

Q ss_pred             CCcceEEEccCC-CEE-EEecCCeEEEEe-cCCceEEeee---ecCcCccCeEEcC-CCcEEEE-eCCCceEEEe-CCC-
Q 022967           77 NGPEDVCVDRNG-VLY-TATRDGWIKRLH-KNGTWENWKL---IGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~-v~~~~g~i~~~~-~~g~~~~~~~---~~~~p~~gl~~d~-~g~l~v~-~~~~~i~~~~-~~g-  146 (289)
                      ....++++.++| +++ ++..+|.|..++ .+++......   ...... .+++.+ +++++++ .....+..++ .+. 
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            456778999987 554 777889999999 3444433322   223344 889988 5555554 4434566667 434 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      ...+.....  .......+++.+++.+.++...                 .+.|..+|.++.....+.........++|+
T Consensus       153 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          153 IQVFAKTDS--WDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEEEECCCC--SSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTSCEEEEEECSSSCEEEEEEC
T ss_pred             eEEEeccCC--CCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCCCEEEEeccCCCcEEEEEEC
Confidence            444432111  1134678999999986665432                 477888888655555555445567889999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCceeeCC-CCCEEEEEe
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAP-DGSFWIAIL  282 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~~  282 (289)
                      |+++.++++....+.|..||+..... ....... ........+++++ +|.+.++..
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            99984455545668999999875321 1111111 2234556788888 886555443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.52  E-value=3.3e-05  Score=66.36  Aligned_cols=175  Identities=11%  Similarity=0.123  Sum_probs=108.0

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEec
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~  153 (289)
                      .++.+.+++.++++..++.|..++ .+++... +....+... .+++.++++++++... ..+..+| .++  ...+...
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE-EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence            345666677788888889999998 4554332 222233445 8999999987776443 4566777 556  3333211


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC---CCCcceEEEecCCC
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANGVALSKDED  230 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~---~~~p~gl~~~~d~~  230 (289)
                           ......+++.|+|.++++...                 .+.|..+|..+++.......   ......++|+|+++
T Consensus       226 -----~~~v~~v~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          226 -----ESDINAICFFPNGNAFATGSD-----------------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             -----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             -----cCCEEEEEEcCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence                 124678999999987776432                 36677888776554332221   12346789999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      .|..+ ...+.|..||......  ...+. ...+....+++.++|.+.++.
T Consensus       284 ~l~~g-~~d~~i~vwd~~~~~~--~~~~~-~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          284 LLLAG-YDDFNCNVWDALKADR--AGVLA-GHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEE-ETTSEEEEEETTTCCE--EEEEE-CCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEE-CCCCeEEEEEcccCcE--eeEee-cCCCcEEEEEEcCCCCEEEEE
Confidence            66665 4568899998754321  12222 222345567888888654443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.51  E-value=1.7e-05  Score=74.88  Aligned_cols=163  Identities=13%  Similarity=0.111  Sum_probs=92.0

Q ss_pred             CeEEEEec-CCceEEeeee---cCcCccCeEEcCCCc-EEEEeCCC-----ceEEEe-CCC--eEEEEeccCCccccCcc
Q 022967           97 GWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENE-ILVCDADK-----GLLKVT-EEG--VTVLASHVNGSRINLAD  163 (289)
Q Consensus        97 g~i~~~~~-~g~~~~~~~~---~~~p~~gl~~d~~g~-l~v~~~~~-----~i~~~~-~~g--~~~~~~~~~~~~~~~~~  163 (289)
                      ..|+.++. +|+.......   ...+. .+++.+||+ |+++....     .++.++ .+|  .+.+.............
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLT-NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEE-EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEe-eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            56788884 4444333221   12234 788999997 66543222     578888 555  33333221111111236


Q ss_pred             ceEEcC--CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce-EEEecCCCEEEEEeCCCC
Q 022967          164 DLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG-VALSKDEDYLVVCETFKF  240 (289)
Q Consensus       164 ~l~~~~--dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g-l~~~~d~~~l~v~~~~~~  240 (289)
                      ++++.|  ||+++++...               .....||.++.+++....+..+...... ++|+||++.||++.....
T Consensus       314 ~~~~sp~~dg~~l~~~~~---------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRR---------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             CCEECTTCSSEEEEEECT---------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CceeecCCCCEEEEEEcc---------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            789999  9975554321               1235799999776666655443333334 789999999998876644


Q ss_pred             ----eEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          241 ----RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       241 ----~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                          .|++++.++....   .+. . ......+++..+|..++.
T Consensus       379 ~~~~~l~~~d~~~~~~~---~l~-~-~~~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          379 PLERHFYCIDIKGGKTK---DLT-P-ESGMHRTQLSPDGSAIID  417 (706)
T ss_dssp             TTCBEEEEEETTCCCCE---ESC-C-SSSEEEEEECTTSSEEEE
T ss_pred             CceEEEEEEEcCCCCce---ecc-C-CCceEEEEECCCCCEEEE
Confidence                7888887654321   111 1 122344666677754443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.50  E-value=3e-05  Score=67.70  Aligned_cols=188  Identities=10%  Similarity=0.048  Sum_probs=116.8

Q ss_pred             CCcceEEEc-cCCCEEEEecC---C---eEEEEec---------CCce-EEeee--ec---CcCccCeEEcCCCcEEEEe
Q 022967           77 NGPEDVCVD-RNGVLYTATRD---G---WIKRLHK---------NGTW-ENWKL--IG---GDTLLGITTTQENEILVCD  134 (289)
Q Consensus        77 ~~p~~l~~d-~~g~l~v~~~~---g---~i~~~~~---------~g~~-~~~~~--~~---~~p~~gl~~d~~g~l~v~~  134 (289)
                      .-|.++++| .+|++|++...   |   .+-.++.         ++.+ ..+..  .+   -.+. ++.+|+.|+|||.|
T Consensus        26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLD  104 (381)
T 3q6k_A           26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVD  104 (381)
T ss_dssp             CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEE
T ss_pred             cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEe
Confidence            358889995 79999998733   2   3555552         2244 44432  12   2345 88899999999998


Q ss_pred             CCC----------------ceEEEe--CC--C-eEEEEec-cCCccccCccceEEc-C-------CCcEEEeeCCCccCc
Q 022967          135 ADK----------------GLLKVT--EE--G-VTVLASH-VNGSRINLADDLIAA-T-------DGSIYFSVASTKFGL  184 (289)
Q Consensus       135 ~~~----------------~i~~~~--~~--g-~~~~~~~-~~~~~~~~~~~l~~~-~-------dG~lyv~~~~~~~~~  184 (289)
                      .+.                .|+.+|  .+  . ++.+.-. ..-.+....++|++| .       ++.+|++|..     
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~-----  179 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL-----  179 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT-----
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC-----
Confidence            651                267788  34  4 4444221 111122457789999 2       4679999964     


Q ss_pred             cccccccceecCCCEEEEEeCCCCeEEEeeC--------------C-----CCCcceEEEecC----CCEEEEEeCCCCe
Q 022967          185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------S-----LFFANGVALSKD----EDYLVVCETFKFR  241 (289)
Q Consensus       185 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--------------~-----~~~p~gl~~~~d----~~~l~v~~~~~~~  241 (289)
                                  ..+|+.||..+++.-.+..              +     .....||+++|+    +++||+.-..+.+
T Consensus       180 ------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          180 ------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             ------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             ------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence                        2567777776665433321              1     135578899998    8999999999889


Q ss_pred             EEEEEec---CCCC-cceeeeeccCCCCCC--ceeeC-CCCCEEEEEeC
Q 022967          242 CLKYWLK---GESK-EQTEIFVENLPGGPD--NIKLA-PDGSFWIAILQ  283 (289)
Q Consensus       242 i~~~~~~---~~~~-~~~~~~~~~~~~~p~--~i~~d-~~G~lwv~~~~  283 (289)
                      ++++..+   ...+ ...+.+.+..+ ..+  ++++| ++|+||++...
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~~~~D~~~G~ly~~~~~  295 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGNRGK-YNDAIALAYDPKTKVIFFAEAN  295 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEECCT-TCCEEEEEECTTTCEEEEEESS
T ss_pred             EEEEEHHHhhCcchhhceEEeeecCC-CCCcceEEEeCCCCeEEEEecc
Confidence            9998742   2222 22233322211 123  46776 88999998753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.50  E-value=3.4e-06  Score=77.45  Aligned_cols=191  Identities=10%  Similarity=0.105  Sum_probs=113.1

Q ss_pred             CC-CEEEEe-cCCeEEEEec-CCceEEeeee--cCcCccCeEEc--CCC-cEEEEeC-----------------C-CceE
Q 022967           87 NG-VLYTAT-RDGWIKRLHK-NGTWENWKLI--GGDTLLGITTT--QEN-EILVCDA-----------------D-KGLL  140 (289)
Q Consensus        87 ~g-~l~v~~-~~g~i~~~~~-~g~~~~~~~~--~~~p~~gl~~d--~~g-~l~v~~~-----------------~-~~i~  140 (289)
                      || .+|+.+ .+++|.++|. +.+...+...  ...|+ |+++.  +++ .+|++..                 + +.+-
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            44 578766 5789999994 4454443332  34588 99983  555 5777741                 1 1244


Q ss_pred             EEe-CCCeEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcc---------ccc--------cccc-ee--cCCC
Q 022967          141 KVT-EEGVTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLH---------NWG--------LDLL-EA--KPHG  198 (289)
Q Consensus       141 ~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~---------~~~--------~~~~-~~--~~~g  198 (289)
                      .+| +.. ++......+   ..|.++++++||. +|++...+.-+..         ++.        .... .+  ...+
T Consensus       179 vID~~t~-~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTT-EEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCC-eEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            455 333 111111111   1478999999985 7777654322100         110        0000 00  0114


Q ss_pred             EEEEEeCCC--CeE-EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC------CCcce-eeee-ccCCCCCC
Q 022967          199 KLLKYDPSL--NET-SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE------SKEQT-EIFV-ENLPGGPD  267 (289)
Q Consensus       199 ~i~~~~~~~--~~~-~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~------~~~~~-~~~~-~~~~~~p~  267 (289)
                      .|-.+|..+  ++. .....-...|.|+.++|||+++|+++....+|.+||.+..      ++... .... ......|.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            588899876  332 2233334689999999999999999999999999998732      11111 1111 13335799


Q ss_pred             ceeeCCCCCEEEEEe
Q 022967          268 NIKLAPDGSFWIAIL  282 (289)
Q Consensus       268 ~i~~d~~G~lwv~~~  282 (289)
                      .+++|.+|++|++..
T Consensus       335 h~aF~~dG~aY~t~~  349 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLF  349 (595)
T ss_dssp             EEEECTTSEEEEEET
T ss_pred             eEEECCCCeEEEEEe
Confidence            999999999898864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.49  E-value=3.6e-05  Score=66.21  Aligned_cols=185  Identities=10%  Similarity=-0.055  Sum_probs=107.6

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEe---eeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--e
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENW---KLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--V  147 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~---~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~  147 (289)
                      ....++++.++|++. ++..++.|..++ .+++....   ........ .+++.++++++++ .....+..++ ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            345678999988765 666889999998 45543222   12223345 8999988875554 4434455555 333  2


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC------------------CCe
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS------------------LNE  209 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~------------------~~~  209 (289)
                      ...... ..........+++.++|.++++...                 .+.|..+|..                  .++
T Consensus       132 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEE-CTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeeee-ecccCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccccccccccccccccchhh
Confidence            222111 1111235678999999976665432                 3566677732                  233


Q ss_pred             E-EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          210 T-SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       210 ~-~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      . ..+.........++++|+++.|+.+. ..+.|..||+.....  ...+. ........++...+|.+.++..++
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~  265 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMA--VATLA-SETLPLLAVTFITESSLVAAGHDC  265 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTE--EEEEE-CSSCCEEEEEEEETTEEEEEETTS
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCce--eEEEc-cCCCCeEEEEEecCCCEEEEEeCC
Confidence            3 23333334567899999999776664 558899999864322  12221 112234567777777766655443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.48  E-value=3.3e-05  Score=68.51  Aligned_cols=156  Identities=13%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             CeEEEEecCC-ceEEeeeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe-CCC-eEEEEeccCCccccCccceEEcC
Q 022967           97 GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (289)
Q Consensus        97 g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~  169 (289)
                      +.|+.++.+| ....+........ .+++.++|+ |+++...   ..|+.++ .+| ...+... .    .....+++.|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcC
Confidence            6788888655 3444444444556 899999997 4444433   2588888 666 5444321 1    2456889999


Q ss_pred             CCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC--CCeEEEEE
Q 022967          170 DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYW  246 (289)
Q Consensus       170 dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~--~~~i~~~~  246 (289)
                      ||+ |+++...               .....|+.+|.++++...+.........++|+||++.|+++...  ..+|++++
T Consensus       233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            997 6655422               12356999999888776665444456778999999988877542  34789888


Q ss_pred             ecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967          247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (289)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  277 (289)
                      +++....   .+. ........++...+|..
T Consensus       298 ~~~~~~~---~l~-~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          298 INGGAPQ---RIT-WEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             TTSSCCE---ECC-CSSSEEEEEEECTTSSE
T ss_pred             CCCCCEE---EEe-cCCCcccCeEECCCCCE
Confidence            7754321   111 11123344666777753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.48  E-value=9.8e-05  Score=63.11  Aligned_cols=183  Identities=15%  Similarity=0.145  Sum_probs=106.8

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~~~  149 (289)
                      ....++++.++|++. ++..+|.|..++ .+++...... ...... .+++.++++++++. ....|..++ .++  ...
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            456789999988765 667889999998 5565433322 333445 89999988766554 434577777 556  333


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe------------EEEee--C
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------TSILL--D  215 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~------------~~~~~--~  215 (289)
                      +.  ..    ..+..+++.++|..+++....            .....+.|..+|...+.            ...+.  .
T Consensus       112 ~~--~~----~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B          112 WK--SP----VPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             EE--CS----SCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             ee--cC----CCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            32  11    246789999999766554320            00011445555533221            11111  1


Q ss_pred             CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       216 ~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      +......++++++++.|+++. ..+.|..||+.... .....+. ........+++..+|.+.++.
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~  236 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITS  236 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             CccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEe
Confidence            122567789999999777764 45889999986421 1111121 222345667888888654444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.48  E-value=4e-05  Score=67.22  Aligned_cols=157  Identities=13%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             CCcceEEEccCC-CEE-EEecCCeEEEEe-cCCceEEee--e-ecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC--
Q 022967           77 NGPEDVCVDRNG-VLY-TATRDGWIKRLH-KNGTWENWK--L-IGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--  146 (289)
Q Consensus        77 ~~p~~l~~d~~g-~l~-v~~~~g~i~~~~-~~g~~~~~~--~-~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g--  146 (289)
                      ....++++.++| +++ ++..++.|..++ .+++.....  . ...... .+++.++|.+++ +..+..+..+| .++  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            445678999986 454 667889999999 455433222  2 223345 899998887555 44445577777 556  


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE--EEe-eCCCCCcceE
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SIL-LDSLFFANGV  223 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~~~-~~~~~~p~gl  223 (289)
                      +..+.....   ...+..+++.++|.++++...              ....+.|..+|..+++.  ... .........+
T Consensus       211 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDRPHE---GTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEECSSC---SSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeeccCCC---CCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            333312111   123568899999987665410              00246788888765432  122 2334456788


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      +++++++.|+++....+.|..|++....
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            9999999998887777899999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.46  E-value=6.7e-05  Score=65.78  Aligned_cols=180  Identities=11%  Similarity=0.006  Sum_probs=108.2

Q ss_pred             CcceEEEcc-CCCEE-EEecCCeEEEEe-cCCc--------eEEeeeecCcCccCeEEcCCC-cEEEE-eCCCceEEEe-
Q 022967           78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EILVC-DADKGLLKVT-  143 (289)
Q Consensus        78 ~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~l~v~-~~~~~i~~~~-  143 (289)
                      ...++++.+ +++++ ++..+|.|..++ .++.        ...+........ .+++.+++ +++++ ..+..|..+| 
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            456789988 77766 666889999998 3432        222332334445 89999987 55554 4445577778 


Q ss_pred             CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCC--C
Q 022967          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSL--F  218 (289)
Q Consensus       144 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~--~  218 (289)
                      .++  ...+....   .......+++.++|.++++...                 .+.|..+|.++++..... ...  .
T Consensus       162 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~  221 (402)
T 2aq5_A          162 GTGAAVLTLGPDV---HPDTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTVVAEKDRPHEGT  221 (402)
T ss_dssp             TTTEEEEEECTTT---CCSCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCSS
T ss_pred             CCCCccEEEecCC---CCCceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCceeeeeccCCCCC
Confidence            566  33331010   1124678999999975555322                 478899998877654433 222  2


Q ss_pred             CcceEEEecCCCEEEEEe--CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967          219 FANGVALSKDEDYLVVCE--TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  279 (289)
                      .+..++|+++++.|+++.  ...+.|..||+............ ........++.+.+|.+.+
T Consensus       222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  283 (402)
T 2aq5_A          222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVY  283 (402)
T ss_dssp             SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEE
T ss_pred             cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEE
Confidence            357889999988555542  45678999998653221111111 1123355677777776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.46  E-value=1.6e-06  Score=69.51  Aligned_cols=156  Identities=13%  Similarity=0.037  Sum_probs=95.4

Q ss_pred             cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEec-CCc-------eEEeeeec-CcCccCeEEcCCCcEEEEeCC
Q 022967           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-------WENWKLIG-GDTLLGITTTQENEILVCDAD  136 (289)
Q Consensus        66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~-------~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~  136 (289)
                      .++.++..+.+....+++++|+|.||+. .+|.+++.++ ++.       .+.+.... ..=. .+.||++|.||++.. 
T Consensus        30 ~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~-a~~fD~~G~LYav~d-  106 (236)
T 1tl2_A           30 ARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYLYAVSK-  106 (236)
T ss_dssp             HHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCEEEEET-
T ss_pred             hhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce-EEEECCCCCEEEeCC-
Confidence            4567777755778889999999999966 8889999984 422       12221111 1113 688999999999954 


Q ss_pred             CceEEEe-C-CC-eEEEEe--ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-CC--
Q 022967          137 KGLLKVT-E-EG-VTVLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN--  208 (289)
Q Consensus       137 ~~i~~~~-~-~g-~~~~~~--~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~--  208 (289)
                      ..|+|++ + ++ -..+..  .+..........|.++|+|.||..+ .                  +.+++-.+- +.  
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d------------------g~lyr~~~P~~~~~  167 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G------------------QQFYKALPPVSNQD  167 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T------------------TEEEEECCCSSTTC
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C------------------CcEEecCCCCCCCc
Confidence            6699998 3 33 211111  1111122334688999999999886 3                  455553322 11  


Q ss_pred             ----eEEEee-CCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          209 ----ETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       209 ----~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                          ..+.+. .+...-.-+.+++++. ||.++  +.++++..
T Consensus       168 ~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          168 NWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDY  207 (236)
T ss_dssp             CHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEES
T ss_pred             ccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecC
Confidence                112222 2322233366888887 77776  57888763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.44  E-value=1.5e-05  Score=69.93  Aligned_cols=173  Identities=14%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             EEEEecCCeEEEEe-c-CCceEEee----eecCcCc-cCeEEc-CCCcEEEEeCCCceEEEe-CCC-eEEEEecc-----
Q 022967           90 LYTATRDGWIKRLH-K-NGTWENWK----LIGGDTL-LGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASHV-----  154 (289)
Q Consensus        90 l~v~~~~g~i~~~~-~-~g~~~~~~----~~~~~p~-~gl~~d-~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~-----  154 (289)
                      ++..+.+|++..++ . +|+.....    .....+. ...+++ ++|++|+...+..++.+| .++ .+++....     
T Consensus       192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~  271 (386)
T 3sjl_D          192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  271 (386)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence            33555777777776 2 25442111    1112233 024554 678765554456688888 434 44332111     


Q ss_pred             ---CCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          155 ---NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       155 ---~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                         .+..-.....+++++++ ++|++......+.        ...+...|+.+|.++++......-...+.++++++|++
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~--------hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~  343 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR--------HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK  343 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC--------TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccc--------cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence               11111223357888876 7999753100000        00123579999999887665444335688999999997


Q ss_pred             -EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          231 -YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       231 -~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                       .||+++...+.|.+||....+..  . -+ ..++.|..|.+..|
T Consensus       344 ~~ly~tn~~~~~VsViD~~t~k~~--~-~i-~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          344 PLLYALSTGDKTLYIHDAESGEEL--R-SV-NQLGHGPQVITTAD  384 (386)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCEE--E-EE-CCCCSSCCEEEECC
T ss_pred             eEEEEEcCCCCeEEEEECCCCcEE--E-Ee-cCCCCCceeEECCc
Confidence             89999988899999997643321  1 12 34467888877655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.43  E-value=7.9e-05  Score=64.15  Aligned_cols=182  Identities=11%  Similarity=0.099  Sum_probs=102.1

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEec-CCceE-E--eeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE-N--WKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~-~--~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g-~~~~  150 (289)
                      -..+++.|+|.+. ++..++.|..++. ++... .  .......+++.+++.++|+++++.. +..+..++ ..+ .+.+
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~   98 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV   98 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence            4578999988866 5668899999983 44322 1  1111222333899999998666543 34455555 334 3322


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-E---EEeeCCCCCcceEEEe
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-T---SILLDSLFFANGVALS  226 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~---~~~~~~~~~p~gl~~~  226 (289)
                      .. ..+. ......+++.|+|++.++...                 .+.|..+|.+++. .   ..+.........++|+
T Consensus        99 ~~-~~~h-~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           99 TT-LEGH-ENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             EE-ECCC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             EE-ccCC-CCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            11 1111 124678999999987766432                 3455555544332 1   1222233445778999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      |+++.|..+ ...+.|..|+...........+ .........++++++|++.++.
T Consensus       160 p~~~~l~s~-s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~  212 (345)
T 3fm0_A          160 PSQELLASA-SYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASC  212 (345)
T ss_dssp             SSSSCEEEE-ETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEE-eCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEE
Confidence            999966555 4557888888765321111111 1222334557777777655543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.43  E-value=3.1e-05  Score=73.17  Aligned_cols=171  Identities=11%  Similarity=0.027  Sum_probs=101.1

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CC-----C-eE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-----G-VT  148 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~-----g-~~  148 (289)
                      ..+.++++.+++.+.++ .++.|+.++ .+++...+........ .+++.+||+..+......|+.++ .+     | ..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            45778999999555554 458899999 4555555444444566 89999999744443446688888 66     6 44


Q ss_pred             EEEeccCC----------ccccCccceEEcCCCc-EEEeeCCCccCccccc----------------cccceecCCCEEE
Q 022967          149 VLASHVNG----------SRINLADDLIAATDGS-IYFSVASTKFGLHNWG----------------LDLLEAKPHGKLL  201 (289)
Q Consensus       149 ~~~~~~~~----------~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~----------------~~~~~~~~~g~i~  201 (289)
                      .+......          ..+..+.++.++|||+ |+++.... -+.....                ...-.......|+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            33221111          0111257899999996 55443100 0000000                0000011335799


Q ss_pred             EEeCCCCeEEEeeCC---CCCcceEEEecCCCEEEEEeCCC----CeEEEEEecCC
Q 022967          202 KYDPSLNETSILLDS---LFFANGVALSKDEDYLVVCETFK----FRCLKYWLKGE  250 (289)
Q Consensus       202 ~~~~~~~~~~~~~~~---~~~p~gl~~~~d~~~l~v~~~~~----~~i~~~~~~~~  250 (289)
                      .+|.++++...+...   ......++|+||++.|+++....    ..|+.+|+.+.
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            999988876655422   23356789999999888865432    37888887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.42  E-value=8.3e-05  Score=63.88  Aligned_cols=150  Identities=7%  Similarity=-0.020  Sum_probs=90.3

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCc---eEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT---WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTV  149 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~---~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~  149 (289)
                      .-.++++.++|++. ++..++.|..++ .+++   ...+........ .+++.++++++++ .....+..++ .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            35678999988866 666889999998 4453   223332333445 8999998876655 4334566677 555 322


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe----EEEeeC-CCCCcceEE
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLD-SLFFANGVA  224 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~-~~~~p~gl~  224 (289)
                      ......  ....+..+++.++|.++++...                 .+.|..+|.+.+.    ...+.. .......++
T Consensus        89 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVILR--INRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEECCC--CSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEeec--CCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            211111  1134678999999975554322                 2444444433332    222222 234567899


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEec
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      |+|+++.++.+. ..+.|..||+.
T Consensus       150 ~~~~~~~l~~~~-~dg~i~~~d~~  172 (372)
T 1k8k_C          150 WHPNSVLLAAGS-CDFKCRIFSAY  172 (372)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEECC
T ss_pred             EcCCCCEEEEEc-CCCCEEEEEcc
Confidence            999999666664 45789999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.42  E-value=2.4e-05  Score=68.17  Aligned_cols=89  Identities=11%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             CCEEEEe------cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeC----------CCceEEEe-CCC--
Q 022967           88 GVLYTAT------RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG--  146 (289)
Q Consensus        88 g~l~v~~------~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~----------~~~i~~~~-~~g--  146 (289)
                      ..+|+.+      .++.|+++| .+++..........|  ++++++||+ +|+++.          .+.|..+| ..+  
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            3577665      256899999 566654333323334  799999985 888863          12378888 555  


Q ss_pred             eEEEEecc-CCccccCccceEEcCCC-cEEEeeC
Q 022967          147 VTVLASHV-NGSRINLADDLIAATDG-SIYFSVA  178 (289)
Q Consensus       147 ~~~~~~~~-~~~~~~~~~~l~~~~dG-~lyv~~~  178 (289)
                      ...+.... .......|.+++++||| .||+++.
T Consensus        94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A           94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             EEEEEcCccccccCCCcceEEECCCCCEEEEECC
Confidence            33332110 00012468899999999 5888763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.40  E-value=4.8e-05  Score=66.45  Aligned_cols=184  Identities=10%  Similarity=0.041  Sum_probs=109.4

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCCceEEeee-ecCcCccCeEEcCCCcEE-EEeCCCceEEEe-CCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~l~-v~~~~~~i~~~~-~~g--~~~~~  151 (289)
                      ...++++.++|.+. ++..+|.|..++.+++...... ...... .+++.++++.+ .+.....+..++ .++  ...+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            45678999988765 6778899999996665443333 233445 89999888744 455445677777 556  33322


Q ss_pred             eccCCc----------cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCc
Q 022967          152 SHVNGS----------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA  220 (289)
Q Consensus       152 ~~~~~~----------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p  220 (289)
                      ......          .......+.+.+++.++++..                  .+.|..+|..+++..... ......
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------------------KGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEECG------------------GGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------------------CCeEEEEEcCCCceeeeeccCCCce
Confidence            111000          001166788888887666542                  367888888765433222 233345


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ..++++++++.|+.+. ..+.|..|++.....  ...+. ........+....+|.++.+..++
T Consensus       251 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~  310 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNS--QNCFY-GHSQSIVSASWVGDDKVISCSMDG  310 (425)
T ss_dssp             EEEEEETTTTEEEEEE-TTSCEEEECSSSBSC--SEEEC-CCSSCEEEEEEETTTEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEc-CCCEEEEEECCCCcc--ceEec-CCCccEEEEEECCCCEEEEEeCCC
Confidence            7789999999666664 457899998764322  11221 222344567777777444444433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.40  E-value=9.8e-06  Score=70.38  Aligned_cols=153  Identities=17%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             cceEEEccCCCEEEEe-c------CCeEEEEe-cCCceE-----EeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-C
Q 022967           79 PEDVCVDRNGVLYTAT-R------DGWIKRLH-KNGTWE-----NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~-~------~g~i~~~~-~~g~~~-----~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~  144 (289)
                      -.++++.|||++.++. .      ++.|+.++ .++...     .......... .++|.+++.++++.....|..++ .
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~~  123 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEIL  123 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC---
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeecc
Confidence            4678999999988544 3      56777776 344211     1112223344 88999999888877655565556 4


Q ss_pred             CC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcc
Q 022967          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFAN  221 (289)
Q Consensus       145 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~  221 (289)
                      ++  .........+ -......+++.|+|+..++...                 .+.|..+|..+++......+ ....+
T Consensus       124 ~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          124 EKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGK-----------------DFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             -----CCCCEEECC-CSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            44  1111000011 0124678999999987766432                 36688888887765544333 34557


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .++++++++.++++....+.|..||+...
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~  214 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKP  214 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCC
Confidence            78999988766666666788999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.40  E-value=1.2e-05  Score=76.32  Aligned_cols=170  Identities=12%  Similarity=0.034  Sum_probs=96.7

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEe-cCC---ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNG---TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g---~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      ..++++.|||+..+...++.|+.++ .++   ....+........ .+++.+||+..+......|+.++ .+| ...+..
T Consensus       111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            4678999999855333348899999 445   4444433334455 89999999844433345788898 556 443322


Q ss_pred             ccCCc------------cccCccceEEcCCCc-EEEeeCCC-ccCcc-------------ccc-cccceecCCCEEEEEe
Q 022967          153 HVNGS------------RINLADDLIAATDGS-IYFSVAST-KFGLH-------------NWG-LDLLEAKPHGKLLKYD  204 (289)
Q Consensus       153 ~~~~~------------~~~~~~~l~~~~dG~-lyv~~~~~-~~~~~-------------~~~-~~~~~~~~~g~i~~~~  204 (289)
                      .....            .+..+.+++++|||+ |+++.... .....             ... ...-+......|+.+|
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            11100            011247899999996 66653210 00000             000 0000001122788889


Q ss_pred             CCC-CeEEEeeC---CCCCcceEEEecCCCEEEEEeC----CCCeEEEEEecCC
Q 022967          205 PSL-NETSILLD---SLFFANGVALSKDEDYLVVCET----FKFRCLKYWLKGE  250 (289)
Q Consensus       205 ~~~-~~~~~~~~---~~~~p~gl~~~~d~~~l~v~~~----~~~~i~~~~~~~~  250 (289)
                      .++ ++...+..   .......++| |||++|+++..    ....|+++|+.+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence            887 76655432   2234567899 99998887653    2356888887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.40  E-value=4.9e-05  Score=64.99  Aligned_cols=181  Identities=15%  Similarity=0.015  Sum_probs=107.5

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC------CceEEEe-CCC-
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~------~~i~~~~-~~g-  146 (289)
                      ....++++.+++++. ++..+|.|..++ .+++............ .+++.+++..+++...      ..+..++ ..+ 
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            345678999888765 666889999999 5565443333334455 8999999876655332      3455555 222 


Q ss_pred             -eEEEEecc--------CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEE-eeC
Q 022967          147 -VTVLASHV--------NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSI-LLD  215 (289)
Q Consensus       147 -~~~~~~~~--------~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~-~~~  215 (289)
                       ...+....        ..........+++.++|.+.++..                 ..+.|..+|..+ ++... +..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-----------------KDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-----------------TTSEEEEEETTTTTEEEEEEEC
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-----------------CCCEEEEEECCCCcEeEEEEec
Confidence             11111100        000111566888999987555432                 247888999876 34333 333


Q ss_pred             CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       216 ~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                      .......++|+|+++.|+.+. ..+.|..||+.....  ...+.  .......+++..+|.+.+.
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~  276 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQV--LKKYE--TDCPLNTAVITPLKEFIIL  276 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEE
T ss_pred             CCCceeEEEECCCCCEEEEec-CCceEEEEECCCCce--eeeec--CCCCceeEEecCCCceEEE
Confidence            344567899999999777664 458899999865322  11121  2233456777777755443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.38  E-value=3.2e-05  Score=67.35  Aligned_cols=168  Identities=12%  Similarity=0.068  Sum_probs=97.7

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecC---c--------CccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---D--------TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~---~--------p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      ++.+|++..++.|+.++ .+|+.........   .        ......+ .++.+|++....+++.++ .+| ......
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~  266 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKRE  266 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeecc
Confidence            67889988889999999 5776543222110   0        1102233 367899988667899999 677 433221


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~  230 (289)
                       ..     ...++.++ ++++|+++..                  +.|+.+|+++++..-.....  .......+  .++
T Consensus       267 -~~-----~~~~~~~~-~~~l~~~~~~------------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~  319 (376)
T 3q7m_A          267 -LG-----SVNDFIVD-GNRIYLVDQN------------------DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG  319 (376)
T ss_dssp             -CC-----CEEEEEEE-TTEEEEEETT------------------CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred             -CC-----CCCCceEE-CCEEEEEcCC------------------CeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence             11     22344444 7789998643                  67999999888764333311  12222333  245


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      .||+.+. .+.|+.+|..+.+........ . ........+ .+|++|+++.+|.+
T Consensus       320 ~l~v~~~-~g~l~~~d~~tG~~~~~~~~~-~-~~~~~~~~~-~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          320 NLVVGDS-EGYLHWINVEDGRFVAQQKVD-S-SGFQTEPVA-ADGKLLIQAKDGTV  371 (376)
T ss_dssp             EEEEECT-TSEEEEEETTTCCEEEEEECC-T-TCBCSCCEE-ETTEEEEEBTTSCE
T ss_pred             EEEEEeC-CCeEEEEECCCCcEEEEEecC-C-CcceeCCEE-ECCEEEEEeCCCEE
Confidence            6898854 578999997654332211110 1 111122233 46899999988765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.38  E-value=0.00028  Score=61.86  Aligned_cols=179  Identities=8%  Similarity=-0.021  Sum_probs=107.2

Q ss_pred             eEEEccCCCEEEEecCCeEEEEecC--Cc-eEEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEec
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLHKN--GT-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~~~--g~-~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      ++.++ ...++++..+|.|..++..  +. ...+....+... ++++.+++.++++ .....+..+| .++  ...+.. 
T Consensus       181 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-  257 (401)
T 4aez_A          181 CLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-  257 (401)
T ss_dssp             EEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-
T ss_pred             EEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-
Confidence            34443 2234466677888888832  22 223333334455 8999998876555 4445577777 555  332211 


Q ss_pred             cCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEE
Q 022967          154 VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l  232 (289)
                      .    ......+++.|+| .++++...               ...+.|..+|..+++.............++|+++++.+
T Consensus       258 ~----~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l  318 (401)
T 4aez_A          258 H----NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEI  318 (401)
T ss_dssp             C----SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred             C----cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeE
Confidence            1    1346789999977 56665421               02467888998777655444444567889999999977


Q ss_pred             EEEe-CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          233 VVCE-TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       233 ~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      +++. ...+.|..|++..........+. ...+....++...+|.+.++..
T Consensus       319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          319 MSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             EEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEEC
T ss_pred             EEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEe
Confidence            7763 35688999998754322221121 2224456678888887555443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.37  E-value=4.1e-05  Score=66.19  Aligned_cols=149  Identities=9%  Similarity=0.046  Sum_probs=95.4

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEe-cCCceE-Eee----eecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eE
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWK----LIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VT  148 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~----~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~  148 (289)
                      -.++++.+++.|.++..+|.|..|+ .+++.. ...    ...+... .++|.++|+++++... ..|..+| .++  +.
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4568888898888999999999998 445322 111    1123344 8999999987665433 4577777 666  33


Q ss_pred             EEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---CCCCCcceEE
Q 022967          149 VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DSLFFANGVA  224 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~p~gl~  224 (289)
                      .+...     ......+++.+++ .++++...                 .+.|..+|..+++.....   ........++
T Consensus       164 ~~~~h-----~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          164 SYRAH-----AAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EECCC-----SSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEcCc-----CCceEEEEecCCCCCceeeecc-----------------ccccccccccccceeeeeecceeeccceeee
Confidence            33211     1246688999987 46665432                 366778887766543321   1223457789


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++|++..++++....+.|..||+...
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCC
Confidence            99976657776666788999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=6.7e-05  Score=67.01  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=80.8

Q ss_pred             CeEEcCCCcEE-EEeCC-CceEEEe-C--CC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccce
Q 022967          121 GITTTQENEIL-VCDAD-KGLLKVT-E--EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (289)
Q Consensus       121 gl~~d~~g~l~-v~~~~-~~i~~~~-~--~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~  193 (289)
                      .+++.++|..+ ++... ..+..++ .  ++  ...+.....   ...+..+++.|+|...++..               
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~---------------  168 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---SKRPNAISIAEDDTTVIIAD---------------  168 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---SSCEEEEEECTTSSEEEEEE---------------
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---CCCceEEEEcCCCCEEEEEe---------------
Confidence            78899999764 54433 4455556 4  55  444432111   12467899999996544432               


Q ss_pred             ecCCCEEEEEeCCCCeEE-----EeeCCCCCcceEEEecC---CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCC
Q 022967          194 AKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG  265 (289)
Q Consensus       194 ~~~~g~i~~~~~~~~~~~-----~~~~~~~~p~gl~~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  265 (289)
                        ..+.++.++..+++..     .+.........++|+|+   ++.|+.+. ..+.|..||+.....  ...+.....+.
T Consensus       169 --~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vwd~~~~~~--~~~~~~~h~~~  243 (450)
T 2vdu_B          169 --KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKISHYPQCFI--VDKWLFGHKHF  243 (450)
T ss_dssp             --TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEEEESCTTC--EEEECCCCSSC
T ss_pred             --CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEEECCCCce--eeeeecCCCCc
Confidence              1367888887654432     12222344577899999   77666554 458899999875432  22222222344


Q ss_pred             CCceeeCCCCCEEEEEe
Q 022967          266 PDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       266 p~~i~~d~~G~lwv~~~  282 (289)
                      ...+++. +|.+.++..
T Consensus       244 v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             EEEEEEC-STTEEEEEE
T ss_pred             eEEEEEC-CCCEEEEEe
Confidence            5678888 776555443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=0.0001  Score=65.82  Aligned_cols=180  Identities=10%  Similarity=0.096  Sum_probs=110.8

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-----EeeeecCcCccCeEEcCC---CcEEE-EeCCCceEEEe-C
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-----NWKLIGGDTLLGITTTQE---NEILV-CDADKGLLKVT-E  144 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-----~~~~~~~~p~~gl~~d~~---g~l~v-~~~~~~i~~~~-~  144 (289)
                      ..+.++++.++|... +++.+|.|+.++ .++...     .+........ .+++.++   +.+++ +..+..|..++ .
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT-DVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE-EEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceE-EEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            446789999988654 777889999998 344322     2222233445 8899988   76555 44445677777 5


Q ss_pred             CC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-------
Q 022967          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-------  215 (289)
Q Consensus       145 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-------  215 (289)
                      ++  +..+....    ...+..+++. +|.++++...                 .+.|..+|..+++......       
T Consensus       229 ~~~~~~~~~~~h----~~~v~~~~~s-d~~~l~s~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          229 QCFIVDKWLFGH----KHFVSSICCG-KDYLLLSAGG-----------------DDKIFAWDWKTGKNLSTFDYNSLIKP  286 (450)
T ss_dssp             CTTCEEEECCCC----SSCEEEEEEC-STTEEEEEES-----------------SSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred             CCceeeeeecCC----CCceEEEEEC-CCCEEEEEeC-----------------CCeEEEEECCCCcEeeeecchhhhhh
Confidence            55  33322111    1246788999 8876665432                 4678888887665432211       


Q ss_pred             -------------------CCCCcceEEEecCCCEEEEEeCCCCeEEEEEe--cCC-CCcceeeeeccCCCCCCceeeCC
Q 022967          216 -------------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWL--KGE-SKEQTEIFVENLPGGPDNIKLAP  273 (289)
Q Consensus       216 -------------------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~--~~~-~~~~~~~~~~~~~~~p~~i~~d~  273 (289)
                                         .......++++++++.++++....+.|..|++  ... .+.....+.  ..+.+.+++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~~~v~~~~~~~  364 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FPYNVISLSAHN  364 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CSSCEEEEEEET
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cCCceEEEEecC
Confidence                               11234578999999999998767789999998  321 222222221  124566777777


Q ss_pred             CCCEEEEEe
Q 022967          274 DGSFWIAIL  282 (289)
Q Consensus       274 ~G~lwv~~~  282 (289)
                       +.+|++..
T Consensus       365 -~~~~v~~~  372 (450)
T 2vdu_B          365 -DEFQVTLD  372 (450)
T ss_dssp             -TEEEEEEC
T ss_pred             -CcEEEEEe
Confidence             45666654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.35  E-value=2.3e-05  Score=74.45  Aligned_cols=138  Identities=12%  Similarity=0.012  Sum_probs=86.5

Q ss_pred             CCcceEEEccCCC-EEEEec-CC-----eEEEEe-cCCceEEeeeecC-------------------------cCccCeE
Q 022967           77 NGPEDVCVDRNGV-LYTATR-DG-----WIKRLH-KNGTWENWKLIGG-------------------------DTLLGIT  123 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~~-~g-----~i~~~~-~~g~~~~~~~~~~-------------------------~p~~gl~  123 (289)
                      ..+.++++.+||+ |+++.. ++     .|+.++ .+|+.........                         ... .++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            4577889999997 455554 66     799999 4566544433211                         135 899


Q ss_pred             EcCCCcEEEEeCCCceEEEe-CCCe--EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCE
Q 022967          124 TTQENEILVCDADKGLLKVT-EEGV--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK  199 (289)
Q Consensus       124 ~d~~g~l~v~~~~~~i~~~~-~~g~--~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~  199 (289)
                      +.+||+..+......|+.++ .++.  +..  ..... ......++++|||+ |+++.                   .+.
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~--~l~~~-~~~~~~~~~SPDG~~la~~~-------------------~~~  173 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVR--QLTHG-EGFATDAKLSPKGGFVSFIR-------------------GRN  173 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCC--BCCCS-SSCEEEEEECTTSSEEEEEE-------------------TTE
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEE--EcccC-CcccccccCCCCCCEEEEEe-------------------CCc
Confidence            99999744433336688888 3331  110  00100 12456889999997 55442                   146


Q ss_pred             EEEEeCCCCeEEEeeCCCCC-----------------cceEEEecCCCEEEEEeC
Q 022967          200 LLKYDPSLNETSILLDSLFF-----------------ANGVALSKDEDYLVVCET  237 (289)
Q Consensus       200 i~~~~~~~~~~~~~~~~~~~-----------------p~gl~~~~d~~~l~v~~~  237 (289)
                      |+.+|.++++...+......                 +.+++|+|||++|+++..
T Consensus       174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            99999887776655332221                 477999999998888743

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.35  E-value=1.5e-05  Score=68.92  Aligned_cols=176  Identities=9%  Similarity=-0.020  Sum_probs=103.4

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCC-cEEEE-eCCCceEEEe-CCC--eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQEN-EILVC-DADKGLLKVT-EEG--VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g-~l~v~-~~~~~i~~~~-~~g--~~~~  150 (289)
                      -.++++.++|++. .+..++.|..++ .+++...... ...... .+++.+++ .++++ ..++.|..+| ..+  ...+
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE-EEEecCCCCCceeeeccccccccccccccceeeee
Confidence            4568899988866 666889999999 4565433222 233445 88898877 46655 3335577777 555  3332


Q ss_pred             EeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d  228 (289)
                      .....   ......+++.|+ ++++++..                 ..+.|..+|.++++.. .+.......+.++|+|+
T Consensus       209 ~~~~~---~~~~~~~~~~p~~~~~l~sg~-----------------~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          209 GCSAP---GYLPTSLAWHPQQSEVFVFGD-----------------ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             C-------CCCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEESCC--CCEEEECCSSCEEEEEECSS
T ss_pred             eccee---eccceeeeecCCCCcceEEec-----------------cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            21111   124567888885 46665532                 2467888888766533 33333444578999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEE
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWI  279 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  279 (289)
                      +..++++-...+.|..||.....+.   .+ ....+...++++..+|. +.+
T Consensus       269 g~~~lasgs~D~~i~vwd~~~~~~~---~~-~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          269 SVPFLASLSEDCSLAVLDSSLSELF---RS-QAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             SSCCEEEEETTSCEEEECTTCCEEE---EE-CCCSSCEEEEEECSSSTTEEE
T ss_pred             CCeEEEEEeCCCeEEEEECCCCcEE---EE-cCCCCCEEEEEEeCCCCeEEE
Confidence            8656666566688999987643221   11 12223445677766663 443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.34  E-value=0.00015  Score=63.55  Aligned_cols=180  Identities=11%  Similarity=0.005  Sum_probs=106.8

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeee-ec-----------------C-cCccCeEEcCCCcEEEEeCC-
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL-IG-----------------G-DTLLGITTTQENEILVCDAD-  136 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~-~~-----------------~-~p~~gl~~d~~g~l~v~~~~-  136 (289)
                      ...++++.++|++++...++.+..++ .+|+...... ..                 . ... .++|.++|+++++... 
T Consensus        66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcCC
Confidence            45678999999987555567788887 5565432211 00                 0 123 7889999986665433 


Q ss_pred             CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          137 KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       137 ~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                      ..|..++ .++ ........    ......+++.|+|...++...                 .+.|..+|..+++.....
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEccC----CCCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeEEEE
Confidence            4566677 555 32221111    124678999999976665432                 467888888877655444


Q ss_pred             CCCCCcceEEEec-CCCEEEEEeCCCCeEEEEEecCCCCcceeeee------ccCCCCCCceeeCCCCCEEEEEe
Q 022967          215 DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV------ENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       215 ~~~~~p~gl~~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ........++++| +++.+..+ ...+.|..||.......  ..+.      .........+++..+|.+.++..
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLV--ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCEE--EEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEE-cCCCcEEEEECCCCcEE--EeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            4344567788998 77755544 55688999987643221  1110      01112344577777776555443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.34  E-value=0.00017  Score=61.80  Aligned_cols=182  Identities=12%  Similarity=0.048  Sum_probs=108.1

Q ss_pred             cCCcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC---e
Q 022967           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG---V  147 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g---~  147 (289)
                      ...-.++++.++|++. .+..+|.|..++ .+++.. .+........ .+++.++|+++++... ..+..++ ..+   .
T Consensus        55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~  133 (340)
T 1got_B           55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTREGNV  133 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence            3456778999988866 667899999999 455433 2322233345 8899999986665433 3455555 322   2


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEe
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALS  226 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~  226 (289)
                      ..... ..+. ......+.+.+++.++.+..                  .+.|..+|..+++...... .......++++
T Consensus       134 ~~~~~-~~~h-~~~v~~~~~~~~~~l~s~s~------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          134 RVSRE-LAGH-TGYLSCCRFLDDNQIVTSSG------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             EEEEE-EECC-SSCEEEEEEEETTEEEEEET------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             eeEEE-ecCC-CccEEEEEECCCCcEEEEEC------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence            22211 1111 12345677777887655532                  3668888887776544333 23345788999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |+++.+ ++....+.|..||+.....  ...+. ........+++.++|+++++..
T Consensus       194 ~~~~~l-~sg~~d~~v~~wd~~~~~~--~~~~~-~h~~~v~~v~~~p~~~~l~s~s  245 (340)
T 1got_B          194 PDTRLF-VSGACDASAKLWDVREGMC--RQTFT-GHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             TTSSEE-EEEETTSCEEEEETTTCSE--EEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEE-EEEeCCCcEEEEECCCCee--EEEEc-CCcCCEEEEEEcCCCCEEEEEc
Confidence            999844 4445568899999764321  11221 2223455677888887655544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.34  E-value=6.5e-05  Score=65.92  Aligned_cols=176  Identities=11%  Similarity=0.088  Sum_probs=102.8

Q ss_pred             EEccCCCEE-EEecCCeEEEEec-CCceEEee-eecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEeccC
Q 022967           83 CVDRNGVLY-TATRDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHVN  155 (289)
Q Consensus        83 ~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~~~-~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~~~  155 (289)
                      ++.++|+++ ++..+|.|..++. .++..... ....... .+++.++++++++ .....+..++ .++  ...+...  
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  180 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--  180 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC--
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC--
Confidence            456677765 6678899999983 44443332 2223344 8999999875555 4334577777 555  4444211  


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-------------------
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------------  216 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-------------------  216 (289)
                         ......+++.|+|.+.++...                 .+.|..+|..+++.......                   
T Consensus       181 ---~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          181 ---RATVTDIAIIDRGRNVLSASL-----------------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             ---CCcEEEEEEcCCCCEEEEEcC-----------------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence               124678999999986665432                 35677777766654332221                   


Q ss_pred             ------CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-E-EEEEeCc
Q 022967          217 ------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-F-WIAILQV  284 (289)
Q Consensus       217 ------~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l-wv~~~~g  284 (289)
                            ......++|+|+++.|+.+. ..+.|..||+.....  ...+..........++..++|. + +.+..++
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENG  313 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             eeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence                  12234567789998766664 457899999764321  1122212223455677888776 4 4444444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.33  E-value=3.9e-05  Score=66.78  Aligned_cols=169  Identities=11%  Similarity=0.096  Sum_probs=95.2

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCcc--ccC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR--INL  161 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~--~~~  161 (289)
                      ++.+|+++.++.|+.++ .+|+................+ .++.+|+.....+++.+| .+| ....... ....  ...
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCCceeecC
Confidence            78999999899999999 568765332322222313344 367899987667799999 678 4332221 1111  111


Q ss_pred             ccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc-------------ceEEEecC
Q 022967          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------------NGVALSKD  228 (289)
Q Consensus       162 ~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p-------------~gl~~~~d  228 (289)
                      ....+++ +|.+|++..                  .+.|+.+|+++|+..-.... ..|             ....+  .
T Consensus       181 ~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~--~  238 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV--V  238 (376)
T ss_dssp             CCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE--E
T ss_pred             CCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE--E
Confidence            1223333 678888743                  36799999887765432111 011             11122  2


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ++.+|++. ..+.|+.+|..+.+.....    .. +....+.++ ++++|+++..+++
T Consensus       239 ~~~v~~~~-~~g~l~~~d~~tG~~~w~~----~~-~~~~~~~~~-~~~l~~~~~~g~l  289 (376)
T 3q7m_A          239 NGVVFALA-YNGNLTALDLRSGQIMWKR----EL-GSVNDFIVD-GNRIYLVDQNDRV  289 (376)
T ss_dssp             TTEEEEEC-TTSCEEEEETTTCCEEEEE----CC-CCEEEEEEE-TTEEEEEETTCCE
T ss_pred             CCEEEEEe-cCcEEEEEECCCCcEEeec----cC-CCCCCceEE-CCEEEEEcCCCeE
Confidence            45688874 4578999987543221111    11 123345555 5688888876554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.32  E-value=0.00018  Score=62.98  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEe
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~  152 (289)
                      ..++++.++|++. ++..++.|..++ .+++...... ...... .+++.++|..+++... ..+..+| .++ ......
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            3478899988766 667889999999 4454433222 223345 8999998876665433 4466667 566 322211


Q ss_pred             ccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--------CCCCCcceE
Q 022967          153 HVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--------DSLFFANGV  223 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--------~~~~~p~gl  223 (289)
                      . .    .....+++.| +|.++++...                 .+.|..+|..+++.....        ........+
T Consensus       205 ~-~----~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v  262 (393)
T 1erj_A          205 I-E----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  262 (393)
T ss_dssp             C-S----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             c-C----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence            1 1    2356788888 7876665432                 356777887766543222        112334678


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +|+|+++.|+.+ ...+.|..||+..
T Consensus       263 ~~~~~g~~l~s~-s~d~~v~~wd~~~  287 (393)
T 1erj_A          263 VFTRDGQSVVSG-SLDRSVKLWNLQN  287 (393)
T ss_dssp             EECTTSSEEEEE-ETTSEEEEEEC--
T ss_pred             EECCCCCEEEEE-eCCCEEEEEECCC
Confidence            999999966555 4568899998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.31  E-value=4.7e-05  Score=66.26  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=94.3

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeee--ecC-cCccCeEEcCCCcEEEEeC-CC--c--eEEEe-CCC-
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL--IGG-DTLLGITTTQENEILVCDA-DK--G--LLKVT-EEG-  146 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~--~~~-~p~~gl~~d~~g~l~v~~~-~~--~--i~~~~-~~g-  146 (289)
                      ...++++.|+|.+.+...++.+.+++ .+++......  ... ... .++|.++|..+++.. ..  +  ++.++ ..+ 
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence            35779999999988666667788887 5555332211  112 234 788999997666532 22  2  44455 333 


Q ss_pred             eEEEE-eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCC-CCCcceE
Q 022967          147 VTVLA-SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDS-LFFANGV  223 (289)
Q Consensus       147 ~~~~~-~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~-~~~p~gl  223 (289)
                      ..... ....+ .......+++.|||++.++...                 .+.|..+|.++++... +..+ ......+
T Consensus       257 ~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~-----------------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          257 TSVLRSKQVTN-RFKGITSMDVDMKGELAVLASN-----------------DNSIALVKLKDLSMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             EEEEEEEEEES-SCSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred             ecceeeeeecC-CCCCeEeEEECCCCCceEEEcC-----------------CCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence            22211 11111 1234678999999987665432                 3678888988776543 3333 3445789


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +|+||+++ +++-...+.|.+|++..
T Consensus       319 ~fSpdg~~-laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          319 TISPDSTY-VASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EECTTSCE-EEEEETTSEEEEEECCT
T ss_pred             EECCCCCE-EEEEeCCCeEEEEEcCC
Confidence            99999994 55556779999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.31  E-value=0.00046  Score=59.12  Aligned_cols=184  Identities=10%  Similarity=0.083  Sum_probs=103.6

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEeCCC-eEEEEe
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTEEG-VTVLAS  152 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~~~g-~~~~~~  152 (289)
                      .-.++++.+++.+. .+..++.|..++ .+++.. .+........ .+++.++|+.+++ .....+..++-.+ ......
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA  156 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEECC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeeee
Confidence            35678888888765 666889999999 456543 3333334455 8999999876554 4434566666323 211111


Q ss_pred             ccCCccccCccceEEcCCC----------cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967          153 HVNGSRINLADDLIAATDG----------SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG----------~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      ... ........+++.|++          .++++..                 ..+.|..+|........+.........
T Consensus       157 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          157 EKE-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTNFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             TTT-SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETTTEEEEEEECCSSCEEE
T ss_pred             ccc-CCCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCCCceeEEEcCccccceE
Confidence            100 111234567777765          3333322                 246777788543323333333445678


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ++|+|++++|..+ ...+.|..||+...... ...+.  .......+++.+++.+..+...+
T Consensus       219 ~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~-~~~~~--~~~~v~~v~~sp~~~~la~~~d~  276 (343)
T 2xzm_R          219 LSISPNGKYIATG-GKDKKLLIWDILNLTYP-QREFD--AGSTINQIAFNPKLQWVAVGTDQ  276 (343)
T ss_dssp             EEECTTSSEEEEE-ETTCEEEEEESSCCSSC-SEEEE--CSSCEEEEEECSSSCEEEEEESS
T ss_pred             EEECCCCCEEEEE-cCCCeEEEEECCCCccc-ceeec--CCCcEEEEEECCCCCEEEEECCC
Confidence            9999999966555 45688999998432211 11111  11234567777777665544443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.31  E-value=8.4e-06  Score=71.31  Aligned_cols=94  Identities=11%  Similarity=0.067  Sum_probs=63.1

Q ss_pred             eEEcCCC-cEEEeeC---CCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC-CC
Q 022967          165 LIAATDG-SIYFSVA---STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET-FK  239 (289)
Q Consensus       165 l~~~~dG-~lyv~~~---~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~-~~  239 (289)
                      +++++|| ++|++..   ....         ..   .+.+..+|.++++..........|.+|++++|++++|++.. ..
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~---------~~---~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCL---------AA---AENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTT---------SC---EEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEcCCCCEEEEEeccccCccc---------cc---CCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCC
Confidence            7899987 6998742   1000         00   13466899987765443333346999999999998999888 68


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                      +.|.++|....+..  . .+ .....|.+|++..+
T Consensus       337 ~~VsVID~~t~kvv--~-~I-~vg~~P~~i~~~~~  367 (368)
T 1mda_H          337 EVLDIYDAASDQDQ--S-SV-ELDKGPESLSVQNE  367 (368)
T ss_dssp             TEEEEEESSSCEEE--E-EC-CCCSCCCEEECCCC
T ss_pred             CeEEEEECCCCcEE--E-EE-ECCCCCCEEEeecC
Confidence            99999998754321  1 12 23467999988754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.30  E-value=3.6e-05  Score=67.82  Aligned_cols=181  Identities=13%  Similarity=0.134  Sum_probs=106.0

Q ss_pred             CcceEEEcc--CCCEEEEecCC----eEEEEecCC-ceEEeeeecC--------------cCccCeEEcC---CCcEEEE
Q 022967           78 GPEDVCVDR--NGVLYTATRDG----WIKRLHKNG-TWENWKLIGG--------------DTLLGITTTQ---ENEILVC  133 (289)
Q Consensus        78 ~p~~l~~d~--~g~l~v~~~~g----~i~~~~~~g-~~~~~~~~~~--------------~p~~gl~~d~---~g~l~v~  133 (289)
                      ...+|++|+  .+.||++...|    .|++.+..| .++.+.....              ... .|++++   .+.||++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            457799998  78999888766    788876444 3444332110              122 577874   5789998


Q ss_pred             eCCCceEEEeCCC--eEEEEecc--C------------CccccCccceEEcC--CCcEEEeeCCCccCccccccccceec
Q 022967          134 DADKGLLKVTEEG--VTVLASHV--N------------GSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAK  195 (289)
Q Consensus       134 ~~~~~i~~~~~~g--~~~~~~~~--~------------~~~~~~~~~l~~~~--dG~lyv~~~~~~~~~~~~~~~~~~~~  195 (289)
                      ....+|++.++.|  .+.+....  +            +........|++++  ++.||++...                
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~----------------  198 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS----------------  198 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC----------------
Confidence            7667899988655  55442210  1            01112345788987  3679998532                


Q ss_pred             CCCEEEEEeCCCCeEEEeeCCC-------------CCcceEEEecC-CCEEEEEeCCCCeEEEEEecCCCCcceeeeecc
Q 022967          196 PHGKLLKYDPSLNETSILLDSL-------------FFANGVALSKD-EDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN  261 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~~~~-------------~~p~gl~~~~d-~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  261 (289)
                        +.|++.+-.+...+.+..+.             .....|+++++ .+.||++..  ..|++.+-.+.+....   ...
T Consensus       199 --ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G~tW~~~---~~~  271 (394)
T 3b7f_A          199 --GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRREGVWKRI---GDA  271 (394)
T ss_dssp             --BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTTTEEECG---GGG
T ss_pred             --CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCCCcceEC---CCC
Confidence              56888865555566553321             12346778875 467898853  6788776444322211   111


Q ss_pred             CCC----CCCceeeC--CCCCEEEEEe
Q 022967          262 LPG----GPDNIKLA--PDGSFWIAIL  282 (289)
Q Consensus       262 ~~~----~p~~i~~d--~~G~lwv~~~  282 (289)
                      ++.    +...|++|  ..+.+|+++.
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEec
Confidence            221    12246777  5578999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.27  E-value=0.00011  Score=63.98  Aligned_cols=178  Identities=9%  Similarity=0.055  Sum_probs=108.1

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCc---------------CccCeEEcCCCcEEEEeCCCc
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGD---------------TLLGITTTQENEILVCDADKG  138 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~---------------p~~gl~~d~~g~l~v~~~~~~  138 (289)
                      ....++++.++++.. ++..++.|..++ .+++....... ...               .. .+.+.+++.++++.....
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  228 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGA  228 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGGC
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCCe
Confidence            446678998888754 677889999998 45543322211 111               45 888888877777765566


Q ss_pred             eEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-Eee
Q 022967          139 LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL  214 (289)
Q Consensus       139 i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~  214 (289)
                      +..++ ..+  ...+.. .    ......+++.++|.++++...                 .+.|..+|..+++.. .+.
T Consensus       229 i~~~d~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          229 IFVYQITEKTPTGKLIG-H----HGPISVLEFNDTNKLLLSASD-----------------DGTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             EEEEETTCSSCSEEECC-C----SSCEEEEEEETTTTEEEEEET-----------------TSCEEEECSSSBSCSEEEC
T ss_pred             EEEEEcCCCceeeeecc-C----CCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCccceEec
Confidence            88888 555  333321 1    124568899999976555332                 366888887655432 232


Q ss_pred             CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ........+++++++ .++.+ ...+.|..||+.....  ...+. ........+++..+|++.++..
T Consensus       287 ~~~~~i~~~~~~~~~-~l~~~-~~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          287 GHSQSIVSASWVGDD-KVISC-SMDGSVRLWSLKQNTL--LALSI-VDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             CCSSCEEEEEEETTT-EEEEE-ETTSEEEEEETTTTEE--EEEEE-CTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCCccEEEEEECCCC-EEEEE-eCCCcEEEEECCCCcE--eEecc-cCCccEEEEEEcCCCCEEEEEE
Confidence            233455788999988 45444 5568999999764321  11121 2223456678888886655443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.27  E-value=0.00054  Score=57.59  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=95.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~~~  149 (289)
                      ....++++.++|++. ++..++.|..++ .+++.. .+........ .+++.++++++++. ....+..+| .++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            345678999988766 666889999999 455533 2322233345 78899988766654 335577777 555  333


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeC-CCCCcceEEEec
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLD-SLFFANGVALSK  227 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~-~~~~p~gl~~~~  227 (289)
                      +...     ......+++.++|.++++...                 .+.|..+|..+++... +.. .......++++|
T Consensus       145 ~~~~-----~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          145 LPAH-----SDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             ECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             ecCC-----CCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            3211     123568899999986665432                 3678888887665432 222 222345689999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +++.|+.+. ..+.|..||+..
T Consensus       203 ~~~~l~~~~-~d~~i~iwd~~~  223 (312)
T 4ery_A          203 NGKYILAAT-LDNTLKLWDYSK  223 (312)
T ss_dssp             TSSEEEEEE-TTTEEEEEETTT
T ss_pred             CCCEEEEEc-CCCeEEEEECCC
Confidence            999776664 458899999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.25  E-value=0.00014  Score=63.85  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=95.7

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCce-EEeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~  149 (289)
                      ....++++.++|++. ++..++.|..++ .+++. ..+........ .+++.+++.++++ .....+..++ .++  ...
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT-DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence            456778999988755 667889999999 44543 33333334445 8999998875554 4434577777 555  333


Q ss_pred             EEeccC-Cc------------------cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE
Q 022967          150 LASHVN-GS------------------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (289)
Q Consensus       150 ~~~~~~-~~------------------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  210 (289)
                      +..... ..                  .......++++++|.+.++..                 ..+.|..+|..+++.
T Consensus       219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------------~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-----------------VSGVITVHNVFSKEQ  281 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-----------------TTSCEEEEETTTCCE
T ss_pred             eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-----------------CCCeEEEEECCCCce
Confidence            321100 00                  012344667788886555432                 246788888876654


Q ss_pred             EEe-eC-CCCCcceEEEecCCC-EEEEEeCCCCeEEEEEecCC
Q 022967          211 SIL-LD-SLFFANGVALSKDED-YLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       211 ~~~-~~-~~~~p~gl~~~~d~~-~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ... .. .......++|+|+++ .|+.+ ...+.|..||+...
T Consensus       282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          282 TIQLPSKFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRSP  323 (420)
T ss_dssp             EEEECCTTSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTCT
T ss_pred             eEEcccccCCCceeEEEeCCCCCEEEEE-eCCCeEEEEEcCCC
Confidence            332 22 233467899999998 55555 45689999998753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.22  E-value=0.00076  Score=57.21  Aligned_cols=180  Identities=10%  Similarity=0.088  Sum_probs=105.9

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g--~~~~~  151 (289)
                      .-.++++.++|++. .+..++.|..++ .+|+.. .+........ .+++++++.++++... ..+..++-.+  ...+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            34567888888765 666889999999 556533 3333334445 8999998886665433 4466666333  43332


Q ss_pred             eccCCccccCccceEEcCC------CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEE
Q 022967          152 SHVNGSRINLADDLIAATD------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~d------G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~  224 (289)
                      ..     ......+.+.|+      +.+.++..                 ..+.|..+|..+.+..... ......+.++
T Consensus       146 ~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~  203 (319)
T 3frx_A          146 GH-----NDWVSQVRVVPNEKADDDSVTIISAG-----------------NDKMVKAWNLNQFQIEADFIGHNSNINTLT  203 (319)
T ss_dssp             CC-----SSCEEEEEECCC------CCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCCSCEEEEE
T ss_pred             cc-----CCcEEEEEEccCCCCCCCccEEEEEe-----------------CCCEEEEEECCcchhheeecCCCCcEEEEE
Confidence            11     113445566553      33444432                 2466777887766554333 3334557899


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ++|+++.|..+ ...+.|..||+.....  ...+.  .......+++.++|.+.++....+
T Consensus       204 ~sp~g~~l~s~-~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          204 ASPDGTLIASA-GKDGEIMLWNLAAKKA--MYTLS--AQDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             ECTTSSEEEEE-ETTCEEEEEETTTTEE--EEEEE--CCSCEEEEEECSSSSEEEEEETTE
T ss_pred             EcCCCCEEEEE-eCCCeEEEEECCCCcE--EEEec--CCCcEEEEEEcCCCCEEEEEcCCC
Confidence            99999955555 4568899999765322  11111  122345677777777665554443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.21  E-value=2e-05  Score=72.92  Aligned_cols=169  Identities=14%  Similarity=0.125  Sum_probs=99.4

Q ss_pred             cceEEEccCC--CEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEE-eCC----CceEEEe-CCC-eE
Q 022967           79 PEDVCVDRNG--VLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DAD----KGLLKVT-EEG-VT  148 (289)
Q Consensus        79 p~~l~~d~~g--~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~-~~~----~~i~~~~-~~g-~~  148 (289)
                      ....++.++|  .+|++...+.+..++ .+|+...+.....  . .+++++||+.++. ...    ..|+.+| .+| .+
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3344555555  356666556666777 4566555544333  5 8899999986653 222    3488888 667 66


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEE----
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA----  224 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~----  224 (289)
                      .+... .    .....+++.|||+..++...               .....|+++|.++++...+.........++    
T Consensus       189 ~l~~~-~----~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          189 VFDSG-E----GSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EECCS-S----CEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred             EeecC-C----CccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence            55321 1    13468899999974443211               112379999999888773322222334456    


Q ss_pred             ----EecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          225 ----LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       225 ----~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                          |+|||. +|++....+.+..|++ |...    .   .+.+....+++. +|.+++.
T Consensus       249 ~~~~~spdg~-~~~~~~~~g~~~l~~~-g~~~----~---~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          249 TWLGYLPDGR-LAVVARREGRSAVFID-GERV----E---APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             EEEEECTTSC-EEEEEEETTEEEEEET-TEEE----C---CCSSEEEEEEEE-TTEEEEE
T ss_pred             cceeEcCCCc-EEEEEEcCCcEEEEEE-CCee----c---cCCCceEEEEec-CCEEEEE
Confidence                999994 7776666677888876 3211    1   111233456666 6765544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.21  E-value=0.00054  Score=58.16  Aligned_cols=179  Identities=13%  Similarity=0.096  Sum_probs=103.8

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCCce-EEeeeecCcCccCeEEcC------CCcEEE-EeCCCceEEEe-CCC-
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQ------ENEILV-CDADKGLLKVT-EEG-  146 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~------~g~l~v-~~~~~~i~~~~-~~g-  146 (289)
                      ...++++.+++.+. .+..++.|..++.+++. ..+........ .+.+.+      ++.+++ +.....+..++ .++ 
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            45678888888765 66788999999965543 22222222233 566654      333444 44434566666 444 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      ........    ......+++.|+|.+.++...                 .+.|..+|..+++.............++|+
T Consensus       188 ~~~~~~~h----~~~v~~~~~sp~g~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  246 (319)
T 3frx_A          188 IEADFIGH----NSNINTLTASPDGTLIASAGK-----------------DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS  246 (319)
T ss_dssp             EEEEECCC----CSCEEEEEECTTSSEEEEEET-----------------TCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred             hheeecCC----CCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence            22211111    124678999999987776432                 467888888776654433344456789999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-------CCCCCCceeeCCCCCEEEEEe
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-------LPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      |++..+..+..  ..+..|+++.....  ..+...       .......++..++|.+.++..
T Consensus       247 p~~~~la~~~~--~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          247 PNRYWLAAATA--TGIKVFSLDPQYLV--DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             SSSSEEEEEET--TEEEEEEETTEEEE--EEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEcC--CCcEEEEeCcCeee--eccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence            99997776643  56777877643211  111000       112234578888887665544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.21  E-value=0.00013  Score=63.29  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=96.2

Q ss_pred             EEEccCCC-EEEEec-CC--eEEEEec-CCceEEeeeecCc-CccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           82 VCVDRNGV-LYTATR-DG--WIKRLHK-NGTWENWKLIGGD-TLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        82 l~~d~~g~-l~v~~~-~g--~i~~~~~-~g~~~~~~~~~~~-p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      .++.|||+ |++... ++  .|+.++. .|+...+...... .. +.++.+||+ |+++.....++.++ .+| .+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            46778887 444443 45  5888984 5555544433332 34 678999996 66666556799999 666 444433


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCC--ccC-cccc--ccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVAST--KFG-LHNW--GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~--~~~-~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~  227 (289)
                      ...+  ........+++||.+.+.....  .+. ...+  ............|+.+|.++++...+.........++|+|
T Consensus       120 ~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          120 VPAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             CCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             chhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            2111  1111123457888766542100  000 0000  0011122334689999999888777765555567889999


Q ss_pred             -CCCEEEEEeCC-----CCeEEEEEecCC
Q 022967          228 -DEDYLVVCETF-----KFRCLKYWLKGE  250 (289)
Q Consensus       228 -d~~~l~v~~~~-----~~~i~~~~~~~~  250 (289)
                       |++.|.++...     ..+|+.++.++.
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence             99877665543     358999987764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.20  E-value=0.00033  Score=66.15  Aligned_cols=184  Identities=14%  Similarity=0.099  Sum_probs=109.1

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEeCCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~~~g--~~~~~  151 (289)
                      ...++++.++|++. ++..++.|..++ .+++.. .+........ .+++.++++.+++ ..+..|..++..+  ...+.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            35678899988866 666889999999 455433 3333334455 8999998875555 4434566666333  22222


Q ss_pred             eccCCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecC
Q 022967          152 SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d  228 (289)
                      ....+ .......+++.+++  .+.++..                 ..+.|..+|..+++......+ ......++++|+
T Consensus       511 ~~~~~-h~~~v~~~~~~~~~~~~~l~s~s-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          511 EGGEG-HRDWVSCVRFSPNTLQPTIVSAS-----------------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             SSTTS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCC-CCCcEEEEEEeCCCCcceEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            11111 11245688898886  3444432                 236677788776665444333 344578999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ++.|..+ ...+.|..||+.....    ............+++.+++.+.++...++
T Consensus       573 g~~l~sg-~~Dg~i~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          573 GSLCASG-GKDGVVLLWDLAEGKK----LYSLEANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             SSEEEEE-ETTSBCEEEETTTTEE----EECCBCSSCEEEEEECSSSSEEEEEETTE
T ss_pred             CCEEEEE-eCCCeEEEEECCCCce----EEEecCCCcEEEEEEcCCCcEEEEEcCCC
Confidence            9955544 5568899998764321    11101123345677777777766665544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.20  E-value=2e-05  Score=68.25  Aligned_cols=187  Identities=8%  Similarity=-0.095  Sum_probs=99.0

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCc----eEEeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC-e-
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT----WENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-V-  147 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~----~~~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g-~-  147 (289)
                      ...++++.++|++. ++..++.|..++ .+++    ...+........ .+++.+++++++ +.....+..++ ..+ . 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            35678899887654 667889999998 3443    222222233344 888988886444 44434466666 333 1 


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC------------------Ce
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL------------------NE  209 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~------------------~~  209 (289)
                      ... ....+........+++.|+|.+.++...                 .+.|..+|...                  ++
T Consensus       136 ~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          136 WVS-KHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             CCC-EEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             eee-eEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhh
Confidence            111 1111111235678999999976665332                 24455555421                  11


Q ss_pred             EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          210 TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ--TEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       210 ~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .............++|+|+++.|+.+ ...+.|..||+.......  ...+. ........++...+|.+.++...++
T Consensus       198 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          198 VCAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             EEECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             hhhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCc
Confidence            11111223345678999999966666 455889999987543210  11111 1122345677777777666655443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.20  E-value=3.5e-05  Score=66.95  Aligned_cols=137  Identities=15%  Similarity=0.119  Sum_probs=81.5

Q ss_pred             CeEEEEe-cCCceEEeeeecCcCccCeEEcC-CCc-EEEEeC------CCceEEEeC-CC-eEEEEeccCCccccCccce
Q 022967           97 GWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-ENE-ILVCDA------DKGLLKVTE-EG-VTVLASHVNGSRINLADDL  165 (289)
Q Consensus        97 g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~-~g~-l~v~~~------~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l  165 (289)
                      ..|+.++ .+|+...+........ .+++.+ ||+ |.++..      ...|+.++. .+ .+.+.....+   ......
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~---~~~~~~  243 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQWLG-HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG---ESCTHE  243 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT---EEEEEE
T ss_pred             ceEEEEECCCCceEEeecCCcccc-ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC---cccccc
Confidence            5788888 5677666655444455 788988 886 433332      136888884 44 5444321110   123467


Q ss_pred             EEcCCCc-EEE-eeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC------CCcceEEEecCCCEEEEEe-
Q 022967          166 IAATDGS-IYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL------FFANGVALSKDEDYLVVCE-  236 (289)
Q Consensus       166 ~~~~dG~-lyv-~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~------~~p~gl~~~~d~~~l~v~~-  236 (289)
                      ++.|||+ |++ +...              ......|+.+|.++++.+.+....      ..+.+++|+|||+.|+++. 
T Consensus       244 ~~spdg~~l~~~~~~~--------------~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  309 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLK--------------GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ  309 (388)
T ss_dssp             EECTTSSCEEEEEEET--------------TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred             eECCCCCEEEEEecCC--------------CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence            8999996 644 3321              011135999999888765542211      1256778999999888753 


Q ss_pred             -------CCCCeEEEEEecCCC
Q 022967          237 -------TFKFRCLKYWLKGES  251 (289)
Q Consensus       237 -------~~~~~i~~~~~~~~~  251 (289)
                             .+...|+++++++..
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          310 DDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             -------CCCCEEEEEETTTTE
T ss_pred             eccccccCCCCEEEEEeccCCc
Confidence                   456789999987643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.18  E-value=0.00027  Score=59.52  Aligned_cols=150  Identities=9%  Similarity=0.041  Sum_probs=93.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      ..-.++++.|+|.+. ++..+|.|..++ .++...........+...+++.++++++++... ..|..++ .++  +..+
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~   93 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF   93 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence            456789999988866 666889999999 445433222222333337888888876665433 4566677 556  3333


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeC-CCCCcceEEEec-
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD-SLFFANGVALSK-  227 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~-~~~~p~gl~~~~-  227 (289)
                      ... .    .....+++.|++.+.++...                 .+.|..+|.+++ ....... .......++|+| 
T Consensus        94 ~~h-~----~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           94 EAH-P----DYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             ECC-S----SCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             eCC-C----CcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence            211 1    24678999999987666432                 356777776544 3333323 334457889999 


Q ss_pred             CCCEEEEEeCCCCeEEEEEecC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ++. ++++....+.|..||+..
T Consensus       152 ~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          152 DPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             CTT-EEEEEETTSEEEEEETTC
T ss_pred             CCC-EEEEEeCCCeEEEEECCC
Confidence            455 555555668899999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.17  E-value=0.00011  Score=64.18  Aligned_cols=184  Identities=12%  Similarity=0.072  Sum_probs=104.0

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCC----c--eEEeeeecCcCccCeEEcCC-CcEEEEeCC-CceEEEe-CCCe
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG----T--WENWKLIGGDTLLGITTTQE-NEILVCDAD-KGLLKVT-EEGV  147 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g----~--~~~~~~~~~~p~~gl~~d~~-g~l~v~~~~-~~i~~~~-~~g~  147 (289)
                      ...++++.++|.+. ++..+|.|..++.+.    .  ...+........ .+++.++ ++++++... ..|..++ ..+.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            45678898887755 667889999998322    2  222222233445 8999987 665555433 4466666 3321


Q ss_pred             ------EEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC----
Q 022967          148 ------TVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----  216 (289)
Q Consensus       148 ------~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~----  216 (289)
                            ..+..............+++.++ +.++++...                 .+.|..+|.++++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEeccccc
Confidence                  22111000111235678999998 566666432                 46788888877665443332    


Q ss_pred             ---CCCcceEEEecCCCEEEEEeCCCC---eEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEE
Q 022967          217 ---LFFANGVALSKDEDYLVVCETFKF---RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIA  280 (289)
Q Consensus       217 ---~~~p~gl~~~~d~~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~  280 (289)
                         ......++|+|++..++++....+   .|..||+...... ...+..........++... +|.+.++
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEE
Confidence               345678999999854555545555   8999998653111 1111101123345577765 5654443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.17  E-value=9.8e-05  Score=63.97  Aligned_cols=178  Identities=8%  Similarity=-0.011  Sum_probs=101.2

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCc-EEEE-eCCCceEEEe-CCC--eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENE-ILVC-DADKGLLKVT-EEG--VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~-l~v~-~~~~~i~~~~-~~g--~~~~  150 (289)
                      ..++++.++|+.. ++..++.|..++ .+++...... ...... .+++.+++. ++++ .....|..+| ..+  ...+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            4668899988766 667889999999 4554433222 233344 788877663 4444 4334466666 444  2221


Q ss_pred             EeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d  228 (289)
                      ...   .....+..+++.|++ .++++..                 ..+.|..+|..+++......+ ......++|+|+
T Consensus       221 ~~~---~~~~~v~~v~~sp~~~~~la~g~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          221 DFC---ASDTIPTSVTWHPEKDDTFACGD-----------------ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             CCT---TCCSCEEEEEECTTSTTEEEEEE-----------------SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred             eec---cccccccchhhhhcccceEEEee-----------------cccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence            111   111245688899875 5554422                 235688888766554333333 334578999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEEEEE
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAI  281 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~  281 (289)
                      ++.++++-...+.|..||++.....   ... ...+....+++.+ +|.++++.
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~---~~~-~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVF---RDL-SHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEE---EEC-CCSSCEEEEEECSSSTTEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEe---EEC-CCCCCEEEEEEeCCCCCEEEEE
Confidence            8656665556688999987643221   111 1223345566663 56555443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.17  E-value=0.00042  Score=61.13  Aligned_cols=177  Identities=11%  Similarity=0.112  Sum_probs=104.5

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEec-CCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      ...++++.++|.+. ++..++.|..|+. +++... +........ .+++.++|+.+++... ..+..++ .++  +..+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            34568888888766 6668888989984 344322 222223344 8999998876665433 4466677 566  4444


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecC-
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD-  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d-  228 (289)
                      ...     ......+.+.++|.++++...                 .+.|..+|..+++..... ........++|+|+ 
T Consensus       231 ~~h-----~~~v~~~~~~~~g~~l~s~s~-----------------D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          231 TGH-----REWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPES  288 (410)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             eCC-----CccEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence            221     124567889999987776432                 356777777666544332 22333466778775 


Q ss_pred             -------------------CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          229 -------------------EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       229 -------------------~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                                         +. ++++....+.|..||+.....  ...+. ...+...++++..+|.+.++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~--~~~~~-~h~~~v~~v~~~~~g~~l~s~  356 (410)
T 1vyh_C          289 SYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC--LMTLV-GHDNWVRGVLFHSGGKFILSC  356 (410)
T ss_dssp             GGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEECSSSSCEEEE
T ss_pred             cccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce--EEEEE-CCCCcEEEEEEcCCCCEEEEE
Confidence                               44 444445668899999764321  11222 222345567788777654443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.17  E-value=4.6e-05  Score=68.64  Aligned_cols=164  Identities=13%  Similarity=0.131  Sum_probs=93.8

Q ss_pred             eEEeeeecCcCccCeEEcCCCc--EEEEeCCCceEEEeCCC-e--EEEEec---cC-C---ccccCccceEEcCC----C
Q 022967          108 WENWKLIGGDTLLGITTTQENE--ILVCDADKGLLKVTEEG-V--TVLASH---VN-G---SRINLADDLIAATD----G  171 (289)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~--l~v~~~~~~i~~~~~~g-~--~~~~~~---~~-~---~~~~~~~~l~~~~d----G  171 (289)
                      ++.++.....|. +|++.++|.  |||++....|++++.+| .  +.+...   .. +   .....+.+|+++|+    |
T Consensus         6 v~~va~gL~~P~-~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~   84 (463)
T 2wg3_C            6 IQEVVSGLRQPV-GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEEEESSEE-EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred             EEEeccCCCCce-EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence            456666778899 999999985  99999766688887544 2  222211   11 1   11245678999986    8


Q ss_pred             cEEEeeCCCccCccccccccceecCCCEEEEEeCCCC--------eEEEee-----CCCCCcceEEEecCCCEEEEEeCC
Q 022967          172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--------ETSILL-----DSLFFANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       172 ~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--------~~~~~~-----~~~~~p~gl~~~~d~~~l~v~~~~  238 (289)
                      .|||+.....-+...   .  ......+|.|+....+        +.+++.     ....+...|+|+|||+ |||+--.
T Consensus        85 ~lYv~yt~~~~~~~~---~--~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           85 KLYVSYTTNQERWAI---G--PHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             EEEEEEEECCCSSCS---S--SSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             EEEEEEeCCCCCccc---C--CcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence            899975320000000   0  0000135666654311        112221     2234456799999997 9998431


Q ss_pred             -----------------CCeEEEEEecCC------CCc-----------ceeeeeccCCCCCCceeeCCC-----CCEEE
Q 022967          239 -----------------KFRCLKYWLKGE------SKE-----------QTEIFVENLPGGPDNIKLAPD-----GSFWI  279 (289)
Q Consensus       239 -----------------~~~i~~~~~~~~------~~~-----------~~~~~~~~~~~~p~~i~~d~~-----G~lwv  279 (289)
                                       ..+|.|++.++.      ++-           ..+++...+ -.|-++++|++     |.||+
T Consensus       159 ~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~  237 (463)
T 2wg3_C          159 GMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTI  237 (463)
T ss_dssp             TTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEE
T ss_pred             CCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEE
Confidence                             356999999873      110           123343333 24889999987     65544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.17  E-value=0.00023  Score=61.78  Aligned_cols=154  Identities=14%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeee-------cCcCccCeEEcCCCcEEEEeCC----CceEEEe-
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI-------GGDTLLGITTTQENEILVCDAD----KGLLKVT-  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~-------~~~p~~gl~~d~~g~l~v~~~~----~~i~~~~-  143 (289)
                      ....++++.++|.++++..++.|..++ .+++.......       ..... .++++++++++++...    ..|..++ 
T Consensus       187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~-~i~~~~~~~~l~~~~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYET  265 (397)
T ss_dssp             CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc-eEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            456789999988333667889999999 44543332222       33345 8999998886665433    3466777 


Q ss_pred             CCC--eEEEEeccC-Cc-------cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          144 EEG--VTVLASHVN-GS-------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       144 ~~g--~~~~~~~~~-~~-------~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      .++  +..+..... ..       .......+++.|+|.++++...                 .+.|..+|..+++....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITT  328 (397)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEE
T ss_pred             CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEEcCCCceeEE
Confidence            555  333321000 00       1134678999999986665432                 46788888876664433


Q ss_pred             eC------C----------------CCCcceEEEecCC----------CEEEEEeCCCCeEEEEEecC
Q 022967          214 LD------S----------------LFFANGVALSKDE----------DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       214 ~~------~----------------~~~p~gl~~~~d~----------~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ..      .                ......++|++++          +. +++....+.|..|++++
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES-LCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE-EEEEETTTEEEEEEEEC
T ss_pred             EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce-EEEecCCCcEEEEEcCC
Confidence            33      2                3446789999998          54 44445568899998864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.16  E-value=0.00045  Score=60.92  Aligned_cols=150  Identities=11%  Similarity=0.091  Sum_probs=96.4

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~  149 (289)
                      ....++++.|++.+. .+..++.|..|+ .+|+... +........ .++++++|+++++... ..|..++ .++  +..
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            345678999988766 666889999999 5565433 322233445 8999999886665433 4466666 444  222


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~gl~~~~d  228 (289)
                      +    .+. ......+++.|+|...++...                 .+.|..+|..++... .+.........+.++++
T Consensus       188 ~----~~h-~~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          188 M----HGH-DHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             C----CCC-SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             E----cCC-CCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence            2    111 124678999999987666432                 467888888766543 33333344567889999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCC
Q 022967          229 EDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++.+..+ ...+.|..||+...
T Consensus       246 g~~l~s~-s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          246 GTLIASC-SNDQTVRVWVVATK  266 (410)
T ss_dssp             SSEEEEE-ETTSCEEEEETTTC
T ss_pred             CCEEEEE-cCCCeEEEEECCCC
Confidence            9955544 55688999987643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.15  E-value=0.00026  Score=60.24  Aligned_cols=179  Identities=8%  Similarity=-0.027  Sum_probs=100.6

Q ss_pred             CcceEEEccC---CC-EEEEecCCeEEEEe-cCCc--eEEeeeecCcCccCe------EEcCCCcEEEE-eCCCceEEEe
Q 022967           78 GPEDVCVDRN---GV-LYTATRDGWIKRLH-KNGT--WENWKLIGGDTLLGI------TTTQENEILVC-DADKGLLKVT  143 (289)
Q Consensus        78 ~p~~l~~d~~---g~-l~v~~~~g~i~~~~-~~g~--~~~~~~~~~~p~~gl------~~d~~g~l~v~-~~~~~i~~~~  143 (289)
                      ...++++.++   |. |+++..+|.|..++ .+++  ...+........ .+      ++.++++++++ .....+..++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            4566788886   44 55777889999998 3343  333332222233 55      45677765554 4434577777


Q ss_pred             -CCC---eEEEEeccCCccccCccceE----EcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC
Q 022967          144 -EEG---VTVLASHVNGSRINLADDLI----AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (289)
Q Consensus       144 -~~g---~~~~~~~~~~~~~~~~~~l~----~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  215 (289)
                       ..+   ...+.. ..+........++    +.+++.+.++...                 .+.|..+|.++++......
T Consensus       146 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------NGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------TSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------CCeEEEEECccCceeeecC
Confidence             433   333321 1211112344555    5678876665432                 4788899988777654444


Q ss_pred             CCCCcceEEEec---CCCEEEEEeCCCCeEEEEEecCCCCcc-eeee-eccCCCCCCceeeCCCCC
Q 022967          216 SLFFANGVALSK---DEDYLVVCETFKFRCLKYWLKGESKEQ-TEIF-VENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       216 ~~~~p~gl~~~~---d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~p~~i~~d~~G~  276 (289)
                      .......++++|   +++.++++ ...+.|..||+....... .... ..........++..++|.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence            445567899999   88877766 455889999986432211 1100 011223345566777665

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.15  E-value=0.00019  Score=66.82  Aligned_cols=183  Identities=9%  Similarity=0.032  Sum_probs=104.8

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCc-eEEEe-CCC--e-EE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--V-TV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~-i~~~~-~~g--~-~~  149 (289)
                      ..+..++++|+|+..+...++.|..++ .+++.. .+........ .++|.++|++.++....+ +..+| .++  . ..
T Consensus        19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            457889999999876544467888888 345433 3333333344 899999998776644444 55556 333  2 21


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      ......    ....+++++|||...++.+..             ....+.|+.+|.. .....+.......+.++|+|++
T Consensus        98 ~~~~~~----~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~  159 (611)
T 1nr0_A           98 TIPVFS----GPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSR  159 (611)
T ss_dssp             EEECSS----SCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSS
T ss_pred             eecccC----CceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCC
Confidence            111111    246789999999866654320             0012456666632 2222222233445788999998


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ...+++....+.|..|+....+  ....+ .........+++.++|.+.++.
T Consensus       160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l-~~H~~~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          160 PFRIISGSDDNTVAIFEGPPFK--FKSTF-GEHTKFVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             SCEEEEEETTSCEEEEETTTBE--EEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CeEEEEEeCCCeEEEEECCCCe--Eeeee-ccccCceEEEEECCCCCEEEEE
Confidence            7656666667888888854321  11122 1222334567777777665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00087  Score=57.37  Aligned_cols=184  Identities=16%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecC-CceEE---eeeecCcCccCeEEcCC--CcEEEE-eCCCceEEEe-CCC-
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWEN---WKLIGGDTLLGITTTQE--NEILVC-DADKGLLKVT-EEG-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~-g~~~~---~~~~~~~p~~gl~~d~~--g~l~v~-~~~~~i~~~~-~~g-  146 (289)
                      ..-.++++.++|.+. ++..+|.|..++.+ +....   +........ .+++.++  ++++++ ..+..|..++ .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            345678899988765 66688989999832 22221   222223334 7888755  665554 4434566667 555 


Q ss_pred             eEEEEeccCCccccCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe---EEEeeCCCCCcc
Q 022967          147 VTVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFAN  221 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~~~~~p~  221 (289)
                      ...+... .. .......+++.|+  |.+.++...                 .+.|..+|..++.   ...+........
T Consensus        91 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           91 WSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             eeEeeee-cC-CCcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEecCCCCceeeEEecCCCCceE
Confidence            3332221 11 1134678899998  776555432                 3677777776542   222333344557


Q ss_pred             eEEEec-------------CCCEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCceeeCCC---CCEEEEE
Q 022967          222 GVALSK-------------DEDYLVVCETFKFRCLKYWLKGESKE-QTEIFVENLPGGPDNIKLAPD---GSFWIAI  281 (289)
Q Consensus       222 gl~~~~-------------d~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~---G~lwv~~  281 (289)
                      .++++|             +++.++.+ ...+.|..||+...... ...............++..++   |.+.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEE-eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            788998             57755555 45578999998754321 111111122233455777776   5544444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.14  E-value=0.00087  Score=58.64  Aligned_cols=176  Identities=8%  Similarity=0.002  Sum_probs=106.7

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-C-CC--eEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~-~g--~~~~  150 (289)
                      ...++++.++|.+. ++..+|.|..++ .+++.. .+........ .+.++. ..++.+.....+..++ . .+  ...+
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEEET-TEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEECC-CEEEEEcCCCCEEEEecccCcceeeEE
Confidence            35678888888755 677889999998 445433 3322233344 788843 2444455445566777 4 23  3333


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~  229 (289)
                      .. ..    ....++++.++|.++++...                 .+.|..+|..+++..... ........++|+|++
T Consensus       214 ~~-~~----~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          214 QG-HS----SEVCGLAWRSDGLQLASGGN-----------------DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             EC-CS----SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred             cC-CC----CCeeEEEEcCCCCEEEEEeC-----------------CCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence            21 11    24678999999986665432                 367888888766544333 334456789999988


Q ss_pred             CEEEEEeC--CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          230 DYLVVCET--FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       230 ~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      +.++++..  ..+.|..||+.....  ...+  ........++...+|.+.+++
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAATGAR--VNTV--DAGSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETTTCCE--EEEE--ECSSCEEEEEECSSSSEEEEE
T ss_pred             CCEEEEecCCCCCEEEEEECCCCCE--EEEE--eCCCcEEEEEECCCCCeEEEE
Confidence            87888754  578899999764322  1111  112335567777777655553

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.14  E-value=0.0014  Score=56.45  Aligned_cols=177  Identities=15%  Similarity=0.191  Sum_probs=105.7

Q ss_pred             cceEEEccCCC-EEEEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcC--CCcEEE-EeCCCceEEEe-CCC--eEE
Q 022967           79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQ--ENEILV-CDADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        79 p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~--~g~l~v-~~~~~~i~~~~-~~g--~~~  149 (289)
                      ..++++.+++. |+++..++.|..++ .+++.. .+........ .+.+.+  +|++++ +..+..+..+| .++  ...
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            34677888765 55777899999999 556543 3322223333 566654  555555 44445677788 566  333


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC---CCCcceEEEe
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANGVALS  226 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~---~~~p~gl~~~  226 (289)
                      +.. .    ....+.+++.|+|.++++...                 .+.|..+|...++.......   ......++|+
T Consensus       236 ~~~-h----~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          236 FET-H----ESDVNSVRYYPSGDAFASGSD-----------------DATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             ECC-C----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             ecC-C----CCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            321 1    124678999999987766432                 35677778765543322221   2234678999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++++.|+.+. ..+.|..||+.....  ...+. ...+....+++.++|.+.++..
T Consensus       294 ~~g~~l~~g~-~d~~i~vwd~~~~~~--~~~l~-~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          294 LSGRLLFAGY-NDYTINVWDVLKGSR--VSILF-GHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             TTSSEEEEEE-TTSCEEEEETTTCSE--EEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCCEEEEEE-CCCcEEEEECCCCce--EEEEE-CCCCcEEEEEECCCCCEEEEEc
Confidence            9999666664 558899999753221  11221 2223456688888886555543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.13  E-value=0.0007  Score=58.96  Aligned_cols=152  Identities=13%  Similarity=0.178  Sum_probs=96.0

Q ss_pred             ceEEEcc-CCCEE-EEecCCeEEEEec--CCc-eEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           80 EDVCVDR-NGVLY-TATRDGWIKRLHK--NGT-WENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        80 ~~l~~d~-~g~l~-v~~~~g~i~~~~~--~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      .++.+.+ +++++ .+..++.|..||.  .+. ...+....+... .+++.++|..+++... ..+..+| ..+  +..+
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            4466655 66666 6668899999983  222 333333334455 8999999987776544 4466677 566  3333


Q ss_pred             EeccC--CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-----CCCCCcceE
Q 022967          151 ASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----DSLFFANGV  223 (289)
Q Consensus       151 ~~~~~--~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-----~~~~~p~gl  223 (289)
                      .....  .........+++.++|.+.++...                 .+.|+.+|...++.....     ........+
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEEC-----------------CCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            22111  111224678999999987776433                 467888887766543322     123345778


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +|+||++.| ++-...+.|..|++.+.
T Consensus       351 ~~s~dg~~l-~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          351 GLSSDGSAL-CTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECSSSSEE-EEECTTSCEEEEECCSS
T ss_pred             EECCCCCEE-EEeeCCCCEEEEecCCC
Confidence            999999955 45466788999987653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.13  E-value=3e-05  Score=73.39  Aligned_cols=137  Identities=7%  Similarity=-0.066  Sum_probs=85.2

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC----cCccCeEEcCCCcEEE-EeCC---------CceEEE
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG----DTLLGITTTQENEILV-CDAD---------KGLLKV  142 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~----~p~~gl~~d~~g~l~v-~~~~---------~~i~~~  142 (289)
                      .+.++++.++|++++...+|.|+.++ .+|+.........    ... .+++.+||+..+ +...         ..++.+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            36677888888866556778899998 4565544433222    245 899999998444 4321         346677


Q ss_pred             e-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CC
Q 022967          143 T-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LF  218 (289)
Q Consensus       143 ~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~  218 (289)
                      + .+| .+.+... .+ ....+..++++|||+ |.++.                   .+.|+.++.++++...+... ..
T Consensus        97 d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           97 KIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             ESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBT
T ss_pred             ECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCC
Confidence            7 556 5433221 11 111256789999995 55543                   14688888877765544332 11


Q ss_pred             ------------------CcceEEEecCCCEEEEEe
Q 022967          219 ------------------FANGVALSKDEDYLVVCE  236 (289)
Q Consensus       219 ------------------~p~gl~~~~d~~~l~v~~  236 (289)
                                        ...+++|+|||+.|+++.
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                              225799999999887764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.12  E-value=0.00077  Score=59.74  Aligned_cols=184  Identities=11%  Similarity=0.097  Sum_probs=108.4

Q ss_pred             CCcceEEEccC-CCEE-EEecCCeEEEEec-C--------C--c-eEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceE
Q 022967           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLHK-N--------G--T-WENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLL  140 (289)
Q Consensus        77 ~~p~~l~~d~~-g~l~-v~~~~g~i~~~~~-~--------g--~-~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~  140 (289)
                      ..+.++++.++ ++++ ++..+|.|..++. .        +  . ...+........ ++++++++. ++++... ..|.
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEE
Confidence            45788999986 5555 6667899999982 2        1  1 222233334456 999998876 5555433 4566


Q ss_pred             EEe-CCC---eEEEE--eccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC----e
Q 022967          141 KVT-EEG---VTVLA--SHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN----E  209 (289)
Q Consensus       141 ~~~-~~g---~~~~~--~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~----~  209 (289)
                      .++ ..+   ...+.  ....+ ....+.++++.| ++.++++...                 .+.|..+|.+++    .
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCSCSSSC
T ss_pred             EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCCCcc
Confidence            666 432   11111  01111 112467899999 5677766432                 477888887754    2


Q ss_pred             EEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC-CEEEEE
Q 022967          210 TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAI  281 (289)
Q Consensus       210 ~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~  281 (289)
                      ...+......++.++|+|+++.++++....+.|..||+..... ....+. ...+....+....+| .++++.
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECSSCTTEEEEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECCCCCCEEEEE
Confidence            2233333455788999999987777766778999999864221 111221 222344567777777 344443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.12  E-value=0.0006  Score=65.17  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=95.8

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~  149 (289)
                      ....++++.|+|.+. ++..+|.|..|+ .+|+... +....+... .++|.++|.++++ .....|..++ .++  ...
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            457889999988865 677889999999 5565433 332233344 8999999875554 4434577777 566  333


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEE-eeCCCCCcceEEEec
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSI-LLDSLFFANGVALSK  227 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~-~~~~~~~p~gl~~~~  227 (289)
                      +... .    .....+++.|+|...++..                 ..+.|..++.+++ .... +.........++|+|
T Consensus        93 ~~~~-~----~~v~~~~~s~~~~~l~~~~-----------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A           93 FEAH-P----DYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             EECC-S----SCEEEEEECSSSSEEEEEE-----------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             EecC-C----CCEEEEEEeCCCCEEEEEc-----------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence            3211 1    2467899999997544432                 1366777776654 3333 333334457889999


Q ss_pred             -CCCEEEEEeCCCCeEEEEEecCC
Q 022967          228 -DEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       228 -d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                       +++.++.+ ...+.|..|++.+.
T Consensus       151 ~~~~~l~~~-~~dg~v~vwd~~~~  173 (814)
T 3mkq_A          151 KDPSTFASG-CLDRTVKVWSLGQS  173 (814)
T ss_dssp             TEEEEEEEE-ETTSEEEEEETTCS
T ss_pred             CCCCEEEEE-eCCCeEEEEECCCC
Confidence             66655554 55688999998653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.11  E-value=6.9e-05  Score=74.33  Aligned_cols=176  Identities=7%  Similarity=-0.020  Sum_probs=107.7

Q ss_pred             CcceEEEc-cCCCEEEEecCCeEEEEec-CCceEEeeeecC-cCccCeEEcCCCc-EEEEeCCCceE-EEe-CCC-eEEE
Q 022967           78 GPEDVCVD-RNGVLYTATRDGWIKRLHK-NGTWENWKLIGG-DTLLGITTTQENE-ILVCDADKGLL-KVT-EEG-VTVL  150 (289)
Q Consensus        78 ~p~~l~~d-~~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~~-~p~~gl~~d~~g~-l~v~~~~~~i~-~~~-~~g-~~~~  150 (289)
                      ...++++. |+|+..+...++.|+.++. ++....+....+ ... .+++. ||. |+++.....++ .++ ..+ ...+
T Consensus       297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l  374 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF  374 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceEe
Confidence            36788999 9887443233788999984 455444333333 344 67777 775 55544445688 777 445 4443


Q ss_pred             EeccCCccccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecC
Q 022967          151 ASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d  228 (289)
                      . .    ....+..++++|||+. +++..                  .+.|+.+|.++++...+..+ ......++|+||
T Consensus       375 ~-~----~~~~~~~~~~SpDG~~la~~~~------------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          375 E-E----NLGNVFAMGVDRNGKFAVVAND------------------RFEIMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             C-C----CCCSEEEEEECTTSSEEEEEET------------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             c-C----CccceeeeEECCCCCEEEEECC------------------CCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence            2 1    1134668999999974 44432                  35799999988877666533 333478999999


Q ss_pred             CCEEEEEeCC---------CCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEe
Q 022967          229 EDYLVVCETF---------KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      |++|.++...         ...|+.+|+++..   ...+. ........++...+|. |+++..
T Consensus       432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~-~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT-TENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS-CSSSBEEEEEECTTSCEEEEEES
T ss_pred             CCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEee-CCCcccCCceEcCCCCEEEEEec
Confidence            9988766432         2478999877532   11111 1112234577788885 555554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.0013  Score=56.17  Aligned_cols=139  Identities=12%  Similarity=0.036  Sum_probs=83.2

Q ss_pred             CccCeEEcC--CCcEEEE-eCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccc
Q 022967          118 TLLGITTTQ--ENEILVC-DADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (289)
Q Consensus       118 p~~gl~~d~--~g~l~v~-~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~  192 (289)
                      .. .+++++  +++++++ .....+..+| .++ ........   .......+++.|||.+.++...             
T Consensus       128 v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~pdg~~lasg~~-------------  190 (343)
T 3lrv_A          128 II-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHKDSLLLALYSP-------------  190 (343)
T ss_dssp             EE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECTTSCEEEEECT-------------
T ss_pred             EE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCCceEEEEECCCCCEEEEEcC-------------
Confidence            44 888988  8887774 4445577777 556 32221111   1124678999999987776432             


Q ss_pred             eecCCCEEEEEeCCCCeEE--EeeC-CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCC--
Q 022967          193 EAKPHGKLLKYDPSLNETS--ILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGP--  266 (289)
Q Consensus       193 ~~~~~g~i~~~~~~~~~~~--~~~~-~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p--  266 (289)
                          .+.|..+|..+++..  .+.. .......++|+|++.+|..+. . +.|..||+..... ...+.+..  ...+  
T Consensus       191 ----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~~--~~~~~~  262 (343)
T 3lrv_A          191 ----DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYTI--PEFKTG  262 (343)
T ss_dssp             ----TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCBC-------C
T ss_pred             ----CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeeccccc--cccccc
Confidence                467888888766543  3333 244567899999999777776 3 4899999865322 11111100  1122  


Q ss_pred             -CceeeCCCCCEEEEE
Q 022967          267 -DNIKLAPDGSFWIAI  281 (289)
Q Consensus       267 -~~i~~d~~G~lwv~~  281 (289)
                       ..++++.+|.+.++.
T Consensus       263 ~~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAY  278 (343)
T ss_dssp             CEEEEECTTSSEEEEE
T ss_pred             ceEEEECCCCCEEEEe
Confidence             238888888766663

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.11  E-value=5.3e-05  Score=66.69  Aligned_cols=179  Identities=14%  Similarity=0.076  Sum_probs=100.3

Q ss_pred             EccCCCEEEEecCCeEEEEec-C-C-ceEEeee-e-cCcCccCeEEcC--CCcEEEEeCCC----ceEEEeCCC--eEEE
Q 022967           84 VDRNGVLYTATRDGWIKRLHK-N-G-TWENWKL-I-GGDTLLGITTTQ--ENEILVCDADK----GLLKVTEEG--VTVL  150 (289)
Q Consensus        84 ~d~~g~l~v~~~~g~i~~~~~-~-g-~~~~~~~-~-~~~p~~gl~~d~--~g~l~v~~~~~----~i~~~~~~g--~~~~  150 (289)
                      .|.++.||+++..| +++++. + | .++.... . ..... .|++|+  .+.||++....    +|++.++.|  .+.+
T Consensus        19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~   96 (394)
T 3b7f_A           19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEA   96 (394)
T ss_dssp             CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred             CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceEC
Confidence            45578999999766 777764 3 2 4554321 1 22345 899997  77899986544    688877555  5544


Q ss_pred             Eec--cCCc-------cccCccceEEcC---CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--
Q 022967          151 ASH--VNGS-------RINLADDLIAAT---DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--  216 (289)
Q Consensus       151 ~~~--~~~~-------~~~~~~~l~~~~---dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--  216 (289)
                      ...  ....       .......|++++   ++.||++..                  .+.|++.+-.+...+.+...  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl~~S~DgG~tW~~~~~~~~  158 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGLFRSTDHGASWEPVAGFND  158 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEEEEESSTTSBCEECHHHHT
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcEEEEcCCCCCeEECcCccC
Confidence            321  1111       112344688886   578999753                  26799887655555554210  


Q ss_pred             ---------------C--CCcceEEEec-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCC-------CCCCce
Q 022967          217 ---------------L--FFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLP-------GGPDNI  269 (289)
Q Consensus       217 ---------------~--~~p~gl~~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~-------~~p~~i  269 (289)
                                     .  .....|+++| +.+.+|++.. ...|++.+-.|.+......-..  .++       .....|
T Consensus       159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i  237 (394)
T 3b7f_A          159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCV  237 (394)
T ss_dssp             CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEE
T ss_pred             CccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEE
Confidence                           0  1123577877 3456888743 2567776433433221110000  011       113457


Q ss_pred             eeCCC--CCEEEEEeC
Q 022967          270 KLAPD--GSFWIAILQ  283 (289)
Q Consensus       270 ~~d~~--G~lwv~~~~  283 (289)
                      ++|.+  +.+|+++..
T Consensus       238 ~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          238 VQHPAAPDILYQQNHC  253 (394)
T ss_dssp             EECSSSTTEEEEEETT
T ss_pred             EECCCCCCEEEEEcCC
Confidence            78875  789998743

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.11  E-value=0.00079  Score=59.36  Aligned_cols=187  Identities=10%  Similarity=0.100  Sum_probs=104.3

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCc------------eEEeeeec------------CcCccCeEEcCCC--
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT------------WENWKLIG------------GDTLLGITTTQEN--  128 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~------------~~~~~~~~------------~~p~~gl~~d~~g--  128 (289)
                      ..-.+++++++|++. ++..+|.|..++ .+++            ...+....            .... .+++.+++  
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~  107 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNA  107 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCc
Confidence            345678999988866 667889999998 3332            22222222            2344 89999886  


Q ss_pred             cEEE-EeCCCceEEEe-CCC-eEEEE------------------------------------eccCCccccCccceEEcC
Q 022967          129 EILV-CDADKGLLKVT-EEG-VTVLA------------------------------------SHVNGSRINLADDLIAAT  169 (289)
Q Consensus       129 ~l~v-~~~~~~i~~~~-~~g-~~~~~------------------------------------~~~~~~~~~~~~~l~~~~  169 (289)
                      ..++ +..+..|..++ .++ .....                                    .............+++.+
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            4444 44434455555 322 11000                                    000001112466889999


Q ss_pred             CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-CeEEEe--------eCCCCCcceEEEecCC-CEEEEEeCCC
Q 022967          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSIL--------LDSLFFANGVALSKDE-DYLVVCETFK  239 (289)
Q Consensus       170 dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~--------~~~~~~p~gl~~~~d~-~~l~v~~~~~  239 (289)
                      +|.++++. .                 .+.|..+|.+. ++....        .........++|+|++ +.|+.+ ...
T Consensus       188 ~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~d  248 (447)
T 3dw8_B          188 DYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-SSK  248 (447)
T ss_dssp             TSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-ETT
T ss_pred             CCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE-eCC
Confidence            99877764 2                 36788888762 222211        1223345788999998 644444 556


Q ss_pred             CeEEEEEecCCCCcc--eeeeeccCC-----------CCCCceeeCCCCCEEEEEeC
Q 022967          240 FRCLKYWLKGESKEQ--TEIFVENLP-----------GGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       240 ~~i~~~~~~~~~~~~--~~~~~~~~~-----------~~p~~i~~d~~G~lwv~~~~  283 (289)
                      +.|..||+.......  ...+.....           +....++...+|.+.++...
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            889999986543211  122221110           13556888889887776544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.10  E-value=0.00013  Score=61.87  Aligned_cols=137  Identities=14%  Similarity=0.252  Sum_probs=88.9

Q ss_pred             EEEccCCCEEEEe--cCCeEEEEecCCc-eEEeeeecCcCccCeEEcCCCcEEEEeCC--------------CceEEEeC
Q 022967           82 VCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDAD--------------KGLLKVTE  144 (289)
Q Consensus        82 l~~d~~g~l~v~~--~~g~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~--------------~~i~~~~~  144 (289)
                      ++.+ ++.||+..  .+++|++++.+|. .+.+..  ..+. .|..+ ++.||.+...              ..|++++.
T Consensus        21 ~~~~-g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCES-DGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DTAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEE-TTEEEEEEGGGTTEEEEEETTSCSCEEEEE--EEEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEe-CCEEEEEeCCCCceEEEEcCCCCCCEEccC--Ccee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            3443 77899876  4688999998884 333333  2233 56554 3468777532              35888885


Q ss_pred             CC--eEEEEeccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcc
Q 022967          145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (289)
Q Consensus       145 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~  221 (289)
                      +|  .+.+...         .+..+.++| .||+++..              ......|++++.++...+.+.....   
T Consensus        96 dg~~~~~l~~~---------~~~~~s~~g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~---  149 (302)
T 3s25_A           96 NGHGSTVLDPD---------PCIYASLIGNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL---  149 (302)
T ss_dssp             TSCCCEEEECS---------CEEEEEEETTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC---
T ss_pred             CCCcceEeecC---------CccEEEEeCCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc---
Confidence            55  4444331         122455554 79998710              0023579999999777666654422   


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                       .+++++++.||+++.+..+|++.+++|.
T Consensus       150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          150 -FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             -CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             -eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence             4568889999999988889999998874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.00065  Score=58.13  Aligned_cols=149  Identities=8%  Similarity=-0.021  Sum_probs=92.5

Q ss_pred             CcceEEEcc--CCCEE-EEecCCeEEEEe-cCCceEEee-eecC-cCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--e
Q 022967           78 GPEDVCVDR--NGVLY-TATRDGWIKRLH-KNGTWENWK-LIGG-DTLLGITTTQENEILVCD-ADKGLLKVT-EEG--V  147 (289)
Q Consensus        78 ~p~~l~~d~--~g~l~-v~~~~g~i~~~~-~~g~~~~~~-~~~~-~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~  147 (289)
                      ...++++.+  +|+++ ++..+|.|..++ .+++..... .... ... .++++++|.++++. ....|..+| .++  .
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC-EEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            356788888  88877 466889999999 455543322 2222 344 89999999877764 335577777 555  3


Q ss_pred             -EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC---CCCc---
Q 022967          148 -TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFA---  220 (289)
Q Consensus       148 -~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~---~~~p---  220 (289)
                       ..+..    ........+++.|+|...++...                  +.|..+|..+++.......   ...+   
T Consensus       206 ~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          206 SSRFPV----DEEAKIKEVKFADNGYWMVVECD------------------QTVVCFDLRKDVGTLAYPTYTIPEFKTGT  263 (343)
T ss_dssp             CEECCC----CTTSCEEEEEECTTSSEEEEEES------------------SBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred             ccEEec----cCCCCEEEEEEeCCCCEEEEEeC------------------CeEEEEEcCCCCcceeecccccccccccc
Confidence             33321    01135678999999986666432                  3677778765432111111   1122   


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ..++|+|++++|.++..+.+.|..|+.+.
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            24999999997777655468888888854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.07  E-value=0.00049  Score=63.24  Aligned_cols=185  Identities=11%  Similarity=0.001  Sum_probs=105.3

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCC----c-eEEeeeecCc-CccCeEEcC--CCcEEEEe-CCCceEEEe-CC
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNG----T-WENWKLIGGD-TLLGITTTQ--ENEILVCD-ADKGLLKVT-EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g----~-~~~~~~~~~~-p~~gl~~d~--~g~l~v~~-~~~~i~~~~-~~  145 (289)
                      ..+.++++.++|++.+...++.|..++ .++    + ...+...... .. .+++.+  +|+++++. ....+..++ .+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            457789999999877444478899998 445    3 3333333334 45 899999  99866654 333454455 21


Q ss_pred             C------eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCC
Q 022967          146 G------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (289)
Q Consensus       146 g------~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  219 (289)
                      +      .......... .......+++.|+|...++....             ....+.|+.+|. +.....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~-~~~~~~~~~~~~~  162 (615)
T 1pgu_A           98 DKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDS-GNSLGEVSGHSQR  162 (615)
T ss_dssp             EGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTT-CCEEEECCSCSSC
T ss_pred             Ccccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEEC-CCcceeeecCCcc
Confidence            1      0111111111 11346789999999765553320             011256777773 2334444444455


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC---CCCceeeCCC-CCEEEE
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG---GPDNIKLAPD-GSFWIA  280 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~-G~lwv~  280 (289)
                      ...++|+|+++.++++....+.|..||......  ...+. ....   ....+++.++ |++.++
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDR-THHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEEC-SSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce--eeeec-ccCCCCceEEEEEECCCCCCEEEE
Confidence            678999999985555556678899998654211  11121 1222   3456777777 765444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.07  E-value=0.001  Score=58.57  Aligned_cols=155  Identities=8%  Similarity=0.031  Sum_probs=91.2

Q ss_pred             cCCcceEEEccCCCEEEEecCCeEEEEecC--CceEEee--------eecCcCccCeEEcCCC-cEEEEe-CCCceEEEe
Q 022967           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKN--GTWENWK--------LIGGDTLLGITTTQEN-EILVCD-ADKGLLKVT  143 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~--g~~~~~~--------~~~~~p~~gl~~d~~g-~l~v~~-~~~~i~~~~  143 (289)
                      -....++++.++|+++++..++.|..++.+  ++.....        ....... .++++++| +++++. ....|..+|
T Consensus       177 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEEEEE
Confidence            345678999999987754478999999843  2222111        1122344 89999988 665554 334577777


Q ss_pred             -CCC-e-----EEEEeccCCcc-------ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC-C
Q 022967          144 -EEG-V-----TVLASHVNGSR-------INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-N  208 (289)
Q Consensus       144 -~~g-~-----~~~~~~~~~~~-------~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~  208 (289)
                       ..+ .     ..+........       ......+++.|+|.+.++..                 . +.|..+|... +
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~-~~v~iwd~~~~~  317 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------Y-LSVKVWDLNMEN  317 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------S-SEEEEEETTCCS
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------C-CeEEEEeCCCCc
Confidence             444 3     22211110000       01467899999998776532                 2 5677788764 3


Q ss_pred             eEEEeeCCCCC----------------cceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          209 ETSILLDSLFF----------------ANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       209 ~~~~~~~~~~~----------------p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +......+...                ...++|+|++++| ++-...+.|..||+.+.
T Consensus       318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred             cccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence            32111111111                1238999999966 55466789999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.06  E-value=0.00046  Score=59.83  Aligned_cols=184  Identities=12%  Similarity=0.013  Sum_probs=107.0

Q ss_pred             CCcceEEEccC----C---CEE-EEecCCeEEEEe-cCCc------eEEeeee-----cCcCccCeEEc----CCCcE-E
Q 022967           77 NGPEDVCVDRN----G---VLY-TATRDGWIKRLH-KNGT------WENWKLI-----GGDTLLGITTT----QENEI-L  131 (289)
Q Consensus        77 ~~p~~l~~d~~----g---~l~-v~~~~g~i~~~~-~~g~------~~~~~~~-----~~~p~~gl~~d----~~g~l-~  131 (289)
                      ....++++.++    |   ++. ++..++.|..++ .+++      ...+...     ..... .+++.    +++.. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34567888888    7   554 667889899988 3343      3433332     13445 89998    88875 5


Q ss_pred             EE-eCCCceEEEe-CC------C--eE-----EEEec--cCCccccCccceEEcCCCcEEEeeCCCccCcccccccccee
Q 022967          132 VC-DADKGLLKVT-EE------G--VT-----VLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (289)
Q Consensus       132 v~-~~~~~i~~~~-~~------g--~~-----~~~~~--~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~  194 (289)
                      ++ .....+..++ ..      +  +.     .+...  ........+..+++.++| ++++..                
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----------------  204 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----------------  204 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----------------
Confidence            54 4445566666 44      3  33     33210  001112356789999999 555433                


Q ss_pred             cCCCEEEEEeCCCCeEEEeeCC-------CCCcceEEEecCCCEEEEEeCCC---CeEEEEEecCCCCcceeeeecc---
Q 022967          195 KPHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCETFK---FRCLKYWLKGESKEQTEIFVEN---  261 (289)
Q Consensus       195 ~~~g~i~~~~~~~~~~~~~~~~-------~~~p~gl~~~~d~~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~---  261 (289)
                       ..+.|..+|..+++.......       ......++|+|+++.|+++. ..   +.|..||+.....  ...+...   
T Consensus       205 -~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~--~~~~~~~~~~  280 (397)
T 1sq9_A          205 -NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGER--IGSLSVPTHS  280 (397)
T ss_dssp             -TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCE--EEEECBC---
T ss_pred             -CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcc--cceeccCccc
Confidence             247788899876665443333       45567899999999766664 34   6899998764321  1112110   


Q ss_pred             ---------CCCCCCceeeCCCCCEEEEEe
Q 022967          262 ---------LPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       262 ---------~~~~p~~i~~d~~G~lwv~~~  282 (289)
                               .......++...+|.+.++..
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEe
Confidence                     223445678888886655543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.06  E-value=4.7e-05  Score=65.87  Aligned_cols=150  Identities=5%  Similarity=-0.069  Sum_probs=85.1

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE---eeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCCe--E
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN---WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEGV--T  148 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~---~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g~--~  148 (289)
                      .-.++++.++|++. ++..++.|..++ .++....   +........ .+++.++|+++++ ..+..+..++ .++.  .
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence            35678999988866 445788888888 3442222   222223344 8999988875554 4434566666 3321  1


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe----EEEeeC-CCCCcceE
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLD-SLFFANGV  223 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~~~~-~~~~p~gl  223 (289)
                      .... ..+ .......+++.|+|.+.++...                 .+.|..+|.++++    ...+.. .......+
T Consensus        92 ~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           92 QTLV-LLR-LNRAATFVRWSPNEDKFAVGSG-----------------ARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             CEEE-CCC-CSSCEEEEECCTTSSCCEEEES-----------------SSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             eeeE-ecc-cCCceEEEEECCCCCEEEEEec-----------------CCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            1111 111 1124678899999875544321                 3557777766544    233333 34456789


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEec
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +|+|+++.|+.+. ..+.|..||+.
T Consensus       153 ~~~~~~~~l~~~~-~d~~i~iwd~~  176 (377)
T 3dwl_C          153 DWHPNNVLLAAGC-ADRKAYVLSAY  176 (377)
T ss_dssp             EECTTSSEEEEEE-SSSCEEEEEEC
T ss_pred             EEcCCCCEEEEEe-CCCEEEEEEEE
Confidence            9999999666654 45789999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.0011  Score=56.72  Aligned_cols=181  Identities=12%  Similarity=0.141  Sum_probs=97.2

Q ss_pred             CcceEEEccC--CCEE-EEecCCeEEEEe-cCCceEEee---eecCcCccCeEEcCC--CcEEEE-eCCCceEEEe-CCC
Q 022967           78 GPEDVCVDRN--GVLY-TATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQE--NEILVC-DADKGLLKVT-EEG  146 (289)
Q Consensus        78 ~p~~l~~d~~--g~l~-v~~~~g~i~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~--g~l~v~-~~~~~i~~~~-~~g  146 (289)
                      ...++++.++  +++. ++..+|.|..++ .+++.....   ....... .+++.++  +.++++ .....+..++ ..+
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            3456777654  6655 667889999998 455422221   2223344 8899887  765554 4445566666 333


Q ss_pred             --eEEEEeccCCccccCccceEEcC-------------CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--
Q 022967          147 --VTVLASHVNGSRINLADDLIAAT-------------DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--  209 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~-------------dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--  209 (289)
                        .........   ......+++.|             ++.++++...                 .+.|..+|..++.  
T Consensus       136 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          136 GTTSPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQT  195 (379)
T ss_dssp             SCCCEEEEECC---TTCEEEEEECCCC----------CTTCEEEEEET-----------------TSCEEEEEEETTTTE
T ss_pred             CceeeEEecCC---CCceEEEEEcCccccccccccCCCCCCEEEEEeC-----------------CCeEEEEEecCCCcc
Confidence              222211111   12456788888             5765555322                 3556666544332  


Q ss_pred             EE---EeeCCCCCcceEEEecC---CCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCceeeCCCCCEEEE
Q 022967          210 TS---ILLDSLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       210 ~~---~~~~~~~~p~gl~~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~  280 (289)
                      ..   .+.........++|+|+   ++.|+.+ ...+.|..|++..............  .......++...+|.+.++
T Consensus       196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASV-SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  273 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             eeeEEEEecccCcEeEEEECCCCCCCCeEEEE-eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence            11   12222344578999999   6655555 4568899999875421111111111  2233445677777754433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.06  E-value=0.00057  Score=62.83  Aligned_cols=179  Identities=12%  Similarity=0.079  Sum_probs=104.3

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeC-CCceEEEe-CCC-eEEEEec
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~-~~~i~~~~-~~g-~~~~~~~  153 (289)
                      .|..+++.++|.+.+...++.+..++ .+++..........+. .+++. ...|+++.. ...+..++ .++ ...  ..
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~--~~  483 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS-AVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSF--DL  483 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE-EEEEC-SSEEEEEETTTSCEEEEETTEEEEEE--EC
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce-EEEEc-CCEEEEeecCCCeEEEEECCCccccc--cc
Confidence            45666666666666554566666666 3554333223334455 78887 334555554 45577777 444 321  11


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceEEEec----
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSK----  227 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl~~~~----  227 (289)
                      ..+ ....+..+++.|+|.+.++...                 .+.|..+|.++++......  .......++|+|    
T Consensus       484 ~~~-~~~~v~~~~~s~~g~~l~~~~~-----------------dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          484 KTP-LRAKPSYISISPSETYIAAGDV-----------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             SSC-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             cCC-ccCceEEEEECCCCCEEEEcCC-----------------CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc
Confidence            111 1235678999999986665432                 3678888987776544333  334567899999    


Q ss_pred             ------CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          228 ------DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       228 ------d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                            +++.|..+ ...+.|..|++.... .....+ .........+++..+|.|..+.
T Consensus       546 ~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~-~~~~~~-~~h~~~v~~l~~s~~~~l~s~~  602 (615)
T 1pgu_A          546 ANEEEIEEDLVATG-SLDTNIFIYSVKRPM-KIIKAL-NAHKDGVNNLLWETPSTLVSSG  602 (615)
T ss_dssp             ----CCSCCEEEEE-ETTSCEEEEESSCTT-CCEEET-TSSTTCEEEEEEEETTEEEEEE
T ss_pred             ccccccCCCEEEEE-cCCCcEEEEECCCCc-eechhh-hcCccceEEEEEcCCCCeEEec
Confidence                  99966666 445789999987531 111111 1222345567777777733333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.05  E-value=0.00036  Score=60.45  Aligned_cols=180  Identities=11%  Similarity=0.022  Sum_probs=100.9

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecCCceE-EeeeecCcCccCeEEcCCCc-EEEEe-CCCceEEEe-CC----C--e
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENE-ILVCD-ADKGLLKVT-EE----G--V  147 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~-l~v~~-~~~~i~~~~-~~----g--~  147 (289)
                      ..++++.+++.+. ++..++.|..++.+++.. .+........ .+++.+++. ++++. ....+..++ .+    +  +
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  244 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT-HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI  244 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEE-EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEE-EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence            4567888877755 666888999998655433 3333334455 899999987 55554 334566666 43    3  2


Q ss_pred             EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeC------CCCC
Q 022967          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLD------SLFF  219 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~------~~~~  219 (289)
                      ..+ . .    ......+++.| +|.+.++...                 .+.|..+|.++++. ..+..      ....
T Consensus       245 ~~~-~-~----~~~v~~~~~s~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          245 AEM-P-H----EKPVNAAYFNPTDSTKLLTTDQ-----------------RNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             EEE-E-C----SSCEEEEEECTTTSCEEEEEES-----------------SSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             EEe-c-C----CCceEEEEEcCCCCCEEEEEcC-----------------CCcEEEEECCCCcccccccccccccccccc
Confidence            222 1 1    13567899999 9976665432                 36788888765432 11110      0111


Q ss_pred             cceEEEecCCCEEEE--------EeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCCEEEEEeCc
Q 022967          220 ANGVALSKDEDYLVV--------CETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       220 p~gl~~~~d~~~l~v--------~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      +....|+|++..+.+        +....+.|..||+.....  ...+.. ...+....+++..+|.+.++..++
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~  373 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGDVLASGMGF  373 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSSEEEEEETT
T ss_pred             ceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEecCccEEEEecCC
Confidence            222344444443333        223567899999764322  122221 112344556888999877666543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.05  E-value=0.001  Score=61.89  Aligned_cols=171  Identities=9%  Similarity=0.076  Sum_probs=94.4

Q ss_pred             CcceEEEccCCC--EEEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEE
Q 022967           78 GPEDVCVDRNGV--LYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTV  149 (289)
Q Consensus        78 ~p~~l~~d~~g~--l~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~  149 (289)
                      ...++++.|++.  |..+..++.|..++ ..++... +........ .++|.++|+++++... ..+..++ .+|  ...
T Consensus       149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~-~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH-SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceE-EEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            346788888775  55677889999998 4444332 222233445 8999999987776443 4566677 566  333


Q ss_pred             EEec-cCC-ccccCccceEEcCCCcEEEeeCCC-ccCccccc-------------------------cccceecCCCEEE
Q 022967          150 LASH-VNG-SRINLADDLIAATDGSIYFSVAST-KFGLHNWG-------------------------LDLLEAKPHGKLL  201 (289)
Q Consensus       150 ~~~~-~~~-~~~~~~~~l~~~~dG~lyv~~~~~-~~~~~~~~-------------------------~~~~~~~~~g~i~  201 (289)
                      +... ... .-...+.++++.|||...++...- ...+.+..                         ..++.....+.+.
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            3110 000 011246788999999866654321 00000000                         0011111233344


Q ss_pred             EEeCCCCeEEEeeC-CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          202 KYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       202 ~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+++++++...... .......++++||++.|+.+. ..+.|..||+...
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTG  356 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCC
Confidence            45554443322222 233456789999999776664 4588999987643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.04  E-value=0.00037  Score=65.20  Aligned_cols=155  Identities=11%  Similarity=-0.020  Sum_probs=92.6

Q ss_pred             cceEEEccCCC-EEEEecC----------CeEEEEecC-------CceEEee-eecCcCccCeEEcCCCc-EEEEeCC--
Q 022967           79 PEDVCVDRNGV-LYTATRD----------GWIKRLHKN-------GTWENWK-LIGGDTLLGITTTQENE-ILVCDAD--  136 (289)
Q Consensus        79 p~~l~~d~~g~-l~v~~~~----------g~i~~~~~~-------g~~~~~~-~~~~~p~~gl~~d~~g~-l~v~~~~--  136 (289)
                      ..++++.+||+ |++...+          ..|++++.+       |+...+. ....... ++++.+||+ |+++...  
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT-GPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC-CCEECTTSSEEEEEEECTT
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc-CceECCCCCEEEEEECCCC
Confidence            45678899887 4444433          478888844       4555444 3334456 889999996 5444322  


Q ss_pred             ------CceEEEe-C-CC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          137 ------KGLLKVT-E-EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       137 ------~~i~~~~-~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                            ..|+.++ . +| .........+ .......+.+.|||++|++...               .....|+++|.++
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~~~~~---------------~~~~~l~~~~~~~  274 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIVATDR---------------TGWWNLHRVDPAT  274 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEEEECT---------------TSSCEEEEECTTT
T ss_pred             CCCCCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEEEECC---------------CCCeEEEEEECCC
Confidence                  2478888 5 45 2221111110 0124567899999998876532               1123799999877


Q ss_pred             CeEEEeeCCCCC---------cceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          208 NETSILLDSLFF---------ANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       208 ~~~~~~~~~~~~---------p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++.+.+......         ...++++++++.++.+..+..+|++++.++.
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  326 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG  326 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT
T ss_pred             CceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC
Confidence            776655332111         3467888888866665444556777776643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.04  E-value=0.00026  Score=59.97  Aligned_cols=179  Identities=13%  Similarity=0.021  Sum_probs=101.1

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCc----eEEeeeecCcCccCeEEcCCCc-EE-EEeCCCceEEEeC-CC-
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT----WENWKLIGGDTLLGITTTQENE-IL-VCDADKGLLKVTE-EG-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~----~~~~~~~~~~p~~gl~~d~~g~-l~-v~~~~~~i~~~~~-~g-  146 (289)
                      ....++++.++|.+. ++..++.|..++ ..+.    ............ .+++.++++ ++ .+.....|..++- +. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            445678888887754 777889999998 4444    333333333445 899988888 44 4454455777774 44 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCC---------CeEEEeeCC
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---------NETSILLDS  216 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~~~~~~~~~  216 (289)
                       ...+...   ........+++.+ +.++++...                 .+.|..+|.++         ++.......
T Consensus        91 ~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T 1yfq_A           91 SFQALTNN---EANLGICRICKYG-DDKLIAASW-----------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             SEEECBSC---CCCSCEEEEEEET-TTEEEEEET-----------------TSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ceEecccc---CCCCceEEEEeCC-CCEEEEEcC-----------------CCeEEEEcccccccccccccCCeeeEEee
Confidence             4322110   0112456888988 765555332                 36677777543         221111122


Q ss_pred             CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC-CCCcceeeeeccCCCCCCceeeCC-CCCEEEEE
Q 022967          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAI  281 (289)
Q Consensus       217 ~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~-~G~lwv~~  281 (289)
                      ......+++++++  ++++ ...+.|..|++.. ...... ............++..+ +|.+++..
T Consensus       150 ~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          150 KNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             CCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccce-eeecCCCCceeEEEECCCCCCEEEEE
Confidence            3345678888776  5555 4558899999875 322111 11112223456677777 66554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.00035  Score=58.28  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=93.3

Q ss_pred             cceEEEcc-CCCEE-EEecCCeEEEEecCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEe
Q 022967           79 PEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        79 p~~l~~d~-~g~l~-v~~~~g~i~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~  152 (289)
                      ...+.+.+ +++.+ ++..++.|..++.......+.. ...... .+++.+++.++++.....+..++ .++  +..+..
T Consensus       145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR-HLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             EEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEE-EEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhc
Confidence            44566655 55544 6678888888883333333333 223344 88898888876666656677788 555  333321


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCE
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDY  231 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~  231 (289)
                      .     ......+++.++|.|+.+..                  .+.|..+|..+++..... ........++++++++ 
T Consensus       224 ~-----~~~i~~~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-  279 (313)
T 3odt_A          224 H-----ESFVYCIKLLPNGDIVSCGE------------------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-  279 (313)
T ss_dssp             C-----SSCEEEEEECTTSCEEEEET------------------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-
T ss_pred             C-----CceEEEEEEecCCCEEEEec------------------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-
Confidence            1     12467899999997665543                  378888998766654333 3333557899999998 


Q ss_pred             EEEEeCCCCeEEEEEecCC
Q 022967          232 LVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++++ ...+.|..|++...
T Consensus       280 ~~~~-~~dg~i~iw~~~~~  297 (313)
T 3odt_A          280 IIVG-SSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEEE-ETTSCEEEEESCGG
T ss_pred             EEEE-eCCCcEEEEeCCCC
Confidence            4444 45688999998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.03  E-value=0.00023  Score=66.69  Aligned_cols=195  Identities=14%  Similarity=0.038  Sum_probs=102.1

Q ss_pred             CcceEEEccCCCEEEEe--c-CC--eEEEEecCCceEEeeeecCcCcc---------CeEEc--CCCc--EEEEeC-CCc
Q 022967           78 GPEDVCVDRNGVLYTAT--R-DG--WIKRLHKNGTWENWKLIGGDTLL---------GITTT--QENE--ILVCDA-DKG  138 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~--~-~g--~i~~~~~~g~~~~~~~~~~~p~~---------gl~~d--~~g~--l~v~~~-~~~  138 (289)
                      ....+++++++..|+..  . ++  .|+....+|....+.... ....         ..++.  +||+  |+++.. ...
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~  103 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR  103 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence            45566777665555554  1 33  344443455544443211 1110         23343  6775  455543 356


Q ss_pred             eEEEeCC----C-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC-----
Q 022967          139 LLKVTEE----G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-----  207 (289)
Q Consensus       139 i~~~~~~----g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-----  207 (289)
                      |+.++.+    + ...+.............+++++|||+ |+++.....        ..........|+.+|.++     
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------GEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------SSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------CCCCCCceeEEEEEECCCCcccc
Confidence            8888843    6 55543211000112356889999996 555432100        000001224799999987     


Q ss_pred             -CeEEEee-CCCCCcceEEEecCCCEEEEEeCCC-------CeEEEEEecC-CCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967          208 -NETSILL-DSLFFANGVALSKDEDYLVVCETFK-------FRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (289)
Q Consensus       208 -~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~~-------~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~l  277 (289)
                       ++.+.+. .+......++|+|||++|+++....       ..|+.+++++ ........+..........++...||.+
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             6766665 5555567789999999888765332       5799999873 3222222222221223344555566655


Q ss_pred             EEEE
Q 022967          278 WIAI  281 (289)
Q Consensus       278 wv~~  281 (289)
                      ++..
T Consensus       256 ~~~~  259 (662)
T 3azo_A          256 IVAT  259 (662)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.01  E-value=0.0021  Score=56.87  Aligned_cols=184  Identities=10%  Similarity=-0.001  Sum_probs=110.6

Q ss_pred             CCcceEEEccCCC--EEEEecCCeEEEEec-CCc--------eEEeeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEe
Q 022967           77 NGPEDVCVDRNGV--LYTATRDGWIKRLHK-NGT--------WENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~--l~v~~~~g~i~~~~~-~g~--------~~~~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~  143 (289)
                      ....++++.+++.  |+++..+|.|..++. .+.        ...+........ .+++.+ ++.++++... ..|..++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3467899998766  446778899999993 211        112222223345 889987 5566665433 4566677


Q ss_pred             -CCC-----eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC-Ce-EEEee
Q 022967          144 -EEG-----VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE-TSILL  214 (289)
Q Consensus       144 -~~g-----~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~-~~-~~~~~  214 (289)
                       ..+     ...+.. .    ...++.+++.|++. ++++...                 .+.|..+|.+. +. ...+.
T Consensus       261 ~~~~~~~~~~~~~~~-~----~~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDA-H----TAEVNCLSFNPYSEFILATGSA-----------------DKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEEC-C----SSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEeec-C----CCCeEEEEeCCCCCCEEEEEeC-----------------CCeEEEEeCCCCCCCeEEee
Confidence             322     222211 1    13467899999885 6655432                 46788888764 22 33343


Q ss_pred             CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc----------eeeee-ccCCCCCCceeeCCCCC-EEEEEe
Q 022967          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ----------TEIFV-ENLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~----------~~~~~-~~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      ........++|+|+++.++++....++|..|++.......          ...+. ......+..+....+|. +.++..
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            3445567899999998778877777899999986421100          11111 11223467788888887 665554


Q ss_pred             C
Q 022967          283 Q  283 (289)
Q Consensus       283 ~  283 (289)
                      .
T Consensus       399 ~  399 (430)
T 2xyi_A          399 E  399 (430)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.00075  Score=58.08  Aligned_cols=176  Identities=11%  Similarity=0.111  Sum_probs=96.6

Q ss_pred             ccCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEcC----CC----cEEEEeCC---Cce--EEEe-CCC-eE
Q 022967           85 DRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQ----EN----EILVCDAD---KGL--LKVT-EEG-VT  148 (289)
Q Consensus        85 d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~----~g----~l~v~~~~---~~i--~~~~-~~g-~~  148 (289)
                      |+...+++++ ..++++.++.+|+...... .++++ ++.+-+    .|    .+++++..   +.|  +.+| ..+ ++
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            3455666554 5678999998887655433 25555 554432    12    24666654   334  5556 445 55


Q ss_pred             EEEecc-C-CccccCccceEE--cCC-Cc--EEEeeCCCccCccccccccceecCCCEEEEEeC---CCCeE--EEe--e
Q 022967          149 VLASHV-N-GSRINLADDLIA--ATD-GS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP---SLNET--SIL--L  214 (289)
Q Consensus       149 ~~~~~~-~-~~~~~~~~~l~~--~~d-G~--lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~---~~~~~--~~~--~  214 (289)
                      .+.... + +.....+++++.  +++ |.  +|+++.                  .|.+..|..   ..+..  +.+  .
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k------------------~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK------------------EGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS------------------SSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC------------------CCeEEEEEEEeCCCCcccceEEEEe
Confidence            442210 1 123467899998  774 55  555543                  244444322   22211  111  1


Q ss_pred             CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc-eee-ee--ccCCCCCCceeeC--CCC--CEEEEE
Q 022967          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-TEI-FV--ENLPGGPDNIKLA--PDG--SFWIAI  281 (289)
Q Consensus       215 ~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~-~~--~~~~~~p~~i~~d--~~G--~lwv~~  281 (289)
                      .....+-|++.++..++||+++-. ..|++|+.+...-.. ... .+  ..+..-+.||+++  .+|  .|++++
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             cCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            223468899999989999999987 679999965332111 111 11  1222357888884  443  455555

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.00  E-value=0.0024  Score=54.32  Aligned_cols=202  Identities=14%  Similarity=0.079  Sum_probs=107.6

Q ss_pred             CcceEEEccC----CC-EEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcC-CCcEEEE-eCCCceEEEe-CCC-
Q 022967           78 GPEDVCVDRN----GV-LYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG-  146 (289)
Q Consensus        78 ~p~~l~~d~~----g~-l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~-~g~l~v~-~~~~~i~~~~-~~g-  146 (289)
                      ...++++.++    |. |+++..+|.|..++ .+++...... ...... .+++.+ +++++++ .....|..++ .++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            3566788777    44 44777899999999 4555433322 333445 899988 7776555 4445577778 556 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCC-CccCcccc-------------------------------------
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVAS-TKFGLHNW-------------------------------------  187 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~-~~~~~~~~-------------------------------------  187 (289)
                       ...+.. ..+ ....+..+++.++|...++... ......+.                                     
T Consensus       150 ~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          150 LVAIFGG-VEG-HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             EEEEECS-TTS-CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             EEEEecc-ccc-ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence             333311 011 1124567788887764443321 11100000                                     


Q ss_pred             -------------ccccceecCCCEEEEEeCCCCe---------------EEEeeCCCCCcceEEEecC--CCEEEEEeC
Q 022967          188 -------------GLDLLEAKPHGKLLKYDPSLNE---------------TSILLDSLFFANGVALSKD--EDYLVVCET  237 (289)
Q Consensus       188 -------------~~~~~~~~~~g~i~~~~~~~~~---------------~~~~~~~~~~p~gl~~~~d--~~~l~v~~~  237 (289)
                                   ...++.....+.|..+|..++.               ...+.........++++++  ++.|+.+ .
T Consensus       228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~  306 (366)
T 3k26_A          228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-N  306 (366)
T ss_dssp             SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE-C
T ss_pred             cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE-e
Confidence                         0001122234555556544321               1111222233566788888  8866655 5


Q ss_pred             CCCeEEEEEecCCCCcc--eeeeecc-CCCCCCceeeCCCCCEEEEEeC
Q 022967          238 FKFRCLKYWLKGESKEQ--TEIFVEN-LPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       238 ~~~~i~~~~~~~~~~~~--~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      ..+.|..|++.......  ...+... .......++...+|++.++...
T Consensus       307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  355 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD  355 (366)
T ss_dssp             TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence            56889999987543221  1122211 0234566888888876665543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.00053  Score=66.99  Aligned_cols=149  Identities=13%  Similarity=0.055  Sum_probs=93.0

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g--~~~~~  151 (289)
                      ....+++++++|++. ++..+|.|..|+..+...........++..++|.+ |+ |..+..++.|..+| .++  +..+.
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~   96 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF   96 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc
Confidence            456889999998876 67789999999854332222222223333899988 77 44455545677777 555  44442


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee------------CCCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------------DSLFF  219 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~------------~~~~~  219 (289)
                      .  .    .....++++|+|...++..                 ..+.|..+|.++++...+.            .....
T Consensus        97 ~--~----~~V~~v~~sp~g~~l~sgs-----------------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~  153 (902)
T 2oaj_A           97 V--P----GKITSIDTDASLDWMLIGL-----------------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP  153 (902)
T ss_dssp             C--S----SCEEEEECCTTCSEEEEEE-----------------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred             C--C----CCEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence            1  1    2467889999997554432                 2467888888776643211            11234


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ...++|+|++..++++....+.| .||+...
T Consensus       154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~  183 (902)
T 2oaj_A          154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVEN  183 (902)
T ss_dssp             CCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred             eEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence            56899999754344454666788 8987653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.0014  Score=54.42  Aligned_cols=177  Identities=12%  Similarity=0.120  Sum_probs=103.4

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEecCCce-EEeeeecCcCccCeEEcC-CCcEEE-EeCCCceEEEeCCC-eEEEEecc
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQ-ENEILV-CDADKGLLKVTEEG-VTVLASHV  154 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~-~g~l~v-~~~~~~i~~~~~~g-~~~~~~~~  154 (289)
                      ..++.++ ++.++++..++.|..++ .++. ..+........ .+.+.+ ++++++ +.....+..++... ...+... 
T Consensus       107 i~~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  182 (313)
T 3odt_A          107 VCSLSFQ-DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVW-DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI-  182 (313)
T ss_dssp             EEEEEEE-TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEE-EEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSS-
T ss_pred             EEEEEec-CCEEEEEeCCCCEEEEc-CCcEEEecccCCCcee-EEEEccCCCCEEEEEECCCCEEEEecCceEEEEecc-
Confidence            4556664 34556777889999998 3433 22322233344 666655 555444 44445566666322 3333211 


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCCEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~~l~  233 (289)
                         .......+++.+++.++.+..                  .+.|..+|..+++... +.........++++|++. ++
T Consensus       183 ---~~~~i~~~~~~~~~~~~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~  240 (313)
T 3odt_A          183 ---HNDVVRHLAVVDDGHFISCSN------------------DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV  240 (313)
T ss_dssp             ---CSSCEEEEEEEETTEEEEEET------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred             ---CcccEEEEEEcCCCeEEEccC------------------CCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence               123467889999998555442                  3678888987665443 333344567899999985 55


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      .+ ...+.|..||+.....  ...+. ........++...+|.+.++..++.
T Consensus       241 ~~-~~dg~v~iwd~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~  288 (313)
T 3odt_A          241 SC-GEDRTVRIWSKENGSL--KQVIT-LPAISIWSVDCMSNGDIIVGSSDNL  288 (313)
T ss_dssp             EE-ETTSEEEEECTTTCCE--EEEEE-CSSSCEEEEEECTTSCEEEEETTSC
T ss_pred             EE-ecCCEEEEEECCCCce--eEEEe-ccCceEEEEEEccCCCEEEEeCCCc
Confidence            55 4568899998764322  12221 2223345677888888766665554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.96  E-value=0.0011  Score=63.20  Aligned_cols=179  Identities=9%  Similarity=-0.023  Sum_probs=105.2

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g--~~~  149 (289)
                      ....++++.++|... ++..+|.|..++ .+|+... +....+... .+++.++|..++ +.....+..++ ..+  ...
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence            345678999988755 777889999999 5565433 332334445 899999987544 44434566666 443  222


Q ss_pred             EEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCC-CCCcceEEEe
Q 022967          150 LASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS-LFFANGVALS  226 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~-~~~p~gl~~~  226 (289)
                      ......    .....+++.| +|.++++...                 .+.|..+|..++... .+... ......++++
T Consensus       135 ~~~~~~----~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~  193 (814)
T 3mkq_A          135 TFEGHE----HFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY  193 (814)
T ss_dssp             EEECCS----SCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCCCEEEEC
T ss_pred             EEcCCC----CcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcceeEEecCCCCCEEEEEEE
Confidence            211111    2467889999 7765555332                 367888887644322 22222 2456778999


Q ss_pred             c--CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          227 K--DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       227 ~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      |  +++.++++ ...+.|..|+......  ...+. ...+....++..++|.+.++.
T Consensus       194 ~~~~~~~l~~~-~~dg~i~~~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~  246 (814)
T 3mkq_A          194 PLPDKPYMITA-SDDLTIKIWDYQTKSC--VATLE-GHMSNVSFAVFHPTLPIIISG  246 (814)
T ss_dssp             CSTTCCEEEEE-CTTSEEEEEETTTTEE--EEEEE-CCSSCEEEEEECSSSSEEEEE
T ss_pred             ECCCCCEEEEE-eCCCEEEEEECCCCcE--EEEEc-CCCCCEEEEEEcCCCCEEEEE
Confidence            8  88866655 5568899998764321  11111 122234456666666544433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.96  E-value=0.00016  Score=61.56  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=84.4

Q ss_pred             EccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcC---CCcEEE-EeCCCceEEEe-CCC--eEEEEe-c
Q 022967           84 VDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ---ENEILV-CDADKGLLKVT-EEG--VTVLAS-H  153 (289)
Q Consensus        84 ~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~---~g~l~v-~~~~~~i~~~~-~~g--~~~~~~-~  153 (289)
                      +.++++++ ++..++.|..++ .+++............ .+++++   ++..++ +.....+..++ .++  ...+.. .
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            45677765 666889999999 4455433333334455 899987   676544 44445566666 333  222210 0


Q ss_pred             cCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--------------------EEE
Q 022967          154 VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--------------------TSI  212 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--------------------~~~  212 (289)
                      ..+ .......+++.|+|. ++++...                 .+.|..+|.+.+.                    ...
T Consensus       255 ~~~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          255 EKA-HKSTVWQVRHLPQNRELFLTAGG-----------------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEC-CSSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             cCC-CcCCEEEEEECCCCCcEEEEEeC-----------------CCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            001 113467889999987 4544322                 3455555533211                    122


Q ss_pred             eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          213 LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       213 ~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.........++|+|+++.|.++....+.|..|++..
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            2223344578899999997776666678999998763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.95  E-value=0.003  Score=54.91  Aligned_cols=178  Identities=13%  Similarity=0.058  Sum_probs=103.0

Q ss_pred             eEEEccC--CCEEEEecCCeEEEEe-cCCceEEee-e-----ecCcCccCeEEcC-CCcEEEEeCC-CceEEEe-C-CC-
Q 022967           81 DVCVDRN--GVLYTATRDGWIKRLH-KNGTWENWK-L-----IGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-E-EG-  146 (289)
Q Consensus        81 ~l~~d~~--g~l~v~~~~g~i~~~~-~~g~~~~~~-~-----~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~-~-~g-  146 (289)
                      ++.+.++  ..|+.+..++.|..|+ .+|+..... .     ...... .+.+.+ +++++++... ..+..+| . .+ 
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~  240 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR  240 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence            3444443  3477888899999999 455433221 1     112233 667754 6666665433 4566666 3 33 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--------C
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--------L  217 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--------~  217 (289)
                       +..+...     ....+.+++.|+|..+++...                 .+.|..+|..+++.......        .
T Consensus       241 ~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          241 AVRTYHGH-----EGDINSVKFFPDGQRFGTGSD-----------------DGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CCEEECCC-----SSCCCEEEECTTSSEEEEECS-----------------SSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             ceEEECCc-----CCCeEEEEEecCCCeEEEEcC-----------------CCeEEEEECCCCcEEEEeccccccccccc
Confidence             3333211     124678999999987776542                 46788888876654433221        1


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE-QTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .....++|+|+++.|+.+ ...+.|+.||....... ..........+....+++.++|.+.++..
T Consensus       299 ~~v~~~~~s~~g~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAG-YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             CSCSEEEECSSSSEEEEE-CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             CceEEEEECCCCCEEEEE-ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence            224678999999966665 55688999987533211 11111112224456788888887655543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.00082  Score=58.54  Aligned_cols=152  Identities=11%  Similarity=0.077  Sum_probs=95.1

Q ss_pred             CCcceEEEccC-CCEE-EEecCCeEEEEe-cCCceEEeeee-------cCcCccCeEEcCCC-cEEEE-eCCC---ceEE
Q 022967           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLH-KNGTWENWKLI-------GGDTLLGITTTQEN-EILVC-DADK---GLLK  141 (289)
Q Consensus        77 ~~p~~l~~d~~-g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-------~~~p~~gl~~d~~g-~l~v~-~~~~---~i~~  141 (289)
                      ....++++.++ +.++ ++..++.|..++ ..++.......       ..... .+++.+++ .++++ ....   .|..
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS-VVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE-EEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE-EEEECCCCCCEEEEEECCCCCceEEE
Confidence            34567899987 5665 566889999999 44443322222       22344 89999887 45554 3333   5777


Q ss_pred             Ee-CCC---eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeC
Q 022967          142 VT-EEG---VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLD  215 (289)
Q Consensus       142 ~~-~~g---~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~  215 (289)
                      ++ .++   ...+..   + ....+..+++.| ++.++++...                 .+.|..+|.++++... +..
T Consensus       245 ~d~~~~~~~~~~~~~---~-~~~~v~~~~~s~~~~~~l~s~~~-----------------dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQ---G-HQKGILSLDWCHQDEHLLLSSGR-----------------DNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EETTSTTSCSBCCCS---C-CSSCEEEEEECSSCSSCEEEEES-----------------SSEEEEECSSSCCEEEEEEC
T ss_pred             EeCCCCCCCcEEeec---C-ccCceeEEEeCCCCCCeEEEEeC-----------------CCCEEEeeCCCCccceeecC
Confidence            77 433   222210   1 113467899998 8876665432                 4678888887665433 333


Q ss_pred             CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       216 ~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .......++|+|++..++++....+.|..|++...
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            34456789999998446666677789999998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.93  E-value=0.00016  Score=72.74  Aligned_cols=181  Identities=11%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~  151 (289)
                      ....++++.++|+.. ++..+|.|..++ .+++............ .+++.+++.++.+.....+..++ .++  ...+.
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence            345678999988755 666889999999 4555443333333344 78888888887777656677788 666  44442


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~  230 (289)
                      ..     ......+++.|||.++++...                 .+.|..+|.++++...... .......++|+||++
T Consensus      1083 ~~-----~~~v~~~~~s~d~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A         1083 CH-----QGTVLSCAISSDATKFSSTSA-----------------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp             CC-----SSCCCCEEECSSSSSCEEECC-----------------SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred             cc-----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence            21     124678999999976655432                 3556666665544322222 223347789999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCc-ceeee-----eccCCCCCCceeeCCCCCEEEEE
Q 022967          231 YLVVCETFKFRCLKYWLKGESKE-QTEIF-----VENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~-~~~~~-----~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      .|..+. ..+.|..|++.+.... .....     .....+...++++.++|.+.++.
T Consensus      1141 ~lat~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1141 LLATGD-DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             EEEEEE-TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred             EEEEEe-CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence            666664 4577899998643221 11000     01122345668888888665544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.93  E-value=0.003  Score=54.07  Aligned_cols=151  Identities=11%  Similarity=0.061  Sum_probs=89.2

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEec-CCceEE---eeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--e
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWEN---WKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--V  147 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~---~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~  147 (289)
                      ..-.++++.++|++. ++..++.|..++. .+....   +........ .+++.++|+++++. .+..+..++ .++  .
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence            345678999988766 6668888888883 343322   222223345 89999999866654 334566666 433  3


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE---EeeCCCCCcceEE
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSLFFANGVA  224 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~p~gl~  224 (289)
                      +.+.. ..+ .......+++.|+|.+.++...                 .+.|..++.++++..   .+.........++
T Consensus       141 ~~~~~-~~~-h~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~  201 (345)
T 3fm0_A          141 ECVSV-LNS-HTQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDDWVCCATLEGHESTVWSLA  201 (345)
T ss_dssp             EEEEE-ECC-CCSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             EEEEE-ecC-cCCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence            22211 111 1124568899999976655332                 244555555444432   2222334557899


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEec
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      |+|+++.|..+ ...+.|..|+..
T Consensus       202 ~sp~g~~l~s~-s~D~~v~iW~~~  224 (345)
T 3fm0_A          202 FDPSGQRLASC-SDDRTVRIWRQY  224 (345)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEEEE
T ss_pred             ECCCCCEEEEE-eCCCeEEEeccc
Confidence            99999966555 455778888763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.93  E-value=0.0015  Score=65.72  Aligned_cols=185  Identities=12%  Similarity=0.100  Sum_probs=110.9

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTV  149 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~  149 (289)
                      ..-.++++.++|.+. ++..+|.|..|+ .+++.. .+....+... .+++.++|++.++... ..|..++ .+|  +..
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            445678999988876 566889999999 455533 3333334445 8999999976665433 4577777 566  443


Q ss_pred             EEeccCCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEe
Q 022967          150 LASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALS  226 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~  226 (289)
                      +...     ......+++.+++  .+.++..                 ..+.|..+|.++++..... ........++|+
T Consensus       695 ~~~~-----~~~v~~~~~~~~~~~~~l~sg~-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          695 YDEH-----SEQVNCCHFTNKSNHLLLATGS-----------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EECC-----SSCEEEEEECSSSSCCEEEEEE-----------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             EcCC-----CCcEEEEEEecCCCceEEEEEe-----------------CCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            3221     1245678888853  3444432                 2466888888766654333 333455788999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceee----e------eccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEI----F------VENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~----~------~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      |+++.++.+ ...+.|..||+........-.    +      ..........++...+|...++...+.
T Consensus       753 p~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          753 PDDELLASC-SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             SSTTEEEEE-ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             cCCCEEEEE-ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence            999966655 455889999976432111000    0      001112345577778887666654443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.90  E-value=0.0066  Score=50.88  Aligned_cols=149  Identities=9%  Similarity=-0.013  Sum_probs=88.2

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~  151 (289)
                      -.++++.+++++. ++..++.|..++ .+++.. .+........ .+++.+++.++++... ..|..++ .++  .....
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            4567788877755 677889999999 456543 3333334455 8999999886665433 4566667 444  22221


Q ss_pred             eccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeCC-CCCcceEEEec-
Q 022967          152 SHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDS-LFFANGVALSK-  227 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~-~~~p~gl~~~~-  227 (289)
                      ...    ......+++.| ++.++++...                 .+.|..+|...+.. ..+..+ ....+.+.+.+ 
T Consensus       137 ~~h----~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (304)
T 2ynn_A          137 EGH----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL  195 (304)
T ss_dssp             CCC----CSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS
T ss_pred             ccc----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceeccCCcCcEEEEEEEEc
Confidence            111    12467889998 5666665332                 36677777654332 122222 23334566765 


Q ss_pred             -CCCEEEEEeCCCCeEEEEEecCC
Q 022967          228 -DEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       228 -d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                       +++.| ++....+.|..||+...
T Consensus       196 ~~~~~l-~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          196 PDKPYM-ITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             TTCCEE-EEEETTSEEEEEETTTT
T ss_pred             CCCCEE-EEEcCCCeEEEEeCCCC
Confidence             56644 44456688999987643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.88  E-value=0.0027  Score=53.89  Aligned_cols=201  Identities=12%  Similarity=0.013  Sum_probs=103.4

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEE--cCCCcEEEE-eCCCceEEEe-CCC--eE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITT--TQENEILVC-DADKGLLKVT-EEG--VT  148 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~--d~~g~l~v~-~~~~~i~~~~-~~g--~~  148 (289)
                      ....++++.+++++. ++..+|.|..++ .+++............ .+++  ++++.++++ .....+..++ .++  ..
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence            345678899888755 677889999999 4555444433334445 8888  788875554 4434566677 555  33


Q ss_pred             EEEeccCC--ccccCccceEEcCCCcEEEeeCCCccC----------ccc-----------cccccceecCCCEEEEEeC
Q 022967          149 VLASHVNG--SRINLADDLIAATDGSIYFSVASTKFG----------LHN-----------WGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       149 ~~~~~~~~--~~~~~~~~l~~~~dG~lyv~~~~~~~~----------~~~-----------~~~~~~~~~~~g~i~~~~~  205 (289)
                      .+......  .......-+....++.+.+-+......          ...           ....+......+.|..++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          166 VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred             EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence            33211000  000111122333344444333221000          000           0000223334556666665


Q ss_pred             CCCe----EEEeeCCCC------------CcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCce
Q 022967          206 SLNE----TSILLDSLF------------FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNI  269 (289)
Q Consensus       206 ~~~~----~~~~~~~~~------------~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i  269 (289)
                      +...    ...+.....            ....++++|+++.|+.+. ..+.|..||+.....  ...+ .........+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~-~~~~~~v~~~  321 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTK--LKTS-EQLDQPISAC  321 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEE--EEEC-CCCSSCEEEE
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCcE--EEEe-cCCCCCceEE
Confidence            5431    111111111            367889999999776664 457899999764321  1111 1222345678


Q ss_pred             eeCCCCCEEEEEe
Q 022967          270 KLAPDGSFWIAIL  282 (289)
Q Consensus       270 ~~d~~G~lwv~~~  282 (289)
                      ++.++|.+.++..
T Consensus       322 ~~s~~g~~l~~~s  334 (368)
T 3mmy_A          322 CFNHNGNIFAYAS  334 (368)
T ss_dssp             EECTTSSCEEEEE
T ss_pred             EECCCCCeEEEEe
Confidence            8999996655543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.87  E-value=0.0029  Score=53.80  Aligned_cols=156  Identities=8%  Similarity=0.032  Sum_probs=96.6

Q ss_pred             EeccCCcCCcceEEEccC---CC--EEEEecCCeEEEEe-cCCc-eEEeeeec-----CcCccCeEEcCC----CcEEE-
Q 022967           70 RLGEGILNGPEDVCVDRN---GV--LYTATRDGWIKRLH-KNGT-WENWKLIG-----GDTLLGITTTQE----NEILV-  132 (289)
Q Consensus        70 ~~~~~~~~~p~~l~~d~~---g~--l~v~~~~g~i~~~~-~~g~-~~~~~~~~-----~~p~~gl~~d~~----g~l~v-  132 (289)
                      .+..+--....++++.|+   +.  ++++..++.|..++ .+++ ...+....     .... .+++.++    |.+++ 
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEE
Confidence            444443345677888863   33  66777788899998 3343 33332211     2234 7888776    54444 


Q ss_pred             EeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          133 CDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       133 ~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                      +.....|..++ .++  +..+.. .    ......+++.| ++.+.++...                 .+.|..+|.+++
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~  148 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVG-H----GNAINELKFHPRDPNLLLSVSK-----------------DHALRLWNIQTD  148 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEES-C----CSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTTT
T ss_pred             ecCCCEEEEEEchhceEeeeecC-C----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEEeecC
Confidence            44434577777 555  333321 1    13567899999 8876665432                 467888888777


Q ss_pred             eEEEee----CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          209 ETSILL----DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       209 ~~~~~~----~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.....    ........++|+|+++.|+.+. ..+.|..||+..
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCC
Confidence            655443    2344567889999999776664 457899999764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.86  E-value=0.0018  Score=61.26  Aligned_cols=155  Identities=11%  Similarity=0.090  Sum_probs=87.6

Q ss_pred             ceEEEccCCCEE-EE-ecCC----eEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCc-------------
Q 022967           80 EDVCVDRNGVLY-TA-TRDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-------------  138 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~-~~~g----~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~-------------  138 (289)
                      .++++.|||+.. ++ +..|    .|+.++ .+|+............ ++++.+||+ |+++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            357888988754 33 3333    788888 4555443222222345 799999986 666543222             


Q ss_pred             ---eEEEe-CCC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC----
Q 022967          139 ---LLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----  207 (289)
Q Consensus       139 ---i~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~----  207 (289)
                         |++.+ .++ . ..+....... -....++.++|||+ |+++....             ......|+.+|.++    
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDE-PKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCC-CeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECcccccc
Confidence               77777 444 2 1222211110 11245788999996 55543210             00135788888765    


Q ss_pred             --C--eEEEeeCCCCCcceEEEecCCCEEEEEeCC---CCeEEEEEecCC
Q 022967          208 --N--ETSILLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGE  250 (289)
Q Consensus       208 --~--~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~---~~~i~~~~~~~~  250 (289)
                        +  ....+...... ..-.++++|+.||+....   +.+|+++++++.
T Consensus       273 ~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             SCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             cCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence              3  34444433222 223588899988887543   357999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.86  E-value=0.0014  Score=56.40  Aligned_cols=144  Identities=10%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             ceEEEcc--CCC-EEEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEE
Q 022967           80 EDVCVDR--NGV-LYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL  150 (289)
Q Consensus        80 ~~l~~d~--~g~-l~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~  150 (289)
                      .++.+.+  +|+ |+.+..++.|..++ .+++... +........ .+++.++|.++++... ..+..+| ..+  ...+
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            4456655  455 45777899999999 5565433 322233445 8999999886665433 4466667 444  3322


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~  229 (289)
                      ...   ........+++.++|.+.++...                 .+.|..+|..+++... +.........++|+||+
T Consensus       279 ~~~---~~~~~~~~~~~s~~g~~l~~g~~-----------------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          279 SKE---SIIFGASSVDFSLSGRLLFAGYN-----------------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             CCT---TCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred             cCC---CcccceeEEEEeCCCCEEEEEEC-----------------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCC
Confidence            111   11124567899999987665432                 3668888876555433 33333455789999999


Q ss_pred             CEEEEEeCCCCeEEEE
Q 022967          230 DYLVVCETFKFRCLKY  245 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~  245 (289)
                      +.|..+ ...+.|..|
T Consensus       339 ~~l~sg-s~D~~v~vW  353 (354)
T 2pbi_B          339 TAFCSG-SWDHTLRVW  353 (354)
T ss_dssp             SCEEEE-ETTSEEEEE
T ss_pred             CEEEEE-cCCCCEEec
Confidence            965555 445677665

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.0026  Score=54.10  Aligned_cols=151  Identities=10%  Similarity=0.010  Sum_probs=84.9

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCC--------ceE-EeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CC
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG--------TWE-NWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EE  145 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g--------~~~-~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~  145 (289)
                      .-.++++.++|.+. ++..++.|..++.+.        +.. .+........ .+++.++|+++++. .+..+..++ ..
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            45678999988866 666889898887421        111 1212223345 89999999866654 334466666 22


Q ss_pred             -C--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE---EEeeCCCCC
Q 022967          146 -G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFF  219 (289)
Q Consensus       146 -g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~~~  219 (289)
                       +  .+.+.. ..+. ......+++.|+|.+.++...                 .+.|..+|..++..   ..+......
T Consensus       139 ~~~~~~~~~~-~~~h-~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~~  199 (330)
T 2hes_X          139 SGEEYECISV-LQEH-SQDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEGT  199 (330)
T ss_dssp             TCCCCEEEEE-ECCC-SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             CCCCeEEEEE-eccC-CCceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCCc
Confidence             2  222211 1111 124678999999987776432                 24455555433322   222223334


Q ss_pred             cceEEEecC--CCEEEEEeCCCCeEEEEEecC
Q 022967          220 ANGVALSKD--EDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       220 p~gl~~~~d--~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ...++|+|+  +. .+++....+.|..|++.+
T Consensus       200 v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          200 VWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEECCSSSSC-EEEEEETTSCEEEEEEEE
T ss_pred             EEEEEecCCCCee-EEEEEeCCCeEEEEEecC
Confidence            567899998  44 344445567888888754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.84  E-value=0.00062  Score=54.56  Aligned_cols=142  Identities=11%  Similarity=-0.010  Sum_probs=80.7

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEe-CCC-eEEE---EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceec
Q 022967          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVL---ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK  195 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~---~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~  195 (289)
                      .++++++|.||.. ....+++.+ .++ -...   ...+.....+.-..+.+|++|.||.+.                  
T Consensus        45 ~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~------------------  105 (236)
T 1tl2_A           45 FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS------------------  105 (236)
T ss_dssp             EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE------------------
T ss_pred             eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC------------------
Confidence            8999999999999 445699998 442 1100   011111122234688999999999983                  


Q ss_pred             CCCEEEEEeCCC--Ce-----EEEeeC-CCCCcceEEEecCCCEEEEEeCCCCeEEEEEec-CCC---CcceeeeeccCC
Q 022967          196 PHGKLLKYDPSL--NE-----TSILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-GES---KEQTEIFVENLP  263 (289)
Q Consensus       196 ~~g~i~~~~~~~--~~-----~~~~~~-~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~-~~~---~~~~~~~~~~~~  263 (289)
                       .|.|+|+++-+  +.     -+.+.. +...-.-|.++|+|. ||...  ..++++-... +..   +..........-
T Consensus       106 -dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~  181 (236)
T 1tl2_A          106 -KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW  181 (236)
T ss_dssp             -TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG
T ss_pred             -CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceeccCCc
Confidence             37899998732  11     122222 223336688999998 99887  4567663322 110   111111110000


Q ss_pred             CCCCceeeCCCCCEEEEEeCccc
Q 022967          264 GGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       264 ~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ..-.-+..+.+|+||.+. ++.+
T Consensus       182 ~~yr~l~f~~~G~l~~v~-~g~~  203 (236)
T 1tl2_A          182 DTFKFLFFSSVGTLFGVQ-GGKF  203 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TTEE
T ss_pred             ceEEEEEECCCCcEEEEe-CCeE
Confidence            011126688888888887 5443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.84  E-value=0.0027  Score=54.85  Aligned_cols=150  Identities=12%  Similarity=0.047  Sum_probs=88.1

Q ss_pred             CCcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeee--------------ecCcCccCeEEcC-CCcEEE-EeCCC
Q 022967           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKL--------------IGGDTLLGITTTQ-ENEILV-CDADK  137 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~--------------~~~~p~~gl~~d~-~g~l~v-~~~~~  137 (289)
                      ..-.++++.+ +|++. ++..+|.|..++ .++.......              ...... .+++.+ ++.+++ +....
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETTS
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCCC
Confidence            4456789988 88766 667889999998 3332111110              122334 788887 555544 44445


Q ss_pred             ceEEEe-CCC-eEEEEeccCCccccCccceEEcC---CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE
Q 022967          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT---DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (289)
Q Consensus       138 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~---dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  212 (289)
                      .+..++ .++ ...... ..    .....+.+.+   ++.+.++..                 ..+.|..+|.++++...
T Consensus       123 ~i~iwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN-FE----ETVYSHHMSPVSTKHCLVAVGT-----------------RGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEE-CS----SCEEEEEECSSCSSCCEEEEEE-----------------SSSSEEEEESSSSCCCE
T ss_pred             eEEEeeCCCCccceecc-CC----CceeeeEeecCCCCCcEEEEEc-----------------CCCeEEEEeCCCcceee
Confidence            577777 555 322221 11    1244566665   333444432                 23668888877554333


Q ss_pred             -eeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          213 -LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       213 -~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                       +.........++++|+++.++++....+.|..||+..
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence             3233344578999999997666556668899999854

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.82  E-value=0.0029  Score=59.68  Aligned_cols=171  Identities=5%  Similarity=-0.061  Sum_probs=92.1

Q ss_pred             CcceEEEccCCCEE-EEec---------CCeEEEEe-cCCceEEeeeecC---cCccCeEEcCCCc-EEEEeCCCceEEE
Q 022967           78 GPEDVCVDRNGVLY-TATR---------DGWIKRLH-KNGTWENWKLIGG---DTLLGITTTQENE-ILVCDADKGLLKV  142 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~---------~g~i~~~~-~~g~~~~~~~~~~---~p~~gl~~d~~g~-l~v~~~~~~i~~~  142 (289)
                      ...++++.|||+.. ++..         ++.|+.++ .+|+...+....+   ... .+++.+||+ |.++. ...|+.+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~-~~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIF-ENNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEE-CCeEEEE
Confidence            36789999999854 4433         26788888 4555544432222   245 788999996 44444 3678888


Q ss_pred             e-CCC-eEEEEeccCCcc--------------ccCccceEEcCCCc-EEEeeCC-CccCccc----------ccccc-c-
Q 022967          143 T-EEG-VTVLASHVNGSR--------------INLADDLIAATDGS-IYFSVAS-TKFGLHN----------WGLDL-L-  192 (289)
Q Consensus       143 ~-~~g-~~~~~~~~~~~~--------------~~~~~~l~~~~dG~-lyv~~~~-~~~~~~~----------~~~~~-~-  192 (289)
                      + .+| ...+........              +....+++++|||+ |+++... .......          ....+ + 
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            8 556 544433211100              11236799999996 5444311 0000000          00000 0 


Q ss_pred             ---eecCCCEEEEEeCCCCeE-EEeeCC------CCCcceEEEecCCCEEEEE-eCC--CCeEEEEEecCC
Q 022967          193 ---EAKPHGKLLKYDPSLNET-SILLDS------LFFANGVALSKDEDYLVVC-ETF--KFRCLKYWLKGE  250 (289)
Q Consensus       193 ---~~~~~g~i~~~~~~~~~~-~~~~~~------~~~p~gl~~~~d~~~l~v~-~~~--~~~i~~~~~~~~  250 (289)
                         .......|+.+|.++++. ..+...      ......++|+|||+.++.. +..  ...|+.+|+++.
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence               001123788889887763 333221      1223568999999966444 332  246788887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.81  E-value=0.0002  Score=67.85  Aligned_cols=130  Identities=8%  Similarity=-0.054  Sum_probs=82.3

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCc----CccCeEEcCCCcE-EEEeC---------CCceEEEe
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGD----TLLGITTTQENEI-LVCDA---------DKGLLKVT  143 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~----p~~gl~~d~~g~l-~v~~~---------~~~i~~~~  143 (289)
                      +.++.+.++|.++....++.|+.++ .+|+...+......    .. .+++.+||+. .++..         ...++.++
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            3467788888776666788999999 45565554432222    45 7899999974 33332         13467777


Q ss_pred             -CCC-e---EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC
Q 022967          144 -EEG-V---TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (289)
Q Consensus       144 -~~g-~---~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  217 (289)
                       .+| .   ..+    .    .....++++|||+ |.++.                   .+.|+.++.++++...+....
T Consensus        97 ~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           97 LSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             TTTTEECCSSCC----C----SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCC
T ss_pred             CCCCccccceec----C----cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCC
Confidence             555 3   222    1    2356789999995 55542                   246888888766654442111


Q ss_pred             -------------------CCcceEEEecCCCEEEEEe
Q 022967          218 -------------------FFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       218 -------------------~~p~gl~~~~d~~~l~v~~  236 (289)
                                         ....+++|+|||+.|+++.
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                               1124799999999887764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.80  E-value=0.0089  Score=51.52  Aligned_cols=149  Identities=10%  Similarity=0.011  Sum_probs=87.0

Q ss_pred             CCcceEEEcc-CCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcC---CCcEEE-EeCCCceEEEe-CCC--
Q 022967           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ---ENEILV-CDADKGLLKVT-EEG--  146 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~---~g~l~v-~~~~~~i~~~~-~~g--  146 (289)
                      ....++++.+ +++++ ++..+|.|..++ .+++............ .+.+.+   ++.+++ +.....+..++ .++  
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            3456688888 66554 666789999999 4454433333233334 666654   333444 44445677777 555  


Q ss_pred             eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEe----------
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSIL----------  213 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~----------  213 (289)
                      ...+...     ......+++.|++. ++++...                 .+.|..+|...+.  ...+          
T Consensus       179 ~~~~~~~-----~~~v~~~~~~~~~~~ll~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          179 SHILQGH-----RQEILAVSWSPRYDYILATASA-----------------DSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEECCC-----CSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             eeeecCC-----CCcEEEEEECCCCCcEEEEEcC-----------------CCcEEEEECCCCCccccccccccccccee
Confidence            4433211     12456889999986 5544322                 3567777765432  1111          


Q ss_pred             -----eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          214 -----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       214 -----~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                           .........++++|+++.|+.+. ..+.|..|++..
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~  276 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSN  276 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             eccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCC
Confidence                 11123346789999999777664 457788888764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.79  E-value=0.00079  Score=56.97  Aligned_cols=149  Identities=13%  Similarity=0.060  Sum_probs=88.3

Q ss_pred             CCcceEEEccCCCE-EEEecCCeEEEEe-cC---------CceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-C
Q 022967           77 NGPEDVCVDRNGVL-YTATRDGWIKRLH-KN---------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (289)
Q Consensus        77 ~~p~~l~~d~~g~l-~v~~~~g~i~~~~-~~---------g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~  144 (289)
                      ....++++.+ +++ +++..++.|..++ ..         ++..........+. .+++.+++ ++++.....+..++ .
T Consensus       102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~-l~~~~~d~~i~i~d~~  178 (342)
T 1yfq_A          102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF-TMDTNSSR-LIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE-EEEECSSE-EEEEESTTEEEEEESS
T ss_pred             CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE-EEEecCCc-EEEEeCCCeEEEEECC
Confidence            3456788888 554 4677889999998 22         22111111233445 88898776 77777656688888 5


Q ss_pred             C-C-e--EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-------eEEE
Q 022967          145 E-G-V--TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSI  212 (289)
Q Consensus       145 ~-g-~--~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-------~~~~  212 (289)
                      . + .  .......    ...+..+++.| +|.++++...                 .+.+..++.+.+       ....
T Consensus       179 ~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~-----------------dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          179 LCEDDNGTIEESGL----KYQIRDVALLPKEQEGYACSSI-----------------DGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             CCTTCCCEEEECSC----SSCEEEEEECSGGGCEEEEEET-----------------TSEEEEEECCTTCCSTTCTTCEE
T ss_pred             ccccccceeeecCC----CCceeEEEECCCCCCEEEEEec-----------------CCcEEEEEEcCCCccccccccee
Confidence            5 4 2  2221111    12467889999 8876665432                 244544443322       2222


Q ss_pred             eeCCC---------CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          213 LLDSL---------FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       213 ~~~~~---------~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      +....         .....++|+|+++.|+.+. ..+.|..||+...
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~  283 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTR  283 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTT
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccH
Confidence            32221         2567889999999776664 4578999997643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.78  E-value=0.011  Score=49.49  Aligned_cols=66  Identities=24%  Similarity=0.299  Sum_probs=40.1

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEec-CCc--eEE---eeeecCcCccCeEEcC--CCcEEEE-eCCCceEEEe
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGT--WEN---WKLIGGDTLLGITTTQ--ENEILVC-DADKGLLKVT  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~--~~~---~~~~~~~p~~gl~~d~--~g~l~v~-~~~~~i~~~~  143 (289)
                      ..-.++++.++|++. ++..+|.|..++. ++.  ...   +........ .+++.+  +++++++ .....+..++
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            456778999988755 6678899999983 221  111   122223344 889987  4765554 4334455565

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.77  E-value=0.0037  Score=58.91  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=89.2

Q ss_pred             cceEEEccCCCE-EEEecCCeEEEEecCCceEE-eeee----cCcCccCeEEcCCC--cEEE-EeCCCceEEEe-CCC-e
Q 022967           79 PEDVCVDRNGVL-YTATRDGWIKRLHKNGTWEN-WKLI----GGDTLLGITTTQEN--EILV-CDADKGLLKVT-EEG-V  147 (289)
Q Consensus        79 p~~l~~d~~g~l-~v~~~~g~i~~~~~~g~~~~-~~~~----~~~p~~gl~~d~~g--~l~v-~~~~~~i~~~~-~~g-~  147 (289)
                      ..++++.++|+. .++..++.|..++..+.... +...    ..... .+++.+++  .+++ +..+..|..+| .++ .
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS-CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE-EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence            455778887664 46667888888885443222 1111    11233 67888765  3344 44445577777 555 3


Q ss_pred             -EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          148 -TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       148 -~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                       ..+.. .    ......++++|+|++.++...                 .+.|..+|..+++.............++|+
T Consensus       554 ~~~~~~-h----~~~v~~v~~spdg~~l~sg~~-----------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  611 (694)
T 3dm0_A          554 RSTLAG-H----TGYVSTVAVSPDGSLCASGGK-----------------DGVVLLWDLAEGKKLYSLEANSVIHALCFS  611 (694)
T ss_dssp             EEEECC-C----SSCEEEEEECTTSSEEEEEET-----------------TSBCEEEETTTTEEEECCBCSSCEEEEEEC
T ss_pred             EEEEcC-C----CCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCceEEEecCCCcEEEEEEc
Confidence             33211 1    124678999999987776432                 366777887766644333333446778999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCC
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      |++..|..+.  .+.|..||+...
T Consensus       612 p~~~~l~~~~--~~~i~iwd~~~~  633 (694)
T 3dm0_A          612 PNRYWLCAAT--EHGIKIWDLESK  633 (694)
T ss_dssp             SSSSEEEEEE--TTEEEEEETTTT
T ss_pred             CCCcEEEEEc--CCCEEEEECCCC
Confidence            9998665553  467999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.74  E-value=0.00036  Score=60.46  Aligned_cols=156  Identities=14%  Similarity=0.065  Sum_probs=85.1

Q ss_pred             cceEEEccCCCE-EE-Eec--CCeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGVL-YT-ATR--DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l-~v-~~~--~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~  150 (289)
                      ...+++.|+|+. ++ ...  ...|+.++. .|+...+.........++.+.+||+ |+++.....++.++ ..+ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            455678888874 33 333  346888884 4555444333333331478889986 54555445699998 555 5444


Q ss_pred             EeccCCccccCcc--c----------------eEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          151 ASHVNGSRINLAD--D----------------LIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       151 ~~~~~~~~~~~~~--~----------------l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      .....+   ..+.  .                ..+.|||+ +.+..             .........|+.+|.++++..
T Consensus       118 ~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~-------------~~~~~~~~~l~~~d~~~g~~~  181 (396)
T 3c5m_A          118 YTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE-------------FYHTNPTCRLIKVDIETGELE  181 (396)
T ss_dssp             EECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH-------------HHHTCCCEEEEEEETTTCCEE
T ss_pred             Eecccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeee-------------eccCCCcceEEEEECCCCcEE
Confidence            331111   0000  0                11122221 11100             000023457999999888776


Q ss_pred             EeeCCCCCcceEEEec-CCCEEEEEeCC-C----CeEEEEEecCC
Q 022967          212 ILLDSLFFANGVALSK-DEDYLVVCETF-K----FRCLKYWLKGE  250 (289)
Q Consensus       212 ~~~~~~~~p~gl~~~~-d~~~l~v~~~~-~----~~i~~~~~~~~  250 (289)
                      .+.........++|+| |++.++++... .    .+|+.+++++.
T Consensus       182 ~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          182 VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            6655445567789999 78766555333 2    47999987654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.72  E-value=0.017  Score=49.19  Aligned_cols=175  Identities=10%  Similarity=0.027  Sum_probs=97.7

Q ss_pred             cceEEE-----cc-CCCEE-EEecCCeEEEEec-CCc-------eE-EeeeecCcCccCeEEcCCCcEEEEeCC-CceEE
Q 022967           79 PEDVCV-----DR-NGVLY-TATRDGWIKRLHK-NGT-------WE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLK  141 (289)
Q Consensus        79 p~~l~~-----d~-~g~l~-v~~~~g~i~~~~~-~g~-------~~-~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~  141 (289)
                      -.++++     .+ ++.+. .+..++.|..|+. +++       .. .+........ .+++.+++.+.++... ..+..
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D~~v~l  102 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWDKTLRL  102 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETTSEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCCCcEEE
Confidence            456676     44 67655 6668898988883 221       11 1111222334 8899998887665444 44666


Q ss_pred             Ee-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---C
Q 022967          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---D  215 (289)
Q Consensus       142 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~  215 (289)
                      ++ .++  +..+...     ......+++.|+|...++...                 .+.|..+|..+.......   .
T Consensus       103 wd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R          103 WDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGA-----------------EREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             EETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEET-----------------TSCEEEEESSSCEEEECCTTTS
T ss_pred             EECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcC-----------------CCEEEEEeccCCceeeeecccC
Confidence            67 556  4433221     124678999999986665432                 356777776533332222   1


Q ss_pred             CCCCcceEEEecCC----------CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          216 SLFFANGVALSKDE----------DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       216 ~~~~p~gl~~~~d~----------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      .......++++|++          . ++++-...+.|..||....   ....+. ........+++.++|.+.++.
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~---~~~~~~-~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTNFQ---IRYTFK-AHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETTTE---EEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCCCc---eeEEEc-CccccceEEEECCCCCEEEEE
Confidence            12234567888876          4 4444455688988883321   111121 222344567778888655544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.72  E-value=0.0028  Score=54.15  Aligned_cols=181  Identities=16%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeeec-CcCccCeEEcCCCcEEEEeCCCceEEEeCC-C--eEEEEec
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVTEE-G--VTVLASH  153 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~-g--~~~~~~~  153 (289)
                      +..|++..++++|+...+|.|++-...| .++...... .... ++++++++.+|++.....+++.... |  .+.+...
T Consensus       124 ~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~-~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~  202 (327)
T 2xbg_A          124 PRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMR-NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRT  202 (327)
T ss_dssp             EEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEE-EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECC
T ss_pred             eEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceE-EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCC
Confidence            3456666678888766677777765334 355443221 2334 7888888888887765667777643 5  5554221


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCC-CC---CcceEEEecC
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDS-LF---FANGVALSKD  228 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~-~~---~p~gl~~~~d  228 (289)
                          .......++++++|.+|+...                  .|.+++.+.+++ ..+.+... +.   ....+++.++
T Consensus       203 ----~~~~~~~~~~~~~g~~~~~~~------------------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~  260 (327)
T 2xbg_A          203 ----TSRRLHNMGFTPDGRLWMIVN------------------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP  260 (327)
T ss_dssp             ----SSSCEEEEEECTTSCEEEEET------------------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred             ----CCCccceeEECCCCCEEEEeC------------------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence                112456788899999998753                  256666544422 23322211 11   2245667766


Q ss_pred             CCEEEEEeCCCCeEEEEEecC-CCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          229 EDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      +. +|++.. ...|++- .++ .+...... ....+.....+.++.++.+|++...|.+
T Consensus       261 ~~-~~~~g~-~g~i~~S-~DgG~tW~~~~~-~~~~~~~~~~v~~~~~~~~~~~G~~G~i  315 (327)
T 2xbg_A          261 NE-VWLAGG-AGALLCS-QDGGQTWQQDVD-VKKVPSNFYKILFFSPDQGFILGQKGIL  315 (327)
T ss_dssp             SC-EEEEES-TTCEEEE-SSTTSSCEECGG-GTTSSSCCCEEEEEETTEEEEECSTTEE
T ss_pred             CE-EEEEeC-CCeEEEe-CCCCcccEEcCc-cCCCCCCeEEEEEECCCceEEEcCCceE
Confidence            66 777644 3456432 232 22211100 0011222345666556677777766654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.003  Score=60.36  Aligned_cols=184  Identities=16%  Similarity=0.123  Sum_probs=102.1

Q ss_pred             CcceEEEccCCCE-EEEecCCeEEEEec-CCceEE---eeeecCcCccCeEEcCC--CcEEEE-eCCCceEEEe-CCC-e
Q 022967           78 GPEDVCVDRNGVL-YTATRDGWIKRLHK-NGTWEN---WKLIGGDTLLGITTTQE--NEILVC-DADKGLLKVT-EEG-V  147 (289)
Q Consensus        78 ~p~~l~~d~~g~l-~v~~~~g~i~~~~~-~g~~~~---~~~~~~~p~~gl~~d~~--g~l~v~-~~~~~i~~~~-~~g-~  147 (289)
                      ...++++.++|.+ .++..+|.|..++. ++....   +....+... .+++.++  ++++++ ..+..|..++ .++ .
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~   89 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGRW   89 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            3456777787764 47778999999983 232222   222223334 8888765  765554 4434566666 555 3


Q ss_pred             EEEEeccCCccccCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe---EEEeeCCCCCcce
Q 022967          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANG  222 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~~~~~p~g  222 (289)
                      ..+... .+ .......+++.|+  |.++++...                 .+.|..+|..++.   ...+.........
T Consensus        90 ~~~~~~-~~-h~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           90 SQIAVH-AV-HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             cccccc-cC-CCCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            332221 11 1134678899998  876665432                 4678788876542   2222233344577


Q ss_pred             EEEec-------------CCCEEEEEeCCCCeEEEEEecCCCCc-ceeeeeccCCCCCCceeeCCC---CCEEEEEe
Q 022967          223 VALSK-------------DEDYLVVCETFKFRCLKYWLKGESKE-QTEIFVENLPGGPDNIKLAPD---GSFWIAIL  282 (289)
Q Consensus       223 l~~~~-------------d~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~---G~lwv~~~  282 (289)
                      ++++|             +++.++.+ ...+.|..||+...... ..........+....++..++   |.+.++..
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            88888             47755555 45688999998754221 111111122233455666766   55544443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.0079  Score=55.27  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=90.0

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCCceEEeeeecC-----cCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-e
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGG-----DTLLGITTTQENE-ILVCDADKGLLKVT-EEG-V  147 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~~~~~~~~~-----~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~  147 (289)
                      ....++++.|+|... +++.+|.|..++.++....+. ...     ... .++|.+||+ |+++..++.|..++ .++ .
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~-svafSPDG~~LAsgs~DGtVkIWd~~~~~l  163 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYH-CFEWNPIESSIVVGNEDGELQFFSIRKNSE  163 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEE-EEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEE-EEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence            446778999988855 777899999998555333332 111     244 799999997 55555445566666 444 3


Q ss_pred             --------EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE----EEeeC
Q 022967          148 --------TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET----SILLD  215 (289)
Q Consensus       148 --------~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~~  215 (289)
                              ..+.....+ .......+++.||| +..+..                  .+.+..++.+++..    ..+..
T Consensus       164 ~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-Laass~------------------D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          164 NTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-LVAALS------------------NNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             TCCCCEEEEEEECSCTT-CCCCEEEEEEETTE-EEEEET------------------TCCEEEECCCSSSSCCCEEEEEC
T ss_pred             ccccceeeeeeeccccc-ccccEEEEEEcCCc-EEEEeC------------------CCeEEEEECCCCccccceeeecc
Confidence                    112111122 12467799999999 444332                  24566677665552    12222


Q ss_pred             C-CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          216 S-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       216 ~-~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      + -.....++|+  ++.|..+ . .+.|..|++.+.
T Consensus       224 ~h~~~V~svaFs--g~~LASa-~-~~tIkLWd~~~~  255 (588)
T 2j04_A          224 ASRRKITDLKIV--DYKVVLT-C-PGYVHKIDLKNY  255 (588)
T ss_dssp             CCSSCCCCEEEE--TTEEEEE-C-SSEEEEEETTTT
T ss_pred             cccCcEEEEEEE--CCEEEEE-e-CCeEEEEECCCC
Confidence            2 2456788998  4655555 3 489999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.014  Score=49.43  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEec-CCceE--Eee-e--ecCcCccCeEEcCCCcEEEEeCC-CceEEEeC-CC---
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWE--NWK-L--IGGDTLLGITTTQENEILVCDAD-KGLLKVTE-EG---  146 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~~--~~~-~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~-~g---  146 (289)
                      .-.+++++++ .|.++..++.|..++. .+...  ... .  ...... .+++.+++.++++... ..+..++. .+   
T Consensus        16 ~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           16 KIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             CEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             ceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            3456777766 5557778899999983 33222  111 1  122334 8999999987665433 44555552 11   


Q ss_pred             ---eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC-CC---eE-EEeeCCCC
Q 022967          147 ---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN---ET-SILLDSLF  218 (289)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~---~~-~~~~~~~~  218 (289)
                         .+.+. ...+. ......+++.|+|.+.++...                 .+.|..+|.+ .+   +. ..+.....
T Consensus        94 ~~~~~~~~-~~~~h-~~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           94 TFEMDLLA-IIEGH-ENEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             -CCCEEEE-EEC-----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             cccceeEE-EEcCC-CCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEeccCCCCCeEEEEEeccCCC
Confidence               11111 11111 124678999999987666432                 3556666663 22   22 22223334


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       219 ~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ....++|+|+++.|..+ ...+.|..|+...
T Consensus       155 ~v~~v~~~p~~~~l~s~-s~D~~i~iW~~~~  184 (330)
T 2hes_X          155 DVKHVIWHPSEALLASS-SYDDTVRIWKDYD  184 (330)
T ss_dssp             CEEEEEECSSSSEEEEE-ETTSCEEEEEEET
T ss_pred             ceEEEEECCCCCEEEEE-cCCCeEEEEECCC
Confidence            45788999999855544 5567888888754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.68  E-value=0.015  Score=48.86  Aligned_cols=183  Identities=12%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEecCC-ceEEeee-ecCcCccCeEEcCCCcEEEE-eCCCceEEEeCCC-eEEEE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKL-IGGDTLLGITTTQENEILVC-DADKGLLKVTEEG-VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g-~~~~~~~-~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~~~g-~~~~~  151 (289)
                      ....++++.++|++. ++..++.|..++... ....... ...... .+.+.+++..+++ .....+..++..+ .....
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            345678899988866 666888888888433 2222222 222233 5556666665444 4334455556333 22211


Q ss_pred             eccCCccccCccceEEcCCC--cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecC
Q 022967          152 SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG--~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d  228 (289)
                      .. .+ .......+++.+++  .++++..                 ..+.|..+|..+++......+ ......++|+|+
T Consensus       166 ~~-~~-~~~~v~~~~~~~~~~~~~~~s~~-----------------~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          166 QD-ES-HSEWVSCVRFSPNSSNPIIVSCG-----------------WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             CS-SS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             Ee-cc-ccCcccceEEccCCCCcEEEEEc-----------------CCCEEEEEECCCCceeeEecCCCCcEEEEEECCC
Confidence            11 11 11234456666654  3444432                 235677788877665544333 334577899999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ++.|+.+ ...+.|..||+.....  ...+.  .......+...+++.+..+..++
T Consensus       227 ~~~l~s~-s~Dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          227 GSLCASG-GKDGQAMLWDLNEGKH--LYTLD--GGDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             SSEEEEE-ETTCEEEEEETTTTEE--EEEEE--CSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEEEE-eCCCeEEEEEeccCce--eeeec--CCceEEeeecCCCCceeeccCCC
Confidence            9966655 4568899998764321  11111  11223345555555555555443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.66  E-value=0.0019  Score=64.00  Aligned_cols=170  Identities=9%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             eEEEccCCCEEEEecCCeEEEEecCC-ceEEeee-----------ecCcCccCeEEc-CCCc-EEEEeCCCceEEEe-CC
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL-----------IGGDTLLGITTT-QENE-ILVCDADKGLLKVT-EE  145 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~-----------~~~~p~~gl~~d-~~g~-l~v~~~~~~i~~~~-~~  145 (289)
                      .+++.++|+..+...++.|+.++.++ .+..+..           ...... .+++. +||+ |.++. ...++.++ .+
T Consensus       249 ~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~-~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          249 PRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF-AEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG-EEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             eeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc-eeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence            45777777744333577888887422 3332211           111345 88999 9986 44444 45688888 45


Q ss_pred             C-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEE-EEeCCCCeEEEeeCCCCCcce
Q 022967          146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLL-KYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~-~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      + ...+.. ..   ......+++. ||. |+++..                  ...++ .++.++++...+.........
T Consensus       327 ~~~~~~~~-~~---~~~~~~~~~s-dg~~l~~~s~------------------~~~l~~~~d~~~~~~~~l~~~~~~~~~  383 (1045)
T 1k32_A          327 TYVLKVPE-PL---RIRYVRRGGD-TKVAFIHGTR------------------EGDFLGIYDYRTGKAEKFEENLGNVFA  383 (1045)
T ss_dssp             SBEEECSC-CS---CEEEEEECSS-SEEEEEEEET------------------TEEEEEEEETTTCCEEECCCCCCSEEE
T ss_pred             CceEEccC-CC---cceEEeeeEc-CCCeEEEEEC------------------CCceEEEEECCCCCceEecCCccceee
Confidence            5 433211 11   1134566777 774 444321                  25788 889887776665533455678


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  279 (289)
                      ++|+|||++|+++.. .+.|+.+|+++....   .......+....++..+||+..+
T Consensus       384 ~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~---~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          384 MGVDRNGKFAVVAND-RFEIMTVDLETGKPT---VIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             EEECTTSSEEEEEET-TSEEEEEETTTCCEE---EEEECSSSCCCCEEECTTSCEEE
T ss_pred             eEECCCCCEEEEECC-CCeEEEEECCCCceE---EeccCCCCCccceEECCCCCeEE
Confidence            999999998887754 478999998754321   22212223346678888886443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.63  E-value=0.00037  Score=64.37  Aligned_cols=74  Identities=18%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEecCCCEEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVV  234 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~d~~~l~v  234 (289)
                      ..+..|..|+++++|+|||+.....-.     ...+....+..++.+++.++++..++.+-  .-..|++|+||+++|||
T Consensus       473 ~~f~~PDNL~fd~~G~LwI~eDg~~~~-----~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv  547 (592)
T 3zwu_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSN-----AGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV  547 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCC-----SGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred             CCccCCcceEECCCCCEEEEecCCCcc-----cccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence            356789999999999999987542100     01111224567899999989888876542  23478999999999998


Q ss_pred             E
Q 022967          235 C  235 (289)
Q Consensus       235 ~  235 (289)
                      .
T Consensus       548 n  548 (592)
T 3zwu_A          548 G  548 (592)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.62  E-value=0.0096  Score=52.76  Aligned_cols=172  Identities=12%  Similarity=0.050  Sum_probs=95.8

Q ss_pred             EccCCC-EEEEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEeccCC
Q 022967           84 VDRNGV-LYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHVNG  156 (289)
Q Consensus        84 ~d~~g~-l~v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~~~~  156 (289)
                      +.++++ ++++..++.|..++ .+++... +........ .++++++++.+++ ..+..|..++ .++  +..+...   
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---  351 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH---  351 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---
Confidence            344455 45777889999999 4454332 222233344 8899988875555 4435577777 566  3333211   


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~  236 (289)
                        ......+.++  +...++..                 ..+.|..+|..++..............++++++++.+..+.
T Consensus       352 --~~~v~~~~~~--~~~l~s~s-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          352 --TALVGLLRLS--DKFLVSAA-----------------ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             --SSCEEEEEEC--SSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             --CCcEEEEEEc--CCEEEEEe-----------------CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence              1234566665  44444332                 24678888887655443333334456678999999666664


Q ss_pred             CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          237 TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                        .+.|..||+...+...  .+..........++.+ +..+.++....+
T Consensus       411 --dg~i~iwd~~~g~~~~--~~~~~~~~~v~~v~~~-~~~l~~~~~~~g  454 (464)
T 3v7d_B          411 --ENQFNIYNLRSGKLVH--ANILKDADQIWSVNFK-GKTLVAAVEKDG  454 (464)
T ss_dssp             --TTEEEEEETTTCCEEE--SCTTTTCSEEEEEEEE-TTEEEEEEEETT
T ss_pred             --CCeEEEEECCCCcEEe--hhhccCCCcEEEEEec-CCEEEEEEEeCC
Confidence              5799999986543211  1111112233446665 345555544433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.60  E-value=0.015  Score=48.39  Aligned_cols=149  Identities=11%  Similarity=0.114  Sum_probs=79.1

Q ss_pred             cceEEEcc--CCCEE-EEecCCeEEEEe-cCCceE---EeeeecCcCccCeEEcCC--CcEEEE-eCCCceEEEe-CCC-
Q 022967           79 PEDVCVDR--NGVLY-TATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQE--NEILVC-DADKGLLKVT-EEG-  146 (289)
Q Consensus        79 p~~l~~d~--~g~l~-v~~~~g~i~~~~-~~g~~~---~~~~~~~~p~~gl~~d~~--g~l~v~-~~~~~i~~~~-~~g-  146 (289)
                      -.++++.+  +|++. .+..++.|..++ .+++..   .+........ .+++.++  |.++++ ..+..+..++ .++ 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            35677754  36655 667889999998 444322   2222223344 7888876  655544 4434455555 332 


Q ss_pred             -eE-EEEeccCCccccCccceEEcCC-------------CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--
Q 022967          147 -VT-VLASHVNGSRINLADDLIAATD-------------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--  209 (289)
Q Consensus       147 -~~-~~~~~~~~~~~~~~~~l~~~~d-------------G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--  209 (289)
                       .. ......    ......+++.|+             ++++++..                 ..+.|..+|.++++  
T Consensus       135 ~~~~~~~~~h----~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-----------------~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          135 TTSPIIIDAH----AIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             CBCCEEEECC----SSCEEEEEECCCC------------CCEEEEEE-----------------TTSCEEEEEEETTTTE
T ss_pred             ceeeeeeecc----cCccceEeecCCcccccccCCCCCCcceEEEEc-----------------CCCcEEEEEEcCCCce
Confidence             21 111111    123456777775             33444322                 12444444433322  


Q ss_pred             --EE-EeeCCCCCcceEEEecCC--CEEEEEeCCCCeEEEEEecC
Q 022967          210 --TS-ILLDSLFFANGVALSKDE--DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       210 --~~-~~~~~~~~p~gl~~~~d~--~~l~v~~~~~~~i~~~~~~~  249 (289)
                        .. .+.........++|+|++  ..++++-...+.|..|+++.
T Consensus       194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence              11 222233445789999986  34566666678899999865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.59  E-value=0.027  Score=47.97  Aligned_cols=182  Identities=14%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEecCC-ceEEeeeec---CcCccCeEEcCCCcEEEEeCCCceEEEeCCC--eEEEE
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIG---GDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~g-~~~~~~~~~---~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g--~~~~~  151 (289)
                      ...+|++..++.+|+....|.|++-...| .++......   ..+..+|++++ +++|++.....+++-.+.|  .+.+.
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~  115 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIP  115 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECC
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECc
Confidence            45667777678888755667776654334 344432211   22222788875 6888876444566654445  44432


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-CCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~p~gl~~~~d~~  230 (289)
                      .... .+ ..+..|++.+++++|+...                  .+.|++-+-.+...+.+.... ....++++++++.
T Consensus       116 ~~~~-~~-~~~~~i~~~~~~~~~~~~~------------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~  175 (327)
T 2xbg_A          116 LDPK-LP-GSPRLIKALGNGSAEMITN------------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE  175 (327)
T ss_dssp             CCTT-CS-SCEEEEEEEETTEEEEEET------------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC
T ss_pred             cccC-CC-CCeEEEEEECCCCEEEEeC------------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc
Confidence            2100 00 1245677777888887643                  256777643344555554322 2345678888877


Q ss_pred             EEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          231 YLVVCETFKFRCLKYWLK-GESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                       +|+... ...+++-+-. +.....   ...........++++.+|.+|++...|.
T Consensus       176 -~~~~g~-~G~~~~S~d~gG~tW~~---~~~~~~~~~~~~~~~~~g~~~~~~~~G~  226 (327)
T 2xbg_A          176 -YVAVSS-RGSFYSTWEPGQTAWEP---HNRTTSRRLHNMGFTPDGRLWMIVNGGK  226 (327)
T ss_dssp             -EEEEET-TSSEEEEECTTCSSCEE---EECCSSSCEEEEEECTTSCEEEEETTTE
T ss_pred             -EEEEEC-CCcEEEEeCCCCCceeE---CCCCCCCccceeEECCCCCEEEEeCCce
Confidence             554433 3556665422 222221   1111122334577788888888876544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.58  E-value=0.00012  Score=64.00  Aligned_cols=142  Identities=18%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             EEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC-eEEEEeccCCcc
Q 022967           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG-VTVLASHVNGSR  158 (289)
Q Consensus        83 ~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g-~~~~~~~~~~~~  158 (289)
                      +++ ++.||+++.+|.|+.+| .+|+....... +... ...+..+|.+|++. ....++.+| .+| ....... ....
T Consensus         6 ~v~-~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~~~   81 (369)
T 2hz6_A            6 TLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF-TIPE   81 (369)
T ss_dssp             --C-TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSC-CHHH
T ss_pred             eee-CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec-cCcc
Confidence            454 67899999999999999 67876533332 3333 33333467777764 345688888 567 3221110 0000


Q ss_pred             ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC
Q 022967          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF  238 (289)
Q Consensus       159 ~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~  238 (289)
                      .. ....++..++.+|++..                  .+.|+.+|+++|+..-....   .....++|+++.+|++.. 
T Consensus        82 ~~-~~sp~~~~~~~v~~g~~------------------dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-  138 (369)
T 2hz6_A           82 LV-QASPCRSSDGILYMGKK------------------QDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-  138 (369)
T ss_dssp             HH-TTCSCC-----CCCCEE------------------EEEEEEECCC-------------------------EEEEEE-
T ss_pred             cc-ccCceEecCCEEEEEeC------------------CCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-
Confidence            00 01112223567776532                  36799999987765322111   112344567777888743 


Q ss_pred             CCeEEEEEecCCC
Q 022967          239 KFRCLKYWLKGES  251 (289)
Q Consensus       239 ~~~i~~~~~~~~~  251 (289)
                      .+.|+.+|..+.+
T Consensus       139 dg~v~a~d~~tG~  151 (369)
T 2hz6_A          139 EYTITMYDTKTRE  151 (369)
T ss_dssp             EEEEECCCSSSSS
T ss_pred             CCEEEEEECCCCC
Confidence            4678888875433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.56  E-value=0.004  Score=52.74  Aligned_cols=132  Identities=8%  Similarity=0.009  Sum_probs=83.7

Q ss_pred             CCCEEEEe----cCCeEEEEecCCc-eEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC--eEEEEeccCCcc
Q 022967           87 NGVLYTAT----RDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--VTVLASHVNGSR  158 (289)
Q Consensus        87 ~g~l~v~~----~~g~i~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g--~~~~~~~~~~~~  158 (289)
                      ++.||..+    .+..|++++.+|+ .+.+.....  . .+.++ .+.||+++.+ ..|++++.+|  .+.+..   +  
T Consensus       115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~-~~~~~-g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~--  185 (302)
T 3s25_A          115 GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--F-TCNTS-DRYFYYNNPKNGQLYRYDTASQSEALFYD---C--  185 (302)
T ss_dssp             TTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--C-CSEEE-TTEEEEECTTTCCEEEEETTTTEEEEEEC---S--
T ss_pred             CCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--e-EeeEE-CCEEEEEeCCCceEEEEECCCCCEEEEeC---C--
Confidence            55777544    4568999997774 333333222  2 33333 3468888763 5699999555  454432   1  


Q ss_pred             ccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEE-e
Q 022967          159 INLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC-E  236 (289)
Q Consensus       159 ~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~-~  236 (289)
                         .....+.|+ +.||+++..                ....|++.+.+++..+++.....    ..+++++++||++ +
T Consensus       186 ---~~~~~~~P~g~~iy~t~~~----------------~~~~I~~~~ldG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~  242 (302)
T 3s25_A          186 ---NCYKPVVLDDTNVYYMDVN----------------RDNAIVHVNINNPNPVVLTEANI----EHYNVYGSLIFYQRG  242 (302)
T ss_dssp             ---CEEEEEEEETTEEEEEEGG----------------GTTEEEEECSSSCCCEECSCSCE----EEEEEETTEEEEEEC
T ss_pred             ---CccceeeecCCEEEEEEcC----------------CCcEEEEEECCCCCeEEEeCCCc----ceEEECCCEEEEEEC
Confidence               112345565 579998742                12579999999877666643221    2478889999997 5


Q ss_pred             CCCCeEEEEEecCC
Q 022967          237 TFKFRCLKYWLKGE  250 (289)
Q Consensus       237 ~~~~~i~~~~~~~~  250 (289)
                      .....|++.+++|.
T Consensus       243 ~~~~~i~~~~~DG~  256 (302)
T 3s25_A          243 GDNPALCVVKNDGT  256 (302)
T ss_dssp             SSSCEEEEEETTSC
T ss_pred             CCCcEEEEEECCCC
Confidence            55688999999885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.56  E-value=0.0039  Score=52.94  Aligned_cols=146  Identities=8%  Similarity=0.011  Sum_probs=84.5

Q ss_pred             CcceEEEccCCC-EEEEe-cC--C--eEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeC--------------
Q 022967           78 GPEDVCVDRNGV-LYTAT-RD--G--WIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDA--------------  135 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~-~~--g--~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~--------------  135 (289)
                      ....+++.|+|+ |++.. ..  +  .|+.++. .|+...+..... .. .+++.+||+ |+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            355678999886 44333 22  3  4888884 455544443333 55 889988886 555531              


Q ss_pred             -------------CCceEEEe-CCC-e-EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCE
Q 022967          136 -------------DKGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (289)
Q Consensus       136 -------------~~~i~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~  199 (289)
                                   ...|+.++ .+| . +.+..     +  ....+.+.||| ++++.....        ..........
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~--------~~~~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHRE--------IIPQYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCC--------SSCCSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEeccc--------cccccccccc
Confidence                         13478888 556 5 55533     1  35678999999 766542200        0000001347


Q ss_pred             EEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC-------CCeEEEEE
Q 022967          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-------KFRCLKYW  246 (289)
Q Consensus       200 i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~-------~~~i~~~~  246 (289)
                      |+.+|  +++...+... .. . ..++|||++|++....       ...|+.++
T Consensus       202 l~~~d--~~~~~~l~~~-~~-~-~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-VS-F-YAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-ES-E-EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EEEeC--CCceEEeccC-cc-e-eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            89998  5666655443 22 2 2348999988766532       35788887

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0093  Score=58.21  Aligned_cols=151  Identities=7%  Similarity=-0.018  Sum_probs=91.6

Q ss_pred             CcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC-eEEEEe
Q 022967           78 GPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        78 ~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      .-.++++.+ |+ |..+..++.|..|+ .+++........+... .++++++++..+ +.....|..+| ..+ ...+..
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            346788888 66 66777899999999 4555332222233445 899999987544 45445577777 555 432211


Q ss_pred             -------ccCCccccCccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC-------
Q 022967          153 -------HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-------  217 (289)
Q Consensus       153 -------~~~~~~~~~~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-------  217 (289)
                             .........+.++++.|++ .+.++..                 ..+.| .+|.++++........       
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-----------------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~  199 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-----------------EYVTL-TYSLVENEIKQSFIYELPPFAPG  199 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-----------------SSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEe-----------------CCCcE-EEECCCCceEEEEecccCCcCCC
Confidence                   0001112356789999964 4433322                 23667 8888766644332211       


Q ss_pred             ------------CCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          218 ------------FFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       218 ------------~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                                  .....++|+||+++|..+ ...+.|..||+..
T Consensus       200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~~~  242 (902)
T 2oaj_A          200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDANS  242 (902)
T ss_dssp             STTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEETTT
T ss_pred             cccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC
Confidence                        235788999999955555 5568899999754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0072  Score=57.70  Aligned_cols=182  Identities=13%  Similarity=0.139  Sum_probs=97.2

Q ss_pred             CcceEEEccC--CCEE-EEecCCeEEEEe-cCCceEEee---eecCcCccCeEEcCC--CcEEEE-eCCCceEEEe-CCC
Q 022967           78 GPEDVCVDRN--GVLY-TATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQE--NEILVC-DADKGLLKVT-EEG  146 (289)
Q Consensus        78 ~p~~l~~d~~--g~l~-v~~~~g~i~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~--g~l~v~-~~~~~i~~~~-~~g  146 (289)
                      .-.++++.++  |++. ++..+|.|..++ .+++.....   ....... .+++.++  |.++++ .....+..++ ..+
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            3456788765  6655 677889999998 455422221   2223344 8899887  765554 4434466666 333


Q ss_pred             --eEEEEeccCCccccCccceEEcC-------------CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC---
Q 022967          147 --VTVLASHVNGSRINLADDLIAAT-------------DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN---  208 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~-------------dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~---  208 (289)
                        .........   ......+++.|             +|.+.++...                 .+.|..+|..++   
T Consensus       134 ~~~~~~~~~~~---~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----------------dg~I~iwd~~~~~~~  193 (753)
T 3jro_A          134 GTTSPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQT  193 (753)
T ss_dssp             SCCCCEEEECC---SSCEEEEEECCCC---------CGGGCCEEEEET-----------------TSCEEEEEEETTTTE
T ss_pred             CCcceeEeecC---CCceEEEEecCcccccccccccCCCCCEEEEEEC-----------------CCeEEEEeccCCccc
Confidence              211111100   12456777777             4554444321                 355656654433   


Q ss_pred             -eEEE-eeCCCCCcceEEEecC---CCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCCCCCCceeeCCCCCEEEEE
Q 022967          209 -ETSI-LLDSLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFV--ENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       209 -~~~~-~~~~~~~p~gl~~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                       .... +.........++|+|+   ++.++.+ ...+.|..||+............  ....+....++...+|.+.++.
T Consensus       194 ~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASV-SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             ceeeeeecCCCCcEEEEEeccCCCCCCEEEEE-ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence             1111 2222344578999999   6655444 55688999998754211111111  1122345567888888654443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.50  E-value=0.03  Score=46.53  Aligned_cols=152  Identities=16%  Similarity=0.092  Sum_probs=84.8

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEecCC---c-eEEeeeecCcCccCeEEcC--CCcEEEEe-CCCceEEEe-CCC-e
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG---T-WENWKLIGGDTLLGITTTQ--ENEILVCD-ADKGLLKVT-EEG-V  147 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~~g---~-~~~~~~~~~~p~~gl~~d~--~g~l~v~~-~~~~i~~~~-~~g-~  147 (289)
                      .-.+++++++|+.. ++..++.|..++.++   + ...+....+... .++|.+  +|+++++. .+..+..++ .++ .
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence            34578899988766 666889899998432   2 222322233344 788854  36666554 334455566 444 2


Q ss_pred             EEEEeccCCccccCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe---EEEeeCCCCCcce
Q 022967          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANG  222 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~~~~~p~g  222 (289)
                      ..+.. ..+ .......+++.|+  |.+.++...                 .+.|..+|.+++.   ...+.......+.
T Consensus        90 ~~~~~-~~~-h~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           90 SQIAV-HAV-HSASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             CCCEE-ECC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             EEEEE-eec-CCCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEecCCCceeeeeeecccCccce
Confidence            21111 011 0124678899886  765554322                 3566666655332   1222222334567


Q ss_pred             EEEecC-------------CCEEEEEeCCCCeEEEEEecCC
Q 022967          223 VALSKD-------------EDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       223 l~~~~d-------------~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ++|+|+             ++ ++++-...+.|..||+...
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             EEECCCC------------CC-EEEEEETTSCEEEEEEETT
T ss_pred             EeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCC
Confidence            788886             34 4455455688999988653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.50  E-value=0.014  Score=50.26  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=82.0

Q ss_pred             EEEec---CCeEEEEec---CCceEEeee------e-cCcCccCeEE--cC-CCc--EEEEeCCCceEE--Ee--CCC-e
Q 022967           91 YTATR---DGWIKRLHK---NGTWENWKL------I-GGDTLLGITT--TQ-ENE--ILVCDADKGLLK--VT--EEG-V  147 (289)
Q Consensus        91 ~v~~~---~g~i~~~~~---~g~~~~~~~------~-~~~p~~gl~~--d~-~g~--l~v~~~~~~i~~--~~--~~g-~  147 (289)
                      |+++.   +++|..++.   ++.+..+..      . ...|. |+++  ++ .|.  +||.+....+..  +.  .+| +
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~py-Glcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVY-GFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCC-CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCee-EEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            45554   477777742   345555422      1 15688 9998  65 354  566655443433  43  344 2


Q ss_pred             -EEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCC--C---CeEEEee--CCC-
Q 022967          148 -TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--L---NETSILL--DSL-  217 (289)
Q Consensus       148 -~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~---~~~~~~~--~~~-  217 (289)
                       ..++..+...  ..+.++++|+ .|.||+++..                  .+||+|+.+  +   ++.....  ..+ 
T Consensus       169 ~~~lVR~f~lg--sq~EgcvvDd~~g~Lyv~eEd------------------~GIw~~da~p~~~~~~~~v~~~~~g~l~  228 (355)
T 3amr_A          169 SGKKVRAFKMN--SQTEGMAADDEYGRLYIAEED------------------EAIWKFSAEPDGGSNGTVIDRADGRHLT  228 (355)
T ss_dssp             EEEEEEEEECS--SCEEEEEEETTTTEEEEEETT------------------TEEEEEECSTTSCSCCEEEEEBSSSSBC
T ss_pred             cceEEEEecCC--CCcceEEEcCCCCeEEEeccc------------------ceEEEEeCCcCCCCCceEEEEecCCccc
Confidence             2222222111  2577899997 5799999753                  459999944  3   2222222  222 


Q ss_pred             CCcceEEEe--cCCC-EEEEEeCCCCeEEEEEec
Q 022967          218 FFANGVALS--KDED-YLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       218 ~~p~gl~~~--~d~~-~l~v~~~~~~~i~~~~~~  248 (289)
                      ..+.||++.  ++++ +|++++.+++.+.+|+..
T Consensus       229 aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          229 RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            367899985  4555 899999898999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.47  E-value=0.033  Score=49.22  Aligned_cols=173  Identities=10%  Similarity=0.034  Sum_probs=92.2

Q ss_pred             eEEEccCCCEEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccC
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN  155 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~  155 (289)
                      ++.++ ++.|+++..+|.|..++ .+++...... ..+... .+++.+++.++.+..+..+..++ .++  ...+.. ..
T Consensus       127 ~~~~~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~  203 (464)
T 3v7d_B          127 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HN  203 (464)
T ss_dssp             EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CS
T ss_pred             EEEEC-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CC
Confidence            45554 34566778899999999 5565433222 233344 88898877565566556677777 666  333321 11


Q ss_pred             CccccCccceEEc--CCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE----------------------
Q 022967          156 GSRINLADDLIAA--TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----------------------  211 (289)
Q Consensus       156 ~~~~~~~~~l~~~--~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~----------------------  211 (289)
                          .....+++.  +++.+.++...                 .+.|..+|..++...                      
T Consensus       204 ----~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          204 ----STVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             ----SCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             ----CccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence                234556666  46654444322                 245555555433211                      


Q ss_pred             -EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          212 -ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       212 -~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                       ....+.. ..-.+++++++.++.+. ..+.|..||+.....  ...+. ........++.+.+|++.++..
T Consensus       263 ~~~~~~~~-~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          263 VGVLRGHM-ASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMKC--LYILS-GHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EEEECCCS-SCEEEEEEETTEEEEEE-TTSCEEEEETTTTEE--EEEEC-CCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEccCcc-ceEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE--EEEec-CCCCCEEEEEEcCCCCEEEEEe
Confidence             1111111 11235577888666664 457899998764321  11121 2223345577777776555443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.45  E-value=0.044  Score=46.96  Aligned_cols=201  Identities=8%  Similarity=-0.023  Sum_probs=97.2

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEE-EEeCC-CceEEEe-CCC--eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEIL-VCDAD-KGLLKVT-EEG--VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~-v~~~~-~~i~~~~-~~g--~~~~~  151 (289)
                      ..-.++++.++|.+.+...++.+..++.+.............. .+++..++++. ++..+ ..+..+| .++  +..+.
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE
Confidence            3457899999999875544455777773322111111112222 35555555543 44333 3566667 556  33322


Q ss_pred             eccCCcc---ccCccceEEcCCCcEEEeeCCCc-cCcccc-----------ccccce-ecCCCEEEEEeCCCCe------
Q 022967          152 SHVNGSR---INLADDLIAATDGSIYFSVASTK-FGLHNW-----------GLDLLE-AKPHGKLLKYDPSLNE------  209 (289)
Q Consensus       152 ~~~~~~~---~~~~~~l~~~~dG~lyv~~~~~~-~~~~~~-----------~~~~~~-~~~~g~i~~~~~~~~~------  209 (289)
                      .  ...-   ...+..+.+..++.+++-+.... -.....           ....+. +...|.|..+|..+++      
T Consensus        99 ~--~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~  176 (355)
T 3vu4_A           99 V--DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQD  176 (355)
T ss_dssp             C--SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC--------
T ss_pred             C--CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence            1  1100   00122333334455554433211 000000           000011 3445677777876543      


Q ss_pred             -----------EEEeeCCCCCcceEEEecCCCEEEEEeCCCCe-EEEEEecCCCCcceeeeecc-CCCCCCceeeCCCCC
Q 022967          210 -----------TSILLDSLFFANGVALSKDEDYLVVCETFKFR-CLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGS  276 (289)
Q Consensus       210 -----------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~-i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~  276 (289)
                                 ...+.........++|+||++.|..+ ...+. |..||+.....  ...+... .......+++.++|+
T Consensus       177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~-s~d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~  253 (355)
T 3vu4_A          177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC-SQDGTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGS  253 (355)
T ss_dssp             ----------CCEEECCCSSCEEEEEECTTSSEEEEE-ETTCSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSC
T ss_pred             ccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-eCCCCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCC
Confidence                       33333334445789999999955555 45576 88898764322  1222211 223456688888887


Q ss_pred             EEEEEeC
Q 022967          277 FWIAILQ  283 (289)
Q Consensus       277 lwv~~~~  283 (289)
                      +.++...
T Consensus       254 ~l~s~s~  260 (355)
T 3vu4_A          254 KLAVVSD  260 (355)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            6665543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.45  E-value=0.0023  Score=59.10  Aligned_cols=124  Identities=14%  Similarity=0.232  Sum_probs=74.5

Q ss_pred             cccCccceEEcC-CCcEEEeeCCCccCccc----cccccceecCCCEEEEEeCCCCe-------EEEee-----------
Q 022967          158 RINLADDLIAAT-DGSIYFSVASTKFGLHN----WGLDLLEAKPHGKLLKYDPSLNE-------TSILL-----------  214 (289)
Q Consensus       158 ~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~----~~~~~~~~~~~g~i~~~~~~~~~-------~~~~~-----------  214 (289)
                      ++..+.++.++| +|.+||+.........+    ........+..|.|++++++++.       .+.+.           
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            456788999997 78999987642111000    00111223456899999875331       22221           


Q ss_pred             -----------CCCCCcceEEEecCCCEEEEEeCC------------CCeEEEEEecCCCCcceeeeecc-CCCCCCcee
Q 022967          215 -----------DSLFFANGVALSKDEDYLVVCETF------------KFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIK  270 (289)
Q Consensus       215 -----------~~~~~p~gl~~~~d~~~l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~-~~~~p~~i~  270 (289)
                                 ..+.+|..|+|+++|+ |||++.+            ++.++.++...   +....|... ......|++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~-LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~---g~~~rf~~~P~gaE~TG~~  537 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPAT---GEIRRFMVGPIGCEVTGIS  537 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTTCSCEEEEECTTT---CCEEEEEECCTTCEEEEEE
T ss_pred             ccccccccCCCCCccCCcceEECCCCC-EEEEecCCCcccccccccccceEEEEeCCC---CeEEEEEeCCCCccCcCee
Confidence                       1256789999999998 8888764            34566665432   333444422 224556788


Q ss_pred             eCCCC-CEEEEEeCcc
Q 022967          271 LAPDG-SFWIAILQVF  285 (289)
Q Consensus       271 ~d~~G-~lwv~~~~g~  285 (289)
                      +.+|| +|||.....|
T Consensus       538 fspDg~tlfvniQHPG  553 (592)
T 3zwu_A          538 FSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             ECTTSSEEEEEEESTT
T ss_pred             ECCCCCEEEEEEECCC
Confidence            88887 6888876544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.45  E-value=0.0067  Score=53.63  Aligned_cols=184  Identities=10%  Similarity=0.037  Sum_probs=93.2

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEecCCce-EEeeeecCcCccCeEEcCCCc-EEEE-eCCCceEEEe-CCC--eEEEEe
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVC-DADKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-l~v~-~~~~~i~~~~-~~g--~~~~~~  152 (289)
                      .+++++++|.+. ++..+|.|..++.+++. ..+........ .+++.+++. ++++ ..+..|..+| ..+  ...+..
T Consensus       213 ~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~  291 (435)
T 4e54_B          213 CSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVT-HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY  291 (435)
T ss_dssp             CCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEE-EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred             EEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEE-eeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence            457777877765 66678888888865542 22222223344 889988775 5544 3334455556 332  211111


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-------CCCcceEEE
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------LFFANGVAL  225 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-------~~~p~gl~~  225 (289)
                      . . .-......++++|||...++...                 .+.|..+|..+++.......       ...+....+
T Consensus       292 ~-~-~h~~~v~~~~~spdg~~l~s~~~-----------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (435)
T 4e54_B          292 S-L-PHRHPVNAACFSPDGARLLTTDQ-----------------KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW  352 (435)
T ss_dssp             C-C-BCSSCEEECCBCTTSSEEEEEES-----------------SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred             e-e-eccccccceeECCCCCeeEEEcC-----------------CCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence            0 0 01124567889999986665432                 35677777765543221110       112233456


Q ss_pred             ecCCCEEEEEeC-----------CCCeEEEEEecCCCCcceeeeeccCCCCCCce-eeCCCCCEEEEEeCcc
Q 022967          226 SKDEDYLVVCET-----------FKFRCLKYWLKGESKEQTEIFVENLPGGPDNI-KLAPDGSFWIAILQVF  285 (289)
Q Consensus       226 ~~d~~~l~v~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i-~~d~~G~lwv~~~~g~  285 (289)
                      ++++..+.++..           ..+.|..||......  ...+..........+ ++.++|.+.++..++.
T Consensus       353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~  422 (435)
T 4e54_B          353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSLNEFNPMGDTLASAMGYH  422 (435)
T ss_dssp             CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCEEEECTTSSCEEEECSSE
T ss_pred             cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEEEEECCCCCEEEEEcCCc
Confidence            666664444422           224577777653321  111211111122233 4677787766654443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.44  E-value=0.0074  Score=56.97  Aligned_cols=153  Identities=10%  Similarity=0.078  Sum_probs=84.0

Q ss_pred             ceEEEccCCCEE--EEecC----CeEEEEe-cCCceEEeeeecCc-CccCeEEcCCCc-EEEEeCCCc------------
Q 022967           80 EDVCVDRNGVLY--TATRD----GWIKRLH-KNGTWENWKLIGGD-TLLGITTTQENE-ILVCDADKG------------  138 (289)
Q Consensus        80 ~~l~~d~~g~l~--v~~~~----g~i~~~~-~~g~~~~~~~~~~~-p~~gl~~d~~g~-l~v~~~~~~------------  138 (289)
                      .++++.|||+..  ..+..    ..|+.++ .+|+.......... .. ++++.+||+ |+.+.....            
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            456888898854  22222    4688888 44543201111111 24 899999986 444443222            


Q ss_pred             -eEEEe-CCC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          139 -LLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       139 -i~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                       |++.+ .++ . ..+.....+.. ....++.+++||+ |.++....              .....|+.++..+++...+
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDP-TTFLQSDLSRDGKYLFVYILRG--------------WSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCT-TCEEEEEECTTSCCEEEEEEET--------------TTEEEEEEECTTCSSCEEE
T ss_pred             EEEEEECCCCchhceEEEecCCCC-EEEEEEEECCCCCEEEEEEeCC--------------CCceEEEEEcCCCCceEEe
Confidence             88887 444 2 22222211111 2345788999995 55543210              0124688887766666655


Q ss_pred             eCCCCCcceEEEecCCCEEEEEeC---CCCeEEEEEecCC
Q 022967          214 LDSLFFANGVALSKDEDYLVVCET---FKFRCLKYWLKGE  250 (289)
Q Consensus       214 ~~~~~~p~gl~~~~d~~~l~v~~~---~~~~i~~~~~~~~  250 (289)
                      ...........+ ++++ +|+...   .+.+|+++++++.
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            544333344444 6777 777644   3578999988654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0025  Score=58.49  Aligned_cols=132  Identities=13%  Similarity=0.051  Sum_probs=84.8

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEec-CCce--------EEeeee----cCcCccCeEEcCCCcEEEEeCCCceEEEe-
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW--------ENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVT-  143 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~--------~~~~~~----~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-  143 (289)
                      -.++++.|+|++. ++..+|.|..++. ++..        ..+...    ..... .+++.++| +..+..++.+..++ 
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEEC
Confidence            5579999988755 7788999999993 4432        333211    12445 89999999 66666667788888 


Q ss_pred             CCC-eE----EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCC
Q 022967          144 EEG-VT----VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSL  217 (289)
Q Consensus       144 ~~g-~~----~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~  217 (289)
                      .++ ..    .+..   + ......++++.  |...++..                  .+.|..+|.++++...+. ...
T Consensus       210 ~~~~~~~~~~tL~~---~-h~~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~  265 (588)
T 2j04_A          210 SASSHQPVSRMIQN---A-SRRKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSL  265 (588)
T ss_dssp             CSSSSCCCEEEEEC---C-CSSCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCC
T ss_pred             CCCccccceeeecc---c-ccCcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCC
Confidence            333 31    2211   1 11357788887  44444432                  267889998877775554 444


Q ss_pred             CCcceEEE--ecCCCEEEEEe
Q 022967          218 FFANGVAL--SKDEDYLVVCE  236 (289)
Q Consensus       218 ~~p~gl~~--~~d~~~l~v~~  236 (289)
                      ....++++  ++|+..+.++.
T Consensus       266 ~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          266 ENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             SCCCEEEETTCSSCEEEEECS
T ss_pred             ceEEEEEeeeCCCCCEEEEEc
Confidence            45678999  99987666664

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.42  E-value=0.042  Score=46.00  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             ceEEEccCCC-EEEEecCCeEEEEecCCceEEeeee---cCcCccCeEEcCCC--cEEEEe-CCCceEEEe-CCC--eEE
Q 022967           80 EDVCVDRNGV-LYTATRDGWIKRLHKNGTWENWKLI---GGDTLLGITTTQEN--EILVCD-ADKGLLKVT-EEG--VTV  149 (289)
Q Consensus        80 ~~l~~d~~g~-l~v~~~~g~i~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g--~l~v~~-~~~~i~~~~-~~g--~~~  149 (289)
                      ..+...+++. |+.+..++.+..++..+........   ..... .+++..++  .++++. ....+..++ .++  ...
T Consensus       132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS-CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc-ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence            3345555444 4456677777777743332221111   11222 55565443  455543 334466667 555  222


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~  229 (289)
                      +.. .    ......+++.|+|.+.++...                 .+.|..+|..+.+.............+++++++
T Consensus       211 ~~~-h----~~~v~~~~~s~~~~~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          211 HIG-H----TGYLNTVTVSPDGSLCASGGK-----------------DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             ECC-C----SSCEEEEEECTTSSEEEEEET-----------------TCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred             ecC-C----CCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence            211 1    124678999999987766432                 467888888766654444444556778899988


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcc-ee--ee---eccCCCCCCceeeCCCCCEEEEEe
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQ-TE--IF---VENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~-~~--~~---~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ..+..+  ..+.|..||+.+..... ..  ..   ..........+++.++|++.++..
T Consensus       269 ~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          269 YWLCAA--TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             SEEEEE--ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             ceeecc--CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            744333  35789999876542211 00  00   001112334577888887665543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.39  E-value=0.02  Score=49.28  Aligned_cols=138  Identities=12%  Similarity=0.054  Sum_probs=79.3

Q ss_pred             CCeEEEEe-cCCceEEeeeecCcCccCeEEcC-CCc-EEEEeCC------CceEEEe-CCC-eEEEEeccCCccccCccc
Q 022967           96 DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-ENE-ILVCDAD------KGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (289)
Q Consensus        96 ~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~-~g~-l~v~~~~------~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~  164 (289)
                      ...|+.++ .+|+...+........ .+.+.+ +|. |+++...      ..|+.++ ..+ .+.+...   .....+..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccc
Confidence            34688888 4566555444333344 678877 665 5554322      3588888 444 4443221   11123556


Q ss_pred             eEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEec-CCCEEEEEeC-----
Q 022967          165 LIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK-DEDYLVVCET-----  237 (289)
Q Consensus       165 l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~-d~~~l~v~~~-----  237 (289)
                      +++.|||+ |++....             .....+.|+.+|.++++...+.... ... +++++ |++.++.+..     
T Consensus       243 ~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC---
T ss_pred             eEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCccee
Confidence            79999996 6555321             0011134999998877765543211 122 78999 9996655431     


Q ss_pred             ----------CCCeEEEEEecCCCC
Q 022967          238 ----------FKFRCLKYWLKGESK  252 (289)
Q Consensus       238 ----------~~~~i~~~~~~~~~~  252 (289)
                                +...|+++|+++...
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBC
T ss_pred             eccccccccCCCCcEEEEecccCce
Confidence                      346899999876443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.38  E-value=0.012  Score=56.01  Aligned_cols=169  Identities=8%  Similarity=-0.003  Sum_probs=88.4

Q ss_pred             eEEEccCCCE-EEEecC---------CeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-
Q 022967           81 DVCVDRNGVL-YTATRD---------GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-  146 (289)
Q Consensus        81 ~l~~d~~g~l-~v~~~~---------g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-  146 (289)
                      ++++.|||+. .++..+         +.++.++ .+|+...+....+... ..++.+||+ |.++ ..+.|+.++ .+| 
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            3778898874 444432         5667888 4555544333233344 678889986 4334 346688888 555 


Q ss_pred             eEEEEecc-CCcc-------------ccCccceEEcCCCc-EEEeeC-CCccCcccc----------c--c-----ccce
Q 022967          147 VTVLASHV-NGSR-------------INLADDLIAATDGS-IYFSVA-STKFGLHNW----------G--L-----DLLE  193 (289)
Q Consensus       147 ~~~~~~~~-~~~~-------------~~~~~~l~~~~dG~-lyv~~~-~~~~~~~~~----------~--~-----~~~~  193 (289)
                      ...+.... ....             +....++.+.|||+ |.+... .+.......          .  .     ..-.
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            54443211 0000             12334688999996 544321 110000000          0  0     0001


Q ss_pred             ecCCCEEEEEeCCC---C---eEEEeeC------CCCCcceEEEecCCCEEE-EEeCCC--CeEEEEEecCCC
Q 022967          194 AKPHGKLLKYDPSL---N---ETSILLD------SLFFANGVALSKDEDYLV-VCETFK--FRCLKYWLKGES  251 (289)
Q Consensus       194 ~~~~g~i~~~~~~~---~---~~~~~~~------~~~~p~gl~~~~d~~~l~-v~~~~~--~~i~~~~~~~~~  251 (289)
                      ......|+.+|.++   +   +...+..      .......++|+||++.++ +..+..  ..|+.+|+++.+
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            12223688899887   6   4444432      222345678999998433 333332  268888887643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.36  E-value=0.019  Score=48.60  Aligned_cols=95  Identities=11%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             cCCcceEEEccC---CCE-EEEecCCeEEEEec-C-CceE--EeeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CC
Q 022967           76 LNGPEDVCVDRN---GVL-YTATRDGWIKRLHK-N-GTWE--NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EE  145 (289)
Q Consensus        76 ~~~p~~l~~d~~---g~l-~v~~~~g~i~~~~~-~-g~~~--~~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~  145 (289)
                      -..-.++++.++   |++ +++..+|.|..++. + +...  .+........ .+++.++++++++ ..+..+..++ .+
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            345677899987   454 47778899999983 3 4432  2222334445 8999998875554 4434566677 55


Q ss_pred             C-eEEEEeccCCccccCccceEE--cCCCcEEEe
Q 022967          146 G-VTVLASHVNGSRINLADDLIA--ATDGSIYFS  176 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~~l~~--~~dG~lyv~  176 (289)
                      + ...+... .    .....+++  .+++.++++
T Consensus       118 ~~~~~~~~~-~----~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          118 NQAIQIAQH-D----APVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             TEEEEEEEC-S----SCEEEEEEEECSSCEEEEE
T ss_pred             CCceeeccc-c----CceEEEEEEeCCCCCEEEE
Confidence            5 3332221 1    23456666  677764443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.34  E-value=0.025  Score=53.79  Aligned_cols=153  Identities=11%  Similarity=0.023  Sum_probs=83.2

Q ss_pred             eEEEccCCCEE-E-EecCC----eEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCC--------------ce
Q 022967           81 DVCVDRNGVLY-T-ATRDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK--------------GL  139 (289)
Q Consensus        81 ~l~~d~~g~l~-v-~~~~g----~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~--------------~i  139 (289)
                      ++++.|||+.. + .+..|    .|+.++ .+|+............ ++++.+|..|+++....              .|
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence            46788888744 3 33333    488888 4555433211112224 78898774466654322              26


Q ss_pred             EEEe-CCC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC--e-EEE
Q 022967          140 LKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--E-TSI  212 (289)
Q Consensus       140 ~~~~-~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--~-~~~  212 (289)
                      ++.+ .++ . ..+.....+.+ ....++.+++||+ |+++....             ......|+.+|.+++  + ...
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELP-KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCEE
T ss_pred             EEEECCCCchhCEEEeccCCCC-eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccEE
Confidence            6776 434 2 22222211111 1245788999996 55543210             002357888887766  4 555


Q ss_pred             eeCCCCCcceEEEecCCCEEEEEeCC---CCeEEEEEecC
Q 022967          213 LLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKG  249 (289)
Q Consensus       213 ~~~~~~~p~gl~~~~d~~~l~v~~~~---~~~i~~~~~~~  249 (289)
                      +.......... ++++++.||+....   +.+|+++++++
T Consensus       312 l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          312 LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            54433322333 45889988887542   46799999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.29  E-value=0.022  Score=47.88  Aligned_cols=151  Identities=15%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceE---EeeeecCcCccCeEEcC--CCcEEE-EeCCCceEEEe-CCC-e
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQ--ENEILV-CDADKGLLKVT-EEG-V  147 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~---~~~~~~~~p~~gl~~d~--~g~l~v-~~~~~~i~~~~-~~g-~  147 (289)
                      .-.+++++++|++. ++..++.|..++ .+++..   .+....+... .+++.+  +|++++ +..+..+..++ .++ .
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            34678899988766 666889999998 445322   2222233344 788854  365544 44445566677 555 3


Q ss_pred             EEEEeccCCccccCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEee---CCCCCcc
Q 022967          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILL---DSLFFAN  221 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~---~~~~~p~  221 (289)
                      ..... ..+. ....+.+++.|+  |.+.++...                 .+.|..++..++ ......   ......+
T Consensus        94 ~~~~~-~~~h-~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           94 EKSHE-HAGH-DSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             CEEEE-ECCC-SSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             eEEEE-ccCC-CCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            22211 1111 124678999987  655554332                 244555554433 222111   1112235


Q ss_pred             eEEEecCC-----------------CEEEEEeCCCCeEEEEEecC
Q 022967          222 GVALSKDE-----------------DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       222 gl~~~~d~-----------------~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .++|+|+.                 + ++++-...+.|..||+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECT
T ss_pred             eEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCC
Confidence            56777762                 3 455545567788888753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.28  E-value=0.063  Score=46.97  Aligned_cols=83  Identities=8%  Similarity=0.021  Sum_probs=53.7

Q ss_pred             CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC-CCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET-FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  275 (289)
                      .+.|..+|..+++.............+.++++++.++++.. ..+.|..||......  ...+. ...+....+++.++|
T Consensus       300 D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~--v~~l~-gH~~~V~~l~~spdg  376 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELK-GHTSRVLSLTMSPDG  376 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTS
T ss_pred             CCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE--EEEEc-CCCCCEEEEEEcCCC
Confidence            46788888887776655555556778899999998877643 457899998764321  22221 222345567888888


Q ss_pred             CEEEEEe
Q 022967          276 SFWIAIL  282 (289)
Q Consensus       276 ~lwv~~~  282 (289)
                      .+.++..
T Consensus       377 ~~l~S~s  383 (420)
T 4gga_A          377 ATVASAA  383 (420)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEe
Confidence            6655543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.25  E-value=0.0036  Score=57.21  Aligned_cols=124  Identities=15%  Similarity=0.233  Sum_probs=77.7

Q ss_pred             cccCccceEEcC-CCcEEEeeCCCc-cCcc---ccccccceecCCCEEEEEeCCCC-------eEEEee-----------
Q 022967          158 RINLADDLIAAT-DGSIYFSVASTK-FGLH---NWGLDLLEAKPHGKLLKYDPSLN-------ETSILL-----------  214 (289)
Q Consensus       158 ~~~~~~~l~~~~-dG~lyv~~~~~~-~~~~---~~~~~~~~~~~~g~i~~~~~~~~-------~~~~~~-----------  214 (289)
                      ++..|.+++++| +|.+|++-.... .+..   .........+..|.|+++..+++       +++.+.           
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            445688999998 789999865421 1100   00011223356789999986532       133332           


Q ss_pred             -----------CCCCCcceEEEecCCCEEEE-EeCC-----------CCeEEEEEecCCCCcceeeeeccC-CCCCCcee
Q 022967          215 -----------DSLFFANGVALSKDEDYLVV-CETF-----------KFRCLKYWLKGESKEQTEIFVENL-PGGPDNIK  270 (289)
Q Consensus       215 -----------~~~~~p~gl~~~~d~~~l~v-~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~  270 (289)
                                 ..+..|+.|+|+++|. ||+ +|..           ++.+++++.+..   ....|.... ...|.|++
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG---el~~fl~~P~~aEpnGia  537 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATG---EIRRFMVGPIGCEVTGIS  537 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTC---CEEEEEECCTTCEEEEEE
T ss_pred             cccCccCccccCccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCC---eEEEEEeCCCCccccCCE
Confidence                       0257799999999988 899 6542           347888875432   344454322 24689999


Q ss_pred             eCCCC-CEEEEEeCcc
Q 022967          271 LAPDG-SFWIAILQVF  285 (289)
Q Consensus       271 ~d~~G-~lwv~~~~g~  285 (289)
                      +..|+ .|||+....|
T Consensus       538 fSPD~ktLfV~vQHPG  553 (592)
T 4a9v_A          538 FSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             ECTTSSEEEEEEESTT
T ss_pred             ECCCCCEEEEEEeCCC
Confidence            99998 6899876544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.24  E-value=0.0095  Score=56.67  Aligned_cols=131  Identities=7%  Similarity=-0.053  Sum_probs=76.2

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecC-cCc----cCeEEcCCCc-EEEEeCC---------CceEEEe
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-DTL----LGITTTQENE-ILVCDAD---------KGLLKVT  143 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~-~p~----~gl~~d~~g~-l~v~~~~---------~~i~~~~  143 (289)
                      .++.+.++|.+++.. ++.|+.++ .+|+...+..... ...    .++++.+||+ |+++...         ..++.+|
T Consensus        20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            356788888776655 88999999 5566544433211 111    0367789997 4443321         1255677


Q ss_pred             -CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-C---
Q 022967          144 -EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S---  216 (289)
Q Consensus       144 -~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~---  216 (289)
                       .+| ...+... .    ......+++|||+ |.++.                   .+.|+..+.++++...+.. +   
T Consensus        99 ~~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           99 LNKRQLITEERI-P----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             TTTTEECCSSCC-C----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBTT
T ss_pred             CCCCcEEEcccC-C----CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCcc
Confidence             555 4332111 1    1345778999995 55542                   1468888877666544422 1   


Q ss_pred             ---------------CCCcceEEEecCCCEEEEE
Q 022967          217 ---------------LFFANGVALSKDEDYLVVC  235 (289)
Q Consensus       217 ---------------~~~p~gl~~~~d~~~l~v~  235 (289)
                                     +....+++|+|||+.|...
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence                           1222458899999977765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0057  Score=55.91  Aligned_cols=149  Identities=7%  Similarity=-0.014  Sum_probs=89.5

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEec-CCce--EEeeeecCcCccCe--EEcCCC-cEEEEeCCCc-eEEEe-CCC--eE
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTW--ENWKLIGGDTLLGI--TTTQEN-EILVCDADKG-LLKVT-EEG--VT  148 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~-~g~~--~~~~~~~~~p~~gl--~~d~~g-~l~v~~~~~~-i~~~~-~~g--~~  148 (289)
                      ..++++.+++.|.++..+|.|..++. ++..  ..+........ ++  ++.++| .++++....+ +..+| .++  ..
T Consensus       269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             EEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            45678877777778889999999994 3432  22222223334 77  456777 7766554444 55566 444  33


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE-EEeeCCCCCcceEEEec
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSK  227 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~p~gl~~~~  227 (289)
                      .+.....+   .....+++.|+|..+++...                 .+.|..+|..++.. ..+.......+.++|+|
T Consensus       348 ~~~~~~~~---~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          348 TTVSRFRG---SNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEEEECSC---CSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             cccccccc---CcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            33221111   12568999999987776432                 24566777765542 33333444567899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +++.|. +....+.|..|++..
T Consensus       408 ~g~~l~-Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          408 LHPMVL-AGSADGSLIITNAAR  428 (524)
T ss_dssp             SCCBCE-EEETTTEEECCBSCS
T ss_pred             CCCeEE-EEECCCEEEEEechH
Confidence            998554 445557777776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.22  E-value=0.039  Score=46.36  Aligned_cols=150  Identities=14%  Similarity=0.061  Sum_probs=77.8

Q ss_pred             cceEEEcc--CCC-EEEEecCCeEEEEe-cCCceE---EeeeecCcCccCeEEcCC--CcEEEEeCC-CceEEEe-CCC-
Q 022967           79 PEDVCVDR--NGV-LYTATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQE--NEILVCDAD-KGLLKVT-EEG-  146 (289)
Q Consensus        79 p~~l~~d~--~g~-l~v~~~~g~i~~~~-~~g~~~---~~~~~~~~p~~gl~~d~~--g~l~v~~~~-~~i~~~~-~~g-  146 (289)
                      -.++++.+  +|+ |..+..++.|..++ .+++..   .+........ .+++.++  |.++++... ..+..++ ..+ 
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            45677753  355 55677889999998 445322   2222233445 8999876  655555433 4455555 332 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCC-----------------cEEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDG-----------------SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG-----------------~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                       .... ....+ .......+.+.|++                 .++++..                 ..+.|..+|.+++
T Consensus       139 ~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-----------------~D~~v~lWd~~~~  199 (316)
T 3bg1_A          139 QWEVK-KINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-----------------CDNLIKLWKEEED  199 (316)
T ss_dssp             CEEEC-CBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB-----------------TTSBCCEEEECTT
T ss_pred             Cccee-eeecc-ccCCcceEEEccccCCccccccccccCccccceEEEec-----------------CCCeEEEEEeCCC
Confidence             2211 11111 11234566777663                 2222211                 2233444443322


Q ss_pred             -eEEE---eeCCCCCcceEEEecCC----CEEEEEeCCCCeEEEEEecC
Q 022967          209 -ETSI---LLDSLFFANGVALSKDE----DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       209 -~~~~---~~~~~~~p~gl~~~~d~----~~l~v~~~~~~~i~~~~~~~  249 (289)
                       ....   +.........++|+|++    + ++++....+.|..|++..
T Consensus       200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             SCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSS
T ss_pred             CccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccC
Confidence             2222   22223345788999986    4 555556678999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.047  Score=47.81  Aligned_cols=154  Identities=11%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             CCcceEEEcc-CCCEE-EEecCCeEEEEec-C---Cc-eE-Eee-eecCcCccCeEEcCCCcEEEEeCC-CceEEEe-C-
Q 022967           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLHK-N---GT-WE-NWK-LIGGDTLLGITTTQENEILVCDAD-KGLLKVT-E-  144 (289)
Q Consensus        77 ~~p~~l~~d~-~g~l~-v~~~~g~i~~~~~-~---g~-~~-~~~-~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~-  144 (289)
                      ....++++.+ +|.+. ++..+|.|..++. +   +. .. ... ....... .+++.+++.++++... ..|..++ . 
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vwd~~~  142 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVT-QITMIPNFDAFAVSSKDGQIIVLKVNH  142 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence            4567899999 88766 6668899999982 2   32 11 111 2233445 8999988876555433 3344443 1 


Q ss_pred             --CC--eEEEEec----cCCc---cccCccceE--EcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          145 --EG--VTVLASH----VNGS---RINLADDLI--AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       145 --~g--~~~~~~~----~~~~---~~~~~~~l~--~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                        ++  .......    ..-.   .......+.  ..+++.+.++..                 ..+.|..+|..+++..
T Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----------------NLSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----------------TTSEEEEEETTTCCEE
T ss_pred             ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCeee
Confidence              34  2211100    0000   011222333  446676555432                 2478888998766654


Q ss_pred             EeeCC---CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          212 ILLDS---LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       212 ~~~~~---~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .....   ......++|+|+++.|+.+. ..+.|..||+..
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~  245 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRF  245 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTT
T ss_pred             EEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCC
Confidence            33332   34567899999999666664 457899999764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.16  E-value=0.015  Score=48.50  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             CCcceEEEccC--CCEE-EEecCCeEEEEe-cCCce-EEee-------------eecCcCccCeEEcCC---CcEEEEeC
Q 022967           77 NGPEDVCVDRN--GVLY-TATRDGWIKRLH-KNGTW-ENWK-------------LIGGDTLLGITTTQE---NEILVCDA  135 (289)
Q Consensus        77 ~~p~~l~~d~~--g~l~-v~~~~g~i~~~~-~~g~~-~~~~-------------~~~~~p~~gl~~d~~---g~l~v~~~  135 (289)
                      ....++++.++  +.+. ++..++.|..++ .+++. ..+.             ....... .+++.++   +.++++..
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~l~~~~  189 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF-CLSWCPSRFSPEKLAVSA  189 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE-EEEECCCSSSCCEEEEEE
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee-EEEeccCCCCCcEEEEec
Confidence            44667889887  7755 677889999998 33321 1110             0112233 6777765   65555443


Q ss_pred             CCceEEEe--CCC-eEEEEeccCCccccCccceEEcCCC----cEEEee
Q 022967          136 DKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDG----SIYFSV  177 (289)
Q Consensus       136 ~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG----~lyv~~  177 (289)
                      ..+...+.  .++ ...+.. ..+ .......+++.|+|    .+.++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~-~~~-h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          190 LEQAIIYQRGKDGKLHVAAK-LPG-HKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             TTEEEEEEECTTSCEEEEEE-CCC-CCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCCcEEEEccCCCceeeeee-cCC-CCcceeEEEECCCCCCcceEEEEE
Confidence            44433443  444 433322 111 11246688999987    555543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.09  E-value=0.019  Score=54.24  Aligned_cols=110  Identities=12%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecC------------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~------------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~  151 (289)
                      +|.||+.+.++.|+.+| .+|+...-.....            ... +++++ ++.||++.....++.+| .+| ...-.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEE-CCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            78999998888999999 5776542221110            123 67774 67899988667799999 678 43322


Q ss_pred             ecc-CCcc-ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          152 SHV-NGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       152 ~~~-~~~~-~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ... .... ........+ .++.+|++.....+            ...+.|+.+|.++|+..
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEY------------GVRGYITAYDAETGERK  203 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEeccccc------------CCCCEEEEEECCCCcEE
Confidence            211 1000 011112223 26788887542111            12467899998877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.08  E-value=0.037  Score=47.41  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=65.5

Q ss_pred             CcCccCeEEcCCCcEEEEeCC-Cc-eEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccc
Q 022967          116 GDTLLGITTTQENEILVCDAD-KG-LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (289)
Q Consensus       116 ~~p~~gl~~d~~g~l~v~~~~-~~-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~  190 (289)
                      +... .++++++|+++++... .. +..+| .++  +..+...   ........+++.|||.+.++...           
T Consensus       196 ~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~~~~~l~s~s~-----------  260 (355)
T 3vu4_A          196 NPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG---LDRADVVDMKWSTDGSKLAVVSD-----------  260 (355)
T ss_dssp             SCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT---TCCSCEEEEEECTTSCEEEEEET-----------
T ss_pred             CceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC---CCCCcEEEEEECCCCCEEEEEEC-----------
Confidence            3345 8999999987766544 44 66677 566  4444311   01135678999999987766432           


Q ss_pred             cceecCCCEEEEEeCCCCe---EEEe--------------------eCC-CCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          191 LLEAKPHGKLLKYDPSLNE---TSIL--------------------LDS-LFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       191 ~~~~~~~g~i~~~~~~~~~---~~~~--------------------~~~-~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                            .+.|..+|.+.+.   ...+                    ... ......++|++|++.+++. ...+.+.+|+
T Consensus       261 ------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~-~~dg~~~~~~  333 (355)
T 3vu4_A          261 ------KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW-PHTRMIETFK  333 (355)
T ss_dssp             ------TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE-TTTTEEEEEE
T ss_pred             ------CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE-eCCCeEEEEE
Confidence                  3456556654221   1110                    000 0111457899999866666 4568888888


Q ss_pred             ecC
Q 022967          247 LKG  249 (289)
Q Consensus       247 ~~~  249 (289)
                      +..
T Consensus       334 ~~~  336 (355)
T 3vu4_A          334 VVF  336 (355)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.06  E-value=0.13  Score=47.47  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=17.6

Q ss_pred             CCCEEEEec------CCeEEEEe-cCCceE
Q 022967           87 NGVLYTATR------DGWIKRLH-KNGTWE  109 (289)
Q Consensus        87 ~g~l~v~~~------~g~i~~~~-~~g~~~  109 (289)
                      +|.+|++..      ++.|+.+| .+|+..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            678888775      68899999 577654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.041  Score=50.23  Aligned_cols=174  Identities=7%  Similarity=-0.070  Sum_probs=92.6

Q ss_pred             cceEEEccC------CCEE-EEecCCeEEEEec-CCceE------------EeeeecCcCccCeEEcCCCcEEEEeCCCc
Q 022967           79 PEDVCVDRN------GVLY-TATRDGWIKRLHK-NGTWE------------NWKLIGGDTLLGITTTQENEILVCDADKG  138 (289)
Q Consensus        79 p~~l~~d~~------g~l~-v~~~~g~i~~~~~-~g~~~------------~~~~~~~~p~~gl~~d~~g~l~v~~~~~~  138 (289)
                      ...+++.|+      +.+. .+..+|.|..++. .+...            .+........ .+++.+++.|..+..+..
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~Dgt  288 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNGF  288 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTSE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCCE
Confidence            456777765      4455 5668899999983 33211            1111112234 788877665655555455


Q ss_pred             eEEEe-CCC--e-EEEEeccCCccccCccce--EEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          139 LLKVT-EEG--V-TVLASHVNGSRINLADDL--IAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       139 i~~~~-~~g--~-~~~~~~~~~~~~~~~~~l--~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      |..+| .++  . ..+.. ..    ....++  ++.++| .+.++...                 .+.|..+|..+++..
T Consensus       289 V~lWD~~~~~~~~~~~~~-H~----~~V~sv~~~~s~~g~~~laS~S~-----------------D~tvklWD~~~~~~~  346 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQV-HD----SYILSVSTAYSDFEDTVVSTVAV-----------------DGYFYIFNPKDIATT  346 (524)
T ss_dssp             EEEEETTBCSSCSEEEEC-SS----SCEEEEEEECCTTSCCEEEEEET-----------------TSEEEEECGGGHHHH
T ss_pred             EEEEECCCCCCceEEeec-cc----ccEEEEEEEcCCCCCeEEEEecc-----------------CCeEEEEECCCCCcc
Confidence            66677 444  2 22211 11    235566  456777 77666432                 466777776543321


Q ss_pred             -EeeCCC--CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967          212 -ILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       212 -~~~~~~--~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  279 (289)
                       .+....  .....++|+|+++. +++....+.|..||+......  ..+. ...+....+++.++|.+.+
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~--~~l~-gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAV--HPLV-SRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCC--EEEE-ECSSCEEEEECCSSCCBCE
T ss_pred             cccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccc--eeee-cCCCceEEEEeCCCCCeEE
Confidence             111111  12467999999985 555556678888887543211  1111 1122344555666664433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.02  E-value=0.078  Score=48.92  Aligned_cols=109  Identities=14%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCEEEEec-CCeEEEEec--CCceEEeeeecC------------cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEE
Q 022967           87 NGVLYTATR-DGWIKRLHK--NGTWENWKLIGG------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTV  149 (289)
Q Consensus        87 ~g~l~v~~~-~g~i~~~~~--~g~~~~~~~~~~------------~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~  149 (289)
                      +|.||+.+. ++.|+.+|.  +|+.........            ... +++++ ++.||+......++.+| .+| ...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccc-ccEEE-CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            789999887 889999995  776542221111            112 56664 67899987667799999 788 433


Q ss_pred             EEeccCCcc--ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          150 LASHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       150 ~~~~~~~~~--~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      -.. ..+..  ......-.+. +|.+|++.....            ....+.|+.+|+++|+..
T Consensus       140 ~~~-~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          140 EVE-VCDPKVGSTLTQAPFVA-KDTVLMGCSGAE------------LGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEE-CCCGGGTCBCCSCCEEE-TTEEEEECBCGG------------GTCCCEEEEEETTTCCEE
T ss_pred             Eec-CCCCCccceeccCCEEE-CCEEEEEecCCc------------cCCCCEEEEEECCCCcEE
Confidence            222 11110  0111112232 678998754210            012468999998877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.94  E-value=0.04  Score=48.91  Aligned_cols=151  Identities=13%  Similarity=0.116  Sum_probs=84.4

Q ss_pred             CcceEEEccCCCEEE----Ee-cCCeEEEEe-cCC-----ce----EEeee---ecCcCccCeEEcCC-CcEEEE-eCCC
Q 022967           78 GPEDVCVDRNGVLYT----AT-RDGWIKRLH-KNG-----TW----ENWKL---IGGDTLLGITTTQE-NEILVC-DADK  137 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v----~~-~~g~i~~~~-~~g-----~~----~~~~~---~~~~p~~gl~~d~~-g~l~v~-~~~~  137 (289)
                      ...++++.++|++.+    +. .++.|..|+ .++     +.    ..+..   ...... +++++++ ++++++ ...+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            467899999888664    33 567888888 221     11    11111   123445 8999987 666664 4445


Q ss_pred             ceEEEe-CCCeEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC
Q 022967          138 GLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (289)
Q Consensus       138 ~i~~~~-~~g~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~  216 (289)
                      .+..+| .++....... .  ....+.++++.|+|...++..                 ..+.|..+|.++.....+...
T Consensus       173 ~v~iwD~~~~~~~~~~~-~--~~~~v~~v~wspdg~~lasgs-----------------~dg~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          173 SIAVLQVTETVKVCATL-P--STVAVTSVCWSPKGKQLAVGK-----------------QNGTVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             CEEEEEESSSEEEEEEE-C--GGGCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTCCEEEEECCC
T ss_pred             eEEEEEcCCCcceeecc-C--CCCceeEEEEcCCCCEEEEEc-----------------CCCcEEEEccCCcccccccCC
Confidence            577777 5552111111 1  113567899999996444432                 246788888873323222211


Q ss_pred             C-------CCcceEEEecCCCEEEEEeCCC------CeEEEEEecC
Q 022967          217 L-------FFANGVALSKDEDYLVVCETFK------FRCLKYWLKG  249 (289)
Q Consensus       217 ~-------~~p~gl~~~~d~~~l~v~~~~~------~~i~~~~~~~  249 (289)
                      .       .....++|++++.++.+...+.      ..+..|++..
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            1       1345678888776554444333      2367777653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.94  E-value=0.0094  Score=56.22  Aligned_cols=164  Identities=7%  Similarity=-0.012  Sum_probs=85.0

Q ss_pred             cceEEEccCCCEE-EEec---------CCeEEEEec-CCce---EEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-
Q 022967           79 PEDVCVDRNGVLY-TATR---------DGWIKRLHK-NGTW---ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-  143 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~---------~g~i~~~~~-~g~~---~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-  143 (289)
                      ..++++.|||+.. ++..         ++.|+.++. +|+.   ..+   ..... .+++.+||+..+....+.|+.++ 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            5678999999844 4433         478888984 4544   222   13345 89999999643333346788888 


Q ss_pred             CCC-eEEEEeccCCc-c-------------ccCccceEEcCCCc-EEEeeCC-CccCcc--------ccc-------ccc
Q 022967          144 EEG-VTVLASHVNGS-R-------------INLADDLIAATDGS-IYFSVAS-TKFGLH--------NWG-------LDL  191 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~-~-------------~~~~~~l~~~~dG~-lyv~~~~-~~~~~~--------~~~-------~~~  191 (289)
                      .+| ...+....... -             +....++++.|||+ |+++... ......        ...       ...
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            556 44332211000 0             11225899999996 4443211 000000        000       000


Q ss_pred             ceecCCCEEEEEeCCCCeEE---Eee------CCCCCcceEEEecCCCEEEEE-eCCC--CeEEEEE
Q 022967          192 LEAKPHGKLLKYDPSLNETS---ILL------DSLFFANGVALSKDEDYLVVC-ETFK--FRCLKYW  246 (289)
Q Consensus       192 ~~~~~~g~i~~~~~~~~~~~---~~~------~~~~~p~gl~~~~d~~~l~v~-~~~~--~~i~~~~  246 (289)
                      -.......|+.+|.++++..   .+.      ........++|+||++.++.. +...  ..|+.+|
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            00112236788888766531   221      122234678999997644432 2222  3588888

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.89  E-value=0.12  Score=48.68  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      .+.|..+|+.+++..-.........+..+..+++.+|++ +..+.++.||..+.+...  .+.......-.-+....+|.
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~~y~~~G~  532 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLW--EAPTGTGVVAAPSTYMVDGR  532 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceee--eeeCCCCcccCCEEEEeCCE
Confidence            378999999988754322211223455666778878887 567899999976443221  12111111112244346788


Q ss_pred             EEEEEeCc
Q 022967          277 FWIAILQV  284 (289)
Q Consensus       277 lwv~~~~g  284 (289)
                      .||+...|
T Consensus       533 ~~v~~~~G  540 (677)
T 1kb0_A          533 QYVSVAVG  540 (677)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.88  E-value=0.13  Score=48.28  Aligned_cols=84  Identities=18%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCE
Q 022967          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  277 (289)
                      +.|+.+|+.+++..--........+..+...++.+|+. +....|+.||....+...  .+.........-+..-.+|++
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~l~--~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEALW--QFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChhhe--EecCCCCcccCceEEEECCEE
Confidence            78999999988764322211222344555567778887 566899999976432211  111111111122333456888


Q ss_pred             EEEEeCc
Q 022967          278 WIAILQV  284 (289)
Q Consensus       278 wv~~~~g  284 (289)
                      |++..+|
T Consensus       515 yva~~~G  521 (668)
T 1kv9_A          515 YVAIMAG  521 (668)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.85  E-value=0.16  Score=47.77  Aligned_cols=156  Identities=13%  Similarity=0.043  Sum_probs=82.0

Q ss_pred             ceEEEccCCCEE--EEecCC----eEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-------------Cc
Q 022967           80 EDVCVDRNGVLY--TATRDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-------------KG  138 (289)
Q Consensus        80 ~~l~~d~~g~l~--v~~~~g----~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-------------~~  138 (289)
                      .++++.|||+..  ..+..|    .|+.++ .+|+............ ++++. ||+ |+++...             ..
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            346788888743  333332    477777 4566433221112234 77887 774 6665432             22


Q ss_pred             eEEEe-CCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC--eEEE
Q 022967          139 LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ETSI  212 (289)
Q Consensus       139 i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--~~~~  212 (289)
                      |++.+ ..+  ...++.......-....++.+++||+ |+++....              .....|+.+|.+++  +...
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--------------~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS--------------TSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS--------------SSCCEEEEEETTSTTCCCEE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC--------------CCCcEEEEEECCCCCCceEE
Confidence            66666 333  21222211110001234678899996 55543220              01247888887654  4555


Q ss_pred             eeCCCCCcceEEEecCCCEEEEEeCC---CCeEEEEEecCCCC
Q 022967          213 LLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGESK  252 (289)
Q Consensus       213 ~~~~~~~p~gl~~~~d~~~l~v~~~~---~~~i~~~~~~~~~~  252 (289)
                      +......-.. .++++++.||+....   +.+|+++++++...
T Consensus       276 l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~  317 (693)
T 3iuj_A          276 VQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP  317 (693)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             EeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            5433322222 267788888876432   47899999876433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.84  E-value=0.16  Score=41.93  Aligned_cols=82  Identities=9%  Similarity=0.015  Sum_probs=49.0

Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe-CCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE-TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      +.|..++..................+.++++++.++++. ...+.|..||+.....  ...+. ...+....+++.++|.
T Consensus       221 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~-gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--VAELK-GHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSS
T ss_pred             CEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE--EEEEc-CCCCCEEEEEEcCCCC
Confidence            455556665554444444444556778999999877764 3467899998764321  12221 2223455688888887


Q ss_pred             EEEEEe
Q 022967          277 FWIAIL  282 (289)
Q Consensus       277 lwv~~~  282 (289)
                      +.++..
T Consensus       298 ~l~S~s  303 (318)
T 4ggc_A          298 TVASAA  303 (318)
T ss_dssp             CEEEEE
T ss_pred             EEEEEe
Confidence            655543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.83  E-value=0.21  Score=46.19  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             CCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967          197 HGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  275 (289)
                      .+.|+.+|+.+++..-- ..+... .+-.+...++.+|++ +..+.|+.||.++.+....  +.........-+....+|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~g-~~dg~l~A~D~~tG~~lW~--~~~~~g~~a~P~~y~~~G  540 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTG-TGDGYFKAFDAKSGKELWK--FQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEE-CTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETT
T ss_pred             cceEEEEECCCCCEEEEecCCCCC-cccceEeCCCEEEEE-CCCCcEEEEECCCCCEEEE--ecCCCCcccCceEEEECC
Confidence            57899999988875422 122111 222223346667776 4568899999764333211  111111111225555789


Q ss_pred             CEEEEEeCc
Q 022967          276 SFWIAILQV  284 (289)
Q Consensus       276 ~lwv~~~~g  284 (289)
                      +.||+...|
T Consensus       541 ~qYv~~~~G  549 (582)
T 1flg_A          541 EQYLGVTVG  549 (582)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEcc
Confidence            999998765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.81  E-value=0.1  Score=49.34  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             CEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC
Q 022967          198 GKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  276 (289)
                      +.|..+|+.+|+..-.. .+... .+-.+...++.+|++ +..+.|+.||.++.+...  .+.........-++...+|.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw--~~~~~~~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLW--EQPAASGVMAAPVTYSVDGE  530 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEE--EEECSSCCCSCCEEEEETTE
T ss_pred             eeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEE-CCCCcEEEEECCCCccce--eeeCCCCcccCceEEEECCE
Confidence            77999999988764322 22222 233556667767777 567899999976543321  12111111112254456789


Q ss_pred             EEEEEeCc
Q 022967          277 FWIAILQV  284 (289)
Q Consensus       277 lwv~~~~g  284 (289)
                      .||+...|
T Consensus       531 qyv~~~~G  538 (689)
T 1yiq_A          531 QYVTFMAG  538 (689)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99997654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.80  E-value=0.14  Score=45.02  Aligned_cols=146  Identities=14%  Similarity=0.015  Sum_probs=75.0

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEecc
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHV  154 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~  154 (289)
                      .++.++ +..++++..++.|..++ .+++...... ...... .+.++. ..++.+..+..+..++ .++  +..+....
T Consensus       283 ~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  359 (445)
T 2ovr_B          283 YSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPN  359 (445)
T ss_dssp             EEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             EEEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEEeC-CEEEEEeCCCeEEEEECCCCcEEEEEccCC
Confidence            344442 22344666777788887 4454332222 122223 555542 2344444445566777 555  33332110


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee------CCCCCcceEEEecC
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------DSLFFANGVALSKD  228 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~------~~~~~p~gl~~~~d  228 (289)
                        ........++++  +.+.++..                 ..+.|..+|..+++.....      ........++++|+
T Consensus       360 --~~~~~v~~~~~~--~~~l~s~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          360 --KHQSAVTCLQFN--KNFVITSS-----------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             --SCSSCEEEEEEC--SSEEEEEE-----------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             --CCCCCEEEEEEC--CCEEEEEe-----------------CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence              011234456664  44444432                 2477888888766643322      11233567899999


Q ss_pred             CCEEEEEeCCC---CeEEEEEecC
Q 022967          229 EDYLVVCETFK---FRCLKYWLKG  249 (289)
Q Consensus       229 ~~~l~v~~~~~---~~i~~~~~~~  249 (289)
                      +..+.++....   ..|..||++.
T Consensus       419 ~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          419 KLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEEcccCCCCccEEEEEECCC
Confidence            88666654432   2488888764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.035  Score=48.65  Aligned_cols=150  Identities=11%  Similarity=0.072  Sum_probs=85.4

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEec----CCceEEeee-------------ecCcCccCeE--EcCCCcEEEE-eCC
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK----NGTWENWKL-------------IGGDTLLGIT--TTQENEILVC-DAD  136 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~~----~g~~~~~~~-------------~~~~p~~gl~--~d~~g~l~v~-~~~  136 (289)
                      ...++++.+++.+. ++..+|.|..++.    +|+......             ...... .+.  +.+++.++++ ...
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            35678888877755 6778898888873    444322211             011112 333  3456665554 443


Q ss_pred             CceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       137 ~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      ..|..+| .++  +..+...   ........++++|+|.+.++...                 .+.|..+|.++++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGTT-----------------RGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEEcCCccEEEE
Confidence            5577777 555  3333221   01135678999999986665432                 36788888876665432


Q ss_pred             e--CCCCCcceEEEe----cCCCEEEEEeCCCCeEEEEEecC
Q 022967          214 L--DSLFFANGVALS----KDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       214 ~--~~~~~p~gl~~~----~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .  ........++++    ++++ ++++....+.|..||+..
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             EecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence            2  222334566554    4555 445545667899998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.72  E-value=0.11  Score=48.94  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeec-----------Cc-CccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG-----------GD-TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-----------~~-p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~  151 (289)
                      +|.||+++.++.|+.+| .+|+........           .. .. +++++ ++.||+......++.+| .+| ...-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEEE-CCEEEEEccCCEEEEEECCCCCEeeee
Confidence            78999999888999999 578754322111           01 12 56664 67899988667799999 778 43322


Q ss_pred             ecc-CCcc-ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          152 SHV-NGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       152 ~~~-~~~~-~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ... .... ......-.+ .+|.+|++.....+            ...+.|+.+|.++|+..
T Consensus       148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             cCcCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEE
Confidence            211 1000 011111122 26788887542111            12468899998887753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.69  E-value=0.28  Score=42.98  Aligned_cols=82  Identities=7%  Similarity=-0.041  Sum_probs=42.9

Q ss_pred             CCEEEEEeCCCCeEEEeeCC----CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcc-eeeee-ccCCCCCCcee
Q 022967          197 HGKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFV-ENLPGGPDNIK  270 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~----~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~~~p~~i~  270 (289)
                      .+.|..+|.++++.......    ......+++  +++.++.+ ...+.|..|++....... ..... ....+....++
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  414 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITS-SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  414 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEE-ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEE-eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence            46788888766654433322    222345566  45655554 556899999986543211 11110 11223345577


Q ss_pred             eCCCCCEEEEE
Q 022967          271 LAPDGSFWIAI  281 (289)
Q Consensus       271 ~d~~G~lwv~~  281 (289)
                      .+++|.+.++.
T Consensus       415 ~s~~~~~la~~  425 (445)
T 2ovr_B          415 ASNTKLVCAVG  425 (445)
T ss_dssp             ECSSEEEEEEE
T ss_pred             ecCCEEEEEEc
Confidence            77777554443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.66  E-value=0.086  Score=49.60  Aligned_cols=110  Identities=13%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeec-----------Cc-CccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG-----------GD-TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-----------~~-p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~  151 (289)
                      +|.||+++.++.|+.+| .+|+........           .. .. +++++ ++.||+......++.+| .+| ...-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEE-CCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            78999999889999999 678754222111           01 13 56664 57899988667799999 778 43322


Q ss_pred             eccCC-ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          152 SHVNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       152 ~~~~~-~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ..... ........-.+ .+|.+|++.....+            ...+.|+.+|.++|+..
T Consensus       144 ~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV-VKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             ccCCCCCcceecCCCEE-ECCEEEEeCCCCCc------------CCCCEEEEEECCCCcEE
Confidence            21110 00111111222 26788887543111            12467899998877654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.63  E-value=0.3  Score=42.52  Aligned_cols=144  Identities=14%  Similarity=0.026  Sum_probs=84.1

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeee--cCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEe
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI--GGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~  152 (289)
                      ..|+..+++.|.++. ++.|+.|+ .+|+.......  ....++.++|.++|+++++ .....|..++ .++  +..+..
T Consensus       109 ~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          109 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence            346776655444665 78899999 67776544332  2233338999999986655 4435566777 556  333211


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCCCCCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~~~~p~gl~~~~d~~  230 (289)
                             +...-.++..++.+.++..                 ..+.+..+|.....  ...+.........+.++++++
T Consensus       188 -------h~~~v~~~s~~~~~l~sgs-----------------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~  243 (420)
T 4gga_A          188 -------HSARVGSLSWNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR  243 (420)
T ss_dssp             -------CSSCEEEEEEETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             -------CCCceEEEeeCCCEEEEEe-----------------CCCceeEeeecccceeeEEecccccceeeeeecCCCC
Confidence                   1112223444566555432                 23566667655322  233334445567788999999


Q ss_pred             EEEEEeCCCCeEEEEEecC
Q 022967          231 YLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~  249 (289)
                      .+... ...+.+..++...
T Consensus       244 ~l~s~-~~D~~v~i~~~~~  261 (420)
T 4gga_A          244 HLASG-GNDNLVNVWPSAP  261 (420)
T ss_dssp             EEEEE-ETTSCEEEEESSC
T ss_pred             eeeee-eccccceEEeecc
Confidence            66555 4557888888754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.45  E-value=0.084  Score=44.49  Aligned_cols=137  Identities=9%  Similarity=-0.006  Sum_probs=76.0

Q ss_pred             CCeEEEEec-CCceEEeeeecCcCccCeEEcCCCc-EEEEeC-C----CceEEEe-CCC-eEEEEeccCCccccCccceE
Q 022967           96 DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D----KGLLKVT-EEG-VTVLASHVNGSRINLADDLI  166 (289)
Q Consensus        96 ~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~-~----~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~  166 (289)
                      .+.|+.++. +|+...+    .... .+++.+||+ |+++.. .    ..|+.++ ..| ...+... .    . ...+.
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~----~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K----N-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S----E-EEEEE
T ss_pred             cceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C----C-cccee
Confidence            456888884 4454443    3344 788999996 444432 1    2388888 556 5444331 1    1 56789


Q ss_pred             EcCCCc-EEEeeCCCcc-Cccccccc-cc--ee-----cCCCEEEEEeCCCCeE-EEeeCCCCCcceEEEecCCCEEEEE
Q 022967          167 AATDGS-IYFSVASTKF-GLHNWGLD-LL--EA-----KPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVC  235 (289)
Q Consensus       167 ~~~dG~-lyv~~~~~~~-~~~~~~~~-~~--~~-----~~~g~i~~~~~~~~~~-~~~~~~~~~p~gl~~~~d~~~l~v~  235 (289)
                      +.|||+ |+++.....- ........ .+  .+     .....|+.++.++++. ..+...  ....++|+||+ .+|++
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCCe-EEEEE
Confidence            999995 6665321000 00000000 00  00     1135799999988876 555432  56788999999 67766


Q ss_pred             eCC--------CCeEEEEE
Q 022967          236 ETF--------KFRCLKYW  246 (289)
Q Consensus       236 ~~~--------~~~i~~~~  246 (289)
                      ...        ...|+.++
T Consensus       188 ~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEE
T ss_pred             ecccccccccccccEEEeC
Confidence            443        33677777

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.31  E-value=0.47  Score=41.05  Aligned_cols=61  Identities=11%  Similarity=-0.040  Sum_probs=36.9

Q ss_pred             EEEec-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCccc
Q 022967          223 VALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQVFI  286 (289)
Q Consensus       223 l~~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g~i  286 (289)
                      ..+++ .++.+.++....+.|+.||........  ... ....-...++..+||+++.....+|+
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~-~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--IPI-QLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--EEE-ECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--Eec-CCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            34444 445455566667899999976543221  122 12233567899999988777666664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.30  E-value=0.46  Score=40.85  Aligned_cols=50  Identities=18%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             CCEEEEEeCCCCeEEEeeCC-CCCcc-eEEEecCCCEEEEEeCCCCeEEEEEe
Q 022967          197 HGKLLKYDPSLNETSILLDS-LFFAN-GVALSKDEDYLVVCETFKFRCLKYWL  247 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~-~~~p~-gl~~~~d~~~l~v~~~~~~~i~~~~~  247 (289)
                      .+.|..+|..+++......+ ..... .++|+|||++|+-+ ...+.|+.||.
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG-S~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG-QKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE-CTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE-ECCCcEEEecC
Confidence            46677888887775544433 23344 47999999965544 66788888874

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.30  E-value=0.49  Score=43.64  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=40.3

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeecCc----------CccCeEEcCCCcEEEEeCCCceEEEe-CCC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD----------TLLGITTTQENEILVCDADKGLLKVT-EEG  146 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~----------p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g  146 (289)
                      +|.||+.+..++|+.+| .+|+...-......          .. +++++ ++.||+......++.+| .+|
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~-~~~v~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEE-CCEEEEEeCCCEEEEEECCCC
Confidence            78999988756699999 57875422221111          13 66664 67899988767899999 788

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.23  E-value=0.33  Score=45.02  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             CCCEEEEec-CCeEEEEec--CCceEEeeeecC------------cCccCeEEc-CCCc----EEEEeCCCceEEEe-CC
Q 022967           87 NGVLYTATR-DGWIKRLHK--NGTWENWKLIGG------------DTLLGITTT-QENE----ILVCDADKGLLKVT-EE  145 (289)
Q Consensus        87 ~g~l~v~~~-~g~i~~~~~--~g~~~~~~~~~~------------~p~~gl~~d-~~g~----l~v~~~~~~i~~~~-~~  145 (289)
                      +|.||+.+. ++.|+.+|.  +|+.........            ... ++++. .++.    ||+......++.+| .+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            689999887 889999996  776542221111            123 67772 2456    99987667799999 78


Q ss_pred             C-eEEEEeccCCcc--ccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          146 G-VTVLASHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       146 g-~~~~~~~~~~~~--~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      | ...-.. .....  ......-.+ .+|.+|+......            ....+.|+.+|.++|+..
T Consensus       141 G~~~W~~~-~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e------------~g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          141 GETVWKVE-NSDIKVGSTLTIAPYV-VKDKVIIGSSGAE------------LGVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             CCEEEEEE-CCCGGGTCBCCSCCEE-ETTEEEECCBCGG------------GTCCCEEEEEETTTCCEE
T ss_pred             CCEEEeec-CCCCCccceeecCCEE-ECCEEEEEecccc------------cCCCCeEEEEECCCCcEE
Confidence            8 433222 11100  011111122 2678888753211            112467888998877653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.07  E-value=0.23  Score=46.77  Aligned_cols=152  Identities=11%  Similarity=0.012  Sum_probs=85.4

Q ss_pred             ceEEEccCCC-EEEEec-----CCeEEEEec-C------C--ceEEeeeecCcCccCeEEcCCC-cEEEEeCC----Cce
Q 022967           80 EDVCVDRNGV-LYTATR-----DGWIKRLHK-N------G--TWENWKLIGGDTLLGITTTQEN-EILVCDAD----KGL  139 (289)
Q Consensus        80 ~~l~~d~~g~-l~v~~~-----~g~i~~~~~-~------g--~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~----~~i  139 (289)
                      .++.+.++|+ |++...     +..|+.++. +      +  ....+........ . .+.++| .||+....    ..|
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-D-YVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-E-EEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-E-EEeccCCEEEEEECCCCCCCEE
Confidence            3678888887 444332     567888884 3      4  3444433222222 2 344555 46666432    248


Q ss_pred             EEEe-CCC-e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe-EEEe
Q 022967          140 LKVT-EEG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSIL  213 (289)
Q Consensus       140 ~~~~-~~g-~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~  213 (289)
                      +.++ .++ .   +.+......   ....++.+.+++.++++...               .....|+.++..+++ ...+
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~lv~~~~~---------------~g~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEHEK---DVLEWVACVRSNFLVLCYLH---------------DVKNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCCSS---CEEEEEEEETTTEEEEEEEE---------------TTEEEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCCCcccceeccCCCCC---CeEEEEEEEcCCEEEEEEEE---------------CCEEEEEEEECCCCCEEEec
Confidence            8888 444 2   444332111   23456777777778776431               123468899984454 3444


Q ss_pred             eCCCCCcceEEEecCCCEEEEEeCC---CCeEEEEEecCCC
Q 022967          214 LDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGES  251 (289)
Q Consensus       214 ~~~~~~p~gl~~~~d~~~l~v~~~~---~~~i~~~~~~~~~  251 (289)
                      ........+++++++++.++++-+.   -..|+.||+.+.+
T Consensus       376 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          376 PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3333334567788888877766432   3579999986543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.00  E-value=0.27  Score=46.64  Aligned_cols=149  Identities=9%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             ceEEEccCCC-EEEEec-----CCeEEEEe-cCC--c-eEEeeeecCcCccCeEEcCCC-cEEEEeCC----CceEEEe-
Q 022967           80 EDVCVDRNGV-LYTATR-----DGWIKRLH-KNG--T-WENWKLIGGDTLLGITTTQEN-EILVCDAD----KGLLKVT-  143 (289)
Q Consensus        80 ~~l~~d~~g~-l~v~~~-----~g~i~~~~-~~g--~-~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~----~~i~~~~-  143 (289)
                      .++.+.+||+ |++...     ...|+.++ .++  . ...+........ .... ++| .||+....    ..|++++ 
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~-~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFVD-GVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEEE-EETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEEe-ccCCEEEEEECCCCCCCEEEEEeC
Confidence            3577888886 444332     34788888 344  4 454443222222 3333 444 56666432    2488888 


Q ss_pred             CC--C-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCC
Q 022967          144 EE--G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFF  219 (289)
Q Consensus       144 ~~--g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~  219 (289)
                      .+  + .+.+.....    ....++.+. ++.++++...               .....|+.++.+++....+.. +...
T Consensus       349 ~~~~~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~  408 (741)
T 1yr2_A          349 SGSTPRFDTVVPESK----DNLESVGIA-GNRLFASYIH---------------DAKSQVLAFDLDGKPAGAVSLPGIGS  408 (741)
T ss_dssp             SSSSCEEEEEECCCS----SEEEEEEEE-BTEEEEEEEE---------------TTEEEEEEEETTSCEEEECBCSSSCE
T ss_pred             CCCccccEEEecCCC----CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCceeeccCCCCeE
Confidence            44  4 444433211    123455565 5667776421               123578889876555544432 2333


Q ss_pred             cceEEEecCCCEEEEEeCC---CCeEEEEEecCC
Q 022967          220 ANGVALSKDEDYLVVCETF---KFRCLKYWLKGE  250 (289)
Q Consensus       220 p~gl~~~~d~~~l~v~~~~---~~~i~~~~~~~~  250 (289)
                      ..++.+++|++.++++-+.   -..|+.||+.+.
T Consensus       409 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          409 ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            4667888988877765432   257888887643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.99  E-value=0.083  Score=49.74  Aligned_cols=149  Identities=9%  Similarity=-0.015  Sum_probs=83.1

Q ss_pred             eEEEccCCC-EEEEecCC----eEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeC----CCceEEEe-CCC-e-
Q 022967           81 DVCVDRNGV-LYTATRDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA----DKGLLKVT-EEG-V-  147 (289)
Q Consensus        81 ~l~~d~~g~-l~v~~~~g----~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~----~~~i~~~~-~~g-~-  147 (289)
                      ++.+.++|+ |++...++    .|+.++ .++....+........ ...+ ++|.+|+...    ...|++++ .++ . 
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~  308 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY-EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA  308 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE-EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE-EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            567888886 44444333    677776 3556655544333333 4444 3455777643    24588888 444 3 


Q ss_pred             --EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEE
Q 022967          148 --TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVA  224 (289)
Q Consensus       148 --~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~  224 (289)
                        +.+......   ....++.+. ++.++++...               ....+|+.++.+++....+... .....+++
T Consensus       309 ~~~~l~~~~~~---~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~  369 (695)
T 2bkl_A          309 SWKEIVPEDSS---ASLLSVSIV-GGHLSLEYLK---------------DATSEVRVATLKGKPVRTVQLPGVGAASNLM  369 (695)
T ss_dssp             GCEEEECCCSS---CEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred             CCeEEecCCCC---CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence              444432111   223456666 6677776421               1235788888765544444221 23345677


Q ss_pred             EecCCCEEEEEeCC---CCeEEEEEecCC
Q 022967          225 LSKDEDYLVVCETF---KFRCLKYWLKGE  250 (289)
Q Consensus       225 ~~~d~~~l~v~~~~---~~~i~~~~~~~~  250 (289)
                      +++|++.++++-+.   -..|+.||+++.
T Consensus       370 ~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          370 GLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             SCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             cCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            88888877765432   246888887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.93  E-value=0.77  Score=40.07  Aligned_cols=142  Identities=11%  Similarity=0.054  Sum_probs=75.0

Q ss_pred             ceEEEccCCC-EEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEec
Q 022967           80 EDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      .++++  +++ |+++..+|.|..++ .+++...... ...... .++++ ++.++.+..+..+..++ .++  ...... 
T Consensus       177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-  251 (435)
T 1p22_A          177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRV-  251 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEE-
T ss_pred             EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeE-
Confidence            34444  444 44777888899998 4555432222 223334 67775 34555555555577777 444  321111 


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC-CCCCcceEEEecCCCEE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYL  232 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~~~p~gl~~~~d~~~l  232 (289)
                      ..+. ......+.+  +|...++..                 ..+.|..+|..+++...... .......+++  +++.+
T Consensus       252 ~~~~-~~~v~~~~~--~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  309 (435)
T 1p22_A          252 LVGH-RAAVNVVDF--DDKYIVSAS-----------------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLV  309 (435)
T ss_dssp             ECCC-SSCEEEEEE--ETTEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEE
T ss_pred             ecCC-CCcEEEEEe--CCCEEEEEe-----------------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEE
Confidence            1111 113345555  554444322                 24678888887665543332 2233344555  46655


Q ss_pred             EEEeCCCCeEEEEEecC
Q 022967          233 VVCETFKFRCLKYWLKG  249 (289)
Q Consensus       233 ~v~~~~~~~i~~~~~~~  249 (289)
                      +.+ ...+.|..||+..
T Consensus       310 ~~g-~~dg~i~iwd~~~  325 (435)
T 1p22_A          310 VSG-SSDNTIRLWDIEC  325 (435)
T ss_dssp             EEE-ETTSCEEEEETTT
T ss_pred             EEE-eCCCeEEEEECCC
Confidence            555 4568899999864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.92  E-value=1.1  Score=41.60  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=47.0

Q ss_pred             CCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCC
Q 022967          196 PHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  274 (289)
                      ..+.|+.+|+.+++..--. .+...-.+ .+...++.+|++ +..+.|+.||.++.+..............|  +....+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~g-t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P--~~y~~~  526 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYG-TLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHK  526 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEET
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEE-CCCCeEEEEECCCCCEEEEeeCCCCcEecc--EEEEeC
Confidence            3478999999988754222 12222223 223356668876 456889999976543322111111111222  444467


Q ss_pred             CCEEEEEeCc
Q 022967          275 GSFWIAILQV  284 (289)
Q Consensus       275 G~lwv~~~~g  284 (289)
                      |..||+...|
T Consensus       527 G~qyv~~~~G  536 (599)
T 1w6s_A          527 GTQYVAIYYG  536 (599)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEcc
Confidence            8999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.46  E-value=1.2  Score=38.88  Aligned_cols=136  Identities=15%  Similarity=0.092  Sum_probs=72.2

Q ss_pred             ccCCCE-EEEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC--eEEEEeccCCc
Q 022967           85 DRNGVL-YTATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGS  157 (289)
Q Consensus        85 d~~g~l-~v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~  157 (289)
                      ..+|+. .++..+|.|..++ .+++....... .+... .+++  +++ |+.+..+..|..++ .++  ...+...    
T Consensus       140 ~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h----  212 (435)
T 1p22_A          140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH----  212 (435)
T ss_dssp             ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC----
T ss_pred             EECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC----
Confidence            335554 4777899999999 45554433322 23334 6777  444 44445445577777 556  3333211    


Q ss_pred             cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE---EeeC-CCCCcceEEEecCCCEEE
Q 022967          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLD-SLFFANGVALSKDEDYLV  233 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~-~~~~p~gl~~~~d~~~l~  233 (289)
                       ......+.+++ +.++.+..                  .+.|..+|..+++..   .... .......+++  +++.++
T Consensus       213 -~~~v~~l~~~~-~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  270 (435)
T 1p22_A          213 -CEAVLHLRFNN-GMMVTCSK------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV  270 (435)
T ss_dssp             -CSCEEEEECCT-TEEEEEET------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred             -CCcEEEEEEcC-CEEEEeeC------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence             12344555542 23333322                  356777776654321   1222 2223345555  677666


Q ss_pred             EEeCCCCeEEEEEecCC
Q 022967          234 VCETFKFRCLKYWLKGE  250 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~  250 (289)
                      .+ ...+.|..||+...
T Consensus       271 s~-~~dg~i~vwd~~~~  286 (435)
T 1p22_A          271 SA-SGDRTIKVWNTSTC  286 (435)
T ss_dssp             EE-ETTSEEEEEETTTC
T ss_pred             EE-eCCCeEEEEECCcC
Confidence            65 44688999987643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=95.16  E-value=1.4  Score=42.23  Aligned_cols=150  Identities=10%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CCcceEEEcc--CCCEEEEecCCeEEEEecCCc-eEEeeeec------CcCccCeEEcCC--CcEEEEeCC------Cce
Q 022967           77 NGPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG------GDTLLGITTTQE--NEILVCDAD------KGL  139 (289)
Q Consensus        77 ~~p~~l~~d~--~g~l~v~~~~g~i~~~~~~g~-~~~~~~~~------~~p~~gl~~d~~--g~l~v~~~~------~~i  139 (289)
                      ....+|++++  .+.+|++...+.|++-+..|+ ++.+....      ......|++|+.  +.+|++...      .+|
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence            3456788887  367899888788988875553 54433211      122227888864  468887532      356


Q ss_pred             EEEeCCC--eEEEEeccCCc---cc-cCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          140 LKVTEEG--VTVLASHVNGS---RI-NLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       140 ~~~~~~g--~~~~~~~~~~~---~~-~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ++-++.|  .+.+.......   .. .....|+++|.  +.+|+...                  .+.|++-+-.+...+
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~------------------~~gl~~S~DgG~TW~  156 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSDRAKTWT  156 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS------------------SSCEEEESSTTSSCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec------------------cCCEEEECCCCcccC
Confidence            6665556  55543211100   00 12346888873  46887642                  145766543333455


Q ss_pred             EeeCC------CCCcceEEEec-CCCEEEEEeCCCCeEEE
Q 022967          212 ILLDS------LFFANGVALSK-DEDYLVVCETFKFRCLK  244 (289)
Q Consensus       212 ~~~~~------~~~p~gl~~~~-d~~~l~v~~~~~~~i~~  244 (289)
                      .+...      ......++++| +.+.+|++......|++
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            44321      01223466776 45578887643355654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.94  E-value=1.2  Score=36.27  Aligned_cols=144  Identities=14%  Similarity=0.025  Sum_probs=81.1

Q ss_pred             ceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeee--cCcCccCeEEcCCCcEEEEeCCC-ceEEEe-CCC--eEEEEe
Q 022967           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI--GGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~--~~~p~~gl~~d~~g~l~v~~~~~-~i~~~~-~~g--~~~~~~  152 (289)
                      ..|+..+++.|-++ .++.|..++ .+|+.......  .....+.+++.++|+++++.... .+..++ .++  +..+..
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            44778777644455 478899999 56765543322  22223389999999876654444 455566 556  333221


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe--EEEeeCCCCCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~~~~~~~~p~gl~~~~d~~  230 (289)
                             +...-..+..++.+.++...                 .+.+..++...+.  ...+.........++++++++
T Consensus       108 -------h~~~~~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A          108 -------HSARVGSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             -------CSSCEEEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             -------ccceEEEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence                   11222344455555444322                 2445445444322  222333344556778889998


Q ss_pred             EEEEEeCCCCeEEEEEecC
Q 022967          231 YLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~  249 (289)
                      .++.+ ...+.|..||+..
T Consensus       164 ~l~s~-~~d~~i~iwd~~~  181 (318)
T 4ggc_A          164 HLASG-GNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEE-ETTSCEEEEESSC
T ss_pred             EEEEE-ecCcceeEEECCC
Confidence            66555 4557899998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=94.88  E-value=1.9  Score=37.98  Aligned_cols=160  Identities=10%  Similarity=-0.055  Sum_probs=85.3

Q ss_pred             CcceEEEccC-CCEE-EEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCc-EEEEeCCCceEEEeCCC--eEEE
Q 022967           78 GPEDVCVDRN-GVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENE-ILVCDADKGLLKVTEEG--VTVL  150 (289)
Q Consensus        78 ~p~~l~~d~~-g~l~-v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~~~g--~~~~  150 (289)
                      ...++++.++ ++++ ++..+|.|..|| .++....... ...... .++++++|+ |+++...+.|..++..+  ...+
T Consensus       151 ~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~-~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~  229 (434)
T 2oit_A          151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT-SVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVI  229 (434)
T ss_dssp             SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE-EEEECTTSSCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee-EEEEcCCCCEEEEEcCCCcEEEEccCCcccccc
Confidence            4667899986 6766 567889999999 4443221111 123455 899999986 44555545677777445  3332


Q ss_pred             EeccCCc--cccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC------eEEEeeC------C
Q 022967          151 ASHVNGS--RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN------ETSILLD------S  216 (289)
Q Consensus       151 ~~~~~~~--~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~------~~~~~~~------~  216 (289)
                      .......  ......++.+++++.+.++.... -|       ..+  ....+..++..+.      .+..+.+      +
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~-dg-------~~~--~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~  299 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA-DG-------TLE--TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT  299 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEETTEEEEEEEET-TC-------CSS--SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS
T ss_pred             cCCcccCCCCceeEEEEEEecCceEEEEEccC-CC-------ccC--CCCceEEEEeccCCCCCCcceEecccCCCCCCC
Confidence            2111100  01145577888877655432110 00       000  0122444443322      1122211      2


Q ss_pred             CCCcceEEEe--cCCCEEEEEeCCCCeEEEEEecC
Q 022967          217 LFFANGVALS--KDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       217 ~~~p~gl~~~--~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      .+.| .+.+.  +|.+.+|++.+....|..+...+
T Consensus       300 ~r~~-~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          300 ERQH-HYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             SSCC-CEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             CcCc-ceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            2223 34444  78889999999888887777654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.18  E-value=2.4  Score=36.33  Aligned_cols=183  Identities=9%  Similarity=-0.002  Sum_probs=85.5

Q ss_pred             CCCEEEEe---cCCeEEEEe--cCCceEEee-eecCcCccCeEEcC---CCcEEEEeCC-CceEEEe-CCC--eEEEEec
Q 022967           87 NGVLYTAT---RDGWIKRLH--KNGTWENWK-LIGGDTLLGITTTQ---ENEILVCDAD-KGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        87 ~g~l~v~~---~~g~i~~~~--~~g~~~~~~-~~~~~p~~gl~~d~---~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~  153 (289)
                      +|++..+.   .++.|..++  ++|+...-. ....... .++|.+   ++.++++... +.|..+| ++|  +..+...
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            45555443   256666665  556543321 1112222 445544   6788887544 4455567 667  5555321


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-----CCCCCcceEEEecC
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----DSLFFANGVALSKD  228 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-----~~~~~p~gl~~~~d  228 (289)
                        .........+++.|||.+.++.... ..    ...+..+...+.|..+|+++++...+.     ++... .-+..+.+
T Consensus       223 --~~~v~~v~~vafSpdG~~lvs~s~~-~~----~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s  294 (356)
T 2w18_A          223 --DSYQASVCHKAYSEMGLLFIVLSHP-CA----KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK  294 (356)
T ss_dssp             --C---CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE
T ss_pred             --CcceeeeEEEEECCCCCEEEEeccC-CC----cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC
Confidence              1112245567899999876653210 00    001222334456667788877643221     11110 11122222


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC-ceeeCCCCCEEEEEe
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPD-NIKLAPDGSFWIAIL  282 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G~lwv~~~  282 (289)
                      +. +.++-...+.|..||+...+..  ..+. .....+. .+++.++|.+.++..
T Consensus       295 g~-~lASgS~DgTIkIWDl~tGk~l--~tL~-gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          295 DH-CAAAILTSGTIAIWDLLLGQCT--ALLP-PVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             TT-EEEEEETTSCEEEEETTTCSEE--EEEC-CC--CCCCEEEECSSSSEEEEEC
T ss_pred             CC-EEEEEcCCCcEEEEECCCCcEE--EEec-CCCCCeEEEEEECCCCCEEEEEE
Confidence            33 4555555688999998754321  1121 1111222 367888887655543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=94.15  E-value=0.73  Score=43.29  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             ceEEEeCCC-eEEEEec--cCCccccCccceEEcCCCc-E-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE
Q 022967          138 GLLKVTEEG-VTVLASH--VNGSRINLADDLIAATDGS-I-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (289)
Q Consensus       138 ~i~~~~~~g-~~~~~~~--~~~~~~~~~~~l~~~~dG~-l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  212 (289)
                      .++|...++ .+++.+.  ..........++.++|||+ | |..+..              +.....|+.+|.++++...
T Consensus       104 ~~~r~~~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~  169 (693)
T 3iuj_A          104 VLWRQQEGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLE  169 (693)
T ss_dssp             EEEEECTTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEE
T ss_pred             EEEEeCCCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCc
Confidence            355644444 5555432  1222223566789999996 3 333321              1112468899998887543


Q ss_pred             eeCCCCCcceEEEecCCCEEEEEeCC------------CCeEEEEEecCC
Q 022967          213 LLDSLFFANGVALSKDEDYLVVCETF------------KFRCLKYWLKGE  250 (289)
Q Consensus       213 ~~~~~~~p~gl~~~~d~~~l~v~~~~------------~~~i~~~~~~~~  250 (289)
                      .........+++|+ |++.|+++...            ..+|+++++.+.
T Consensus       170 ~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~  218 (693)
T 3iuj_A          170 TPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA  218 (693)
T ss_dssp             EEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSC
T ss_pred             cccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCC
Confidence            21111112567999 99988887543            256888887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.87  E-value=2.7  Score=39.95  Aligned_cols=146  Identities=12%  Similarity=0.055  Sum_probs=77.3

Q ss_pred             ceEEEc-cCCCE-E-EEecCC----eEEEEe-cCC-ce--EEeeeecCcCccCeEEcCCCc-EEEEeCC-----CceEEE
Q 022967           80 EDVCVD-RNGVL-Y-TATRDG----WIKRLH-KNG-TW--ENWKLIGGDTLLGITTTQENE-ILVCDAD-----KGLLKV  142 (289)
Q Consensus        80 ~~l~~d-~~g~l-~-v~~~~g----~i~~~~-~~g-~~--~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-----~~i~~~  142 (289)
                      ....+. |||+. . +.+..|    .|+.++ .+| +.  ..+.   .... ++++.+||+ |+++...     ..|++.
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~-~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNG-EIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECS-CCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---Ccee-eEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            346788 88873 3 333333    488888 344 31  1111   1134 888988884 5554321     247777


Q ss_pred             e-CCC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC--eE--EEee
Q 022967          143 T-EEG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ET--SILL  214 (289)
Q Consensus       143 ~-~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~--~~--~~~~  214 (289)
                      + .++ . ..++.......  ...++.+++||+ |+++....               ....|+.+|.+++  +.  ..+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~--~~~~~~~SpDg~~l~~~~~~~---------------~~~~l~~~d~~~~~~~~~~~~l~  315 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPL--FSAFMYKAADTNTLCIGSQSP---------------ETAEVHLLDLRKGNAHNTLEIVR  315 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTT--CEEEEEECTTSSEEEEEEECS---------------SCEEEEEEESSSCTTCCCEEESS
T ss_pred             ECCCCchhcEEEEecCCCc--eEEEEEECCCCCEEEEEecCC---------------CCceEEEEECCCCCCCceeEEee
Confidence            7 444 2 22221111111  234678999996 55553220               2346888988754  34  4443


Q ss_pred             CCCCCcceEEEecC---CCEEEEEe-C---CCCeEEEEEecC
Q 022967          215 DSLFFANGVALSKD---EDYLVVCE-T---FKFRCLKYWLKG  249 (289)
Q Consensus       215 ~~~~~p~gl~~~~d---~~~l~v~~-~---~~~~i~~~~~~~  249 (289)
                      ....   +..++++   ++.||+.. .   .+.+|+++++++
T Consensus       316 ~~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          316 PREK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CCCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             cCCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            3322   2223333   77676653 3   346899998764

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=93.68  E-value=5  Score=38.20  Aligned_cols=149  Identities=12%  Similarity=0.027  Sum_probs=80.1

Q ss_pred             CCcceEEEccC--CCEEEEecCCeEEEEecCCc-eEEeeeec------------CcCccCeEEcC--CCcEEEEeC----
Q 022967           77 NGPEDVCVDRN--GVLYTATRDGWIKRLHKNGT-WENWKLIG------------GDTLLGITTTQ--ENEILVCDA----  135 (289)
Q Consensus        77 ~~p~~l~~d~~--g~l~v~~~~g~i~~~~~~g~-~~~~~~~~------------~~p~~gl~~d~--~g~l~v~~~----  135 (289)
                      .+-.+|+++|.  +.+|++...|.|++-...|+ ++......            .... .|++|+  .+.+|++..    
T Consensus        21 g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~~~~   99 (763)
T 3a0f_A           21 GFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGDYVQ   99 (763)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECSCTT
T ss_pred             CceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEeccccc
Confidence            35567888883  46888887788888875453 44433211            1123 677876  357898753    


Q ss_pred             ---CCceEEEeCCC--eEEEEeccCC--c-ccc-CccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEe
Q 022967          136 ---DKGLLKVTEEG--VTVLASHVNG--S-RIN-LADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (289)
Q Consensus       136 ---~~~i~~~~~~g--~~~~~~~~~~--~-~~~-~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  204 (289)
                         ..+|++-++.|  .+.+.....-  . .-+ ....|+++|.  +.+|+...                  .+.|++=+
T Consensus       100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------------~~~l~~S~  161 (763)
T 3a0f_A          100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR------------------TQGLWRST  161 (763)
T ss_dssp             TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS------------------SSCEEEES
T ss_pred             CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC------------------CCcEEEEC
Confidence               24566666556  5554321110  0 001 1136888874  67888742                  14566653


Q ss_pred             CCCCeEEEeeCC---C---CCcceEEEecC-CCEEEEEeCCCCeEEE
Q 022967          205 PSLNETSILLDS---L---FFANGVALSKD-EDYLVVCETFKFRCLK  244 (289)
Q Consensus       205 ~~~~~~~~~~~~---~---~~p~gl~~~~d-~~~l~v~~~~~~~i~~  244 (289)
                      -.+...+.+...   .   .....|+++|. .+.+|++......|++
T Consensus       162 DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~  208 (763)
T 3a0f_A          162 DRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV  208 (763)
T ss_dssp             STTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred             CCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence            333344444311   0   11235677763 3458887554323544

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.72  E-value=9.3  Score=36.34  Aligned_cols=183  Identities=13%  Similarity=0.095  Sum_probs=89.6

Q ss_pred             ceEEEccC--CCEEEEec--CCeEEEEecCC-ceEEeeeecCcCccCeEEcC--CCcEEEEeCCCceEEEeCCC--eEEE
Q 022967           80 EDVCVDRN--GVLYTATR--DGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ--ENEILVCDADKGLLKVTEEG--VTVL  150 (289)
Q Consensus        80 ~~l~~d~~--g~l~v~~~--~g~i~~~~~~g-~~~~~~~~~~~p~~gl~~d~--~g~l~v~~~~~~i~~~~~~g--~~~~  150 (289)
                      ..++++++  ..+|++..  ++.|++-...| .++.+......-. .++.++  .+.+|+++ ..++++-...|  .+.+
T Consensus       547 ~~i~v~~~~~~~~~~~~~~~~~~v~~S~D~G~tW~~~~~l~~~~~-~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~  624 (763)
T 3a0f_A          547 GTIAVGADGKTFVWSPSKADGKGPYTSSDYGKTWTAPSGLSKQTT-GIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKK  624 (763)
T ss_dssp             CEEEECTTSSCEEEECSSCCSSCCEEESSTTSCCBCCBSCCCCCS-CEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEE
T ss_pred             ceEEEecCCCcEEEEecccCCCceEEeCCCCCCCeecCCCCCCcc-eEEEeccCCCEEEEEc-CCCEEEEeCCCcCcccc
Confidence            34677763  35787663  44565554334 3333311111113 577765  34688886 35566655555  5555


Q ss_pred             EeccCCccccCccceEEcC--CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce---EEE
Q 022967          151 ASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG---VAL  225 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~--dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g---l~~  225 (289)
                      ....+....... -|.+.+  ++.||++...                  +.||+-+-.+...+.+. ++.....   +.|
T Consensus       625 ~~~lp~~~~~~~-~i~~~~~~~~~l~~~~~~------------------~~l~~S~D~G~tW~~~~-~~~~~~~~~~~~~  684 (763)
T 3a0f_A          625 GNGLPCCWTYTG-TPVTSNLRAGELWVSVKG------------------VGIYHSTDFGNTFTALA-GSGSSLNPAVFSI  684 (763)
T ss_dssp             CBTSCCSSCCCE-EEEECSSSTTCEEEEETT------------------TEEEEESSTTSBCEECT-TBTTTBEEEEEEE
T ss_pred             ccCCCcccCccc-cEEECCCCCCcEEEEcCC------------------CeEEEEcCCCCCceEcc-CCCcccccceeEE
Confidence            332220000111 166666  5789997632                  46877754444565553 2221111   222


Q ss_pred             ----e-cCCCEEEEEe--C--CCCeEEEEEecCCCCcceeeeeccCCCCC--CceeeCC--CCCEEEEEeCcccc
Q 022967          226 ----S-KDEDYLVVCE--T--FKFRCLKYWLKGESKEQTEIFVENLPGGP--DNIKLAP--DGSFWIAILQVFIS  287 (289)
Q Consensus       226 ----~-~d~~~l~v~~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~--~G~lwv~~~~g~i~  287 (289)
                          . ++...||++-  .  ....|++=+-.|.+-   +.+.+....+|  ..|+.|.  .++||+++.+.|+.
T Consensus       685 g~~~~~~~~~~l~~~G~~~~~~~~gl~~S~D~G~tW---~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T~GrGi~  756 (763)
T 3a0f_A          685 GAPQTPNATETLFLWGIPSASQPEGLYMSTDNGGLW---TRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRGII  756 (763)
T ss_dssp             ECCSSTTSSCEEEEEEECSTTSCSEEEEESSTTSCC---EECSCTTCCTBCEEEEEECTTSTTEEEEEEBSSCEE
T ss_pred             eeecCCCCCceEEEEEEcccCCCcEEEEeCCCCCCc---EeccCccccCCCcceEEeCCCCCCEEEEeCCCCeEE
Confidence                2 2345688764  1  235666543223222   12211111122  2578885  35799999887763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.26  E-value=0.93  Score=38.71  Aligned_cols=59  Identities=17%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeeec--CcCccCeE---EcCCCcEEEEe--CCCceEEEe-CCC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG--GDTLLGIT---TTQENEILVCD--ADKGLLKVT-EEG  146 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~--~~p~~gl~---~d~~g~l~v~~--~~~~i~~~~-~~g  146 (289)
                      +|.+|+++.+|.|+.++ .+|+........  ..+. ...   ...++.+|+..  ....++.++ .+|
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence            46888999999999999 677654332222  1111 110   11245677664  235588888 566

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.21  E-value=4.2  Score=37.78  Aligned_cols=112  Identities=12%  Similarity=-0.011  Sum_probs=65.8

Q ss_pred             CeEEcC-CCcEEEEeCC------------CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcc
Q 022967          121 GITTTQ-ENEILVCDAD------------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH  185 (289)
Q Consensus       121 gl~~d~-~g~l~v~~~~------------~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~  185 (289)
                      ..++.+ +|+||+....            ..++.+| ..+ .+.+... +.....+..+.++..+|+||+.-+.      
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g~lyv~GG~------  262 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNGQIVVTGGN------  262 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTSCEEEECSS------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc-CCCCCCccccccCCCCCCEEEeCCC------
Confidence            555555 7889987311            1367777 455 4332211 1111223446777889999998543      


Q ss_pred             ccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCCCEEEEEeC-C-----CCeEEEEEecCC
Q 022967          186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCET-F-----KFRCLKYWLKGE  250 (289)
Q Consensus       186 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~~~l~v~~~-~-----~~~i~~~~~~~~  250 (289)
                                ....+++||+.+++.+.+..-  -+.-...++.++++ +|+.-. .     ...+.+||+...
T Consensus       263 ----------~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          263 ----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             ----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ----------CCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCC
Confidence                      123689999998888766421  22223455666787 777633 1     156888987643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=90.83  E-value=10  Score=35.18  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             EEEccCCCEEEEe--cCCeEEEEe-cCCceEEeeeec-CcC-ccCeEEcCCCcEEEEeCC-------CceEEEe-CCC-e
Q 022967           82 VCVDRNGVLYTAT--RDGWIKRLH-KNGTWENWKLIG-GDT-LLGITTTQENEILVCDAD-------KGLLKVT-EEG-V  147 (289)
Q Consensus        82 l~~d~~g~l~v~~--~~g~i~~~~-~~g~~~~~~~~~-~~p-~~gl~~d~~g~l~v~~~~-------~~i~~~~-~~g-~  147 (289)
                      +++..+|.||+.-  ....++++| ..+++....... .+- + +.++-++|+|||....       ..+.++| ..+ .
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            5666789999543  345799998 445555543211 121 2 4555568899997531       3478888 555 5


Q ss_pred             EEEEeccCCccccCc-cceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          148 TVLASHVNGSRINLA-DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~-~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      +.+... ...++... ...++..++++|+.....  +      .++.......+..||++++...
T Consensus       327 ~~~~~~-~~~p~~~~~~~~~~~~~~~iyv~Gg~~--g------~~~~~~~~~~v~~yd~~~~~w~  382 (656)
T 1k3i_A          327 TSLPNA-KVNPMLTADKQGLYRSDNHAWLFGWKK--G------SVFQAGPSTAMNWYYTSGSGDV  382 (656)
T ss_dssp             EEETTS-CSGGGCCCCTTGGGTTTCSCCEEECGG--G------CEEECCSSSEEEEEECSTTCEE
T ss_pred             eeCCCc-cccccccccccceeecCCceEEEECCC--C------cEEEecCccceeeeecCCccee
Confidence            554210 00111111 011223466676654320  0      1111122357889999876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=89.14  E-value=1.9  Score=40.89  Aligned_cols=75  Identities=12%  Similarity=0.014  Sum_probs=45.4

Q ss_pred             CccceEEc-CCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCCCC-CcceEEEecCCCEEEEEe
Q 022967          161 LADDLIAA-TDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLF-FANGVALSKDEDYLVVCE  236 (289)
Q Consensus       161 ~~~~l~~~-~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~-~p~gl~~~~d~~~l~v~~  236 (289)
                      ...+..++ |||+ |.++...             .+.....|+.+|.+++ +.  +.+.+. ...+++|+||++.|+++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence            34577999 9996 5444321             0111235999999877 52  111111 135789999998887765


Q ss_pred             CCC----CeEEEEEecCC
Q 022967          237 TFK----FRCLKYWLKGE  250 (289)
Q Consensus       237 ~~~----~~i~~~~~~~~  250 (289)
                      ...    .+|+++++.+.
T Consensus       240 ~d~~~~~~~v~~~~lgt~  257 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKL  257 (751)
T ss_dssp             ECTTCCEEEEEEEETTSC
T ss_pred             ECCCCCCCEEEEEECCCC
Confidence            421    36888887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.85  E-value=1.2  Score=40.60  Aligned_cols=84  Identities=14%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             EEEEEeCCC-----CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC------CCC-cceeeee--ccCCC
Q 022967          199 KLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG------ESK-EQTEIFV--ENLPG  264 (289)
Q Consensus       199 ~i~~~~~~~-----~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~------~~~-~~~~~~~--~~~~~  264 (289)
                      ++-.+|...     ..+..+..-...|.|+.++|||++++++.-...++.+|+.+.      .++ .-.....  ..+.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466677654     234445555678999999999999999999999999999752      122 1111111  12334


Q ss_pred             CCCceeeCCCCCEEEEEe
Q 022967          265 GPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       265 ~p~~i~~d~~G~lwv~~~  282 (289)
                      .|.-.++|.+|+.|.+..
T Consensus       379 GPlHt~Fd~~G~aYTtlf  396 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLF  396 (638)
T ss_dssp             CEEEEEECSSSEEEEEET
T ss_pred             cccEEEECCCCceEeeee
Confidence            688899999999998864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=88.70  E-value=4.4  Score=34.71  Aligned_cols=72  Identities=8%  Similarity=-0.067  Sum_probs=46.2

Q ss_pred             CccceEEcC--------CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC-eEEEeeCCCCCcceEEEecCCCE
Q 022967          161 LADDLIAAT--------DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFANGVALSKDEDY  231 (289)
Q Consensus       161 ~~~~l~~~~--------dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~~~p~gl~~~~d~~~  231 (289)
                      ..+++++.|        ||++.++...                 .+.|..+|..++ ....+...-.....++|+|++..
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~-----------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~  200 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGD-----------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPN  200 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEET-----------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEE
T ss_pred             ceEEEEEccccccccCCCCCEEEEEEC-----------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCc
Confidence            467888876        7777776532                 344555554333 33333333445578999998875


Q ss_pred             EEEEeCCCCeEEEEEecC
Q 022967          232 LVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~  249 (289)
                      ++++....+.|..||+..
T Consensus       201 ~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          201 QLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEETTSEEEEEETTC
T ss_pred             eEEecCCCCEEEEEECCC
Confidence            666656678899999764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=88.35  E-value=12  Score=32.45  Aligned_cols=141  Identities=12%  Similarity=0.062  Sum_probs=76.4

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCc---------eEE--eeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGT---------WEN--WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~---------~~~--~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-  143 (289)
                      .....+++.+.+.++++....++..++ .+..         ++.  .....+ +. .++| .+..|+++ .+.+|..++ 
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f-d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF-HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE-ETTEEEEE-ESSEEEEEES
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE-CCCEEEEE-cCCcEEEEEc
Confidence            345668999877776544434566676 1111         111  122233 66 8999 33457777 446788887 


Q ss_pred             CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcc
Q 022967          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (289)
Q Consensus       144 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~  221 (289)
                      .+-  ...... ...    ...++...+. ++.+..                  ..|.|+.+|.+++......   ....
T Consensus       114 ~sl~~~~~~~~-~~~----~v~~i~~~~p-~~av~~------------------~dG~L~v~dl~~~~~~~~~---~~Vs  166 (388)
T 1xip_A          114 EELSEFRTVTS-FEK----PVFQLKNVNN-TLVILN------------------SVNDLSALDLRTKSTKQLA---QNVT  166 (388)
T ss_dssp             SSTTCEEEEEE-CSS----CEEEEEECSS-EEEEEE------------------TTSEEEEEETTTCCEEEEE---ESEE
T ss_pred             hhhhccCccce-eec----ceeeEEecCC-CEEEEE------------------CCCCEEEEEccCCcccccc---CCce
Confidence            322  221111 110    1223332222 233332                  2477888887766554432   2456


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      .++|+|+|  +.++ ..++.+.+|+.++..
T Consensus       167 ~v~WSpkG--~~vg-~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          167 SFDVTNSQ--LAVL-LKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEEECSSE--EEEE-ETTSCEEEEEEETTE
T ss_pred             EEEEcCCc--eEEE-EcCCcEEEEcCCCcc
Confidence            78999999  4444 345788888877643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=87.71  E-value=13  Score=32.19  Aligned_cols=126  Identities=9%  Similarity=0.111  Sum_probs=73.0

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEecCC--ceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEec
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~  153 (289)
                      .+..|++ .+..|+++ .++.|..|+...  +............ .+.+-.. ++.++.....++.++ +++ ...+.  
T Consensus        89 ~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~--  162 (388)
T 1xip_A           89 DVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA--  162 (388)
T ss_dssp             TEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             CeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc--
Confidence            3788899 34456677 778899998321  1111111111122 4444322 366666556677777 556 43322  


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE---EEe------eC---CCCCcc
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SIL------LD---SLFFAN  221 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~------~~---~~~~p~  221 (289)
                            .....+++.|+| +.++..                  .|.+..|++++++.   ..+      .+   +.....
T Consensus       163 ------~~Vs~v~WSpkG-~~vg~~------------------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~  217 (388)
T 1xip_A          163 ------QNVTSFDVTNSQ-LAVLLK------------------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPL  217 (388)
T ss_dssp             ------ESEEEEEECSSE-EEEEET------------------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEE
T ss_pred             ------CCceEEEEcCCc-eEEEEc------------------CCcEEEEcCCCccccccceecCCcccccccCCCeeEE
Confidence                  246789999999 555532                  36677778877663   233      11   235567


Q ss_pred             eEEEecCCCEEEE
Q 022967          222 GVALSKDEDYLVV  234 (289)
Q Consensus       222 gl~~~~d~~~l~v  234 (289)
                      .|.|.+++.++.+
T Consensus       218 sI~wl~~~~flv~  230 (388)
T 1xip_A          218 SVTILSPQDFLAV  230 (388)
T ss_dssp             EEEESSSSEEEEE
T ss_pred             EEEEecCCeEEEE
Confidence            8899888775554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.71  E-value=21  Score=33.48  Aligned_cols=147  Identities=10%  Similarity=0.060  Sum_probs=83.8

Q ss_pred             cCCCEEE-Eec----CCeEEEEe-cCCceEEee-e------ecCc-CccCeEEcC-CCcEEEEeCC-------CceEEEe
Q 022967           86 RNGVLYT-ATR----DGWIKRLH-KNGTWENWK-L------IGGD-TLLGITTTQ-ENEILVCDAD-------KGLLKVT  143 (289)
Q Consensus        86 ~~g~l~v-~~~----~g~i~~~~-~~g~~~~~~-~------~~~~-p~~gl~~d~-~g~l~v~~~~-------~~i~~~~  143 (289)
                      -++.||+ +-.    .+.+++++ .++++.... .      ...+ -+ +++... +|.|||....       +.++++|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            4678885 321    24588888 566777665 2      1111 13 444433 7789987321       3478888


Q ss_pred             -CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-----
Q 022967          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----  216 (289)
Q Consensus       144 -~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-----  216 (289)
                       ... .+.+.. .+.  -..-...++-.+|.||+.-+..               ..+.+++||+.+++++.+...     
T Consensus       475 ~~t~~W~~~~~-~p~--~R~~h~~~~~~~~~iyv~GG~~---------------~~~~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          475 MKTREWSMIKS-LSH--TRFRHSACSLPDGNVLILGGVT---------------EGPAMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             TTTTEEEECCC-CSB--CCBSCEEEECTTSCEEEECCBC---------------SSCSEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCCCcEEECCC-CCC--CcccceEEEEcCCEEEEECCCC---------------CCCCEEEEECCCCceEEccCCCCCCC
Confidence             555 554422 111  1122344443588999975421               111699999999888876531     


Q ss_pred             -CCCcceEEEecCCCEEEEEeCC-------CCeEEEEEecCCC
Q 022967          217 -LFFANGVALSKDEDYLVVCETF-------KFRCLKYWLKGES  251 (289)
Q Consensus       217 -~~~p~gl~~~~d~~~l~v~~~~-------~~~i~~~~~~~~~  251 (289)
                       -.....++++.+.+.+|+....       .+.+++||+....
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence             1122235556554568887432       3579999987654

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=86.58  E-value=15  Score=34.99  Aligned_cols=115  Identities=9%  Similarity=0.049  Sum_probs=64.6

Q ss_pred             CcCccCeEEcCC--CcEEEEeCCCceEEEeCCC--eEEEEeccCCc--cccCccceEEcCC--CcEEEeeCCCccCcccc
Q 022967          116 GDTLLGITTTQE--NEILVCDADKGLLKVTEEG--VTVLASHVNGS--RINLADDLIAATD--GSIYFSVASTKFGLHNW  187 (289)
Q Consensus       116 ~~p~~gl~~d~~--g~l~v~~~~~~i~~~~~~g--~~~~~~~~~~~--~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~  187 (289)
                      ++.. +|++++.  +.+|++....+|++-++.|  .+.+.......  ......+|+++|.  +.+|++.....      
T Consensus        15 g~i~-~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~------   87 (789)
T 1sqj_A           15 GYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV------   87 (789)
T ss_dssp             SCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT------
T ss_pred             CcEE-EEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC------
Confidence            3445 8888864  5788887667899888666  55432211100  1234678899984  57888753200      


Q ss_pred             ccccceecCCCEEEEEeCCCCeEEEeeCCCC---------CcceEEEecC-CCEEEEEeCCCCeEEE
Q 022967          188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLF---------FANGVALSKD-EDYLVVCETFKFRCLK  244 (289)
Q Consensus       188 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~---------~p~gl~~~~d-~~~l~v~~~~~~~i~~  244 (289)
                            ....+.|++-+-.+...+.+...+.         ....++++|. .+.+|+.. ....|++
T Consensus        88 ------~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~-~~~gl~~  147 (789)
T 1sqj_A           88 ------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK  147 (789)
T ss_dssp             ------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC-SSSCEEE
T ss_pred             ------CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe-ccCCEEE
Confidence                  0001567766544445555533211         1245888874 45677764 2355664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.14  E-value=14  Score=30.02  Aligned_cols=144  Identities=19%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             CCCEEE-Eec-----CCeEEEEe-cCCc---eEEeeeec-CcCccCeEEcCCCcEEEEeC------CCceEEEe-CCC-e
Q 022967           87 NGVLYT-ATR-----DGWIKRLH-KNGT---WENWKLIG-GDTLLGITTTQENEILVCDA------DKGLLKVT-EEG-V  147 (289)
Q Consensus        87 ~g~l~v-~~~-----~g~i~~~~-~~g~---~~~~~~~~-~~p~~gl~~d~~g~l~v~~~------~~~i~~~~-~~g-~  147 (289)
                      ++.||+ +-.     ...+++++ .+++   ++...... .+...+++. -++.||+...      .+.++++| ... .
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            678884 332     24688998 4455   66553321 111103333 3678998742      13488888 555 5


Q ss_pred             EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc---ceEE
Q 022967          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVA  224 (289)
Q Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p---~gl~  224 (289)
                      +.+... +...  ....+++ -++.||+.-+...            ......+++||+.+++.+.+.. ...+   ..++
T Consensus       141 ~~~~~~-p~~r--~~~~~~~-~~~~iyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~  203 (301)
T 2vpj_A          141 SMLGDM-QTAR--EGAGLVV-ASGVIYCLGGYDG------------LNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVA  203 (301)
T ss_dssp             EEEEEC-SSCC--BSCEEEE-ETTEEEEECCBCS------------SCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEE
T ss_pred             EECCCC-CCCc--ccceEEE-ECCEEEEECCCCC------------CcccceEEEEeCCCCcEEeCCC-CCcccccceEE
Confidence            555332 2111  1122222 3788998754210            0123569999999888877642 2222   1222


Q ss_pred             EecCCCEEEEEeCC-----CCeEEEEEecCC
Q 022967          225 LSKDEDYLVVCETF-----KFRCLKYWLKGE  250 (289)
Q Consensus       225 ~~~d~~~l~v~~~~-----~~~i~~~~~~~~  250 (289)
                      ..  ++.+|+....     .+.+++||+...
T Consensus       204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            22  3458876432     357899997654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=83.21  E-value=19  Score=30.07  Aligned_cols=156  Identities=13%  Similarity=0.044  Sum_probs=77.8

Q ss_pred             CCCEEEEe--cCCeEEEEecC---CceEEeeeec--CcCccCeEEcCCCcEEEEeCC-----------CceEEEe-CCC-
Q 022967           87 NGVLYTAT--RDGWIKRLHKN---GTWENWKLIG--GDTLLGITTTQENEILVCDAD-----------KGLLKVT-EEG-  146 (289)
Q Consensus        87 ~g~l~v~~--~~g~i~~~~~~---g~~~~~~~~~--~~p~~gl~~d~~g~l~v~~~~-----------~~i~~~~-~~g-  146 (289)
                      ++.||+.-  ....+++++.+   .++.......  .+...+++. -++.|||....           +.++++| .+. 
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            67898532  34579999953   5666554322  121113333 35789986321           2478888 455 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCcccccc----------------------ccceecCCCEEEEEe
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL----------------------DLLEAKPHGKLLKYD  204 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~----------------------~~~~~~~~g~i~~~~  204 (289)
                      .+.+....+  ..+.-..+++ -++.||+.-+...........                      ..........+++||
T Consensus        98 W~~~~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           98 WVKLMSHAP--MGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEECSCCCS--SCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             EEECCCCCC--cccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            554432110  1112223333 678999876531000000000                      000001235799999


Q ss_pred             CCCCeEEEeeCCC--CCc-ceEEEecCCCEEEEEeC------CCCeEEEEEec
Q 022967          205 PSLNETSILLDSL--FFA-NGVALSKDEDYLVVCET------FKFRCLKYWLK  248 (289)
Q Consensus       205 ~~~~~~~~~~~~~--~~p-~gl~~~~d~~~l~v~~~------~~~~i~~~~~~  248 (289)
                      +.+.+.+.+..-.  ... .+++..  ++.||+.--      ....+++|+++
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d  225 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFT  225 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEec
Confidence            9988887764321  111 233332  445887632      13567888763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=82.03  E-value=19  Score=29.27  Aligned_cols=148  Identities=14%  Similarity=0.097  Sum_probs=76.6

Q ss_pred             CCCEEE-Eec----CCeEEEEe-cCCceEEeeeecC-c-CccCeEEcCCCcEEEEeCC-------CceEEEe-CCC-eEE
Q 022967           87 NGVLYT-ATR----DGWIKRLH-KNGTWENWKLIGG-D-TLLGITTTQENEILVCDAD-------KGLLKVT-EEG-VTV  149 (289)
Q Consensus        87 ~g~l~v-~~~----~g~i~~~~-~~g~~~~~~~~~~-~-p~~gl~~d~~g~l~v~~~~-------~~i~~~~-~~g-~~~  149 (289)
                      ++.||+ +-.    ...+++++ .++++........ + -+ +++. -++.||+....       ..++++| ... .+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            678884 322    35688888 4556665543221 1 12 3333 36789886321       3488888 555 555


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEEEec
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSK  227 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~~~~  227 (289)
                      +.. .+...  .-..+ +.-++.||+.-+.....        ........+++||+++++.+.+..-.  +.-..++.. 
T Consensus       133 ~~~-~p~~r--~~~~~-~~~~~~iyv~GG~~~~~--------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  199 (306)
T 3ii7_A          133 KPS-MLTQR--CSHGM-VEANGLIYVCGGSLGNN--------VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-  199 (306)
T ss_dssp             ECC-CSSCC--BSCEE-EEETTEEEEECCEESCT--------TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CCC-CcCCc--ceeEE-EEECCEEEEECCCCCCC--------CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence            432 12111  11122 23477899875421000        00001356999999988887774311  111223332 


Q ss_pred             CCCEEEEEeCC-----CCeEEEEEecCC
Q 022967          228 DEDYLVVCETF-----KFRCLKYWLKGE  250 (289)
Q Consensus       228 d~~~l~v~~~~-----~~~i~~~~~~~~  250 (289)
                      + +.||+.-..     .+.+++||+...
T Consensus       200 ~-~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          200 K-DKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             T-TEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             C-CEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            3 448877321     256889987654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=81.96  E-value=19  Score=29.25  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=76.5

Q ss_pred             CCCEEE-Eec------CCeEEEEe-cCCceEEeeeec-CcCccCeEEcCCCcEEEEeC----------CCceEEEe-CCC
Q 022967           87 NGVLYT-ATR------DGWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDA----------DKGLLKVT-EEG  146 (289)
Q Consensus        87 ~g~l~v-~~~------~g~i~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~----------~~~i~~~~-~~g  146 (289)
                      ++.||+ +-.      ...+++++ .+.+++...... .+....++. -++.||+...          .+.++++| .+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            678884 322      14588888 345565543221 111103333 3678998742          23478888 555


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGV  223 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl  223 (289)
                       .+.+.. .+..  ..-..+++ -+++||+.-+...            ......+++||+++++.+.+..-.  +....+
T Consensus       180 ~W~~~~~-~p~~--r~~~~~~~-~~~~i~v~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          180 TWTELCP-MIEA--RKNHGLVF-VKDKIFAVGGQNG------------LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC  243 (306)
T ss_dssp             EEEEECC-CSSC--CBSCEEEE-ETTEEEEECCEET------------TEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred             eEEECCC-ccch--hhcceEEE-ECCEEEEEeCCCC------------CCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence             555532 1111  11223333 3778998743210            011246899999988887764211  111223


Q ss_pred             EEecCCCEEEEEeC-----CCCeEEEEEecCCC
Q 022967          224 ALSKDEDYLVVCET-----FKFRCLKYWLKGES  251 (289)
Q Consensus       224 ~~~~d~~~l~v~~~-----~~~~i~~~~~~~~~  251 (289)
                      +.. + +.+|+...     ..+.+++||+...+
T Consensus       244 ~~~-~-~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          244 AAV-G-SIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEE-T-TEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             EEE-C-CEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            332 3 44777643     23678999987653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.97  E-value=22  Score=29.16  Aligned_cols=145  Identities=10%  Similarity=-0.027  Sum_probs=73.5

Q ss_pred             CCCEEEEec---------CCeEEEEec-CCceEEeeeec-CcCccCeEEcCCCcEEEEeCC-------CceEEEe-CCC-
Q 022967           87 NGVLYTATR---------DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD-------KGLLKVT-EEG-  146 (289)
Q Consensus        87 ~g~l~v~~~---------~g~i~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~-~~g-  146 (289)
                      ++.||+-..         ...+++++. +++++...... .+....++. -+++||+....       +.++++| .+. 
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            678884321         145888883 45555543211 111103333 46789987421       3488888 555 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC--CCcceEE
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVA  224 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~p~gl~  224 (289)
                      .+.+.. .+..  +.-..++ .-+++||+.-+...            ......+++||+++++.+.+....  +.-.+++
T Consensus       177 W~~~~~-~p~~--r~~~~~~-~~~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          177 WKELAP-MQTA--RSLFGAT-VHDGRIIVAAGVTD------------TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             EEECCC-CSSC--CBSCEEE-EETTEEEEEEEECS------------SSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EEECCC-CCCc--hhceEEE-EECCEEEEEeccCC------------CCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence            554432 1111  1111222 23778998754210            001246899999988888774311  1112233


Q ss_pred             EecCCCEEEEEeCC--------------CCeEEEEEecCC
Q 022967          225 LSKDEDYLVVCETF--------------KFRCLKYWLKGE  250 (289)
Q Consensus       225 ~~~d~~~l~v~~~~--------------~~~i~~~~~~~~  250 (289)
                      .. ++ .||+.--.              .+.+++||++..
T Consensus       241 ~~-~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          241 SL-VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EE-TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EE-CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            22 34 47775321              134778887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	2e-28
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-07
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	1e-04

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  109 bits (273), Expect = 2e-28
 Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 35/243 (14%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGW----------------IKRLHKNGTWENWKL 113
            L +GI NG ED+ +  NG+ + ++   +                +    K       ++
Sbjct: 28  NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI 87

Query: 114 IGGDTL------LGITTTQENE----ILVCDADKG------LLKVTEEGVTVLASHVNGS 157
           IG           GI+T  +++    +LV +               EE   +    +   
Sbjct: 88  IGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK 147

Query: 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
            +   +D++A      Y +        +    ++        +  Y P  N+  ++ +  
Sbjct: 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF 205

Query: 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277
            FANG+ +S D  Y+ + E    +   Y         T + V +     DNI + P    
Sbjct: 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVLSFDTLVDNISVDPVTGD 264

Query: 278 WIA 280
              
Sbjct: 265 LWV 267

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 12/232 (5%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 4   LPPIYADKPIELAP-AKIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ 60

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAA 168
           +    + G  + G+  T   +++    +   +        V     +G+   L     A 
Sbjct: 61  QIHATVEG-KVSGLAFTSNGDLVATGWNADSIP------VVSLVKSDGTVETLLTLPDAI 113

Query: 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228
               I     +      ++   +                   +       F     L + 
Sbjct: 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173

Query: 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
            ++L V  T K   L       + +  E  +       D+     +G+ + A
Sbjct: 174 GNFLYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 224

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 25/241 (10%)

Query: 52  PASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-E 109
           P  S S + T +    +    +G+    E +  DR G L+     +G I +++      +
Sbjct: 17  PIISESELQTITAEPWLEISKKGLQ--LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 74

Query: 110 NWKLIGGDTLLGITTTQENEILVCD-----ADKGLLKVTEEGVTVLASHVNGSRINLADD 164
              +        I   ++  + VC      +  G+   TE G  +     + S     DD
Sbjct: 75  RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 134

Query: 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224
           ++  + G  YF+           G+               P     + ++ ++  ANG+A
Sbjct: 135 MVFDSKGGFYFTDFRGYSTNPLGGVY-----------YVSPDFRTVTPIIQNISVANGIA 183

Query: 225 LSKDEDYLVVCETFKFRCLKYWLKGESKE-----QTEIFVENLPGGPDNIKLAPDGSFWI 279
           LS DE  L V ET   R  +  L+ +         T  +      GPD+  +  D + ++
Sbjct: 184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 243

Query: 280 A 280
           A
Sbjct: 244 A 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.93
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.75
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.45
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.39
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.03
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.99
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.98
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.66
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.54
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.53
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.48
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.41
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.37
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.35
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.26
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.26
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.24
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.12
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.11
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.11
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.02
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.01
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.01
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.77
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.61
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.41
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.36
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.3
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.23
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.18
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.07
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.82
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.4
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.32
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.93
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.46
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.29
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.25
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.21
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.88
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	93.32
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.78
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.45
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.26
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	90.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	89.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	89.29
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.16
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	80.22

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.95  E-value=3.1e-26  Score=196.04  Aligned_cols=214  Identities=21%  Similarity=0.344  Sum_probs=159.4

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEec--------CCeEEEEecC-CceEEeee-----ecCcCccCeEEcCCCc-EE
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR--------DGWIKRLHKN-GTWENWKL-----IGGDTLLGITTTQENE-IL  131 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~--------~g~i~~~~~~-g~~~~~~~-----~~~~p~~gl~~d~~g~-l~  131 (289)
                      ..+++.++ +.+||++++|++|+||+.+.        +|+|++++.+ +....+..     ..+.|. ||+++++|+ ||
T Consensus         9 ~~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~   86 (314)
T d1pjxa_           9 LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLF   86 (314)
T ss_dssp             CCEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEE
T ss_pred             ceEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEE
Confidence            34567777 79999999999999997642        4789999954 45444432     235688 999999985 88


Q ss_pred             EEeCCCceEEEeCCC-eEE-EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe
Q 022967          132 VCDADKGLLKVTEEG-VTV-LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (289)
Q Consensus       132 v~~~~~~i~~~~~~g-~~~-~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  209 (289)
                      +++..+++++++.+| ... +.....+.+++.|++++++++|+|||++..........  ........|+||+++++ ++
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~--~~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SC
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccc--cceeccCCceEEEEeec-Cc
Confidence            898778899999666 443 33345566778899999999999999997633222221  11223456899999998 56


Q ss_pred             EEEeeCCCCCcceEEEecCCC----EEEEEeCCCCeEEEEEecCC-CCcceeeeec---cCCCCCCceeeCCCCCEEEEE
Q 022967          210 TSILLDSLFFANGVALSKDED----YLVVCETFKFRCLKYWLKGE-SKEQTEIFVE---NLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       210 ~~~~~~~~~~p~gl~~~~d~~----~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ...+..++..|||++++++++    .||++++.+++|++|++++. .+...+.+..   ...+.|+||++|.+|+|||+.
T Consensus       164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            667777888999999999875    79999999999999998744 3444444432   122469999999999999999


Q ss_pred             eCcc
Q 022967          282 LQVF  285 (289)
Q Consensus       282 ~~g~  285 (289)
                      +.++
T Consensus       244 ~~~g  247 (314)
T d1pjxa_         244 WGSS  247 (314)
T ss_dssp             ETTT
T ss_pred             cCCC
Confidence            7654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=7.9e-25  Score=187.65  Aligned_cols=195  Identities=22%  Similarity=0.330  Sum_probs=146.9

Q ss_pred             CCcceEEEccCCCEEEEe-cCCeEEEEecCCc-e-EEeeeecCcCccCeEEcCCCcEEEEeCC-----CceEEEeCC-C-
Q 022967           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT-W-ENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTEE-G-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~-~-~~~~~~~~~p~~gl~~d~~g~l~v~~~~-----~~i~~~~~~-g-  146 (289)
                      ...|++++|++|+||+.+ .+++|++++++++ . ..+......|. ||+++++|+|||++..     .+++.++.+ + 
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            345899999999999665 7899999997764 2 33344566799 9999999999999743     347788744 4 


Q ss_pred             eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEe
Q 022967          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (289)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~  226 (289)
                      +..+....  .....+++++++++|++||++....           .....+.+++++++++..+.+..++..|||++|+
T Consensus       119 ~~~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         119 LQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  185 (319)
T ss_dssp             CEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             eeeeccCC--CcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeec
Confidence            55544322  2345789999999999999986421           1124578999999987788888888999999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCc-c-e--e-eeeccCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          227 KDEDYLVVCETFKFRCLKYWLKGESKE-Q-T--E-IFVENLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       227 ~d~~~l~v~~~~~~~i~~~~~~~~~~~-~-~--~-~~~~~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      +|++.||++++..++|++|+++.+... . .  . .........|+||++|.+|+|||+.+.++
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence            999999999999999999998754221 1 1  1 11112224699999999999999998644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.89  E-value=6.4e-22  Score=167.48  Aligned_cols=190  Identities=17%  Similarity=0.231  Sum_probs=145.3

Q ss_pred             ceEEEcc-CCCEE-EEecCCeEEEEecC-CceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEecc
Q 022967           80 EDVCVDR-NGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV  154 (289)
Q Consensus        80 ~~l~~d~-~g~l~-v~~~~g~i~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~  154 (289)
                      |+...|+ +|+|| ++..+++|++++.+ |+.+.+ .....+. +++++++|+||++.. ++++++| ++| ++.+....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeeee
Confidence            4557775 78888 55588999999954 455443 3445666 899999999999975 7899999 667 77777655


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV  234 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v  234 (289)
                      .+.+.+.++++.+|++|++|++++...           +....+.+++++.  ++.+.+..++..|||++++++++.+|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEE
Confidence            555667899999999999999986411           1123467888763  677777788889999999999999999


Q ss_pred             EeCCCCeEEEEEecCCC---Ccceeeeec--cCCCCCCceeeCCCCCEEEEEeCcc
Q 022967          235 CETFKFRCLKYWLKGES---KEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       235 ~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      +++..++|++|+++...   ......+..  ...+.|+++++|++|+|||+++.++
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g  220 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  220 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence            99999999999987532   222334432  3446899999999999999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.86  E-value=8.9e-20  Score=154.54  Aligned_cols=189  Identities=18%  Similarity=0.246  Sum_probs=143.0

Q ss_pred             eEeccCCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe---
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT---  143 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~---  143 (289)
                      ..++.+  ..||++++++||+||+++ .+++|++++++|+...+....+.|. +++++++|++|+++.. +.+.+++   
T Consensus        22 ~~~p~~--~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          22 TSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             EEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EECCCC--CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEecc
Confidence            344444  348999999999999777 6899999999999888888788899 9999999999999754 4465555   


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--------
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--------  214 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--------  214 (289)
                      .++ .+.+.....   ...+++++++++|++|+++..                 .+.+++++++++....+.        
T Consensus        99 ~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          99 SDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             TTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             cccceeeccccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCcccee
Confidence            344 555544322   346889999999999999864                 478999998877665442        


Q ss_pred             ---CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          215 ---DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       215 ---~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                         .....++|+.++  ++.+|++++..++|++++.++.. ......+. . ...|+++++|.+|+||++...+
T Consensus       159 ~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~pdgia~d~dG~l~va~~~~  228 (302)
T d2p4oa1         159 NSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-E-QTNIDDFAFDVEGNLYGATHIY  228 (302)
T ss_dssp             STTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-E-SCCCSSEEEBTTCCEEEECBTT
T ss_pred             eccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc-C-CCCCcceEECCCCCEEEEEcCC
Confidence               224566787664  66799999999999999987643 22233332 2 2579999999999999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=2.1e-19  Score=148.97  Aligned_cols=186  Identities=14%  Similarity=0.200  Sum_probs=137.7

Q ss_pred             CCcCCcceEEEccCCCEEEEecCCeEEEEecCCceEEee--eecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-eEE
Q 022967           74 GILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTV  149 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~~g~~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-~~~  149 (289)
                      +.+..|++++++++|+||+++..+.+.++..++......  .....|. +++++++|++|+++.. ..+++++.++ ...
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccceee
Confidence            336789999999999999998777777776444332222  2235688 9999999999999865 4577787555 322


Q ss_pred             EEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecC
Q 022967          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD  228 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d  228 (289)
                      ...   ...+..|.+|+++++|++|+++..                 .++|+++++++.....+. ..+..|.||+++++
T Consensus       133 ~~~---~~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         133 VLP---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             ECC---CCSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eee---ecccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeeee
Confidence            211   123567899999999999999854                 468999999866555543 56788999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       229 ~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      |+ |||++..+++|++|+.++...   ..+.......|.+|++|++|+|||+....
T Consensus       193 g~-l~vsd~~~~~i~~~~~~~~~~---~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         193 GT-VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             CC-EEEEETTTTEEEEECTTCSCC---EECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ee-eeeeecCCCEEEEEeCCCCeE---EEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            87 999999999999998665321   11211222579999999999999998653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.84  E-value=1.6e-19  Score=155.19  Aligned_cols=209  Identities=20%  Similarity=0.300  Sum_probs=146.9

Q ss_pred             cCCcCCcceEEEccCCCEEEEec-------------CCeEEEEec---CCceEEeeeec-------CcCccCeEE--cCC
Q 022967           73 EGILNGPEDVCVDRNGVLYTATR-------------DGWIKRLHK---NGTWENWKLIG-------GDTLLGITT--TQE  127 (289)
Q Consensus        73 ~~~~~~p~~l~~d~~g~l~v~~~-------------~g~i~~~~~---~g~~~~~~~~~-------~~p~~gl~~--d~~  127 (289)
                      ++...+||+|+++++|.+|+++.             .|.|+.++.   +.+...+....       -.|+ ||.+  +.+
T Consensus        31 ~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~~~d  109 (340)
T d1v04a_          31 KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDD  109 (340)
T ss_dssp             TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEECTT
T ss_pred             CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEEcCC
Confidence            35467999999999999886652             378888882   22333332221       3578 8876  456


Q ss_pred             C--cEEEEeCC---C--ceEEEeCCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCE
Q 022967          128 N--EILVCDAD---K--GLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (289)
Q Consensus       128 g--~l~v~~~~---~--~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~  199 (289)
                      |  .|||.++.   .  .++.++.++ ............+..++++++..+|.+|+++............+.+...+.+.
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~  189 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  189 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCcee
Confidence            6  47777752   1  256666444 33334445556678899999999999999976421111111123334456778


Q ss_pred             EEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC-CCCEE
Q 022967          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFW  278 (289)
Q Consensus       200 i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~lw  278 (289)
                      ++++++  ++.+++.+++.+||||++++|+++|||+++..++|++|+++++.......+. .+++.||||.+|. +|.+|
T Consensus       190 v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         190 VTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             EEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEE
Confidence            999986  4567778889999999999999999999999999999999876443333344 5788999999995 78999


Q ss_pred             EEEeCcc
Q 022967          279 IAILQVF  285 (289)
Q Consensus       279 v~~~~g~  285 (289)
                      ++.+..+
T Consensus       267 va~~p~~  273 (340)
T d1v04a_         267 VGCHPNG  273 (340)
T ss_dssp             EEEESCH
T ss_pred             EEECCcc
Confidence            9987543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=2.5e-19  Score=148.55  Aligned_cols=183  Identities=16%  Similarity=0.234  Sum_probs=134.3

Q ss_pred             CCcceEEEccCCCEEEEe--cCCeEEEEecCCceEEee--eecCcCccCeEEcCCCcEEEEeCCCceEEEeCCC-eEEEE
Q 022967           77 NGPEDVCVDRNGVLYTAT--RDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLA  151 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~--~~g~i~~~~~~g~~~~~~--~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g-~~~~~  151 (289)
                      -+|++|++|++|++|+.+  .++++.+++.++......  .....|. |++++++|+|||++..++++++..++ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            479999999999999765  457888887555433332  2235788 99999999999999887777777444 32221


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe-eCCCCCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~-~~~~~~p~gl~~~~d~~  230 (289)
                      .   ...+..|.+|+++++|+||+++..                 ..++++++..+...... ..++..|.+++++++++
T Consensus        93 ~---~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          93 P---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             C---CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             e---eeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC
Confidence            1   123467899999999999999853                 35788998876554443 35678999999999988


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                       +|+++....+|.+++.++..   ...+.......|.+|++|.+|+|||+....
T Consensus       153 -~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         153 -VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             -EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             -Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCC
Confidence             99999999999999876532   122221223579999999999999999754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1.1e-17  Score=139.77  Aligned_cols=187  Identities=13%  Similarity=0.238  Sum_probs=133.5

Q ss_pred             CCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEE-eee--------------------------------------
Q 022967           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWEN-WKL--------------------------------------  113 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~-~~~--------------------------------------  113 (289)
                      +.+..|.+|++|++|+|||++ .+++|.+++.+|++.. +..                                      
T Consensus        20 g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          20 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            347889999999999999887 6788999886664221 100                                      


Q ss_pred             ------------ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC--eEEEEeccCCccccCccceEEcCCCcEEEeeC
Q 022967          114 ------------IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (289)
Q Consensus       114 ------------~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~  178 (289)
                                  ....|. +++++++|++|+++.. ..+..++.+|  +..+..   ...+..+.+++++++|++|+++.
T Consensus       100 ~~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC---SKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             TTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC---TTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCCceeecccc---cccccccceeeeccceeEEeeec
Confidence                        002345 7888888889988865 4477777666  333322   22356788999999999999986


Q ss_pred             CCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCCC-CeEEEEEecCCCCcce
Q 022967          179 STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETFK-FRCLKYWLKGESKEQT  255 (289)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~  255 (289)
                      .                 .+.|++|++++.....+.  ..+..|.||+++++|+ +||+|..+ .+|.+|+.+|+-+   
T Consensus       176 ~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~~---  234 (279)
T d1q7fa_         176 R-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLI---  234 (279)
T ss_dssp             G-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEE---
T ss_pred             c-----------------ccceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCEE---
Confidence            4                 368999999865555553  2467899999999998 99999754 5799998766422   


Q ss_pred             eeeeccC-CCCCCceeeCCCCCEEEEEeCcc
Q 022967          256 EIFVENL-PGGPDNIKLAPDGSFWIAILQVF  285 (289)
Q Consensus       256 ~~~~~~~-~~~p~~i~~d~~G~lwv~~~~g~  285 (289)
                      ..+.... ...|.+|++|.+|+|||+.....
T Consensus       235 ~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~  265 (279)
T d1q7fa_         235 SALESKVKHAQCFDVALMDDGSVVLASKDYR  265 (279)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEEETTTE
T ss_pred             EEEeCCCCCCCEeEEEEeCCCcEEEEeCCCe
Confidence            1222122 24689999999999999886544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.75  E-value=3e-17  Score=139.58  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             cCCcceEEEccCCCEEEEec----------------CCeEEEEecCCceEEeeeecCcCccCeEEcCCC-----cEEEEe
Q 022967           76 LNGPEDVCVDRNGVLYTATR----------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-----EILVCD  134 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~----------------~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-----~l~v~~  134 (289)
                      +..|.++++|++|+||+++.                .|+|++++++|+...+......|+ ||++++++     .||+++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            55799999999999998752                357999999998887777778899 99997765     399998


Q ss_pred             CC-CceEEEe--CCC-eE--EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          135 AD-KGLLKVT--EEG-VT--VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       135 ~~-~~i~~~~--~~g-~~--~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                      .. +.|++++  .+| +.  .+.....+.....|.+|++|++|+||+++..                 .++|++|||+++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCC
Confidence            76 5688887  456 32  2222233333446889999999999999743                 478999999977


Q ss_pred             eEE-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          209 ETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       209 ~~~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      +.. .+......|.+++|.+|++.|||++..+++|++++..
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            643 3444567889999999999999999999999999975

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.3e-14  Score=117.61  Aligned_cols=183  Identities=11%  Similarity=0.102  Sum_probs=132.2

Q ss_pred             cCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-----eEE-eeeecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCC
Q 022967           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WEN-WKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (289)
Q Consensus        76 ~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-----~~~-~~~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~  145 (289)
                      +..|.+|.+|. ++.||.++ ..+.|.+.+.+|.     .+. .......|. |||+|. .++||+++.. +.|.+.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            57788899997 67788665 6788988875441     222 223345688 999995 5689999976 457777766


Q ss_pred             C--eEEEEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcc
Q 022967          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~  221 (289)
                      |  ...+...    ....|.+|+++| +|.||+++..                ..++|++.+.++...+.+. .++..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceee
Confidence            6  3333321    234689999998 6899999754                2368999999976665554 6788999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--CCCCCceeeCCCCCEEEEEeC
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL--PGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      |+++++.++.|||+|...++|.+++++|...   .......  ...|.+|+++. ++||++...
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~~-~~ly~td~~  227 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDII  227 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCE---EEEEeCCCcccccEEEEEEC-CEEEEEECC
Confidence            9999999999999999999999999987532   2222121  24688999994 789888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.7e-14  Score=119.24  Aligned_cols=181  Identities=15%  Similarity=0.118  Sum_probs=133.3

Q ss_pred             CcceEEEcc-CCCEEEEe-cCCeEEEEecCCc-eEEee-eecCcCccCeEEcC-CCcEEEEeCC-CceEEEeCCC--eEE
Q 022967           78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG--VTV  149 (289)
Q Consensus        78 ~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~l~v~~~~-~~i~~~~~~g--~~~  149 (289)
                      .+.+|++|. ++.||.++ ..+.|++.+.+|. .+.+. .....|. +|++|. .++||+++.. +.|.+.+.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            356788887 67788665 6788999986664 33333 2345788 999995 6689999876 4688888666  444


Q ss_pred             EEeccCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEec
Q 022967          150 LASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSK  227 (289)
Q Consensus       150 ~~~~~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~  227 (289)
                      +...    .+..|.+|++|| .|.+|+++...               ...+|++.+.++...+. +..++..|+||++++
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            4332    245789999998 67899997541               23579999998665444 446788999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                      .++.|||+|.+.+.|.+++.+|..   .+.....+ ..|.+|+++ ++.||++++.
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~-~~P~~lav~-~~~lYwtd~~  227 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGL-QYPFAVTSY-GKNLYYTDWK  227 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEE---EEEEEECC-CSEEEEEEE-TTEEEEEETT
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCC---eEEEECCC-CCcEEEEEE-CCEEEEEECC
Confidence            999999999999999999988642   23333344 468999998 4789999865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=1.8e-13  Score=113.85  Aligned_cols=154  Identities=18%  Similarity=0.175  Sum_probs=114.3

Q ss_pred             cCCcCCcceEEEccCCCEEEEe-cCCeEEEEecCCceEEee-e--ecCcCccCeEEcCCCcEEEEeCC-CceEEEeCCC-
Q 022967           73 EGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWK-L--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-  146 (289)
Q Consensus        73 ~~~~~~p~~l~~d~~g~l~v~~-~~g~i~~~~~~g~~~~~~-~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~~~g-  146 (289)
                      ...+..|.++++|++|++|+.+ ..+++.+++.+|+..... .  ....+. +++++++|++|+++.. +.|++++.+| 
T Consensus       110 ~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~i~~d~~g~i~v~d~~~~~V~~~d~~G~  188 (279)
T d1q7fa_         110 ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEIFISDNRAHCVKVFNYEGQ  188 (279)
T ss_dssp             TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEEEEEEGGGTEEEEEETTCC
T ss_pred             CCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccc-eeeeccceeEEeeeccccceeeeecCCc
Confidence            3446789999999999999766 568899999888754322 1  234567 9999999999999876 5688888777 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--CCCCcceE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGV  223 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~~~p~gl  223 (289)
                       +..+.   ....+..|.+|++|++|+|||++..                .+.+|.++++++.-...+..  ....|.+|
T Consensus       189 ~~~~~g---~~g~~~~P~giavD~~G~i~Vad~~----------------~~~~v~~f~~~G~~~~~~~~~~~~~~p~~v  249 (279)
T d1q7fa_         189 YLRQIG---GEGITNYPIGVGINSNGEILIADNH----------------NNFNLTIFTQDGQLISALESKVKHAQCFDV  249 (279)
T ss_dssp             EEEEES---CTTTSCSEEEEEECTTCCEEEEECS----------------SSCEEEEECTTSCEEEEEEESSCCSCEEEE
T ss_pred             eeeeec---ccccccCCcccccccCCeEEEEECC----------------CCcEEEEECCCCCEEEEEeCCCCCCCEeEE
Confidence             44332   1234568999999999999999854                23578889987433334432  34579999


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEec
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      ++++||. |||++. +++|.+|...
T Consensus       250 av~~dG~-l~V~~~-n~~v~~fr~~  272 (279)
T d1q7fa_         250 ALMDDGS-VVLASK-DYRLYIYRYV  272 (279)
T ss_dssp             EEETTTE-EEEEET-TTEEEEEECS
T ss_pred             EEeCCCc-EEEEeC-CCeEEEEEee
Confidence            9999986 999985 6899888643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.57  E-value=2.6e-13  Score=115.12  Aligned_cols=182  Identities=15%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             cCCcceEEEccCCCEEEEec-----CCeEEEEecCC-ceEEeeee---cCcCccCeEEcCCCcEEEEeCCC-------ce
Q 022967           76 LNGPEDVCVDRNGVLYTATR-----DGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADK-------GL  139 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~~-----~g~i~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~l~v~~~~~-------~i  139 (289)
                      ...|.+|+++++|+||++..     .+.+..++.++ ........   ...++ +++++++|++|+++...       .+
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~n-d~~~d~~G~l~vtd~~~~~~~~~g~v  159 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGV  159 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCc-ceeEEeccceeecccccccccCccee
Confidence            35799999999999997652     35688887544 33333322   23577 89999999999997532       38


Q ss_pred             EEEeCCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--CeEE---
Q 022967          140 LKVTEEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETS---  211 (289)
Q Consensus       140 ~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~~~---  211 (289)
                      ++++.++  ++.+..     .+..|++|++++||+ ||+++..                 .++|++|+.+.  ....   
T Consensus       160 ~~~~~dg~~~~~~~~-----~~~~pnGia~s~dg~~lyvad~~-----------------~~~I~~~d~~~~g~~~~~~~  217 (319)
T d2dg1a1         160 YYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFG  217 (319)
T ss_dssp             EEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEE
T ss_pred             EEEecccceeEEEee-----ccceeeeeeeccccceEEEeccc-----------------CCceEEEEEcCCCceecccc
Confidence            8888655  555543     245789999999985 9999864                 46888887432  2111   


Q ss_pred             ----EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCCCCC-EEEEE
Q 022967          212 ----ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGS-FWIAI  281 (289)
Q Consensus       212 ----~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~-lwv~~  281 (289)
                          ....+...|.||+++.+|+ |||++.+.++|.+|+.+|+.+.....-..  .....+.+++...+++ +|+.+
T Consensus       218 ~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         218 ATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                1123455699999999998 99999999999999987753322211000  0012355677765553 45544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5.5e-13  Score=109.92  Aligned_cols=174  Identities=15%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             CCcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceE-Eee-eecCcCccCeEEcC-CCcEEEEeCCC---ceEEEeCC
Q 022967           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE-NWK-LIGGDTLLGITTTQ-ENEILVCDADK---GLLKVTEE  145 (289)
Q Consensus        74 ~~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~-~~~-~~~~~p~~gl~~d~-~g~l~v~~~~~---~i~~~~~~  145 (289)
                      ..+..|++|++|. .++||+.+ ..++|.+.+.+|+.. .+. .....|. +|++|+ .|.+|+++.+.   .|++.+.+
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~-~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc-EEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            3367899999997 78899766 567999999777543 222 3346788 999996 56799998653   38888866


Q ss_pred             C--eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcce
Q 022967          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (289)
Q Consensus       146 g--~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~g  222 (289)
                      |  .+.+..    ..+..|.+|++|+. ++||++|..                 .+.|.+++.++...+.+..++..|.+
T Consensus       155 G~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~~g~~~~~v~~~~~~P~~  213 (263)
T d1npea_         155 GTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQYPFA  213 (263)
T ss_dssp             SCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCSEEE
T ss_pred             CCCceeeee----ecccccceEEEeecCcEEEEEeCC-----------------CCEEEEEECCCCCeEEEECCCCCcEE
Confidence            6  455443    23457899999975 579999864                 46899999987777777788889999


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCC
Q 022967          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (289)
Q Consensus       223 l~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  273 (289)
                      |+++  +++|||+|...++|.+++..+..  ....+.......|.+|++-.
T Consensus       214 lav~--~~~lYwtd~~~~~I~~~~~~~g~--~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         214 VTSY--GKNLYYTDWKTNSVIAMDLAISK--EMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEETTTTE--EEEEECCSSCCCCCCEEEEC
T ss_pred             EEEE--CCEEEEEECCCCEEEEEECCCCc--cceEECCCCCCCcceEEEeC
Confidence            9986  56799999999999999976432  22333323334677887643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6e-12  Score=103.78  Aligned_cols=171  Identities=16%  Similarity=0.180  Sum_probs=122.2

Q ss_pred             CCcCCcceEEEcc-CCCEEEEe-cCCeEEEEecCCceEEe--eeecCcCccCeEEcC-CCcEEEEeCC--CceEEEeCCC
Q 022967           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEEG  146 (289)
Q Consensus        74 ~~~~~p~~l~~d~-~g~l~v~~-~~g~i~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~l~v~~~~--~~i~~~~~~g  146 (289)
                      ..+..|++||+|. .++||+++ ..++|.+.+.+|.....  ......|. +|++|+ .|.||+++.+  .+|++.+.+|
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~-~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-eEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            3368899999997 78899766 56889999988764332  23346788 999996 6789999865  3589998666


Q ss_pred             --eEEEEeccCCccccCccceEEcCC-CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee---CCCCCc
Q 022967          147 --VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DSLFFA  220 (289)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~l~~~~d-G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~p  220 (289)
                        .+.+...    .+..|++|++|+. ++||+++..                 .+.|.+++.++...+.+.   ..+..|
T Consensus       153 s~~~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~~~~~p  211 (266)
T d1ijqa1         153 VDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHP  211 (266)
T ss_dssp             CCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTTSSE
T ss_pred             Cceeccccc----ccceeeEEEeeccccEEEEecCC-----------------cCEEEEEECCCCCEEEEEeCCCccccc
Confidence              5555432    2457899999985 579999864                 468999999876555443   235678


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  271 (289)
                      .+|+++  +++|||+|...++|++++..+..  ..+.....+ ..|.+|.+
T Consensus       212 ~~lav~--~~~ly~td~~~~~I~~~~~~~g~--~~~~~~~~~-~~p~~i~v  257 (266)
T d1ijqa1         212 FSLAVF--EDKVFWTDIINEAIFSANRLTGS--DVNLLAENL-LSPEDMVL  257 (266)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTTCC--CCEEEECSC-SCCCCEEE
T ss_pred             EEEEEE--CCEEEEEECCCCeEEEEECCCCc--ceEEEEcCC-CCceEEEE
Confidence            888887  56799999999999999865432  222333232 34666654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.45  E-value=4.4e-12  Score=106.40  Aligned_cols=185  Identities=14%  Similarity=0.098  Sum_probs=125.3

Q ss_pred             cCCcceEEEccCCCEEEEe-cCCeEEEEe---cCCceEEeee--ecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-
Q 022967           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH---KNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-  146 (289)
Q Consensus        76 ~~~p~~l~~d~~g~l~v~~-~~g~i~~~~---~~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-  146 (289)
                      ...|.+++++++|+||++. .++.+.+++   .++....+..  ....++ +++++++|++|+++.. ..+++++ .++ 
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccc-eeEEccCCCEEeeccccccceeeeccCCc
Confidence            3578999999999999766 566677766   3455554443  234577 9999999999999865 4688998 455 


Q ss_pred             eEEEEecc------CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE---EeeCCC
Q 022967          147 VTVLASHV------NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSL  217 (289)
Q Consensus       147 ~~~~~~~~------~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~  217 (289)
                      ........      .......++++..+. +.+|+++..                 .+.|++++.+.....   ......
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~  207 (302)
T d2p4oa1         146 GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE-----------------KMLLLRIPVDSTDKPGEPEIFVEQ  207 (302)
T ss_dssp             EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT-----------------TTEEEEEEBCTTSCBCCCEEEEES
T ss_pred             ceeEecCCccceeeccCcccccccccccC-CceeeecCC-----------------CCeEEeccccccccccccccccCC
Confidence            44332211      112234567887764 578998764                 478999987643211   122345


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCceeeCC---CC-CEEEEEeCc
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAP---DG-SFWIAILQV  284 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~---~G-~lwv~~~~g  284 (289)
                      ..|.|+++++||+ ||+++...++|.+|+.+++    ...+..  ..-..|.+++++.   |+ .|||++..+
T Consensus       208 ~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~----~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         208 TNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCcceEECCCCC-EEEEEcCCCcEEEECCCCC----EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            6799999999998 9999988899999987764    222221  1113588899953   43 599998654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.44  E-value=2e-11  Score=108.04  Aligned_cols=170  Identities=15%  Similarity=0.184  Sum_probs=110.6

Q ss_pred             ceeEeccCCcCCcceEEEccCCCEEEEec-CCeEEEEe-cCCceEEeeeec---------CcCccCeEEcC----CCcEE
Q 022967           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLH-KNGTWENWKLIG---------GDTLLGITTTQ----ENEIL  131 (289)
Q Consensus        67 ~~~~~~~~~~~~p~~l~~d~~g~l~v~~~-~g~i~~~~-~~g~~~~~~~~~---------~~p~~gl~~d~----~g~l~  131 (289)
                      .++.+.++ +..|++|++.++|+|||+.. .|+|++++ .++..+.+....         +.-+ ||++|+    ++.+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            45677777 89999999999999999995 69999998 456555443221         2235 799986    46788


Q ss_pred             EEeC---------C--C--ceEEEe--CCC--e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccc---
Q 022967          132 VCDA---------D--K--GLLKVT--EEG--V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG---  188 (289)
Q Consensus       132 v~~~---------~--~--~i~~~~--~~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~---  188 (289)
                      ++-.         .  +  .+.++.  .+.  .   +.+.........|....|++++||.|||+.+..........   
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            8631         0  0  133333  222  1   22333334444567779999999999999775211100000   


Q ss_pred             ---------c--c-cceecCCCEEEEEeCCCCe-----------EEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          189 ---------L--D-LLEAKPHGKLLKYDPSLNE-----------TSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       189 ---------~--~-~~~~~~~g~i~~~~~~~~~-----------~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                               .  . .-.....|.|+|+++++..           .++++.++++|.+++|+++++ ||++|.+.
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G~  248 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGP  248 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECS
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeeccccc
Confidence                     0  0 0011235899999987542           256789999999999999777 99998653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=9.3e-12  Score=104.18  Aligned_cols=178  Identities=11%  Similarity=0.110  Sum_probs=123.8

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeec-----CcCccCeEEcCCCcEEEEeCC-------CceEEEe
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG-----GDTLLGITTTQENEILVCDAD-------KGLLKVT  143 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~-----~~p~~gl~~d~~g~l~v~~~~-------~~i~~~~  143 (289)
                      ..|.+++.+++|+||+++.+ +|++++ .+|+.+.+....     ..++ .+.+|++|++|+++..       ..++++.
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccce-eeEECCCCCEEEEeccccccccceeEeeec
Confidence            45778999999999998764 599999 567777665422     2466 8899999999999632       1245554


Q ss_pred             CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC--C----eEEEee-
Q 022967          144 EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--N----ETSILL-  214 (289)
Q Consensus       144 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~--~----~~~~~~-  214 (289)
                       +| ++.+...     +..+++++++++++ +|+++..                 .+.|++++.+.  +    +...+. 
T Consensus       137 -~g~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt~-----------------~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         137 -KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             -TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             -CCcEEEEeec-----cCCcceeeecCCCceEEEeecc-----------------cceeeEeeecccccccccceEEEec
Confidence             45 5544332     45789999999985 9999864                 46788886542  1    122222 


Q ss_pred             --CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCceeeC-CC-CCEEEEEeCcc
Q 022967          215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLA-PD-GSFWIAILQVF  285 (289)
Q Consensus       215 --~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d-~~-G~lwv~~~~g~  285 (289)
                        .....|.|++++.+|+ ||++....++|.+|+.+|+.+..    + .+| ..|.++++. +| ..|||.+...+
T Consensus       194 ~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~~~----i-~lP~~~~T~~~FGG~d~~~LyvTta~~~  263 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIAR----Y-EVPGKQTTCPAFIGPDASRLLVTSAREH  263 (295)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEE----E-ECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             cCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcEeeE----e-cCCCCceEEEEEeCCCCCEEEEEECCcC
Confidence              2345689999999998 99999888999999987753322    1 222 357888885 34 37999876533

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.03  E-value=6.6e-08  Score=78.75  Aligned_cols=186  Identities=12%  Similarity=0.158  Sum_probs=121.4

Q ss_pred             eEeccCCcCCcceEEEccCCC-EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCc-eEEEe
Q 022967           69 TRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-LLKVT  143 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~-i~~~~  143 (289)
                      ..+..+  ..|.+++++++|+ ||++. .+++|..+| .+++..........|. ++++++++. ++++..... +..++
T Consensus        26 ~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
T d1l0qa2          26 ATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVID  102 (301)
T ss_dssp             EEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecc
Confidence            344444  5699999999987 67665 678999999 4565443334455678 999998886 556554443 45555


Q ss_pred             -CCC-eEEEEeccCCccccCccceEEcCCCcEE-EeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc
Q 022967          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIY-FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (289)
Q Consensus       144 -~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~ly-v~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p  220 (289)
                       .++ .......     ...+..+.+.+||..+ ++...                 ...+..++..++...........|
T Consensus       103 ~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  160 (301)
T d1l0qa2         103 TTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSP  160 (301)
T ss_dssp             TTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSE
T ss_pred             cccceeeeeccc-----cccceEEEeecCCCeeeeeecc-----------------ccceeeeeccccceeeecccCCCc
Confidence             445 3222221     1346788999999644 44322                 345777787777666555666778


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      ..++++++++.+|++......+..++.......  ...  .....|.+++++.+|. +|++..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI--DTV--KVEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEE--ECSSEEEEEEECTTSSEEEEEEEC
T ss_pred             eEEEeeccccceeeecccccccccccccceeee--ecc--cccCCcceeecccccccccccccc
Confidence            999999999999999888777777665432211  111  2234577888888885 4565543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.01  E-value=3.4e-08  Score=80.57  Aligned_cols=166  Identities=16%  Similarity=0.228  Sum_probs=114.9

Q ss_pred             EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--eEEEEeccCCccccCc
Q 022967           90 LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINLA  162 (289)
Q Consensus        90 l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~~~  162 (289)
                      +||+. .++.|..+| .+++..........|. ++++++||+ ||++... +.|..+| .++  +..+..      ...+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------~~~~   76 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSSP   76 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSSE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------cccc
Confidence            67665 678899999 6777655555567789 999999996 7788754 5688888 666  333321      1357


Q ss_pred             cceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          163 DDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       163 ~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      .+++++++|. ++++...                 ...+..++..+++..........+..+++++|++.++++......
T Consensus        77 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             EEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cccccccccccccccccc-----------------cceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccc
Confidence            7899999986 5555432                 356778888877766665666778899999999999999888788


Q ss_pred             EEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          242 CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      +..++......  ...+  .....|..++...++. +|++...
T Consensus       140 ~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         140 VSVINTVTKAV--INTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEETTTTEE--EEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             eeeeeccccce--eeec--ccCCCceEEEeeccccceeeeccc
Confidence            88887654321  1111  1224577788887764 5666544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.99  E-value=1.4e-08  Score=86.98  Aligned_cols=189  Identities=13%  Similarity=0.102  Sum_probs=109.4

Q ss_pred             CCcceEEEccCCC-EEEEe---cCCeEEEEe--cCC------------ceEEee-----eecCcCccCeEEcCCCc-EEE
Q 022967           77 NGPEDVCVDRNGV-LYTAT---RDGWIKRLH--KNG------------TWENWK-----LIGGDTLLGITTTQENE-ILV  132 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~---~~g~i~~~~--~~g------------~~~~~~-----~~~~~p~~gl~~d~~g~-l~v  132 (289)
                      ..|..++++++|+ +|+..   ..+.|..+.  .++            ......     .....++ +++++++|+ +|+
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEE
Confidence            4688999998775 46543   235555443  222            211111     1123567 999999996 888


Q ss_pred             EeCC-CceEEEe--CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          133 CDAD-KGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       133 ~~~~-~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                      ++.+ ..|+.++  .+| ...............|+.++++|||+ +|++...                 .+.|..|+.++
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------------~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------------GNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------------CCEEEEEEecC
Confidence            8866 4566665  455 44332222222235789999999996 7777643                 34555554433


Q ss_pred             Ce--EE-Ee-----e------------CCCCCcceEEEecCCCEEEEEeCCCCe-----EEEEEecCCC-Ccceeeee--
Q 022967          208 NE--TS-IL-----L------------DSLFFANGVALSKDEDYLVVCETFKFR-----CLKYWLKGES-KEQTEIFV--  259 (289)
Q Consensus       208 ~~--~~-~~-----~------------~~~~~p~gl~~~~d~~~l~v~~~~~~~-----i~~~~~~~~~-~~~~~~~~--  259 (289)
                      +.  .. ..     .            .....+..++++|||++||+++++.+.     |..|+++... +.....+.  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            22  11 10     0            011235678999999999999765433     7777765432 22111111  


Q ss_pred             ccCCCCCCceeeCC-CCC-EEEEEeC
Q 022967          260 ENLPGGPDNIKLAP-DGS-FWIAILQ  283 (289)
Q Consensus       260 ~~~~~~p~~i~~d~-~G~-lwv~~~~  283 (289)
                      ......|.+++++. +|. |||+...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCC
Confidence            12235799999985 786 6777543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=3e-07  Score=75.91  Aligned_cols=202  Identities=10%  Similarity=0.110  Sum_probs=109.6

Q ss_pred             CCcceEEEccCCC-EEEEe-cCCeEEEEe--cCC-ceEEee--eecCcCccCeEEcCCCc-EEEEeCCCc-eEEEe-CCC
Q 022967           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNG-TWENWK--LIGGDTLLGITTTQENE-ILVCDADKG-LLKVT-EEG  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~-~~g~i~~~~--~~g-~~~~~~--~~~~~p~~gl~~d~~g~-l~v~~~~~~-i~~~~-~~g  146 (289)
                      ..|.+|++.|||+ ||++. .++.|..++  .++ ..+...  .....|. ++++++||+ ||+++...+ +..++ .+.
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccc
Confidence            5689999999987 67776 478888776  232 322222  2345688 999999996 777775443 44444 333


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCc-c---Ccccc---c---------------cccceecCCCEEEE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTK-F---GLHNW---G---------------LDLLEAKPHGKLLK  202 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~-~---~~~~~---~---------------~~~~~~~~~g~i~~  202 (289)
                       .........  ....+.++.+++||+ +++++.... .   .....   .               +.+........++.
T Consensus       116 ~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         116 LPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             EEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cceecccccC--CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence             222221111  123466788888885 444432210 0   00000   0               00000000011111


Q ss_pred             EeCCCCeEEEe---------------e------CCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCC-cceeeeec
Q 022967          203 YDPSLNETSIL---------------L------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVE  260 (289)
Q Consensus       203 ~~~~~~~~~~~---------------~------~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~  260 (289)
                      .....+...+.               .      .....+.++++++|++++|++....+.+..|+++.... ....... 
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-  272 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-
Confidence            11111111110               0      11234567889999999999999888998888865422 2222222 


Q ss_pred             cCCCCCCceeeCCCCC-EEEEEe
Q 022967          261 NLPGGPDNIKLAPDGS-FWIAIL  282 (289)
Q Consensus       261 ~~~~~p~~i~~d~~G~-lwv~~~  282 (289)
                      .....|.++++++||+ +|++..
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECT
T ss_pred             CCCCCeeEEEEeCCCCEEEEEEC
Confidence            2335799999999997 577654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=2.1e-07  Score=76.94  Aligned_cols=171  Identities=12%  Similarity=0.106  Sum_probs=107.5

Q ss_pred             CEEEEe-cCCeEEEEe--cCCceEEe--eeecCcCccCeEEcCCCc-EEEEeCC-CceEEEe--CCC--eEEEEeccCCc
Q 022967           89 VLYTAT-RDGWIKRLH--KNGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--EEG--VTVLASHVNGS  157 (289)
Q Consensus        89 ~l~v~~-~~g~i~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~--~~g--~~~~~~~~~~~  157 (289)
                      .+||+. .++.|+.|+  .+|..+.+  ....+.+. +|++++||+ ||++... +.|..++  .++  .+.......  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~--   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc--
Confidence            578776 678888887  45544433  34557788 999999996 7788754 4455444  333  333322211  


Q ss_pred             cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE---EeeCCCCCcceEEEecCCCEEE
Q 022967          158 RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       158 ~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                       ...|.+++++|||+ ||++...                 .+.+..++.+.....   ........+.++.+++|++.++
T Consensus        82 -~~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~  143 (333)
T d1ri6a_          82 -PGSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  143 (333)
T ss_dssp             -SSCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             -CCCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence             13577899999996 7776532                 234444443333322   2234556788999999999999


Q ss_pred             EEeCCCCeEEEEEecCCCCcce--e-eeeccCCCCCCceeeCCCCCEEEE
Q 022967          234 VCETFKFRCLKYWLKGESKEQT--E-IFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                      +++.....|..|+.........  . .........|..++++.++.....
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            9999889999998764322111  1 111122356788999888865443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.92  E-value=4.9e-08  Score=85.36  Aligned_cols=174  Identities=10%  Similarity=-0.068  Sum_probs=109.1

Q ss_pred             EEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEEEeccCC-ccccCcc
Q 022967           90 LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNG-SRINLAD  163 (289)
Q Consensus        90 l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~~~~~~~-~~~~~~~  163 (289)
                      +++.. .+|.|..+| ..++.......+..|+ +++|.+||+ +|++...+.+..+| ..+ .........+ .......
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            34544 678999999 5566555444455688 999999996 77777656678888 444 2222111111 1111223


Q ss_pred             ceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------------CCCcceEEEecCCC
Q 022967          164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFANGVALSKDED  230 (289)
Q Consensus       164 ~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------------~~~p~gl~~~~d~~  230 (289)
                      ..+++|||+ ||++...                 .+.+..+|.++++.......            .....++++++|++
T Consensus       113 s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             CCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence            334567996 6776532                 35788888887765433211            12335678899999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCC-EEEEEeC
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      .++++....+.|..++....+.......  .....|.+++++++|+ ++++...
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccc
Confidence            9999988889999998764322222111  2235688999999997 4555543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.91  E-value=2.7e-07  Score=78.66  Aligned_cols=187  Identities=13%  Similarity=0.087  Sum_probs=110.5

Q ss_pred             CCcceEEEccCCC-EEEEecCCeEEEEe--cCCceEEe--eeecCcCccCeEEcCCCc-EEEEeCC---CceEEEe--CC
Q 022967           77 NGPEDVCVDRNGV-LYTATRDGWIKRLH--KNGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT--EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v~~~~g~i~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~g~-l~v~~~~---~~i~~~~--~~  145 (289)
                      ..|..|+++++|+ ||+... +.+..+.  .++.....  ....+.|. .++++++++ +|++...   ..++.+.  .+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            4567899999776 566543 4555554  55654332  23346788 899998885 5665432   2244332  22


Q ss_pred             C--eEEEE-----------eccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCC-CCeE
Q 022967          146 G--VTVLA-----------SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNET  210 (289)
Q Consensus       146 g--~~~~~-----------~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~~~  210 (289)
                      +  ...+.           ....-....++.+++++|||+ +|+++..                 ...|+.++.+ .+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEV  180 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCce
Confidence            2  22111           100111123577999999996 8888754                 2456555422 2333


Q ss_pred             EEe-----eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceee---e--ec-cC----------CCCCCce
Q 022967          211 SIL-----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI---F--VE-NL----------PGGPDNI  269 (289)
Q Consensus       211 ~~~-----~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~---~--~~-~~----------~~~p~~i  269 (289)
                      ...     ......|.+++++|+++.+|++....++|..|+.++.+......   .  .. ..          ...+..|
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            322     12356799999999999999999999999999987654321111   0  00 00          0124468


Q ss_pred             eeCCCCC-EEEEEe
Q 022967          270 KLAPDGS-FWIAIL  282 (289)
Q Consensus       270 ~~d~~G~-lwv~~~  282 (289)
                      .++.+|. +|++..
T Consensus       261 ~~spdG~~lyvsnr  274 (365)
T d1jofa_         261 ALTFSGKYMFASSR  274 (365)
T ss_dssp             EECTTSSEEEEEEE
T ss_pred             EECCCCCEEEEEcc
Confidence            8999995 566653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=1.3e-06  Score=75.55  Aligned_cols=176  Identities=9%  Similarity=-0.030  Sum_probs=105.9

Q ss_pred             CCCEEEEe-cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCCCceEEEe-CCC-eEEEEeccCC-cccc
Q 022967           87 NGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNG-SRIN  160 (289)
Q Consensus        87 ~g~l~v~~-~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~~~i~~~~-~~g-~~~~~~~~~~-~~~~  160 (289)
                      .+.++|+. .+|.|..+| .+++..........|. +++|.+||+ +|++...+.+..+| ..+ .........+ ....
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            33445655 679999999 5676544444456688 999999997 66676656678888 555 3322221111 1122


Q ss_pred             CccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC------------CCCcceEEEec
Q 022967          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFANGVALSK  227 (289)
Q Consensus       161 ~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~------------~~~p~gl~~~~  227 (289)
                      ...++++.|||+ +|++...                 .+.+..+|..+++.......            ......++.++
T Consensus       110 ~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             eEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            233455667996 6666432                 24566777776654433211            11234567788


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       228 d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ++..++++....+.+..++.......... .. .....|.+++++.+|+++....
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~a~  225 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVT-SI-GAAPFLADGGWDSSHRYFMTAA  225 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEE-EE-ECCSSEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeE-Ee-ccCCccEeeeECCCCcEEEeee
Confidence            99989999888888877765433222111 11 2234678899999997665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.60  E-value=3.3e-06  Score=68.56  Aligned_cols=185  Identities=18%  Similarity=0.254  Sum_probs=111.2

Q ss_pred             eEeccCCcCCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEee-eecCcCccCeEEcCCCcEEEEeCCCceEEEe-C
Q 022967           69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWK-LIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (289)
Q Consensus        69 ~~~~~~~~~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~-~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~  144 (289)
                      .++..|=...-.+|++.++|++. .+..+|.|..|+ .+|+..... .....+.+.+++.++|.++++.....+..++ .
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            34444434456778999988865 667889999999 566544332 2223333389999999998887666676666 2


Q ss_pred             CC-e---EEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCc
Q 022967          145 EG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (289)
Q Consensus       145 ~g-~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p  220 (289)
                      .. .   .......    ...+..+++.++|.+.++...                  +.+..++..  +...... ....
T Consensus        85 ~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~~~~~------------------~~i~~~~~~--~~~~~~~-~~~~  139 (299)
T d1nr0a2          85 GSGVDSSKAVANKL----SSQPLGLAVSADGDIAVAACY------------------KHIAIYSHG--KLTEVPI-SYNS  139 (299)
T ss_dssp             SSSSCTTSCCEEEC----SSCEEEEEECTTSSCEEEEES------------------SEEEEEETT--EEEEEEC-SSCE
T ss_pred             Cccccccccccccc----ccccccccccccccccccccc------------------ccccccccc--ccccccc-cccc
Confidence            21 1   1111111    124567889999986665432                  456666643  3333222 2345


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       221 ~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ..++++++++.++++. ..+.|..||+.+.........  ........++.+.+|.+.++.
T Consensus       140 ~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~  197 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVAT  197 (299)
T ss_dssp             EEEEECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            6789999999776664 458899999876533222211  112344567777777655544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=5.3e-06  Score=72.03  Aligned_cols=163  Identities=14%  Similarity=0.098  Sum_probs=103.0

Q ss_pred             eeEeccCCcCCcceEEEccCCC-EEEEecCCeEEEEe-cCCceEEe--eeecCcCccCeE----EcCCCc-EEEEeCC-C
Q 022967           68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENW--KLIGGDTLLGIT----TTQENE-ILVCDAD-K  137 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~-l~v~~~~g~i~~~~-~~g~~~~~--~~~~~~p~~gl~----~d~~g~-l~v~~~~-~  137 (289)
                      +..+..+  ..|.++++.|||+ +|+++.+|.|..++ .+++....  ......+. +++    +.+||+ ||++... .
T Consensus        55 ~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          55 KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCC
Confidence            3455555  4699999999987 56777889999999 34442221  12233344 444    456886 6776543 5


Q ss_pred             ceEEEe-CCC--eEEEEecc---CCc---cccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCC
Q 022967          138 GLLKVT-EEG--VTVLASHV---NGS---RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (289)
Q Consensus       138 ~i~~~~-~~g--~~~~~~~~---~~~---~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  207 (289)
                      .+..+| .++  +..+....   ...   .......+.+++||. ++++..                 ..+.++.++..+
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-----------------~~~~i~~~d~~~  194 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTD  194 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTC
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc-----------------cCCeEEEEEccC
Confidence            577788 555  33332211   000   111234577888885 445533                 247888888765


Q ss_pred             CeEEEe--eCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          208 NETSIL--LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       208 ~~~~~~--~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+...+  ......|.+++++|||+++|++....+.+..++.+..
T Consensus       195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            543222  2334678999999999999999988889998887643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.54  E-value=6.7e-06  Score=71.21  Aligned_cols=201  Identities=13%  Similarity=0.120  Sum_probs=115.4

Q ss_pred             CCcCCcceEEEc--cCCC-EEEEe-cCCeEEEEe-cCCceEEeee--ecCcCccCeEEcCCCc-EEEEeCC-Cce-----
Q 022967           74 GILNGPEDVCVD--RNGV-LYTAT-RDGWIKRLH-KNGTWENWKL--IGGDTLLGITTTQENE-ILVCDAD-KGL-----  139 (289)
Q Consensus        74 ~~~~~p~~l~~d--~~g~-l~v~~-~~g~i~~~~-~~g~~~~~~~--~~~~p~~gl~~d~~g~-l~v~~~~-~~i-----  139 (289)
                      +...+|.....+  +||+ ||+.+ .+++|.++| .+++......  .+..|+ |+++.++|+ +||+... ..+     
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCc
Confidence            334567555543  4675 78776 778999999 5666555443  256788 999998885 6776432 222     


Q ss_pred             -------------EEEeC-CC-e-EEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcc---------ccc-----
Q 022967          140 -------------LKVTE-EG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLH---------NWG-----  188 (289)
Q Consensus       140 -------------~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~---------~~~-----  188 (289)
                                   ..+|. .. + ..+.  ..    ..+.++++++||. +|++.........         ++.     
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~--v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVI--VD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEE--ES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccccccccccceEEeecCccceeeEEEe--cC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                         12331 11 1 1111  11    2578999999995 7777644221110         000     


Q ss_pred             -c--------ccceecCCCEEEEEeC-CCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC------CCC
Q 022967          189 -L--------DLLEAKPHGKLLKYDP-SLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG------ESK  252 (289)
Q Consensus       189 -~--------~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~------~~~  252 (289)
                       .        ....... ..+..++. .+.+..........|.|+.++|||+++|++......|.+||++.      .++
T Consensus       220 p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             HHHHHHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             cceEEEecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence             0        0011111 22344443 22233334445577999999999999999999999999999752      112


Q ss_pred             cceeeee--ccCCCCCCceeeCCCCCEEEEEe
Q 022967          253 EQTEIFV--ENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       253 ~~~~~~~--~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .......  ..+.-.|..-++|.+|+.|.+..
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~  330 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF  330 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred             CcceEEEeecccccCcccceecCCceEEEccc
Confidence            1111111  11222355568999999998753

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=7e-06  Score=67.80  Aligned_cols=182  Identities=7%  Similarity=-0.068  Sum_probs=103.7

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceE-EeeeecCcCccCeEEcCCCcEEEEe-CCCceEEEe-CCC--e-EEE
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--V-TVL  150 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~l~v~~-~~~~i~~~~-~~g--~-~~~  150 (289)
                      .|..++.+++|+.++...++.|+.++ .++... .+........ .+++.++|++.++. .++.|..++ .++  . ...
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence            46678999988877555567788888 444433 3332233344 89999999876654 334466666 433  2 221


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDE  229 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~  229 (289)
                      .....    ....++++.++|.++++....               ....+..++.++++... +.........++|+|++
T Consensus        98 ~~~~~----~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          98 IPVFS----GPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             EECSS----SCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred             ccccc----Ccccccccccccccccccccc---------------ccccccccccccccccccccccccccccccccccc
Confidence            11111    246789999999876654320               01123334444443322 22223345778999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      +.++++....+.|..||......   .............+..+++|++.++..
T Consensus       159 ~~~l~sgs~d~~i~i~d~~~~~~---~~~~~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         159 PFRIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             SCEEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeccccccccccccccccccc---ccccccccccccccccCcccccccccc
Confidence            97777766667899998764221   111111122345677777777655443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.53  E-value=6.1e-06  Score=67.57  Aligned_cols=148  Identities=9%  Similarity=-0.002  Sum_probs=95.2

Q ss_pred             EEEEecCCeEEEEe-cCCceEEeee---ecCcCccCeEEcCCCc-EEEEeCC-CceEEEe-CCC--eEEEEeccCCcccc
Q 022967           90 LYTATRDGWIKRLH-KNGTWENWKL---IGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRIN  160 (289)
Q Consensus        90 l~v~~~~g~i~~~~-~~g~~~~~~~---~~~~p~~gl~~d~~g~-l~v~~~~-~~i~~~~-~~g--~~~~~~~~~~~~~~  160 (289)
                      ++++..+++|..+| .+++......   ....|. ++++++||+ +|++... +.|..+| .+|  +..+..........
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            45667889999999 5565443222   235688 999999996 6777644 4588888 667  33332222222334


Q ss_pred             CccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       161 ~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      .+.++++.|||. +|++.....      ............+..+|..+++..........+.++++++|++++|++..  
T Consensus        83 ~~~~v~~s~dg~~l~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--  154 (337)
T d1pbyb_          83 SLFGAALSPDGKTLAIYESPVR------LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--  154 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEE------ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--
T ss_pred             ceeeEEEcCCCcEEEEeecCCc------ceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--
Confidence            678999999985 666543210      00111122345677888887776655555677899999999999998743  


Q ss_pred             CeEEEEEe
Q 022967          240 FRCLKYWL  247 (289)
Q Consensus       240 ~~i~~~~~  247 (289)
                       .+..+|.
T Consensus       155 -~~~~~d~  161 (337)
T d1pbyb_         155 -DLHVMDP  161 (337)
T ss_dssp             -SEEEEET
T ss_pred             -Ccceeee
Confidence             3445554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=4e-06  Score=69.03  Aligned_cols=138  Identities=15%  Similarity=0.102  Sum_probs=85.2

Q ss_pred             CeEEcCCCcEEEE-eCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceec
Q 022967          121 GITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAK  195 (289)
Q Consensus       121 gl~~d~~g~l~v~-~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~  195 (289)
                      |+++.++|+++++ ...+.|..+| +++  +..+..  +.  ...|.+++++|||+ +|++...                
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~--~~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PD--KFGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SS--CCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CC--CCCcceEEECCCCCEEEEEECC----------------
Confidence            6788888876664 5556799999 666  333321  11  13578999999995 7787643                


Q ss_pred             CCCEEEEEeCCCCeEEEeeC-C------CCCcceEEEecCCCEEEEEeC-----------CCCeEEEEEecCCCCc-cee
Q 022967          196 PHGKLLKYDPSLNETSILLD-S------LFFANGVALSKDEDYLVVCET-----------FKFRCLKYWLKGESKE-QTE  256 (289)
Q Consensus       196 ~~g~i~~~~~~~~~~~~~~~-~------~~~p~gl~~~~d~~~l~v~~~-----------~~~~i~~~~~~~~~~~-~~~  256 (289)
                       .+.|..+|.++++...... .      ...|.++++++||+++|++..           ....+..++....... ...
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             4789999998876543221 1      245789999999999999864           2455666765532221 111


Q ss_pred             eeeccCCCCCCceeeCCCCCEEEEE
Q 022967          257 IFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       257 ~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ..  ..+.....+....++.+++..
T Consensus       140 ~~--~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         140 TF--PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EE--ECCSSCCCEEECTTSCEEEES
T ss_pred             ee--eccCceEEEEecCCCEEEEeC
Confidence            11  111223334455666776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.41  E-value=1.5e-05  Score=64.53  Aligned_cols=176  Identities=15%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEecCCc-----eEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEeCCCeEEEEec
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASH  153 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~~~g~-----~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~~~g~~~~~~~  153 (289)
                      -.++++.++|.++++..++.+..++..+.     ..........+. .+++.++|++.++.....+..++..........
T Consensus        58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~  136 (299)
T d1nr0a2          58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS  136 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred             EEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            46788999999998888898988883321     111122234556 888888888777665555666653222211111


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe--eCCCCCcceEEEecCCCE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKDEDY  231 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~~~p~gl~~~~d~~~  231 (289)
                            .....+++.+++.+.++...                 .+.|..+|.++++...+  .........++++++++.
T Consensus       137 ------~~~~~~~~s~~~~~l~~g~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (299)
T d1nr0a2         137 ------YNSSCVALSNDKQFVAVGGQ-----------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  193 (299)
T ss_dssp             ------SCEEEEEECTTSCEEEEEET-----------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ------cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccc
Confidence                  23456888999876554322                 36777777665654332  222344578899999997


Q ss_pred             EEEEeCCCCeEEEEEecCCCC-cceeeeeccCCCCCCceeeCCCCCEEEE
Q 022967          232 LVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (289)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~G~lwv~  280 (289)
                      |+.+. ..+.|..|+...... .....+. ........++..++|.+.++
T Consensus       194 l~~~~-~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         194 LVATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEE
T ss_pred             ccccc-ccccccccccccccccccccccc-ccccccccccccccccceEE
Confidence            76664 457899998764321 1111111 11122345677777765544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=1.7e-05  Score=65.53  Aligned_cols=142  Identities=7%  Similarity=0.016  Sum_probs=90.6

Q ss_pred             Ecc-CCCEEEEecCCeEEEEec-CCceEEeeeecCcCccCeEEcCCCcE-EEEeCCC--ceEEEe-CCC-eEEEEeccCC
Q 022967           84 VDR-NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEI-LVCDADK--GLLKVT-EEG-VTVLASHVNG  156 (289)
Q Consensus        84 ~d~-~g~l~v~~~~g~i~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~l-~v~~~~~--~i~~~~-~~g-~~~~~~~~~~  156 (289)
                      +.| ||++++...+|.|+.++. .|....+ ....... .++|.+||+. +++....  .++.++ .+| .+.+...   
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~---   84 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN---   84 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC---
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC---
Confidence            456 888887677789999994 4455444 2344556 8999999964 4443333  366677 555 5443221   


Q ss_pred             ccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee-CCCCCcceEEEecCCCEEEEE
Q 022967          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVC  235 (289)
Q Consensus       157 ~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~p~gl~~~~d~~~l~v~  235 (289)
                        ......+++.|||+..++...                 .+.++.++.++++..... ........++|+|||++|.++
T Consensus        85 --~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          85 --LGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             --CCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             --CceEEeeeecccccccceecc-----------------ccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence              124668999999975554322                 367888888877655443 334455789999999988765


Q ss_pred             eC---------CCCeEEEEEecC
Q 022967          236 ET---------FKFRCLKYWLKG  249 (289)
Q Consensus       236 ~~---------~~~~i~~~~~~~  249 (289)
                      ..         ..+.++.++..+
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~  168 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEG  168 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTT
T ss_pred             ccccccceeeccccceeeecccc
Confidence            42         123466676654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.37  E-value=6e-06  Score=72.17  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=98.2

Q ss_pred             ceEEeeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEEeccC----CccccCccceEEcCC----CcEEE
Q 022967          107 TWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVN----GSRINLADDLIAATD----GSIYF  175 (289)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~~~~~----~~~~~~~~~l~~~~d----G~lyv  175 (289)
                      +.+.+......|. +|++.+||+|||++.. ..|++++ .++ .+.+.....    ........+|+++|+    +.||+
T Consensus        18 ~~~~ia~~L~~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            4566677778899 9999999999999964 5588888 566 555443211    112234568999885    78999


Q ss_pred             eeCCCccCccccccccceecCCCEEEEE--eCCCCeE---EEee-----CCCCCcceEEEecCCCEEEEEeCC-------
Q 022967          176 SVASTKFGLHNWGLDLLEAKPHGKLLKY--DPSLNET---SILL-----DSLFFANGVALSKDEDYLVVCETF-------  238 (289)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~~---~~~~-----~~~~~p~gl~~~~d~~~l~v~~~~-------  238 (289)
                      +-.......  .....   .....+.++  +......   +.+.     ....+-..|+|++|+. ||++--.       
T Consensus        97 syt~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~  170 (450)
T d1crua_          97 SGTFKNPKS--TDKEL---PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (450)
T ss_dssp             EEEEECTTC----CCS---CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEecCCCCC--ccccc---ccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccc
Confidence            743100000  00000   000123332  3222211   1111     1224456799999997 9997432       


Q ss_pred             -------------------------CCeEEEEEecCCCCcc--------eeeeeccCCCCCCceeeCCCCCEEEEEeC
Q 022967          239 -------------------------KFRCLKYWLKGESKEQ--------TEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (289)
Q Consensus       239 -------------------------~~~i~~~~~~~~~~~~--------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  283 (289)
                                               ..+|.|++.++.....        .+.+...+- .|-++++|.+|+||++.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~R-Np~g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEEC
T ss_pred             ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccc-cccceeecccceeeecccc
Confidence                                     2678888877642211        133433332 3778999999999999875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.1e-05  Score=61.13  Aligned_cols=174  Identities=9%  Similarity=-0.050  Sum_probs=103.9

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC--eEEEEec
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g--~~~~~~~  153 (289)
                      ..+++.+++.+. ++..++.|..++ .+++..........+.+.+++.+++..++ +.....+..++ .++  +..+.  
T Consensus       145 ~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--  222 (337)
T d1gxra_         145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--  222 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc--
Confidence            346677777665 455677788887 44544333322223322788888876444 44445566777 556  33331  


Q ss_pred             cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEE
Q 022967          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~  233 (289)
                      ..    ..+..+++++++.+.++...                 .+.+..+|.++++.............++|+|+++.|+
T Consensus       223 ~~----~~i~~l~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~  281 (337)
T d1gxra_         223 FT----SQIFSLGYCPTGEWLAVGME-----------------SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             CS----SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cc----cceEEEEEcccccccceecc-----------------ccccccccccccccccccccccccceEEECCCCCEEE
Confidence            11    24568899999976554322                 3667888877666544444444567899999999665


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEE
Q 022967          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      .+ ...+.|..|+.......  ..+  ...+....+++..+|++.++.
T Consensus       282 s~-s~Dg~i~iwd~~~~~~~--~~~--~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         282 ST-GKDNLLNAWRTPYGASI--FQS--KESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             EE-ETTSEEEEEETTTCCEE--EEE--ECSSCEEEEEECTTSCEEEEE
T ss_pred             EE-eCCCeEEEEECCCCCEE--EEc--cCCCCEEEEEEeCCCCEEEEE
Confidence            55 45588999987643211  111  112345567788888765543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=0.00014  Score=60.02  Aligned_cols=177  Identities=7%  Similarity=0.001  Sum_probs=107.1

Q ss_pred             cceEEEccCCCEE-EEecCCeEEEEecCC---ceEE-eeeecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEE
Q 022967           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG---TWEN-WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL  150 (289)
Q Consensus        79 p~~l~~d~~g~l~-v~~~~g~i~~~~~~g---~~~~-~~~~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~  150 (289)
                      -.++++.++|+.. ++..+|.|..++...   +... +........ .+++++++.++++ .....+..++ .++ ....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            3578999988765 667889999998332   2221 111122334 6788888876665 4335577777 555 3222


Q ss_pred             EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC
Q 022967          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (289)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~  230 (289)
                      ....    ......+++.+++...++..                 ..+.+..+|.++++.............++++|+++
T Consensus       179 ~~~~----~~~v~~l~~s~~~~~~~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         179 FQGH----TDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             ECCC----SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccc----cccccccccccccccccccc-----------------ccccccccccccceeecccccccceEEEEEccccc
Confidence            2211    12456788999986554432                 23678888887766544434444567889999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .++++. ..+.+..|++.....  ....  ........+++.++|++.++..
T Consensus       238 ~l~~~~-~d~~i~i~d~~~~~~--~~~~--~~~~~i~~v~~s~~g~~l~s~s  284 (337)
T d1gxra_         238 WLAVGM-ESSNVEVLHVNKPDK--YQLH--LHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             EEEEEE-TTSCEEEEETTSSCE--EEEC--CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceec-ccccccccccccccc--cccc--ccccccceEEECCCCCEEEEEe
Confidence            777664 457899998764322  1111  1123345677788887666544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.30  E-value=0.00015  Score=60.22  Aligned_cols=187  Identities=11%  Similarity=0.031  Sum_probs=102.5

Q ss_pred             CCcceEEEccCCC-EEE-EecCCeEEEEe-cCCceEEeeee-----c--CcCccCeEEcCCCcEEEEeCCCceEEEe-CC
Q 022967           77 NGPEDVCVDRNGV-LYT-ATRDGWIKRLH-KNGTWENWKLI-----G--GDTLLGITTTQENEILVCDADKGLLKVT-EE  145 (289)
Q Consensus        77 ~~p~~l~~d~~g~-l~v-~~~~g~i~~~~-~~g~~~~~~~~-----~--~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~  145 (289)
                      ..|.++++.++|. +|+ ...++.+..++ .++........     .  .... .+..+.++.+.....+..++.++ .+
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcCC
Confidence            4577788888664 554 44778888887 33333222111     1  1123 44555555433333335566666 33


Q ss_pred             C-eEEEEec--cCC------ccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC
Q 022967          146 G-VTVLASH--VNG------SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (289)
Q Consensus       146 g-~~~~~~~--~~~------~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  215 (289)
                      + .......  ...      ........+++.++|. +|+.....        .........+.+..+|..+++......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~v~~~d~~t~~~~~~~~  315 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ--------SAWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC--------ceEEeecCCCeEEEEECCCCcEEEEec
Confidence            3 2222110  000      0011234567777774 55443210        011122234568888887776555445


Q ss_pred             CCCCcceEEEecCCCE-EEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967          216 SLFFANGVALSKDEDY-LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (289)
Q Consensus       216 ~~~~p~gl~~~~d~~~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  275 (289)
                      ....+.+++|+|||+. ||++....+.|++||....+.  . .-+......|..|++..++
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~-~~~~~~g~~P~~l~~~~~~  373 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--D-QSTVELGSGPQVLSVMNEA  373 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--E-EEECCCCCCCcEEEEecCC
Confidence            5567899999999986 577888888999999875432  1 2232344678888887653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.26  E-value=3.6e-06  Score=69.31  Aligned_cols=103  Identities=9%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCCEEEEEeCCCCe
Q 022967          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETFKFR  241 (289)
Q Consensus       164 ~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~~l~v~~~~~~~  241 (289)
                      |+++.++|..+++...                 .+.|..+|.++++.....  .....|.+++++|||+++|++....+.
T Consensus         1 g~a~~~~~~~l~~~~~-----------------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNY-----------------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEET-----------------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcC-----------------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            4577888876665432                 468999999988765432  345679999999999999999988899


Q ss_pred             EEEEEecCCCCcceeeeec---cCCCCCCceeeCCCCC-EEEEEeC
Q 022967          242 CLKYWLKGESKEQTEIFVE---NLPGGPDNIKLAPDGS-FWIAILQ  283 (289)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~G~-lwv~~~~  283 (289)
                      |..||+...+.........   .....|.+++++.||. +|++...
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecC
Confidence            9999987543221111000   0112578899999984 7777643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=6.6e-05  Score=61.65  Aligned_cols=180  Identities=12%  Similarity=0.106  Sum_probs=104.6

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCc--eEE-eeeecCcCccCeEEcCCCcEEEEeCC--Cc-eEEEe-CCC-
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT--WEN-WKLIGGDTLLGITTTQENEILVCDAD--KG-LLKVT-EEG-  146 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~--~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~--~~-i~~~~-~~g-  146 (289)
                      ..-.++++.|+|++. ++..+|.|..|+ .++.  ... +....+... .+++.+++.++++...  .+ +..++ +.+ 
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccccccc
Confidence            445778899999876 667899999998 3332  222 222223345 8999999886655322  22 33444 444 


Q ss_pred             -eEEEEeccCCccccCccceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceE
Q 022967          147 -VTVLASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGV  223 (289)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl  223 (289)
                       ...+    .+ .......+++.|+|.. +++..                 ..+.|..+|.++++....... ......+
T Consensus       138 ~~~~l----~~-h~~~v~~v~~~~~~~~~l~sgs-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         138 SNGNL----TG-QARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             BCBCC----CC-CSSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             ccccc----cc-cccccccccccccceeeecccc-----------------ccccccccccccccccccccccccccccc
Confidence             2221    11 1124578899999864 44322                 236688888877665554444 3344789


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec---cC---CCCCCceeeCCCCCEEEEEe
Q 022967          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE---NL---PGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       224 ~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~---~~~p~~i~~d~~G~lwv~~~  282 (289)
                      +++|+++.++.+. ..+.|..|+......  ...+..   ..   .+....+++..+|++.++..
T Consensus       196 ~~~p~~~~l~~~~-~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         196 RYNPDGSLFASTG-GDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             EECTTSSEEEEEE-TTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCcccccccccc-ccccccccccccccc--cccccccccccccccccccccccCCCCCEEEEEe
Confidence            9999999666654 457888888754321  111110   00   12234577788887655543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=2.3e-05  Score=63.96  Aligned_cols=128  Identities=24%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             EEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeC
Q 022967          130 ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       130 l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                      ++.+...+.|..+| +++  +..+....   ....+.+++++|||+ +|++...                 .+.|..+|.
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~---~~~~~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D~   63 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----------------SESLVKIDL   63 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----------------TTEEEEEET
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCC---CCCCccEEEECCCCCEEEEEECC-----------------CCeEEEEEC
Confidence            34445446788888 666  33332211   123578999999996 6777532                 478999999


Q ss_pred             CCCeEEEeeCC------CCCcceEEEecCCCEEEEEeC-----------CCCeEEEEEecCCCCcceeeeeccCCCCCCc
Q 022967          206 SLNETSILLDS------LFFANGVALSKDEDYLVVCET-----------FKFRCLKYWLKGESKEQTEIFVENLPGGPDN  268 (289)
Q Consensus       206 ~~~~~~~~~~~------~~~p~gl~~~~d~~~l~v~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~  268 (289)
                      ++++.......      ...+.+++++||++.+|++..           ....+..+|......  ...+  .....|.+
T Consensus        64 ~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~--~~~~~~~~  139 (337)
T d1pbyb_          64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAF--EAPRQITM  139 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEE--ECCSSCCC
T ss_pred             CCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEec--cccCCceE
Confidence            88775432211      245678999999999998864           234555565443211  1111  22356889


Q ss_pred             eeeCCCCC-EEEEE
Q 022967          269 IKLAPDGS-FWIAI  281 (289)
Q Consensus       269 i~~d~~G~-lwv~~  281 (289)
                      ++++.+|. +|++.
T Consensus       140 ~~~s~dg~~l~~~~  153 (337)
T d1pbyb_         140 LAWARDGSKLYGLG  153 (337)
T ss_dssp             EEECTTSSCEEEES
T ss_pred             EEEcCCCCEEEEEc
Confidence            99999995 55554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=7.2e-05  Score=62.71  Aligned_cols=97  Identities=10%  Similarity=0.006  Sum_probs=62.1

Q ss_pred             ccceEEcCCC-cEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCC-EEEEEeCCC
Q 022967          162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCETFK  239 (289)
Q Consensus       162 ~~~l~~~~dG-~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~-~l~v~~~~~  239 (289)
                      ...+++.+++ .+|+.....         ..........|+.+|.++++..........+.+++++|||+ .||++....
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~---------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEH---------SRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEEC---------SSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             ceeEEEcCCCCEEEEEecCC---------CceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence            3467888876 466653210         00011122468889998776544433345678899999997 589998888


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCceee
Q 022967          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (289)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~  271 (289)
                      +.|++||..+.+.   ...+ .++..|..|++
T Consensus       337 ~~v~v~D~~tgk~---~~~i-~~g~~P~~l~~  364 (368)
T d1mdah_         337 EVLDIYDAASDQD---QSSV-ELDKGPESLSV  364 (368)
T ss_dssp             TEEEEEESSSCEE---EEEC-CCCSCCCEEEC
T ss_pred             CeEEEEECCCCCE---EEEE-ECCCCCCEEEE
Confidence            9999999765322   1122 34567888886

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.12  E-value=4.9e-05  Score=63.62  Aligned_cols=105  Identities=10%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             eeEeccCCcCCcceEEEccCCCEEEEec------------------CCeEEEEecCCceEEeeeecCcCccCeEEcCCC-
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVLYTATR------------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-  128 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l~v~~~------------------~g~i~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-  128 (289)
                      +..+....+..|.+|++..+|.+|+++.                  .+.++.++ .++.+........|+ ||++++|+ 
T Consensus       141 ~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-~~~~~~~~~~l~~pN-GI~~s~d~~  218 (340)
T d1v04a_         141 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PNDVRVVAEGFDFAN-GINISPDGK  218 (340)
T ss_dssp             EEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-SSCEEEEEEEESSEE-EEEECTTSS
T ss_pred             EeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-CCceEEEcCCCCccc-eeEECCCCC
Confidence            3344444577899999999999998741                  23455554 344555556678899 99999887 


Q ss_pred             cEEEEeCC-CceEEEe--CCC-eEEEEe-ccCCccccCccceEEcC-CCcEEEeeC
Q 022967          129 EILVCDAD-KGLLKVT--EEG-VTVLAS-HVNGSRINLADDLIAAT-DGSIYFSVA  178 (289)
Q Consensus       129 ~l~v~~~~-~~i~~~~--~~g-~~~~~~-~~~~~~~~~~~~l~~~~-dG~lyv~~~  178 (289)
                      .|||++.. .+|.+++  .++ .+.... ..+    ..|..|.+|+ +|.+|++..
T Consensus       219 ~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         219 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEEC
Confidence            59999865 5577776  344 332211 222    3588999986 789999854

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=0.00027  Score=60.45  Aligned_cols=164  Identities=12%  Similarity=0.041  Sum_probs=95.7

Q ss_pred             eeEeccCCcCCcceEEEccCCCE-EEEecCCeEEEEe-cCCceEEee--eecCcCc---cCeEEcCCCc-EEEEeCC-Cc
Q 022967           68 VTRLGEGILNGPEDVCVDRNGVL-YTATRDGWIKRLH-KNGTWENWK--LIGGDTL---LGITTTQENE-ILVCDAD-KG  138 (289)
Q Consensus        68 ~~~~~~~~~~~p~~l~~d~~g~l-~v~~~~g~i~~~~-~~g~~~~~~--~~~~~p~---~gl~~d~~g~-l~v~~~~-~~  138 (289)
                      +..+..+  ..|.++++.|||+. |++..++.|..++ .+++.....  ..+..+.   .++++.+||+ ++++... +.
T Consensus        55 ~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          55 VKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             EEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCe
Confidence            3445444  56999999999884 5777889999999 445433221  2222233   0445557886 6676543 44


Q ss_pred             eEEEe-CCC-e-EEEEeccC---Ccc---ccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCC
Q 022967          139 LLKVT-EEG-V-TVLASHVN---GSR---INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (289)
Q Consensus       139 i~~~~-~~g-~-~~~~~~~~---~~~---~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  208 (289)
                      +..+| ..+ . ..+.....   ...   ......++..+++. +|++..                 ..+.+..++....
T Consensus       133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~  195 (426)
T d1hzua2         133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDI  195 (426)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECSSS
T ss_pred             EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------------CCCeEEEEEeccc
Confidence            66666 455 3 22221110   000   01123456666664 444432                 2355655554433


Q ss_pred             eE--EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          209 ET--SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       209 ~~--~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      ..  .........+.++++++++++++++....+.+..++....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         196 DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence            21  1223445678999999999999999998899998887643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.00036  Score=58.31  Aligned_cols=182  Identities=10%  Similarity=-0.055  Sum_probs=96.2

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEee--ee-cCcCccCeEEcCCCcEEEEeCCCc-e--EEEeCCC-eE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWK--LI-GGDTLLGITTTQENEILVCDADKG-L--LKVTEEG-VT  148 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~--~~-~~~p~~gl~~d~~g~l~v~~~~~~-i--~~~~~~g-~~  148 (289)
                      .-.+|++.|+|++. ++..++.|..++ .++......  .. ..... .+.++++++.+++....+ +  +.++... ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            35778999988866 556788899988 344433222  11 22344 889999987555433333 3  3334222 22


Q ss_pred             EEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe------------------E
Q 022967          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------------T  210 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~------------------~  210 (289)
                      ........ -......+++.|+|.+.++...                 .+.+..++...+.                  .
T Consensus       132 ~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         132 VCKHIKKP-IRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEEEECTT-CCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             cccccccc-cccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceee
Confidence            22211111 1124567889999987665322                 2334444432211                  1


Q ss_pred             -EEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEe
Q 022967          211 -SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       211 -~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                       ...........+++|+|+++.|+.+. ..+.|..||......  ...+. ....-...++...+|.+.++..
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~--~~~~~-~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMA--VATLA-SETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTE--EEEEE-CSSCCEEEEEEEETTEEEEEET
T ss_pred             eeeccCccCcEEEEEeecccccccccc-cCCcceEEeeecccc--eeeee-cccccceeeeecCCCCEEEEEc
Confidence             11112223346789999999776664 458899999764321  11111 1111123456666666555543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.03  E-value=0.00021  Score=57.89  Aligned_cols=143  Identities=8%  Similarity=0.036  Sum_probs=86.1

Q ss_pred             EEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC--eEEEEecc
Q 022967           82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVLASHV  154 (289)
Q Consensus        82 l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g--~~~~~~~~  154 (289)
                      ....+.+.++ .+..++.|..++ .+++... +........ .++++++|+++++... ..+..++ ...  ...+... 
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-  267 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-  267 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-
Confidence            4444556665 556788888888 4554333 222223344 8999999886665433 4466666 433  2222111 


Q ss_pred             CCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-CCCcceEEEecCCCEEE
Q 022967          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLV  233 (289)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~~~p~gl~~~~d~~~l~  233 (289)
                        ........+++.++|.+.++...                 .+.|..+|..+++......+ ......++|+|+++.|+
T Consensus       268 --~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         268 --NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             --TCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             --cccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence              11234568899999986665432                 36788888876665444333 33457899999999665


Q ss_pred             EEeCCCCeEEEEE
Q 022967          234 VCETFKFRCLKYW  246 (289)
Q Consensus       234 v~~~~~~~i~~~~  246 (289)
                      .+ ...+.|..||
T Consensus       329 s~-s~Dg~v~iWd  340 (340)
T d1tbga_         329 TG-SWDSFLKIWN  340 (340)
T ss_dssp             EE-ETTSCEEEEC
T ss_pred             EE-ccCCEEEEeC
Confidence            55 4456677664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=7.3e-05  Score=61.52  Aligned_cols=130  Identities=8%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             EcC-CCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCE
Q 022967          124 TTQ-ENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK  199 (289)
Q Consensus       124 ~d~-~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~  199 (289)
                      |.+ ||+++++.....++.++ .+| ...+..      .....++++.|||+ |+++...                ....
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~------~~~v~~~~~spDg~~l~~~~~~----------------~g~~   67 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE------PLRIRYVRRGGDTKVAFIHGTR----------------EGDF   67 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECSC------CSCEEEEEECSSSEEEEEEEET----------------TEEE
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEccC------CCCEEEEEECCCCCEEEEEEcC----------------CCCE
Confidence            555 78776665556688888 555 443311      12467899999996 4444221                1135


Q ss_pred             EEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEE
Q 022967          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       200 i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  279 (289)
                      |+.+|.++++...+.........++|+||+++|..+. ..+.++.++.++....   ............++...+|.+.+
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPT---VIERSREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE---EEEECSSSCCCCEEECTTSCEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeecccccccceec-ccccccccccccccee---eeeecccccccchhhccceeeee
Confidence            7888998888887766666778899999999777664 4588888887654321   11212223455677888886544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.0005  Score=56.38  Aligned_cols=145  Identities=10%  Similarity=-0.107  Sum_probs=85.0

Q ss_pred             cCC-CEEEEe-----cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC----------CceEEEe-CCC
Q 022967           86 RNG-VLYTAT-----RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD----------KGLLKVT-EEG  146 (289)
Q Consensus        86 ~~g-~l~v~~-----~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~----------~~i~~~~-~~g  146 (289)
                      ||| ++|+.+     ..+.|+.+| ..|+...... .+... ++++.+||+ ||+++..          ..|..+| .++
T Consensus        11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_          11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            455 467764     235689998 4565443322 34444 799999996 8887531          2477778 566


Q ss_pred             -e-EEEEeccCC--ccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC-----
Q 022967          147 -V-TVLASHVNG--SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----  216 (289)
Q Consensus       147 -~-~~~~~~~~~--~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-----  216 (289)
                       . ..+......  .-...+..+++.+||+ +|+....                ....+..++..+++.......     
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          89 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcce
Confidence             3 333221111  1123577899999985 6776533                123455666665543322111     


Q ss_pred             ---CCCcceEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          217 ---LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       217 ---~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                         ......+++++|++.+++.......+..++..
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence               12234578899999999887777777776654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.01  E-value=0.0014  Score=54.54  Aligned_cols=152  Identities=7%  Similarity=0.003  Sum_probs=89.1

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEec-CCceEEeee--ecCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC-eEEEEe
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKL--IGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~~-~g~~~~~~~--~~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      .+++++++|++. ++..++.|..|+. .++......  ....+.+.++|.+++++.++ ..+..+..++ .++ .+....
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence            688999999877 5667888999984 454433322  11233338999999886665 3334466666 445 332221


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE--eeCCC-CCcceEEEecCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSL-FFANGVALSKDE  229 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~-~~p~gl~~~~d~  229 (289)
                      . .+ ....+..+.+.|+|+..++...               ...-+++.++........  ..... .....++|+|++
T Consensus        91 ~-~~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          91 I-LR-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             C-CC-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             c-cc-ccccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccccc
Confidence            1 11 1134678899999975554322               122356666655333221  11222 234678999999


Q ss_pred             CEEEEEeCCCCeEEEEEecC
Q 022967          230 DYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.|..+ ...+.|..|+...
T Consensus       154 ~~l~s~-s~D~~v~v~~~~~  172 (371)
T d1k8kc_         154 VLLAAG-SCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEEEE-ETTSCEEEEECCC
T ss_pred             cceecc-ccCcEEEEEeecc
Confidence            966544 4557888888653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.97  E-value=0.0012  Score=54.47  Aligned_cols=149  Identities=7%  Similarity=-0.151  Sum_probs=86.7

Q ss_pred             EEEccCC-CEEEEe-----cCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCc-EEEEeCC----------CceEEEe
Q 022967           82 VCVDRNG-VLYTAT-----RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD----------KGLLKVT  143 (289)
Q Consensus        82 l~~d~~g-~l~v~~-----~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-l~v~~~~----------~~i~~~~  143 (289)
                      +++.|+| ++|+..     ..++|+.+| .+|+..... ..+... ++++.+||+ ||++...          +.+..+|
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence            3455655 466643     235688888 566644322 234455 799999995 6666432          2255566


Q ss_pred             -CCC-e-EEEEeccCC--ccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCC
Q 022967          144 -EEG-V-TVLASHVNG--SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (289)
Q Consensus       144 -~~g-~-~~~~~~~~~--~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  217 (289)
                       .++ . ..+......  .....+.++.+.+||+ +|+....                ..+.+..++....+..   ...
T Consensus       104 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~---~~~  164 (373)
T d2madh_         104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSDD---QLL  164 (373)
T ss_pred             CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeEE---EEe
Confidence             444 2 222111000  0122456788888874 5554321                1234455555444332   223


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      ..+.+++++++++.+|++....+.+.+++..+..
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            4577889999999999999888999999876543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=0.002  Score=53.28  Aligned_cols=181  Identities=11%  Similarity=-0.001  Sum_probs=98.0

Q ss_pred             CcceEEEccCCCEEEEecCCeEEEEe-cCCceEE-eee------------------ecCcCccCeEEcCCCcEEEEeCCC
Q 022967           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKL------------------IGGDTLLGITTTQENEILVCDADK  137 (289)
Q Consensus        78 ~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~-~~~------------------~~~~p~~gl~~d~~g~l~v~~~~~  137 (289)
                      .-.+|+++++|++.++..++.|..|+ .+|+... +..                  ...... .+++.++|+++++....
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            35679999999987554578899888 4554321 110                  001123 68899998766654344


Q ss_pred             -ceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee
Q 022967          138 -GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (289)
Q Consensus       138 -~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  214 (289)
                       .+..++ ..+ ........    ......+.+.+++...++...                 .+.+..+|..+.......
T Consensus       143 g~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccc----ccccccccccccccccccccc-----------------ceeeeeeecccccccccc
Confidence             455556 445 22211111    123567788888765444322                 367778888766554444


Q ss_pred             CCCCCcceEEEec-CCCEEEEEeCCCCeEEEEEecCCCCcc-eeeeec---cCCCCCCceeeCCCCCEEEEE
Q 022967          215 DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVE---NLPGGPDNIKLAPDGSFWIAI  281 (289)
Q Consensus       215 ~~~~~p~gl~~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~---~~~~~p~~i~~d~~G~lwv~~  281 (289)
                      ........+.+.+ +++.|+.+ ...+.|..++........ ......   ...+....+++..+|.+.++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  272 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  272 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccCCCCCeEEEE-cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            4444445556655 66644444 455778888876432211 110000   111223456777777655543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.00081  Score=57.04  Aligned_cols=203  Identities=13%  Similarity=0.115  Sum_probs=112.5

Q ss_pred             cCCcCCcceEEEcc---CCC-EEEEe-cCCeEEEEec-CCceEEeeee--cCcCccCeEEcCCC-cEEEEeCC-C-----
Q 022967           73 EGILNGPEDVCVDR---NGV-LYTAT-RDGWIKRLHK-NGTWENWKLI--GGDTLLGITTTQEN-EILVCDAD-K-----  137 (289)
Q Consensus        73 ~~~~~~p~~l~~d~---~g~-l~v~~-~~g~i~~~~~-~g~~~~~~~~--~~~p~~gl~~d~~g-~l~v~~~~-~-----  137 (289)
                      .|...+| .+.+..   ||+ ||+.+ .++||.+++. +-+...+...  ...++ |+....++ ..||.... .     
T Consensus        82 ~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          82 NGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLV  159 (459)
T ss_dssp             CCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESS
T ss_pred             CCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccC
Confidence            4567888 455543   565 66766 7899999994 4455444432  34567 88876554 35665311 1     


Q ss_pred             -------------c-eEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcc---------ccc---
Q 022967          138 -------------G-LLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLH---------NWG---  188 (289)
Q Consensus       138 -------------~-i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~---------~~~---  188 (289)
                                   + +..+| ... +..-+. ..    ..+.++.+++||+ +|++...+..+..         ++.   
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~  234 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VS----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  234 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             CCCccccchhhcceEEEEEecCCceEEEEee-eC----CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEe
Confidence                         1 22344 333 211111 12    1467899999997 4555433322211         000   


Q ss_pred             -----cccc-e--ecCCCEEEEEeCCC---CeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecC------CC
Q 022967          189 -----LDLL-E--AKPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG------ES  251 (289)
Q Consensus       189 -----~~~~-~--~~~~g~i~~~~~~~---~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~------~~  251 (289)
                           ...+ .  ....+++-.+|...   ..+..+..-...|.|+.++|||+++|++......+.+||+..      .+
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~  314 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  314 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             chHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc
Confidence                 0000 0  00112344566542   123333344467999999999999999999999999999751      11


Q ss_pred             Ccceeeee--ccCCCCCCceeeCCCCCEEEEEe
Q 022967          252 KEQTEIFV--ENLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       252 ~~~~~~~~--~~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      ..-.....  ..+.-.|---++|.+|+.|.+..
T Consensus       315 ~~~~~~~~~e~elglgPLht~fd~~g~aytslf  347 (459)
T d1fwxa2         315 ADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLF  347 (459)
T ss_dssp             C-GGGGEEECCBCCSCEEEEEECTTSEEEEEET
T ss_pred             CCccccEEeecccCcCccccccCCCceEEEEee
Confidence            11111111  12333577788999999999864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.77  E-value=0.00043  Score=59.55  Aligned_cols=110  Identities=9%  Similarity=0.020  Sum_probs=65.6

Q ss_pred             CCCc-EEEEeCC-CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcc--ccccccceecCCC
Q 022967          126 QENE-ILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLH--NWGLDLLEAKPHG  198 (289)
Q Consensus       126 ~~g~-l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~--~~~~~~~~~~~~g  198 (289)
                      +||+ |||++.. ++|.++| .++ ...+.....   ...+.++++.+||+ +||..... +...  .......+.....
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccc
Confidence            5674 8898865 5789999 666 443333211   24688999999995 78865431 1110  0000111111123


Q ss_pred             EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      .+..+|+.+.+......-...|.+++++|||+++|++..+.
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             eEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence            45568887665443222234689999999999999997654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.0035  Score=50.31  Aligned_cols=201  Identities=10%  Similarity=0.034  Sum_probs=97.1

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCCcEEEE-eCCCceEEEe-CCC---eE
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILVC-DADKGLLKVT-EEG---VT  148 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~l~v~-~~~~~i~~~~-~~g---~~  148 (289)
                      ..-.+|++.+++.+. ++..+|.|..|+ .+++....... ..... .+++.+++.+.++ .....+..++ ...   ..
T Consensus        56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  134 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESSSSCSCCC
T ss_pred             CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeecccccccccccc
Confidence            445778999988866 666889999999 45654332222 23344 8999998876554 3333344444 211   11


Q ss_pred             EEEeccCCccc--------cCccceEEcCCCcEEEeeCCCccC---------------ccccccccceecCCCEEEEEeC
Q 022967          149 VLASHVNGSRI--------NLADDLIAATDGSIYFSVASTKFG---------------LHNWGLDLLEAKPHGKLLKYDP  205 (289)
Q Consensus       149 ~~~~~~~~~~~--------~~~~~l~~~~dG~lyv~~~~~~~~---------------~~~~~~~~~~~~~~g~i~~~~~  205 (289)
                      ... ...+...        ....-.....+.............               ........+.+...+.|..+|.
T Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         135 VSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEE-EECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             cce-ecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence            110 0000000        000000111111111111100000               0000011222334567888887


Q ss_pred             CCCeEEEeeCC-CCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCceeeCCCCCEEEEEe
Q 022967          206 SLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAIL  282 (289)
Q Consensus       206 ~~~~~~~~~~~-~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~  282 (289)
                      .+++......+ ......++++|+++.|+.+ ...+.|..|++.....  ...+.. ........++++++|++.++..
T Consensus       214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         214 REGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred             CCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeeccccc--ccccccccccCceEEEEECCCCCEEEEEE
Confidence            76665443333 3345788999999966665 4457888888754321  111111 1112234567777776555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.00039  Score=57.98  Aligned_cols=117  Identities=9%  Similarity=-0.074  Sum_probs=72.6

Q ss_pred             CeEEcCCCc-EEEEeCC-----CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCcccccccc
Q 022967          121 GITTTQENE-ILVCDAD-----KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDL  191 (289)
Q Consensus       121 gl~~d~~g~-l~v~~~~-----~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~  191 (289)
                      .++...+++ .|++...     ..++.+| ..+ .......      .....+++.|||+ ||++....  .      ..
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~------~~~~~~a~spDg~~i~~~~~~~--~------~~   89 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AFLSLAVAGHSGSDFALASTSF--A------RS   89 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CTTCEEEECTTSSCEEEEEEEE--T------TT
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC------CCCCcceECCCCCEEEEEcccC--c------cc
Confidence            444445553 5655321     2478888 555 3222111      1233689999995 88875321  0      01


Q ss_pred             ceecCCCEEEEEeCCCCeEEEeeC--------CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCCC
Q 022967          192 LEAKPHGKLLKYDPSLNETSILLD--------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES  251 (289)
Q Consensus       192 ~~~~~~g~i~~~~~~~~~~~~~~~--------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~  251 (289)
                      ..+...+.|..+|+.+++......        ....|.+++|+|||++||+++...+.+..+|+.+.+
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            112234568999998776543221        234578999999999999998888899999987653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.0011  Score=54.34  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             ccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCE-EEEEeCCC
Q 022967          162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY-LVVCETFK  239 (289)
Q Consensus       162 ~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~-l~v~~~~~  239 (289)
                      ...+++.++|. +|++.....        ..........|..+|..+++..........+.+++++|||+. +|++....
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRD--------EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECC--------TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEEEEeCCCCeEEEEeccCC--------ceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC
Confidence            44688889885 565432100        000111224688899887765443333355789999999984 67887888


Q ss_pred             CeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCC
Q 022967          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (289)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  275 (289)
                      +.|++||....+.  .. .+......|..|.+.++|
T Consensus       323 ~~i~v~D~~tg~~--~~-~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         323 KTLYIHDAESGEE--LR-SVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             TEEEEEETTTCCE--EE-EECCCCSSCCEEECCCCC
T ss_pred             CEEEEEECCCCCE--EE-EEeCcCCCccEEEeCCCC
Confidence            9999999865432  11 233444568888776655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.0052  Score=48.31  Aligned_cols=147  Identities=14%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCc-------------------cCeEEcCCCcEEEE-
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTL-------------------LGITTTQENEILVC-  133 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~-------------------~gl~~d~~g~l~v~-  133 (289)
                      .....+++++++.++ ++..++.|..++ .+++... +........                   ........+.++++ 
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            345567888888776 556788888887 3333221 111000000                   01111223343333 


Q ss_pred             eCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeE
Q 022967          134 DADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (289)
Q Consensus       134 ~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  210 (289)
                      .....+..++ .++  +..+...     ......+++.++|++.++...                 .+.|..+|.++++.
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGH-----DNWVRGVLFHSGGKFILSCAD-----------------DKTLRVWDYKNKRC  281 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECSSSSCEEEEET-----------------TTEEEEECCTTSCC
T ss_pred             cCCCEEEEEECCCCcEEEEEeCC-----CCCEEEEEECCCCCEEEEEEC-----------------CCeEEEEECCCCcE
Confidence            3333455556 455  3333211     124568899999976655322                 46788888776653


Q ss_pred             E-EeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 022967          211 S-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (289)
Q Consensus       211 ~-~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~  246 (289)
                      . .+.......+.++|+++++.|+.+ ...+.|..||
T Consensus       282 ~~~~~~h~~~V~~~~~s~~~~~l~s~-s~Dg~i~iWd  317 (317)
T d1vyhc1         282 MKTLNAHEHFVTSLDFHKTAPYVVTG-SVDQTVKVWE  317 (317)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCEEEE-ETTSEEEEEC
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEeC
Confidence            3 333333445788999999966655 4456777664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.026  Score=46.13  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             ceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeee-cCcCccCeEEcCCCcEEE-EeCCCceEEEe-CCC-eEEEEec
Q 022967           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLASH  153 (289)
Q Consensus        80 ~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~l~v-~~~~~~i~~~~-~~g-~~~~~~~  153 (289)
                      .++++.++|++. ++..+|.|..++ ..++....... ..... .+.+..++...+ +.....+..++ ... .......
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            458888888766 667889899988 44443333222 22334 777877776444 44434456666 434 2221111


Q ss_pred             cCCccccCccceEEcC-CCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeC--------CCCCcceEE
Q 022967          154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------SLFFANGVA  224 (289)
Q Consensus       154 ~~~~~~~~~~~l~~~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--------~~~~p~gl~  224 (289)
                       .    .....+.+.+ ++.+.++...                 .+.|..++.+++.......        .......++
T Consensus       204 -~----~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         204 -E----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             -S----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             -c----cccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence             1    1122334443 6665554321                 3557777766554332211        112346789


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEecC
Q 022967          225 LSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       225 ~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      ++++++.|+.+. ..+.|..|++..
T Consensus       262 ~s~~~~~l~s~~-~d~~i~iwd~~~  285 (388)
T d1erja_         262 FTRDGQSVVSGS-LDRSVKLWNLQN  285 (388)
T ss_dssp             ECTTSSEEEEEE-TTSEEEEEEC--
T ss_pred             ECCCCCEEEEEE-CCCcEEEEeccC
Confidence            999999766654 457899888753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.01  Score=46.56  Aligned_cols=149  Identities=10%  Similarity=0.042  Sum_probs=87.5

Q ss_pred             CcceEEEccCCCEE-EEecCCeEEEEe-cCCceEE-eeeecCcCccCeEEcCCCcEEEEeCC-CceEEEe-CCC-eEEEE
Q 022967           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~l~v~~~~-~~i~~~~-~~g-~~~~~  151 (289)
                      .-.+|++.+++++. ++..+|.|..++ .+++... +........ .+++++++.+.++... ..+...+ ... .....
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRTM   97 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeeccccccccccccccccccccccccccccc
Confidence            34678899988866 556889999998 5565433 322233344 8899888876665433 3344444 222 21111


Q ss_pred             eccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCCCCCcceEEEecCCC
Q 022967          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDED  230 (289)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~p~gl~~~~d~~  230 (289)
                      ..    .......+.+.+++...++...                 .+.+..++.++++... +.........++++++++
T Consensus        98 ~~----~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (317)
T d1vyhc1          98 HG----HDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  156 (317)
T ss_dssp             CC----CSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             cc----ccccceeeeccCCCceEEeecc-----------------CcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence            10    1123456778888876555322                 3566777776555433 333344556788999988


Q ss_pred             EEEEEeCCCCeEEEEEecC
Q 022967          231 YLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~  249 (289)
                      .+..+ ...+.|..++...
T Consensus       157 ~l~~~-~~d~~v~~~~~~~  174 (317)
T d1vyhc1         157 LIASC-SNDQTVRVWVVAT  174 (317)
T ss_dssp             EEEEE-ETTSCEEEEETTT
T ss_pred             EEEEE-eCCCeEEEEeecc
Confidence            65554 4456777777543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.017  Score=46.73  Aligned_cols=156  Identities=6%  Similarity=-0.072  Sum_probs=80.3

Q ss_pred             CcceEEEccCCCEE-EEecCCe-EEEEe-cCCc---eEEeeeecCcCccCeEEcC--CCcEEEEeCCC-ceEEEe-CCC-
Q 022967           78 GPEDVCVDRNGVLY-TATRDGW-IKRLH-KNGT---WENWKLIGGDTLLGITTTQ--ENEILVCDADK-GLLKVT-EEG-  146 (289)
Q Consensus        78 ~p~~l~~d~~g~l~-v~~~~g~-i~~~~-~~g~---~~~~~~~~~~p~~gl~~d~--~g~l~v~~~~~-~i~~~~-~~g-  146 (289)
                      .|.+++++++|+.. ++..+.. |..++ .+..   ...+......+.+.++|.+  +|.++++.... .|..++ ..+ 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            57788999988766 4444433 23333 2222   2222222233444888975  55565543333 344444 221 


Q ss_pred             -eEEE---EeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCCCCCcc
Q 022967          147 -VTVL---ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFAN  221 (289)
Q Consensus       147 -~~~~---~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~~~~p~  221 (289)
                       ...+   .............++++.++|...++....               ....+..++.++++.. .+.......+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG---------------RDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC---------------SSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeecc---------------ccceEEEEeecccccceeeeecccccc
Confidence             1111   110000011235688999999765543220               1223455555555433 3322233457


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEec
Q 022967          222 GVALSKDEDYLVVCETFKFRCLKYWLK  248 (289)
Q Consensus       222 gl~~~~d~~~l~v~~~~~~~i~~~~~~  248 (289)
                      .++|+++++.++++....+.+..|+..
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             cccccccccceEEEeeccccccccccc
Confidence            789999988767766666788888754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.0032  Score=52.64  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=82.5

Q ss_pred             cceEEEccCCCEEEEecCCeEEEEe-cCCceEE-eee-----ecCcCccCeEEcCCCcEEEEeCC-C--c-eEEEe-CCC
Q 022967           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKL-----IGGDTLLGITTTQENEILVCDAD-K--G-LLKVT-EEG  146 (289)
Q Consensus        79 p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~-~~~-----~~~~p~~gl~~d~~g~l~v~~~~-~--~-i~~~~-~~g  146 (289)
                      ..++++.++|.|.++..++.|..|+ .+++... +..     ....++..++|.++|+++++... +  + +..++ ..|
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            5678888898777888999999999 4454321 211     11223338899999987776422 2  2 34456 556


Q ss_pred             --eEEEEeccCC-------ccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC
Q 022967          147 --VTVLASHVNG-------SRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (289)
Q Consensus       147 --~~~~~~~~~~-------~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~  216 (289)
                        +..+......       ..+ ....++++.|||++.++...                 .+.|..+|.++++......+
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----------------D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----------------CCEEEEEECCCCCEEEEECC
Confidence              4333211000       011 23678999999998777542                 47788889888876544333


Q ss_pred             CC-----CcceEEEecCCCE
Q 022967          217 LF-----FANGVALSKDEDY  231 (289)
Q Consensus       217 ~~-----~p~gl~~~~d~~~  231 (289)
                      ..     ....++++++++.
T Consensus       330 H~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCB
T ss_pred             cCCcccCCccEEEECCCCCE
Confidence            21     2245788888874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.049  Score=43.76  Aligned_cols=149  Identities=11%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             cceEEEcc--CCCEE-EEecCCeEEEEec-CCc----eEE----eeeecCcCccCeEEcCCCcEEEE-eCC--CceEEEe
Q 022967           79 PEDVCVDR--NGVLY-TATRDGWIKRLHK-NGT----WEN----WKLIGGDTLLGITTTQENEILVC-DAD--KGLLKVT  143 (289)
Q Consensus        79 p~~l~~d~--~g~l~-v~~~~g~i~~~~~-~g~----~~~----~~~~~~~p~~gl~~d~~g~l~v~-~~~--~~i~~~~  143 (289)
                      -.++++.|  +|.+. .++.+|.|..++. .++    ...    .......+...+++.++|+.+++ ..+  ..+..++
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~  145 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  145 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEe
Confidence            45678876  55555 5668899988872 211    111    01112223337889888875543 322  2345555


Q ss_pred             -CCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC---
Q 022967          144 -EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---  216 (289)
Q Consensus       144 -~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~---  216 (289)
                       ..+  +..+..     .......+++.+++. +.++..                 ..+.+..++....+.......   
T Consensus       146 ~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~-----------------~d~~v~~~d~~~~~~~~~~~~~~~  203 (325)
T d1pgua1         146 WDSGNSLGEVSG-----HSQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTHHK  203 (325)
T ss_dssp             TTTCCEEEECCS-----CSSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSSSC
T ss_pred             ecccccceeeee-----cccccccccccccccceEEEee-----------------cccccccccccccccceecccccC
Confidence             445  333211     112456788998875 344332                 136677777665444332211   


Q ss_pred             -CCCcceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          217 -LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       217 -~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                       ......++|+||+..++++-...+.|..||...
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeecc
Confidence             223467899998655676666678899998754

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.91  E-value=0.019  Score=42.66  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=93.1

Q ss_pred             cccceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEec----CCc----eEEeeeecCcCccCeEEcCCCcEEEEeC
Q 022967           64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK----NGT----WENWKLIGGDTLLGITTTQENEILVCDA  135 (289)
Q Consensus        64 ~~~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~~----~g~----~~~~~~~~~~p~~gl~~d~~g~l~v~~~  135 (289)
                      -+.++.++..+.+..-..|++.|+|+||.-.. +.+++=..    +..    .+.+....-.-..-+.||+.|.||++..
T Consensus        27 ~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~  105 (235)
T d1tl2a_          27 WLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK  105 (235)
T ss_dssp             HHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET
T ss_pred             ccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecC
Confidence            44567788887788888999999999995443 45665541    111    2222221111221588999999999885


Q ss_pred             CCceEEEe-CCC--------eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCC
Q 022967          136 DKGLLKVT-EEG--------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (289)
Q Consensus       136 ~~~i~~~~-~~g--------~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  206 (289)
                       ..+++-. ++.        ...+ .   ...-+...-|-++|+|.||-...                   .++++-.|-
T Consensus       106 -~~LYr~~pPtn~~q~W~g~a~~v-G---~~gw~df~~lFFdP~G~LYaV~~-------------------~~l~k~~pP  161 (235)
T d1tl2a_         106 -DKLYKASPPQSDTDNWIARATEV-G---SGGWSGFKFLFFHPNGYLYAVHG-------------------QQFYKALPP  161 (235)
T ss_dssp             -TEEEEESCCCSTTCCHHHHSEEE-E---CSSGGGEEEEEECTTSCEEEEET-------------------TEEEEECCC
T ss_pred             -cceecCCcCcccchhhhhhhhhh-c---cCCcCceeEEEECCCceEEEEEC-------------------CcEEEcCCC
Confidence             5788886 322        1222 1   11222334678999999998753                   357776654


Q ss_pred             CCe-------EEEee-CCCCCcceEEEecCCCEEEEEeCCCCeEEE
Q 022967          207 LNE-------TSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLK  244 (289)
Q Consensus       207 ~~~-------~~~~~-~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~  244 (289)
                      .+.       -+.+. .+-..+..+.|+|+|. ||.+.-  ..+++
T Consensus       162 ~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~~--g~~Y~  204 (235)
T d1tl2a_         162 VSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQG--GKFYE  204 (235)
T ss_dssp             SSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEET--TEEEE
T ss_pred             CCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEeC--CeEEe
Confidence            331       12233 3445567899999998 666632  44553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.07  Score=41.49  Aligned_cols=184  Identities=13%  Similarity=0.066  Sum_probs=92.4

Q ss_pred             CCcceEEEccCCCEEEEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCC-cEEEEeCCCc-eEEEeCCC-eEEEEe
Q 022967           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKG-LLKVTEEG-VTVLAS  152 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~l~v~~~~~~-i~~~~~~g-~~~~~~  152 (289)
                      ..|..++..+++.+++...++.+..++ .+++......... +  ..++..++ .+.++....+ +..++-.. ......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS-P--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS-C--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc-e--eeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence            357778888788877766677777777 4454433222112 2  23333344 4555544333 44444222 111111


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEee--CCCCCcceEEEecCCC
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDED  230 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~p~gl~~~~d~~  230 (289)
                      .  .........++++|+|...++..                 ..+.|..+|..+++.....  ......+.++|+|++.
T Consensus       158 ~--~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         158 K--TPLRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             S--SCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             e--eccCCceeEEEeccCcccccccc-----------------ccccccceeecccccccccccccccccceeeeccccc
Confidence            1  11112456889999997544432                 2367888888766543221  1122235566765432


Q ss_pred             ---------EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCceeeCCCCCEEEEEeCc
Q 022967          231 ---------YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       231 ---------~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                               .++++....+.|+.|++..... ... ......+...+++..+++.+..+..++
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~~~-~~~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIK-ALNAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTC-CEE-ETTSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCCe-EEE-EeCCCCCCeEEEEECCCCEEEEEECCC
Confidence                     2444545567899998753211 111 111112334556655566655444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.55  E-value=0.15  Score=41.82  Aligned_cols=179  Identities=12%  Similarity=0.165  Sum_probs=90.9

Q ss_pred             cCCCEEEEe-cCCeEEEEecCCceEEeeeecCcCccCeE------EcCCC-cE-EEEeCC---Cc--eEEEe-CCC-eEE
Q 022967           86 RNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGIT------TTQEN-EI-LVCDAD---KG--LLKVT-EEG-VTV  149 (289)
Q Consensus        86 ~~g~l~v~~-~~g~i~~~~~~g~~~~~~~~~~~p~~gl~------~d~~g-~l-~v~~~~---~~--i~~~~-~~g-~~~  149 (289)
                      |+..|.+++ .+++|+.|+.+|+...+.. .++++ .+.      +..+. .+ +++++.   ..  ++.++ ..+ +..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            455666555 5566999998787655432 34443 332      32222 13 334432   23  45555 344 443


Q ss_pred             EEeccC--CccccCccceEE--cC-CCcEEEeeCCCccCccccccccceecCCCEE--EEEeCC-CCeEE--Ee--eCCC
Q 022967          150 LASHVN--GSRINLADDLIA--AT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPS-LNETS--IL--LDSL  217 (289)
Q Consensus       150 ~~~~~~--~~~~~~~~~l~~--~~-dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i--~~~~~~-~~~~~--~~--~~~~  217 (289)
                      +.....  ......+++++.  ++ +|.+|+....                ..|.+  |.+..+ .+.+.  .+  ....
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            322111  011235788887  55 4666654322                12443  444332 23221  11  1223


Q ss_pred             CCcceEEEecCCCEEEEEeCCCCeEEEEEecCCCCcceeee----eccCCCCCCceeeC--CCC-CEEEEEeC
Q 022967          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF----VENLPGGPDNIKLA--PDG-SFWIAILQ  283 (289)
Q Consensus       218 ~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~p~~i~~d--~~G-~lwv~~~~  283 (289)
                      ..+-|++++.+.+.||+++-. .+|++|+.+-.........    ..++.+-|.||++-  .+| .+||++..
T Consensus       180 ~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ  251 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ  251 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             CccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence            456799999999999999875 7899998763322211111    11233457787753  223 25555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.40  E-value=0.031  Score=47.57  Aligned_cols=118  Identities=13%  Similarity=-0.009  Sum_probs=72.9

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCc-cccCccceEEcCCCc-EEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS-RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~-~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      .+.+-+++.++..+ ++.++.++ .+| .+.+.....-. ......++.+.|||+ |.++....         .+.....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~---------~~~r~s~   90 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV---------KQWRHSY   90 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE---------ECSSSCE
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc---------ceeeecc
Confidence            67777777765555 46799999 667 55554422111 122456889999996 44432110         1111122


Q ss_pred             CCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+.++.+|.++++...+...........|+|||+.+....  ++.++.++..+.
T Consensus        91 ~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             CceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence            4678899999887765544444456678999999777753  467888876654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.16  Score=39.65  Aligned_cols=144  Identities=13%  Similarity=0.051  Sum_probs=73.5

Q ss_pred             EEEccCCCE-EEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccC
Q 022967           82 VCVDRNGVL-YTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN  155 (289)
Q Consensus        82 l~~d~~g~l-~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~  155 (289)
                      .....++.. .++..+|.|..++ ..++...... ...... .+.+++ ..|+.+.....+..++ ...  ...+...  
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--  256 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGP--  256 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEEECST--
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee-EEecCC-CEEEEEcCCCEEEEEeccccccccccccc--
Confidence            344445554 4667888898888 4444332222 122233 566643 2344444445566677 444  3222111  


Q ss_pred             CccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE-EeeCC-----CCCcceEEEecCC
Q 022967          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS-----LFFANGVALSKDE  229 (289)
Q Consensus       156 ~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~~~~~-----~~~p~gl~~~~d~  229 (289)
                        ..+...-..+..+++++++..                 ..+.|..+|.++++.. .+...     ....+.++++|++
T Consensus       257 --~~~~~~~~~~~~~~~~~~s~s-----------------~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         257 --NKHQSAVTCLQFNKNFVITSS-----------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             --TSCSSCEEEEEECSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             --ceeeeceeecccCCCeeEEEc-----------------CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence              111222234445566655533                 2477888898777643 22211     1124578899988


Q ss_pred             CEEEEEeCC---CCeEEEEEec
Q 022967          230 DYLVVCETF---KFRCLKYWLK  248 (289)
Q Consensus       230 ~~l~v~~~~---~~~i~~~~~~  248 (289)
                      ..+..+...   ..+|+.+|++
T Consensus       318 ~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         318 LVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEECSSSSSCCEEEEEECC
T ss_pred             CEEEEEeCCCCCeeEEEEEeCC
Confidence            744444322   2368888876

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.055  Score=44.69  Aligned_cols=115  Identities=10%  Similarity=0.058  Sum_probs=65.6

Q ss_pred             CeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCcc-ccCccceEEcCCCcEEEeeCCCccCccccccccceecC
Q 022967          121 GITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (289)
Q Consensus       121 gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~-~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~  196 (289)
                      .+++.++|.|..+..+..|..++ .++  +..+.....-.. ....+.+++.|||++.++...              ...
T Consensus       189 ~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~--------------D~t  254 (393)
T d1sq9a_         189 SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD--------------SNS  254 (393)
T ss_dssp             EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE--------------ETT
T ss_pred             EEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC--------------CCC
Confidence            67888888554444434566677 555  333322111011 124678999999987776421              001


Q ss_pred             CCEEEEEeCCCCeEEEeeC--------------CCCCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          197 HGKLLKYDPSLNETSILLD--------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~--------------~~~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+.|..+|.++++......              ....-..++|+||++.| ++....+.|..||++..
T Consensus       255 ~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l-~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTT
T ss_pred             cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee-EEECCCCEEEEEECCCC
Confidence            1235556776654332211              11224668999999954 55566789999998653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.16  E-value=0.11  Score=43.69  Aligned_cols=108  Identities=10%  Similarity=0.007  Sum_probs=60.2

Q ss_pred             CCc-EEEEeCC-CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCC-cEEEeeCCC-ccCcccccccccee-cCCCE
Q 022967          127 ENE-ILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVAST-KFGLHNWGLDLLEA-KPHGK  199 (289)
Q Consensus       127 ~g~-l~v~~~~-~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~lyv~~~~~-~~~~~~~~~~~~~~-~~~g~  199 (289)
                      ||+ |||.+.. .+|.+++ +.- ...++....   ...+.++...+++ ..||...+. .-.+.+....+-+. ...+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCC---CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            564 7787755 5799999 444 433433211   2345677777765 467654331 11111111111111 12244


Q ss_pred             EEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC
Q 022967          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       200 i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      +..+|.++.++..-..-..++..+++++||+++|++..
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            66789887765432222346788999999999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.93  E-value=0.029  Score=43.65  Aligned_cols=53  Identities=13%  Similarity=0.026  Sum_probs=38.9

Q ss_pred             CEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeC--CC---CeEEEEEecCC
Q 022967          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FK---FRCLKYWLKGE  250 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~--~~---~~i~~~~~~~~  250 (289)
                      +.||.+|.++++.+.+..+.......+|+|||++|.++..  ..   ..|++++..+.
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            5799999998888877666555677899999998876532  11   24777776654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.27  Score=38.56  Aligned_cols=144  Identities=10%  Similarity=-0.070  Sum_probs=75.6

Q ss_pred             CCcceEEEccCCCEE-EEecCCeEEEEe-cCCceEEeeeecCcCccCeEEcCCCcEEEEeCCCceEEEe-CCCeEEEEec
Q 022967           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASH  153 (289)
Q Consensus        77 ~~p~~l~~d~~g~l~-v~~~~g~i~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g~~~~~~~  153 (289)
                      .....+.+++++... ++..++.|..++ .++...........+.+.+++++ ..|+.+..+..|..+| .++...+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  280 (355)
T d1nexb2         202 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYH  280 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccceeeecccccceEEeeecccccccccccccccccccccccc-ceeeeeecccccccccccccceecccc
Confidence            445567777766655 667888898888 55554433332233333777753 2344444434466667 4443222211


Q ss_pred             cCCccccCccc-eEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEE-eeCC-CCCcceEEEecCCC
Q 022967          154 VNGSRINLADD-LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDS-LFFANGVALSKDED  230 (289)
Q Consensus       154 ~~~~~~~~~~~-l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~-~~~p~gl~~~~d~~  230 (289)
                      .     ..... ..+.+++.+.++..                  .+.|..+|.++++... ...+ ......++++++  
T Consensus       281 ~-----~~~~~~~~~~~~~~~l~~g~------------------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--  335 (355)
T d1nexb2         281 H-----TNLSAITTFYVSDNILVSGS------------------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--  335 (355)
T ss_dssp             C-----TTCCCCCEEEECSSEEEEEE------------------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--
T ss_pred             c-----CCceEEEEEcCCCCEEEEEe------------------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--
Confidence            1     11222 34556777766632                  3678888887766421 1111 122345778764  


Q ss_pred             EEEEEeCCCCe--EEEEE
Q 022967          231 YLVVCETFKFR--CLKYW  246 (289)
Q Consensus       231 ~l~v~~~~~~~--i~~~~  246 (289)
                      .++++-...++  |+.+|
T Consensus       336 ~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         336 TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEEEEESSSCEEEEEEE
T ss_pred             eEEEEEECCCcEEEEEEe
Confidence            35554443444  45554

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.51  E-value=0.53  Score=39.04  Aligned_cols=150  Identities=11%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             cCCcceEEEcc--CCCEEEEecCCeEEEEecCCc-eEEeeeec-------CcCccCeEEcCC--CcEEEEeC------CC
Q 022967           76 LNGPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG-------GDTLLGITTTQE--NEILVCDA------DK  137 (289)
Q Consensus        76 ~~~p~~l~~d~--~g~l~v~~~~g~i~~~~~~g~-~~~~~~~~-------~~p~~gl~~d~~--g~l~v~~~------~~  137 (289)
                      -..-.+|+++|  ...+|++...|.|++-+..|+ ++.+....       .... .|++|+.  ..||++..      ..
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~   89 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWA   89 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCc
Confidence            34567889988  346888887778988764343 44332111       1123 6888875  36888752      13


Q ss_pred             ceEEEeCCC--eEEEEeccCC----ccccCccceEEcCC--CcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCe
Q 022967          138 GLLKVTEEG--VTVLASHVNG----SRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (289)
Q Consensus       138 ~i~~~~~~g--~~~~~~~~~~----~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  209 (289)
                      ++++-...|  .+.+......    ........|+++|.  ..||++...                  ++|++-.-.+..
T Consensus        90 gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~------------------~gl~~S~D~G~t  151 (427)
T d2ebsa1          90 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT------------------EGIWKSSDRAKT  151 (427)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSS------------------SCEEEESSTTSS
T ss_pred             cEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccc------------------cceeeecCCCce
Confidence            466665555  4444332111    11123446899984  368887532                  457765433333


Q ss_pred             EEEeeC---CCC---CcceEEEec-CCCEEEEEeCCCCeEEE
Q 022967          210 TSILLD---SLF---FANGVALSK-DEDYLVVCETFKFRCLK  244 (289)
Q Consensus       210 ~~~~~~---~~~---~p~gl~~~~-d~~~l~v~~~~~~~i~~  244 (289)
                      .+.+..   ...   ....+.++| +.+.+|++......|++
T Consensus       152 W~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         152 WTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             CEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             eeecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            443321   111   123456766 44567877666566764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.46  E-value=0.58  Score=40.87  Aligned_cols=108  Identities=15%  Similarity=0.205  Sum_probs=62.7

Q ss_pred             CCCEEEEec-CCeEEEEe-cC-CceEEeeee----c-------C-cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEE
Q 022967           87 NGVLYTATR-DGWIKRLH-KN-GTWENWKLI----G-------G-DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTV  149 (289)
Q Consensus        87 ~g~l~v~~~-~g~i~~~~-~~-g~~~~~~~~----~-------~-~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~  149 (289)
                      +|.||+.+. ++.|+.++ .+ |+...-...    .       . ... |+++. +++||+.+....++.+| ++| +..
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC-cceee-CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            689999875 68899999 34 765422110    0       1 123 67775 67899998777899999 777 432


Q ss_pred             EEec---cCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          150 LASH---VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       150 ~~~~---~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      -...   ..+.....+ .+.  -++.+|+.....            +....|.|..+|..+|+..
T Consensus       140 ~~~~~~~~~~~~~t~~-p~v--~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQA-PFV--AKDTVLMGCSGA------------ELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEECCCGGGTCBCCSC-CEE--ETTEEEEECBCG------------GGTCCCEEEEEETTTCCEE
T ss_pred             cccccccccccceeec-CeE--eCCeEEEeeccc------------cccccCcEEEEECCCCcEE
Confidence            2111   111111111 112  246787765432            1123467888888877754

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.29  E-value=0.078  Score=39.35  Aligned_cols=105  Identities=12%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             cceeEeccCCcCCcceEEEccCCCEEEEecCCeEEEEe-cCCc-------eEEeeeec-CcCccCeEEcCCCcEEEEeCC
Q 022967           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGT-------WENWKLIG-GDTLLGITTTQENEILVCDAD  136 (289)
Q Consensus        66 ~~~~~~~~~~~~~p~~l~~d~~g~l~v~~~~g~i~~~~-~~g~-------~~~~~~~~-~~p~~gl~~d~~g~l~v~~~~  136 (289)
                      ....+|..+.-..=..+.+||+|-||+.+ .+.+++-. ++.+       ...+.... +.-- -|.||++|.||.... 
T Consensus        76 ~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~LYaV~~-  152 (235)
T d1tl2a_          76 GRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAVHG-  152 (235)
T ss_dssp             HHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEEET-
T ss_pred             HhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceEEEEEC-
Confidence            44567777665566678999999999555 47899887 3322       22222211 1223 688999999999865 


Q ss_pred             CceEEEe-CCC-----e---EEEEeccCCccccCccceEEcCCCcEEEee
Q 022967          137 KGLLKVT-EEG-----V---TVLASHVNGSRINLADDLIAATDGSIYFSV  177 (289)
Q Consensus       137 ~~i~~~~-~~g-----~---~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~  177 (289)
                      .++++-. +.+     +   +.+-    ...-..+..|.+.|||+||...
T Consensus       153 ~~l~k~~pP~~~~d~WL~~st~ig----r~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         153 QQFYKALPPVSNQDNWLARATKIG----QGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEE----SSSGGGEEEEEECTTSCEEEEE
T ss_pred             CcEEEcCCCCCCCchhhhhhhhhc----cCcccCceEEEECCCCcEEEEe
Confidence            4587776 322     1   2221    1122345688999999999774

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.48  Score=36.94  Aligned_cols=61  Identities=10%  Similarity=0.071  Sum_probs=37.3

Q ss_pred             eEEEccCCCEEEEecCCeEEEEe-cCCceEEeee-ecCcCccCeEEcCCCcEEEEeCCCceEEEe
Q 022967           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT  143 (289)
Q Consensus        81 ~l~~d~~g~l~v~~~~g~i~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~l~v~~~~~~i~~~~  143 (289)
                      ++.+| ++.|+++..+|.|..|+ .+++...... ..+... .+++.+++.|+.+..+..+..++
T Consensus        18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2          18 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEETTCCEEEEE
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEeccccccccc
Confidence            44554 23455777899999999 5665433322 233344 89998776665555545566666

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.21  E-value=0.34  Score=42.24  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=62.5

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeee-----------cCcCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEEe
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI-----------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~-----------~~~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~  152 (289)
                      +|.||+.+.+++|+.+| .+|+...-...           +.....+++.. ++++|+.+....++.+| .+| ......
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            68999999999999999 67865422110           01111145554 45789988777899999 677 332221


Q ss_pred             ccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ............--+--++.+++......            ....|.|..+|..+|+..
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             ccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEE
Confidence            11111111111111113566777543321            123467888888887754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.55  Score=35.99  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             cCccCeEEcCCCcEEEEeCCCceEEEe-CCC--eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccc
Q 022967          117 DTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLL  192 (289)
Q Consensus       117 ~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~  192 (289)
                      .+. .+++.+++.++++....++..++ .++  ...+..        .....++.+++. +.++...             
T Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~-------------  139 (287)
T d1pgua2          82 QPK-VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--------NSPGSAVSLSQNYVAVGLEE-------------  139 (287)
T ss_dssp             CEE-EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--------SSCEEEEEECSSEEEEEETT-------------
T ss_pred             cee-eeeeccCCceEEEeecccceeeeccceeeeeeccc--------cceeeeeeccCcceeeeccc-------------
Confidence            344 66777777777766666677777 445  332211        112345556664 4444321             


Q ss_pred             eecCCCEEEEEeCCCCeEEEe-eCCC-CCcceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          193 EAKPHGKLLKYDPSLNETSIL-LDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       193 ~~~~~g~i~~~~~~~~~~~~~-~~~~-~~p~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                          .+.+..++..+.+.... .... .....++|+|++++|+++.. .+.|..||....
T Consensus       140 ----~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~  194 (287)
T d1pgua2         140 ----GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQSR  194 (287)
T ss_dssp             ----TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTT
T ss_pred             ----cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc-cccccceeeccc
Confidence                12355555442222221 1222 23567899999998777754 578999987643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.88  E-value=0.12  Score=39.75  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          137 KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       137 ~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      ..||.++ ++| .+.+... .    ......++.|||+ |+++....            .......|+.++.++++.+.+
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~-~----~~~~~p~~SPDG~~iaf~~~~~------------~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSN-L----GVINNARFFPDGRKIAIRVMRG------------SSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             TEEEEEETTTCCEEEEECS-S----SEEEEEEECTTSSEEEEEEEES------------TTCCEEEEEEEETTTTEEEEC
T ss_pred             CcEEEEECCCCCEEEEecC-C----CcccCEEECCCCCEEEEEEeeC------------CCCCceEEEEEEecCCceEEe
Confidence            4577777 555 6665432 1    1234668999995 65543110            001124689999988887765


Q ss_pred             eCC-------CCCcceEEEecCCCEEEEEeC
Q 022967          214 LDS-------LFFANGVALSKDEDYLVVCET  237 (289)
Q Consensus       214 ~~~-------~~~p~gl~~~~d~~~l~v~~~  237 (289)
                      ...       .......+++||++.++++..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            322       123356789999998888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.61  Score=39.50  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             eEEcCCCcEEEEe--CCC---ceEEEe-CCC-eEEEEeccCCcccc-CccceEEcCCCc-EEEeeCCCccCccccccccc
Q 022967          122 ITTTQENEILVCD--ADK---GLLKVT-EEG-VTVLASHVNGSRIN-LADDLIAATDGS-IYFSVASTKFGLHNWGLDLL  192 (289)
Q Consensus       122 l~~d~~g~l~v~~--~~~---~i~~~~-~~g-~~~~~~~~~~~~~~-~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~  192 (289)
                      +.+.+++++++..  ..+   .++.+| .+| .+.+.......=.. ......+.+||. +++....             
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s-------------  326 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-------------  326 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-------------
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee-------------
Confidence            4566777776653  222   366677 667 54443322211111 123457888884 3332111             


Q ss_pred             eecCCCEEEEEeC-------CCCeEEEeeCCCCCc-ceEEEecCCCEEEEEeCC----CCeEEEEEecCCCCcceeeeec
Q 022967          193 EAKPHGKLLKYDP-------SLNETSILLDSLFFA-NGVALSKDEDYLVVCETF----KFRCLKYWLKGESKEQTEIFVE  260 (289)
Q Consensus       193 ~~~~~g~i~~~~~-------~~~~~~~~~~~~~~p-~gl~~~~d~~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~  260 (289)
                      +..+.+.+++++.       .++....+-.+...- .-++++.+++.+|++.+.    .+-|++++++|.....+-....
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~  406 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL  406 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeecccc
Confidence            1112345666642       222222222222221 234789999999987653    3458999887653322111000


Q ss_pred             cCCCCCCceeeCCCCCEEEEEeCc
Q 022967          261 NLPGGPDNIKLAPDGSFWIAILQV  284 (289)
Q Consensus       261 ~~~~~p~~i~~d~~G~lwv~~~~g  284 (289)
                      ...+.-..+.++.+|..+|-++++
T Consensus       407 ~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         407 VENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             SSSCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCCCEEEEEECCCCCEEEEEeec
Confidence            001123457788999888866554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.5  Score=35.99  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=43.0

Q ss_pred             ceEEcCCCc-EEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCC
Q 022967          164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (289)
Q Consensus       164 ~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~  239 (289)
                      .-++.|||+ |.|....               .....++.++.+++..+.+...........++||++.+.......
T Consensus        43 sP~wSPDGk~IAf~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFE---------------SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             EEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             eeEECCCCCEEEEEEee---------------ccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC
Confidence            458999995 6555332               123468888888777777766666677788999999887765543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.42  E-value=0.57  Score=40.86  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeee-----------cC-cCccCeEEcCCCcEEEEeCCCceEEEe-CCC-eEEEE
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI-----------GG-DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~-----------~~-~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~  151 (289)
                      +|.||+++.+++|+.+| .+|+..-....           +. ... +++.. ++++|+......++.+| .+| ...-.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccc-cceEE-CCcEEEEecccceeeeccccccceecc
Confidence            68999999999999999 57865422110           01 123 56664 56899988777899999 677 43222


Q ss_pred             eccCCccc-cCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          152 SHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       152 ~~~~~~~~-~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      ....+... ....+--+--++.+++.....            +....|.|..+|.++|+..
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEecCCccce
Confidence            21111110 111111122366777765331            1123467888888888754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.98  E-value=0.68  Score=37.74  Aligned_cols=88  Identities=13%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             EEEEEeCCCCeEEEee-------CCCCCcceEEE--ecCCCEEE-EEeCCCCeEEEEEec--CC-CCcceeeeeccCCCC
Q 022967          199 KLLKYDPSLNETSILL-------DSLFFANGVAL--SKDEDYLV-VCETFKFRCLKYWLK--GE-SKEQTEIFVENLPGG  265 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~-------~~~~~p~gl~~--~~d~~~l~-v~~~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~~  265 (289)
                      .+|.+++..+....+.       ..+..+.|+|+  +++.+.+| +......++.+|.+.  +. .+....+..-.++..
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            4677777655554432       23445789998  55544343 333345678777764  22 122222211144567


Q ss_pred             CCceeeCCC-CCEEEEEeCccc
Q 022967          266 PDNIKLAPD-GSFWIAILQVFI  286 (289)
Q Consensus       266 p~~i~~d~~-G~lwv~~~~g~i  286 (289)
                      +.|..+|++ +.|||+--..|+
T Consensus       182 ~EGCVvDde~~~LyisEE~~Gi  203 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEEDEAI  203 (353)
T ss_dssp             EEEEEEETTTTEEEEEETTTEE
T ss_pred             cceEEEeCCCCcEEEecCccce
Confidence            888888866 689999876665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.32  E-value=0.11  Score=43.87  Aligned_cols=88  Identities=13%  Similarity=0.206  Sum_probs=50.8

Q ss_pred             CEEEEEeCCCCeEEEeeCCC------CCcceEEEecCCCEEEEEeC--------CCCeEEEEEecCCCCcceeeeec---
Q 022967          198 GKLLKYDPSLNETSILLDSL------FFANGVALSKDEDYLVVCET--------FKFRCLKYWLKGESKEQTEIFVE---  260 (289)
Q Consensus       198 g~i~~~~~~~~~~~~~~~~~------~~p~gl~~~~d~~~l~v~~~--------~~~~i~~~~~~~~~~~~~~~~~~---  260 (289)
                      +.++.+|..+++.+.+.+..      .....+.|+||+++|.++..        ....++.||+.+...........   
T Consensus        36 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~  115 (470)
T d2bgra1          36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ  115 (470)
T ss_dssp             SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE
T ss_pred             CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccc
Confidence            56899999988877655432      23467899999998877632        12456788887653221110000   


Q ss_pred             cCCCCCCc--eeeCCCCCEEEEEeCcc
Q 022967          261 NLPGGPDN--IKLAPDGSFWIAILQVF  285 (289)
Q Consensus       261 ~~~~~p~~--i~~d~~G~lwv~~~~g~  285 (289)
                      ...-.|+|  |+.-.++++|+-...++
T Consensus       116 ~~~~SPDG~~ia~~~~~~l~~~~~~~g  142 (470)
T d2bgra1         116 WVTWSPVGHKLAYVWNNDIYVKIEPNL  142 (470)
T ss_dssp             EEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ccccccCcceeeEeecccceEEECCCC
Confidence            00013555  55556666777654443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.13  E-value=1.3  Score=33.79  Aligned_cols=70  Identities=13%  Similarity=-0.007  Sum_probs=40.2

Q ss_pred             CCcCCcceEEEccCCCEE-EEecCCeEEEEec-CC-ceEEeee--ecCcCccCeEEcCCC-cEEE-EeCCCceEEEe
Q 022967           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-TWENWKL--IGGDTLLGITTTQEN-EILV-CDADKGLLKVT  143 (289)
Q Consensus        74 ~~~~~p~~l~~d~~g~l~-v~~~~g~i~~~~~-~g-~~~~~~~--~~~~p~~gl~~d~~g-~l~v-~~~~~~i~~~~  143 (289)
                      +.-..-.+|++.|+|++. ++..+|.|..|+. .+ ....+..  ....+.+.++|.+++ .+.+ +.....+..++
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            333445789999988765 6678999998882 22 2222221  123333378887654 4444 34434466666

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.78  E-value=3.6  Score=35.55  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             CCCEEEEecCCeEEEEe-cCCceEEeeee---------cC-cCccCeEEcCCCcEEEEeCCCceEEEe-CCC
Q 022967           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI---------GG-DTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (289)
Q Consensus        87 ~g~l~v~~~~g~i~~~~-~~g~~~~~~~~---------~~-~p~~gl~~d~~g~l~v~~~~~~i~~~~-~~g  146 (289)
                      +|.||+.+.+++|+.+| .+|+..-....         +. ... |++.. ++++|+.+....++.+| ++|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            68999999999999999 57875422110         01 123 66664 56899988777899999 667

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.39  Score=40.78  Aligned_cols=114  Identities=11%  Similarity=-0.027  Sum_probs=63.4

Q ss_pred             EcCCCcEEEEeCCCceEEEe-CCC-eEEEEeccCCccccCccceEEcCCCc-EEEeeCCCccCccccccccceecCCCEE
Q 022967          124 TTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (289)
Q Consensus       124 ~d~~g~l~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-lyv~~~~~~~~~~~~~~~~~~~~~~g~i  200 (289)
                      +.+++.++..+....++.++ .++ .+.+...... ....+....+.|||+ |++.....         .+..+...+.+
T Consensus        24 W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SpD~~~vl~~~~~~---------~~~r~s~~~~~   93 (465)
T d1xfda1          24 WISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEISPDREYALFSYNVE---------PIYQHSYTGYY   93 (465)
T ss_dssp             BSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEECTTSSEEEEEESCC---------CCSSSCCCSEE
T ss_pred             EeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccc-cccccceeEECCCCCeEEEEEccc---------ceeEeeccccE
Confidence            43455554444445677777 556 5555443221 112345678999995 55543221         11122235788


Q ss_pred             EEEeCCCCeEEEeeCCCCCc---ceEEEecCCCEEEEEeCCCCeEEEEEecC
Q 022967          201 LKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (289)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~p---~gl~~~~d~~~l~v~~~~~~~i~~~~~~~  249 (289)
                      +.+|..+++...+.......   .-..|+|||+.+.++.  .+.|+..+..+
T Consensus        94 ~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~  143 (465)
T d1xfda1          94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVG  143 (465)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSS
T ss_pred             EEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCC
Confidence            99998888776653222111   2357899998776553  35677666543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.26  E-value=2.3  Score=32.37  Aligned_cols=58  Identities=7%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             ccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEe
Q 022967          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (289)
Q Consensus       162 ~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~  236 (289)
                      .++++++|+|.++++.+.                 .|.|..+|.++++............-++++++++.|.++.
T Consensus       254 v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         254 VNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             EEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             ceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            467899999987666432                 4778889988766433223333344578999999777763

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=90.37  E-value=3.1  Score=34.02  Aligned_cols=116  Identities=9%  Similarity=0.059  Sum_probs=65.3

Q ss_pred             cCcCccCeEEcCCC--cEEEEeCCCceEEEeCCC--eEEEEeccC--CccccCccceEEcCC--CcEEEeeCCCccCccc
Q 022967          115 GGDTLLGITTTQEN--EILVCDADKGLLKVTEEG--VTVLASHVN--GSRINLADDLIAATD--GSIYFSVASTKFGLHN  186 (289)
Q Consensus       115 ~~~p~~gl~~d~~g--~l~v~~~~~~i~~~~~~g--~~~~~~~~~--~~~~~~~~~l~~~~d--G~lyv~~~~~~~~~~~  186 (289)
                      .++.. +|++++..  .+|++....+|++-+..|  .+.+.....  ........+|+++|.  ..||++.....     
T Consensus        11 gg~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~-----   84 (427)
T d2ebsa1          11 GGYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV-----   84 (427)
T ss_dssp             CSCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT-----
T ss_pred             CCcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecccc-----
Confidence            34556 89998654  588877657899887555  544422111  112234568999985  47888764310     


Q ss_pred             cccccceecCCCEEEEEeCCCCeEEEeeCCC---------CCcceEEEecC-CCEEEEEeCCCCeEEE
Q 022967          187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSL---------FFANGVALSKD-EDYLVVCETFKFRCLK  244 (289)
Q Consensus       187 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---------~~p~gl~~~~d-~~~l~v~~~~~~~i~~  244 (289)
                             ....++|++-.-.+...+.+....         .....++++|. .+.+|++. ..+.|++
T Consensus        85 -------~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~  144 (427)
T d2ebsa1          85 -------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK  144 (427)
T ss_dssp             -------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEE
T ss_pred             -------CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceee
Confidence                   112245766543333445443221         12245888884 45677763 3456765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=3  Score=31.19  Aligned_cols=50  Identities=12%  Similarity=-0.006  Sum_probs=27.7

Q ss_pred             EEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCCCC--eEEEEEec
Q 022967          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF--RCLKYWLK  248 (289)
Q Consensus       199 ~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~~~--~i~~~~~~  248 (289)
                      .|+.++.+++....+...........++||++.++.......  .++.++..
T Consensus       152 ~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~  203 (269)
T d2hqsa1         152 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  203 (269)
T ss_dssp             EEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             eEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecc
Confidence            466666655544443333333344578999998777655433  44444433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=3.5  Score=31.31  Aligned_cols=53  Identities=9%  Similarity=0.033  Sum_probs=30.1

Q ss_pred             CCEEEEEeCCCCeEEEeeCCC-CCc-ceEEEecCCCEEEEEeCCCCeEEEEEecCC
Q 022967          197 HGKLLKYDPSLNETSILLDSL-FFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (289)
Q Consensus       197 ~g~i~~~~~~~~~~~~~~~~~-~~p-~gl~~~~d~~~l~v~~~~~~~i~~~~~~~~  250 (289)
                      .+.|..+|....+........ ... .-.++..+++.++.+ ...+.|..||+...
T Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKLWDLKTG  290 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-ETTSEEEEEETTTC
T ss_pred             CCEEEEEecccccccccccccceeeeceeecccCCCeeEEE-cCCCEEEEEECCCC
Confidence            367888887655544333322 111 223455566645444 55688999998643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.88  E-value=7.7  Score=33.52  Aligned_cols=111  Identities=16%  Similarity=0.089  Sum_probs=60.1

Q ss_pred             CCCEEEEec-CCeEEEEe-c-CCceEEeeee-----------cCc-CccCeEEcCC-----CcEEEEeCCCceEEEe-CC
Q 022967           87 NGVLYTATR-DGWIKRLH-K-NGTWENWKLI-----------GGD-TLLGITTTQE-----NEILVCDADKGLLKVT-EE  145 (289)
Q Consensus        87 ~g~l~v~~~-~g~i~~~~-~-~g~~~~~~~~-----------~~~-p~~gl~~d~~-----g~l~v~~~~~~i~~~~-~~  145 (289)
                      +|.||+.+. .+.++.++ . +|+...-...           +.. .. |+++-.+     ..+|+++...+|+.+| .+
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R-Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc-eeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            689998664 57899888 3 5764422110           111 13 6766422     1488887767899999 77


Q ss_pred             C-eEEEEeccCCccccCcc-ceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEE
Q 022967          146 G-VTVLASHVNGSRINLAD-DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (289)
Q Consensus       146 g-~~~~~~~~~~~~~~~~~-~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  211 (289)
                      | ...-............. .-.+ -++.+|+.....            +....|.|..+|..+|+..
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~------------e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGA------------ELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCG------------GGTCCCEEEEEETTTCCEE
T ss_pred             CceeccccccccccccccccCCcE-ECCeEEEeeccc------------cccccCceEEEECCCCcEE
Confidence            8 33222111100000111 1112 256788875442            1223578888888888754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.81  E-value=6.1  Score=31.25  Aligned_cols=73  Identities=14%  Similarity=0.009  Sum_probs=47.4

Q ss_pred             CccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCC--CCCcceEEEecCCCEEEEEeC-
Q 022967          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCET-  237 (289)
Q Consensus       161 ~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~--~~~p~gl~~~~d~~~l~v~~~-  237 (289)
                      ...+.++.+||+||+.-..                ....+.+||+.++........  .+.-.+.+...|++ +|+.-. 
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~----------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~  139 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGN----------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGS  139 (387)
T ss_dssp             SSCEEEECTTSCEEEECSS----------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCC
T ss_pred             ceeEEEEecCCcEEEeecC----------------CCcceeEecCccCcccccccccccccccceeeecCCc-eeeeccc
Confidence            4557788999999997532                124688899998887765332  22334567777888 555422 


Q ss_pred             C-----CCeEEEEEecCC
Q 022967          238 F-----KFRCLKYWLKGE  250 (289)
Q Consensus       238 ~-----~~~i~~~~~~~~  250 (289)
                      .     .+.+.+||+...
T Consensus       140 ~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CCSSSCCCCEEEEETTTT
T ss_pred             cccccccceeeeecCCCC
Confidence            1     245888887654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.30  E-value=7.5  Score=31.79  Aligned_cols=104  Identities=10%  Similarity=-0.026  Sum_probs=55.0

Q ss_pred             cceEEcCCCcE-EEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEeeCCCCCcceEEEecCCCEEEEEeCC---
Q 022967          163 DDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF---  238 (289)
Q Consensus       163 ~~l~~~~dG~l-yv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~p~gl~~~~d~~~l~v~~~~---  238 (289)
                      .++.++|||+. .++...             .+.....|+.+|.++|+.....-......+++|++|++.+|.+...   
T Consensus       128 ~~~~~Spd~~~la~s~d~-------------~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~  194 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQD  194 (430)
T ss_dssp             EEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred             cceEecCCCCEEEEEecc-------------ccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEecccc
Confidence            46788899863 333211             1222346888899988764321111123678999999988876432   


Q ss_pred             ------------CCeEEEEEecCCCCcceeeeeccC-CCCCCceeeCCCCCEEE
Q 022967          239 ------------KFRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWI  279 (289)
Q Consensus       239 ------------~~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv  279 (289)
                                  .++|++..+.+........+.... +.+.-++.+..+|.+.+
T Consensus       195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~  248 (430)
T d1qfma1         195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (430)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             CcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence                        236777766543222333332111 11222344566665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.16  E-value=6.7  Score=31.03  Aligned_cols=118  Identities=13%  Similarity=0.080  Sum_probs=67.2

Q ss_pred             eEEEc-cCCCEEE-EecC-----C------eEEEEe-cCCceEEeeee-c---CcCccCeEEcCCCcEEEEeC--CCceE
Q 022967           81 DVCVD-RNGVLYT-ATRD-----G------WIKRLH-KNGTWENWKLI-G---GDTLLGITTTQENEILVCDA--DKGLL  140 (289)
Q Consensus        81 ~l~~d-~~g~l~v-~~~~-----g------~i~~~~-~~g~~~~~~~~-~---~~p~~gl~~d~~g~l~v~~~--~~~i~  140 (289)
                      ..++. .+|+||+ +-..     +      .+.++| .++++...... .   .... +.++..+|.+|+...  .+.+.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccccee-EEEEecCCcEEEeecCCCccee
Confidence            34444 4889984 3311     1      255677 45655433211 1   1234 677888999999752  24688


Q ss_pred             EEe-CCC-eEEEEeccCCccccCccceEEcCCCcEEEeeCCCccCccccccccceecCCCEEEEEeCCCCeEEEe
Q 022967          141 KVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (289)
Q Consensus       141 ~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~lyv~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  213 (289)
                      ++| .++ .+.... ...  .+.-...++.+||++|+.-+...           .......+.+||+.+++.+.+
T Consensus       102 ~yd~~~~~w~~~~~-~~~--~r~~~~~~~~~dG~v~v~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         102 LYDSSSDSWIPGPD-MQV--ARGYQSSATMSDGRVFTIGGSWS-----------GGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             EEEGGGTEEEECCC-CSS--CCSSCEEEECTTSCEEEECCCCC-----------SSSCCCCEEEEETTTTEEEEE
T ss_pred             EecCccCccccccc-ccc--cccccceeeecCCceeeeccccc-----------cccccceeeeecCCCCceeec
Confidence            888 555 443322 111  12334677888999998754311           111234688999998887765

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.22  E-value=12  Score=29.73  Aligned_cols=94  Identities=14%  Similarity=0.212  Sum_probs=45.5

Q ss_pred             ceEEEccCCC--EEEEe---cCCeEEEEecCCc-eEEeeee-cCcCccCeEEcC-CC-cEEEEeCCCceEEEeCCC--eE
Q 022967           80 EDVCVDRNGV--LYTAT---RDGWIKRLHKNGT-WENWKLI-GGDTLLGITTTQ-EN-EILVCDADKGLLKVTEEG--VT  148 (289)
Q Consensus        80 ~~l~~d~~g~--l~v~~---~~g~i~~~~~~g~-~~~~~~~-~~~p~~gl~~d~-~g-~l~v~~~~~~i~~~~~~g--~~  148 (289)
                      ..|++++++.  +|...   ..+.|++=...|+ +...... ..... .++.|+ +. .+|.+. ..++++-.+.|  .+
T Consensus       117 g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~~~~-~i~~d~~~~~~~Ya~~-~g~ly~StDgG~TW~  194 (356)
T d2ebsa2         117 STIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKAQTA-NVLSDKVQDGTFYATD-GGKFFVSTDGGKSYA  194 (356)
T ss_dssp             CEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCSCCS-CEEECSSSTTCEEEEE-TTEEEEESSTTSEEE
T ss_pred             ceEEEecCCCccEEEecccCCCcceEEEcCCCcceEEcCCCCCCCcc-EEEEeCcCCceEEecc-cceEEEeCCCccccc
Confidence            3477777544  34322   2234555433342 3221111 12223 577774 33 366555 46787766555  44


Q ss_pred             EEEeccCCccccCccceEEcC--CCcEEEeeC
Q 022967          149 VLASHVNGSRINLADDLIAAT--DGSIYFSVA  178 (289)
Q Consensus       149 ~~~~~~~~~~~~~~~~l~~~~--dG~lyv~~~  178 (289)
                      ....   +.+......+++.|  .|.||++..
T Consensus       195 ~~~~---~~~~~~~~~~~v~p~~~g~v~v~~~  223 (356)
T d2ebsa2         195 AKGA---GLVTGTSLMPAVNPWVAGDVWVPVP  223 (356)
T ss_dssp             ECCB---TCCCCCCCCCEECTTSTTCEEEEET
T ss_pred             cccc---CCccccceeEEEEeccCCceeeccc
Confidence            3222   11222334567776  467998754