Citrus Sinensis ID: 022992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MGDQIARAEEFEKKAEKKLNgwglfgskyedAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHcykktssneAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADmfqneevttsanQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALEryqdmdptfsgtreYRLLSDIAASMDEEDIAKFTDVVKefdsmtpldpwktTLLLRVKEKLKAKeleeddlt
Flexible Loop (DISEMBL)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALEryqdmdptfsgtREYRLLSDIAASMDEEDIAKFTDVVKEfdsmtpldpwkttlllRVKEklkakeleeddlt
Low Complexity Region (SEG)
MGDQIARaeefekkaekkLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTlllrvkeklkakeleeddlT
Disordered region (IsUnstruct)
******************LNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDA************ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK**************
Disordered Region (DISOPRED)
****IARAEEFEKKAEKKLNG*GLF*SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA******DL*
Disordered Region (DISEMBL)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA*********
Disordered Region (DISPRO)
***QIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSxxxxxxxxxxxxxxxxxxxxxIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
P93798	289	Alpha-soluble NSF attachm	yes	no	1.0	1.0	0.768	1e-125
Q9SPE6	289	Alpha-soluble NSF attachm	yes	no	1.0	1.0	0.782	1e-123
Q9M5P8	288	Alpha-soluble NSF attachm	N/A	no	0.996	1.0	0.740	1e-119
Q54NP6	291	Alpha-soluble NSF attachm	yes	no	0.958	0.951	0.468	9e-69
Q9LXZ5	381	Alpha-soluble NSF attachm	no	no	0.747	0.566	0.553	4e-68
Q23983	292	Soluble NSF attachment pr	yes	no	0.951	0.941	0.419	2e-61
P28663	298	Beta-soluble NSF attachme	yes	no	0.916	0.889	0.420	3e-60
Q9H115	298	Beta-soluble NSF attachme	yes	no	0.916	0.889	0.420	3e-60
P81126	298	Beta-soluble NSF attachme	no	no	0.916	0.889	0.420	5e-60
Q9DB05	295	Alpha-soluble NSF attachm	no	no	0.896	0.877	0.414	6e-60

>sp|P93798|SNAA_VITVI Alpha-soluble NSF attachment protein OS=Vitis vinifera PE=2 SV=1

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/289 (76%), Positives = 252/289 (87%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M D I R EEFEKKAEKK++GWGLFGSKYEDAAD +DKAAN FKLAKSWD+AG+TYVKL+
Sbjct: 1   MADNIQRGEEFEKKAEKKISGWGLFGSKYEDAADFYDKAANCFKLAKSWDRAGSTYVKLS 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
                 +SKHEAAQAY DA HCYKKTS+ EAISCLEQA  +F D GR +MA +YYKEIAE
Sbjct: 61  TVIQSSDSKHEAAQAYADAGHCYKKTSAKEAISCLEQAAYLFLDNGRFNMAGKYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E N EQ I++FEKAAD++Q+EE TT+ANQC  KVAQ+AA+LEQY K+I+IYE+I R
Sbjct: 121 LYELEQNFEQAIIYFEKAADIYQSEEATTAANQCNAKVAQFAAQLEQYQKAIQIYEDIGR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
            SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL+RYQ+MDPTFSGTREY+LL D+AA
Sbjct: 181 PSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALDRYQEMDPTFSGTREYKLLVDLAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+ KFTD VKEFDSMT LD WKTTLLLRVKE +KAKELEEDDLT
Sbjct: 241 AVDEEDVVKFTDAVKEFDSMTQLDAWKTTLLLRVKEAIKAKELEEDDLT 289

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.
Vitis vinifera (taxid: 29760)

>sp|Q9SPE6|SNAA2_ARATH Alpha-soluble NSF attachment protein 2 OS=Arabidopsis thaliana GN=ASNAP2 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/289 (78%), Positives = 260/289 (89%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD + RAEEFEKKAEKKLNGWG+FGSKYEDAADL +KAANS+KLAKSWD+AG  Y+KLA
Sbjct: 1   MGDHLVRAEEFEKKAEKKLNGWGIFGSKYEDAADLLEKAANSYKLAKSWDQAGKAYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLK +SKH+AA AY +AA CYKK  +NEA SCLE+AVN+FC+IGRL+MAARYYKEIAE
Sbjct: 61  DCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEIGRLNMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
            YES+   EQ I +FEKAA+ FQNEEVTTSANQC  KVAQYAA+LEQY K+I+IYE+IAR
Sbjct: 121 YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEKAIKIYEDIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
            SLNNNLLKYGVKGHLL AG+C LCK DVV+ITNALE+YQD+DPTF+GTRE + L+D+A+
Sbjct: 181 HSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLAS 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEEDIAKFTDVVKEFDSMTPLD WKTT+LLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLRVKEKLKAKELEEDDLT 289

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M5P8|SNAA_SOLTU Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/289 (74%), Positives = 247/289 (85%), Gaps = 1/289 (0%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD IAR E+FE KAEKKL GW LFGSKYEDAADLFDKA N FKLAKSWDKAGA YVKLA
Sbjct: 1   MGDHIARGEDFENKAEKKLGGWALFGSKYEDAADLFDKAGNCFKLAKSWDKAGAVYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLKL+SKHEAA AY DAAHCYKK++  EA+SCLEQAVN F DIGRL+M+ARYYKEIAE
Sbjct: 61  NCHLKLDSKHEAANAYADAAHCYKKSNIKEAVSCLEQAVNFFLDIGRLNMSARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E N++Q I +     +   +E+V+   NQC +K+AQ++A+ E+Y K+IEI+EEIAR
Sbjct: 121 LYEQEQNLDQAIRYAVYEINP-GSEDVSAPPNQCLKKIAQFSAQNEKYPKAIEIFEEIAR 179

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
            S+NNNLLKYGV+ HLLNAGICQLCKGDVV I NALERYQ++DPTFSGTRE +LL D+AA
Sbjct: 180 HSVNNNLLKYGVREHLLNAGICQLCKGDVVPINNALERYQELDPTFSGTRECKLLVDLAA 239

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+AKFTD VKE+DSMT LD W+TTLLLRVKE LKAKELEEDDLT
Sbjct: 240 AIDEEDVAKFTDAVKEYDSMTQLDAWRTTLLLRVKETLKAKELEEDDLT 288

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Solanum tuberosum (taxid: 4113)

>sp|Q54NP6|SNAA_DICDI Alpha-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpA PE=1 SV=1

 Score =  260 bits (664), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 133/284 (46%), Positives = 192/284 (67%), Gaps = 7/284 (2%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLF------GSKYEDAADLFDKAANSFKLAKSWDKAGA 54
           MGD  A+A+EF   A+K+L G   F       S+Y+DAA  + KAAN FK++K WD+AGA
Sbjct: 1   MGDD-AKAKEFLDAADKRLRGGNFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGA 59

Query: 55  TYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY 114
            + K A C LK  SKH+AA +YV AA CYKK +  +AI+CL+ A+  + D GR +++A++
Sbjct: 60  AFQKAAECFLKGSSKHDAASSYVLAAGCYKKGNVIDAITCLKAAIEYYTDEGRFAISAKH 119

Query: 115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            KEIAELYE+E + +Q I  ++ A+D F  E  T S++QC  K+A ++A+LE+Y KSIEI
Sbjct: 120 QKEIAELYEAEGDFDQAIASYQIASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIEI 179

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234
           YE++A  SL+NNL ++G K + L A +C L   DVV    AL+RY+DM  +F+ TRE RL
Sbjct: 180 YEQVAAASLDNNLTQWGCKEYFLRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRL 239

Query: 235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL 278
           L  I  +    ++  FT+ V EF+S++PLD WKT++LLR+K  +
Sbjct: 240 LDGIIQACRNNNVEDFTNEVAEFNSISPLDSWKTSILLRIKNTI 283

May be required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus (By similarity). Involved in vesicle fusion with nsfA and probably SNARE proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9LXZ5|SNAA1_ARATH Alpha-soluble NSF attachment protein 1 OS=Arabidopsis thaliana GN=ASNAP1 PE=1 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/253 (55%), Positives = 170/253 (67%), Gaps = 37/253 (14%)

Query: 11  FEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH 70
           F+KKAEKKLN    F +KYEDAADL +KA +S+KLAKSWD+AG  Y+KLA+CHLK  S  
Sbjct: 99  FQKKAEKKLNRRRRFDTKYEDAADLLEKARDSYKLAKSWDQAGIAYLKLADCHLKANS-- 156

Query: 71  EAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ 130
             A  Y+    C                                  EIAE YES+   EQ
Sbjct: 157 -LANTYMIMDECMDH-------------------------------EIAEYYESDEMFEQ 184

Query: 131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY 190
            I ++E AA+ FQ EEVTTSANQC  KVAQYA++LEQ  + ++     AR SLNN LLKY
Sbjct: 185 AIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSRFMKTQ---ARHSLNNKLLKY 241

Query: 191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKF 250
           GVKGHLL AG+C LCK DVV+ITNALE+YQD+DPTFSGTRE + L+D+A+++DEEDIAKF
Sbjct: 242 GVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFSGTRECKFLADLASAIDEEDIAKF 301

Query: 251 TDVVKEFDSMTPL 263
           TDV KE DS++PL
Sbjct: 302 TDVSKEIDSVSPL 314

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Binds to SNARE complex and then recruits NSF to disassemble it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q23983|SNAP_DROME Soluble NSF attachment protein OS=Drosophila melanogaster GN=Snap PE=1 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/284 (41%), Positives = 193/284 (67%), Gaps = 9/284 (3%)

Query: 1   MGDQIARAEEFEKKAEKKLN---GW--GLFG--SKYEDAADLFDKAANSFKLAKSWDKAG 53
           MGD   +A +   +AEKKL    G+   LFG  +K EDA + + +A N FK++K+W KAG
Sbjct: 1   MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMFKMSKNWTKAG 60

Query: 54  ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR 113
             + + A  H +  S+H+A   YVDA++CYKK     A++CL ++++++ D+GR +MAA+
Sbjct: 61  ECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVNCLMKSIDIYTDMGRFTMAAK 120

Query: 114 YYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI 172
           +++ IAE+YES+ +N+ ++I  +E+AAD F+ EE  +SAN+C  KVAQYAA+LE Y K+I
Sbjct: 121 HHQSIAEMYESDPNNLAKSIQHYEQAADYFKGEESVSSANKCMLKVAQYAAQLEDYEKAI 180

Query: 173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY 232
            IYE++A  SL ++LLKY  K +   A +C L   D++   +A+E+Y    P F  +RE+
Sbjct: 181 SIYEQVAASSLESSLLKYSAKEYFFRAALCHL-SVDLLNAQHAIEKYAQQYPAFQDSREF 239

Query: 233 RLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKE 276
           +L+  +  +++E++I  FT+ VK++DS++ LD W TT+LLR+K+
Sbjct: 240 KLIKVLCENLEEQNIEGFTEAVKDYDSISRLDQWYTTILLRIKK 283

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus. Also between the endosome and phagosome.

Drosophila melanogaster (taxid: 7227)

>sp|P28663|SNAB_MOUSE Beta-soluble NSF attachment protein OS=Mus musculus GN=Napb PE=1 SV=2

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/269 (42%), Positives = 186/269 (69%), Gaps = 4/269 (1%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct: 30  GLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
            +C     ++ A   ALE+Y++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS
Sbjct: 210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query: 260 MTPLDPWKTTLLLRVKEKLKAKELEEDDL 288
           ++ LD W TT+LLR+K+ ++     + DL
Sbjct: 269 ISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|Q9H115|SNAB_HUMAN Beta-soluble NSF attachment protein OS=Homo sapiens GN=NAPB PE=1 SV=2

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/269 (42%), Positives = 186/269 (69%), Gaps = 4/269 (1%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct: 30  GLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
            +C     ++ A   ALE+Y++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS
Sbjct: 210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query: 260 MTPLDPWKTTLLLRVKEKLKAKELEEDDL 288
           ++ LD W TT+LLR+K+ ++     + DL
Sbjct: 269 ISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Homo sapiens (taxid: 9606)

>sp|P81126|SNAB_BOVIN Beta-soluble NSF attachment protein OS=Bos taurus GN=NAPB PE=1 SV=1

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/269 (42%), Positives = 186/269 (69%), Gaps = 4/269 (1%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct: 30  GLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct: 90  NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+IEI+E+I   +++N LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIFEQIGANTMDNPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
            +C     ++ A   ALE+Y++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS
Sbjct: 210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query: 260 MTPLDPWKTTLLLRVKEKLKAKELEEDDL 288
           ++ LD W TT+LLR+K+ ++     + DL
Sbjct: 269 ISRLDQWLTTMLLRIKKSIQGDGEGDGDL 297

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Bos taurus (taxid: 9913)

>sp|Q9DB05|SNAA_MOUSE Alpha-soluble NSF attachment protein OS=Mus musculus GN=Napa PE=1 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/263 (41%), Positives = 185/263 (70%), Gaps = 4/263 (1%)

Query: 23  GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
           GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct: 30  GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
           + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  ++E+ I  +E++A
Sbjct: 90  NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDVEKAIAHYEQSA 149

Query: 140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
           D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct: 150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTSAMDSPLLKYSAKDYFFKA 209

Query: 200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
            +C  C  D++    A+++Y+++ P FS +RE +L+  +  + +E+++  +T+ VKE+DS
Sbjct: 210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query: 260 MTPLDPWKTTLLLRVKEKLKAKE 282
           ++ LD W TT+LLR+K+ ++  E
Sbjct: 269 ISRLDQWLTTMLLRIKKTIQGDE 291

Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
211906448	289	alpha-soluble NSF attachment protein [Go	1.0	1.0	0.861	1e-147
255638429	289	unknown [Glycine max]	1.0	1.0	0.861	1e-146
357461465	289	Alpha-soluble NSF attachment protein [Me	1.0	1.0	0.844	1e-145
357492899	289	Alpha-soluble NSF attachment protein [Me	1.0	1.0	0.837	1e-145
255559601	289	alpha-soluble nsf attachment protein, pu	1.0	1.0	0.871	1e-142
388516595	289	unknown [Lotus japonicus]	1.0	1.0	0.871	1e-142
224101229	288	predicted protein [Populus trichocarpa]	0.993	0.996	0.839	1e-142
356501195	289	PREDICTED: alpha-soluble NSF attachment	1.0	1.0	0.809	1e-141
356540024	289	PREDICTED: alpha-soluble NSF attachment	1.0	1.0	0.865	1e-141
409691608	289	alpha-SNAP protein [Glycine max]	1.0	1.0	0.868	1e-141

>gi|211906448|gb|ACJ11717.1| alpha-soluble NSF attachment protein [Gossypium hirsutum]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/289 (86%), Positives = 275/289 (95%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGDQ+A+ EEF KKAEKKLNGWGLF SKYEDAADLFDKAAN FKLAKSWDKAG+TYVKLA
Sbjct: 1   MGDQLAKGEEFVKKAEKKLNGWGLFSSKYEDAADLFDKAANCFKLAKSWDKAGSTYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLK +SKHE AQAYVDAAHCYKKT++ EAISCL+QAVN+FCDIGRLSMAARYYKEIAE
Sbjct: 61  NCHLKSDSKHETAQAYVDAAHCYKKTATKEAISCLQQAVNLFCDIGRLSMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NIEQ + +FEKAAD FQNE+V++SANQCKQKVAQ+AA++EQY K+IEIYEEIAR
Sbjct: 121 LYESEQNIEQAMDYFEKAADFFQNEDVSSSANQCKQKVAQFAAQIEQYQKAIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSL NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD+DPTFSGTREY+LL+DIA+
Sbjct: 181 QSLTNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDLDPTFSGTREYKLLADIAS 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED++KFT+VVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVSKFTEVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638429|gb|ACU19524.1| unknown [Glycine max]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/289 (86%), Positives = 276/289 (95%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++  EFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGGEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAHCYKKT+ NE++SCL++AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHCYKKTNINESVSCLDRAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSI+IYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSLNNNLLKYGVKGHLLNAGICQLCK DVVAIT+ALERYQ++DPTFSGTREYRLL+DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKEDVVAITDALERYQELDPTFSGTREYRLLADIAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461465|ref|XP_003601014.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|217071842|gb|ACJ84281.1| unknown [Medicago truncatula] gi|355490062|gb|AES71265.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|388493040|gb|AFK34586.1| unknown [Medicago truncatula]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/289 (84%), Positives = 274/289 (94%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M D +ARAE+FEKKAEKKL+GWGLF SKY+DAADLFDK+ANSFKLAKSWDKA ATY+KLA
Sbjct: 1   MADHLARAEDFEKKAEKKLSGWGLFSSKYDDAADLFDKSANSFKLAKSWDKAAATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLK+ESKHEAAQAYVDA+HCYKKT+ +EA+SCL+ AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  NCHLKMESKHEAAQAYVDASHCYKKTNISEAVSCLDHAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NIEQ +V+FEK+AD +QNEEVTTSANQCKQKVAQ++A+LEQY  SI+IYEEIAR
Sbjct: 121 LYESEQNIEQAVVYFEKSADFYQNEEVTTSANQCKQKVAQFSAQLEQYQTSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSLNNNLLKYGVKGHLLNAGICQLCKGD VAI+NALERYQ++DPTFSGTREYRLL+D+AA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDPVAISNALERYQELDPTFSGTREYRLLADVAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+ KFTDVVK+FDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AVDEEDVGKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492899|ref|XP_003616738.1| Alpha-soluble NSF attachment protein [Medicago truncatula] gi|355518073|gb|AES99696.1| Alpha-soluble NSF attachment protein [Medicago truncatula]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 242/289 (83%), Positives = 274/289 (94%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGDQ+ARAE+FE KAEKKL GWG+FGSK+EDAADLFDK+AN +KLAKSWDKAG+TY+KLA
Sbjct: 1   MGDQLARAEDFENKAEKKLGGWGMFGSKFEDAADLFDKSANCYKLAKSWDKAGSTYIKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCH+KLESKHEAA AYVDAAHCYKKT+ NEAISCL+ AVNMFCDIGR+SMAARY KEIAE
Sbjct: 61  NCHVKLESKHEAASAYVDAAHCYKKTNMNEAISCLDNAVNMFCDIGRISMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           + ESE NIE+ +V++EK+AD +++EEVTTSANQCKQKVAQY+A+LEQY KSIEIYEEIAR
Sbjct: 121 MCESEQNIERALVYYEKSADFYESEEVTTSANQCKQKVAQYSAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ++DPTFSGTREYRLL+D+AA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTREYRLLADVAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+ KFT+VVKEFDSM+PLD WKTTL LRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVGKFTEVVKEFDSMSPLDSWKTTLFLRVKEKLKAKELEEDDLT 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559601|ref|XP_002520820.1| alpha-soluble nsf attachment protein, putative [Ricinus communis] gi|223539951|gb|EEF41529.1| alpha-soluble nsf attachment protein, putative [Ricinus communis]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/289 (87%), Positives = 276/289 (95%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQIA+ EEFEKKAEKKLNGWGLFGSKYEDA+DLFDKAANSFKLAKSWD+AG+TYVKLA
Sbjct: 1   MSDQIAKGEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDRAGSTYVKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           NCHLKL+SKHEAAQAYVDAAHCYKKT++NEAISCL QAV MFCDIGR+SMAARYYKEIAE
Sbjct: 61  NCHLKLDSKHEAAQAYVDAAHCYKKTTTNEAISCLGQAVEMFCDIGRISMAARYYKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE N+E+ + F+EKAAD FQ EEVTTSANQCKQKVAQ+AA+LEQY K+IEIYEEIAR
Sbjct: 121 LYESEANVEKAMDFYEKAADFFQGEEVTTSANQCKQKVAQFAAQLEQYQKAIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
            SL+NNLLKYGVKGHLLNAGIC LCKGDVV++TNALERYQD+DPTFSGTREYRLL+D+AA
Sbjct: 181 HSLSNNLLKYGVKGHLLNAGICHLCKGDVVSVTNALERYQDLDPTFSGTREYRLLADVAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516595|gb|AFK46359.1| unknown [Lotus japonicus]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/289 (87%), Positives = 278/289 (96%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++AEEFEKKAEKKLNGWGLFGSKYEDA+DLFDKAANSFKLAKSWDKAG+TY++LA
Sbjct: 1   MADQLSKAEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDKAGSTYLRLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQAYVDAAHCYKKT+  EA+SCL+ AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAYVDAAHCYKKTNIKEAVSCLDHAVNIFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           L+ESE NIEQ +V+FEKAAD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSIEIYEEIAR
Sbjct: 121 LHESEQNIEQAVVYFEKAADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSL+NNLLKYGVKGHLLNAGICQLCKGDVVAI+NALERYQ++DPTFSGTREYRLL+DIAA
Sbjct: 181 QSLSNNLLKYGVKGHLLNAGICQLCKGDVVAISNALERYQELDPTFSGTREYRLLADIAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+ KFTDVVK+FDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 TLDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101229|ref|XP_002312193.1| predicted protein [Populus trichocarpa] gi|118483327|gb|ABK93565.1| unknown [Populus trichocarpa] gi|118486886|gb|ABK95277.1| unknown [Populus trichocarpa] gi|118487749|gb|ABK95698.1| unknown [Populus trichocarpa] gi|222852013|gb|EEE89560.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/287 (83%), Positives = 270/287 (94%)

Query: 3   DQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANC 62
           D  A+ ++FEKKAEKKLNGWG+FGSKYEDAADLFDKAAN+FKLAKSW+KAG+TYVKL  C
Sbjct: 2   DLAAKGDDFEKKAEKKLNGWGIFGSKYEDAADLFDKAANNFKLAKSWEKAGSTYVKLGQC 61

Query: 63  HLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY 122
           HLKL+SKHEAA AYVDAAHCYKKTS+ EAISCL QAV+M CDIGR+SMAARY+KEIAELY
Sbjct: 62  HLKLDSKHEAASAYVDAAHCYKKTSTTEAISCLAQAVDMLCDIGRISMAARYFKEIAELY 121

Query: 123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS 182
           ES+ NIE+++ +++KAAD FQNE+VTTSANQCKQKVA++AA+LEQY  SI+IYEEIARQS
Sbjct: 122 ESDANIEKSMEYYDKAADFFQNEDVTTSANQCKQKVAEFAAQLEQYQTSIDIYEEIARQS 181

Query: 183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM 242
           L NNLLKYGVKGHLLNAGIC LCKGDVVAITNALERYQ+MDPTFSGTREY+LL+DIAA++
Sbjct: 182 LKNNLLKYGVKGHLLNAGICHLCKGDVVAITNALERYQEMDPTFSGTREYKLLADIAAAI 241

Query: 243 DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           DEEDIAKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 242 DEEDIAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501195|ref|XP_003519412.1| PREDICTED: alpha-soluble NSF attachment protein 2-like [Glycine max]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/289 (80%), Positives = 272/289 (94%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           MGD +ARAE+FE KAEKKL+ WGLFGSK+EDAADLFDK+ANS+KLAKSWDKAG+TY+KLA
Sbjct: 1   MGDHLARAEDFENKAEKKLSSWGLFGSKFEDAADLFDKSANSYKLAKSWDKAGSTYIKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQAYVDAA CYKKT+ NE++SCL+ AVN+FC+IGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAYVDAARCYKKTNINESVSCLDNAVNIFCEIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYESE NI Q + ++EK+AD F+NEEV TSANQCKQKVAQ++A+LEQY +SIEIYE+IAR
Sbjct: 121 LYESEQNISQAVAYYEKSADFFENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEDIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSL+N LLKYGVKGHLLNAGIC+LCKGDV+AITNALERYQD+DPTFSGTREYRLL+DIAA
Sbjct: 181 QSLSNTLLKYGVKGHLLNAGICELCKGDVIAITNALERYQDLDPTFSGTREYRLLADIAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+ KFT+V+KEFDS+TPLD WKTTLLLRVK+KLKAKE+EEDDLT
Sbjct: 241 AIDEEDVGKFTEVIKEFDSLTPLDSWKTTLLLRVKDKLKAKEIEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540024|ref|XP_003538491.1| PREDICTED: alpha-soluble NSF attachment protein-like [Glycine max]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/289 (86%), Positives = 276/289 (95%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++ EEFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAH YKKT+ NE++SCL+QAVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHSYKKTNINESVSCLDQAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSIEIYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSLNNNLLKYGVKGHLLNAGICQLCKGDV+A+TNALERYQ++DPTFSGTREYR L+DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVIAVTNALERYQELDPTFSGTREYRFLADIAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409691608|gb|AFV36706.1| alpha-SNAP protein [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/289 (86%), Positives = 277/289 (95%)

Query: 1   MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
           M DQ+++ EEFEKKAEKKL+GWGLFGSKYEDAADLFDKAAN FKLAKSWDKAGATY+KLA
Sbjct: 1   MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLA 60

Query: 61  NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
           +CHLKLESKHEAAQA+VDAAHCYKKT+ NE++SCL++AVN+FCDIGRLSMAARY KEIAE
Sbjct: 61  SCHLKLESKHEAAQAHVDAAHCYKKTNINESVSCLDRAVNLFCDIGRLSMAARYLKEIAE 120

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           LYE E NIEQ +V++EK+AD FQNEEVTTSANQCKQKVAQ+AA+LEQY KSI+IYEEIAR
Sbjct: 121 LYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIAR 180

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
           QSLNNNLLKYGVKGHLLNAGICQLCK DVVAITNALERYQ++DPTFSGTREYRLL+DIAA
Sbjct: 181 QSLNNNLLKYGVKGHLLNAGICQLCKEDVVAITNALERYQELDPTFSGTREYRLLADIAA 240

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT 289
           ++DEED+AKFTDVVKEFDSMTPLD WKTTLLLRVKEKLKAKELEEDDLT
Sbjct: 241 AIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2078366	289	ALPHA-SNAP2 "AT3G56190" [Arabi	0.930	0.930	0.728	1e-107
DICTYBASE|DDB_G0285111	291	snpA "soluble NSF attachment p	0.865	0.859	0.474	8.1e-60
ZFIN|ZDB-GENE-060531-160	295	si:dkeyp-117b8.3 "si:dkeyp-117	0.844	0.827	0.451	3.2e-58
ZFIN|ZDB-GENE-030131-5290	295	napa "N-ethylmaleimide sensiti	0.847	0.830	0.441	1.1e-57
UNIPROTKB|F1RLB6	295	NAPA "Uncharacterized protein"	0.851	0.833	0.424	1.2e-56
FB|FBgn0250791	292	Snap "Soluble NSF attachment p	0.847	0.839	0.421	3.3e-56
UNIPROTKB|A5D7S0	295	NAPA "Alpha-soluble NSF attach	0.851	0.833	0.42	5.3e-56
UNIPROTKB|E2RE59	298	NAPB "Uncharacterized protein"	0.851	0.825	0.432	6.8e-56
UNIPROTKB|E2RQE7	295	NAPA "Uncharacterized protein"	0.851	0.833	0.424	6.8e-56
UNIPROTKB|E1BQW1	296	NAPB "Uncharacterized protein"	0.851	0.831	0.432	8.6e-56

TAIR|locus:2078366 ALPHA-SNAP2 "AT3G56190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
 Identities = 196/269 (72%), Positives = 229/269 (85%)

Query:     1 MGDQIARXXXXXXXXXXXLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLA 60
             MGD + R           LNGWG+FGSKYEDAADL +KAANS+KLAKSWD+AG  Y+KLA
Sbjct:     1 MGDHLVRAEEFEKKAEKKLNGWGIFGSKYEDAADLLEKAANSYKLAKSWDQAGKAYLKLA 60

Query:    61 NCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
             +CHLK +SKH+AA AY +AA CYKK  +NEA SCLE+AVN+FC+IGRL+MAARYYKEIAE
Sbjct:    61 DCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEIGRLNMAARYYKEIAE 120

Query:   121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
              YES+   EQ I +FEKAA+ FQNEEVTTSANQC  KVAQYAA+LEQY K+I+IYE+IAR
Sbjct:   121 YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEKAIKIYEDIAR 180

Query:   181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
              SLNNNLLKYGVKGHLL AG+C LCK DVV+ITNALE+YQD+DPTF+GTRE + L+D+A+
Sbjct:   181 HSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDPTFTGTRECKFLADLAS 240

Query:   241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTT 269
             ++DEEDIAKFTDVVKEFDSMTPLD WKTT
Sbjct:   241 AIDEEDIAKFTDVVKEFDSMTPLDSWKTT 269

GO:0005483 "soluble NSF attachment protein activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

DICTYBASE|DDB_G0285111 snpA "soluble NSF attachment protein alpha isoform" [Dictyostelium discoideum (taxid:44689)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 120/253 (47%), Positives = 174/253 (68%)

Query:    20 NGWGLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY 76
             N + +FG   S+Y+DAA  + KAAN FK++K WD+AGA + K A C LK  SKH+AA +Y
Sbjct:    22 NFFKMFGGGSSRYDDAASDYTKAANLFKMSKKWDQAGAAFQKAAECFLKGSSKHDAASSY 81

Query:    77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE 136
             V AA CYKK +  +AI+CL+ A+  + D GR +++A++ KEIAELYE+E + +Q I  ++
Sbjct:    82 VLAAGCYKKGNVIDAITCLKAAIEYYTDEGRFAISAKHQKEIAELYEAEGDFDQAIASYQ 141

Query:   137 KAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL 196
              A+D F  E  T S++QC  K+A ++A+LE+Y KSIEIYE++A  SL+NNL ++G K + 
Sbjct:   142 IASDYFDGENSTVSSHQCLLKIALFSAQLERYEKSIEIYEQVAAASLDNNLTQWGCKEYF 201

Query:   197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKE 256
             L A +C L   DVV    AL+RY+DM  +F+ TRE RLL  I  +    ++  FT+ V E
Sbjct:   202 LRACLCYLAADDVVGAERALQRYKDMQASFNSTRECRLLDGIIQACRNNNVEDFTNEVAE 261

Query:   257 FDSMTPLDPWKTT 269
             F+S++PLD WKT+
Sbjct:   262 FNSISPLDSWKTS 274

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005483 "soluble NSF attachment protein activity" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-060531-160 si:dkeyp-117b8.3 "si:dkeyp-117b8.3" [Danio rerio (taxid:7955)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 112/248 (45%), Positives = 172/248 (69%)

Query:    25 FGS--KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC 82
             FGS  + E+A D++ +AAN FK+AK+W+ AG  + K A  HLK++SKH AA  ++DA + 
Sbjct:    32 FGSSSRVEEACDMYVRAANMFKMAKNWNAAGDAFCKAALLHLKVDSKHNAAMNFLDAGNA 91

Query:    83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADM 141
             +KK    EAI C  +A++++ D+GR ++AA+++  +AE+YESE  +I++ I  +E+AAD 
Sbjct:    92 FKKADPQEAIGCFSRAIDIYTDMGRFNIAAKHHISVAEIYESELLDIDKAIAHYEQAADY 151

Query:   142 FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI 201
             ++ EE T++AN+C  KVA YAA+LEQY K+IEI+E+I   S++  LLKYG K H   A +
Sbjct:   152 YKGEESTSAANKCLLKVANYAAQLEQYQKAIEIFEQIGTYSMDTTLLKYGAKDHFFKAAL 211

Query:   202 CQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMT 261
             C  C  D++    A+++Y+DM P FS  RE +LL  +  + DE++I  + D V+EFDS+T
Sbjct:   212 CHFCV-DMLNCRLAVQKYEDMFPAFSDARECKLLKKLLDAHDEQNIDAYADAVREFDSIT 270

Query:   262 PLDPWKTT 269
              LD W+TT
Sbjct:   271 RLDQWQTT 278

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-030131-5290 napa "N-ethylmaleimide sensitive fusion protein attachment protein alpha" [Danio rerio (taxid:7955)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 110/249 (44%), Positives = 177/249 (71%)

Query:    24 LFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81
             LFG  SK EDA DL+ +AAN FK+AK+W  AG  + + A  HL+++SKH+AA  ++DA +
Sbjct:    31 LFGGSSKMEDACDLYGRAANMFKMAKNWSAAGNAFSQAALLHLQMQSKHDAATNFIDAGN 90

Query:    82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAAD 140
              +KK+   EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +I++ I  +E+AAD
Sbjct:    91 AFKKSDPQEAINCLNRAIEIYTDMGRFTIAAKHHVTIAEVYETELVDIDKAIAHYEQAAD 150

Query:   141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200
              ++ EE T+SAN+C  KVA YAA+LEQY K+IEIYE++A  ++++ LLKY  K +   A 
Sbjct:   151 YYKGEESTSSANKCLLKVATYAAQLEQYPKAIEIYEQVATHAMDSTLLKYSAKDYFFKAA 210

Query:   201 ICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSM 260
             +C  C  D++    AL++Y++M P FS +RE +L+  +  + +E+++  +TD VKE+D++
Sbjct:   211 LCHFCV-DMLNAKLALQKYEEMFPAFSDSRECKLMKKLLDAFEEQNVDAYTDAVKEYDTI 269

Query:   261 TPLDPWKTT 269
             + LD W TT
Sbjct:   270 SRLDQWLTT 278

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1RLB6 NAPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 106/250 (42%), Positives = 176/250 (70%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
              +C  C  D++    A+++Y+++ P FS +REY+L+  +  + +E+++  +T+ VKE+DS
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSREYKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query:   260 MTPLDPWKTT 269
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

FB|FBgn0250791 Snap "Soluble NSF attachment protein" [Drosophila melanogaster (taxid:7227)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 105/249 (42%), Positives = 172/249 (69%)

Query:    24 LFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAH 81
             LFG  +K EDA + + +A N FK++K+W KAG  + + A  H +  S+H+A   YVDA++
Sbjct:    29 LFGGSNKVEDAIECYQRAGNMFKMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASN 88

Query:    82 CYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAAD 140
             CYKK     A++CL ++++++ D+GR +MAA++++ IAE+YES+ +N+ ++I  +E+AAD
Sbjct:    89 CYKKVDVESAVNCLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAAD 148

Query:   141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG 200
              F+ EE  +SAN+C  KVAQYAA+LE Y K+I IYE++A  SL ++LLKY  K +   A 
Sbjct:   149 YFKGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSAKEYFFRAA 208

Query:   201 ICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSM 260
             +C L   D++   +A+E+Y    P F  +RE++L+  +  +++E++I  FT+ VK++DS+
Sbjct:   209 LCHLSV-DLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLEEQNIEGFTEAVKDYDSI 267

Query:   261 TPLDPWKTT 269
             + LD W TT
Sbjct:   268 SRLDQWYTT 276

GO:0005483 "soluble NSF attachment protein activity" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0043679 "axon terminus" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0048526 "imaginal disc-derived wing expansion" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|A5D7S0 NAPA "Alpha-soluble NSF attachment protein" [Bos taurus (taxid:9913)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 105/250 (42%), Positives = 176/250 (70%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG+ + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYARAANMFKMAKNWSAAGSAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
              +C  C  D++    A+++Y+++ P FS +RE +L+  +  + +E+++  +T+ VKE+DS
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTEAVKEYDS 268

Query:   260 MTPLDPWKTT 269
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RE59 NAPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 108/250 (43%), Positives = 174/250 (69%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  +K E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct:    30 GLFGGNTKIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
              +C     ++ A   ALE+Y++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS
Sbjct:   210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query:   260 MTPLDPWKTT 269
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RQE7 NAPA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 106/250 (42%), Positives = 175/250 (70%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  SK E+A +++ +AAN FK+AK+W  AG  + + A  HL+L+SKH+AA  +VDA 
Sbjct:    30 GLFGGSSKIEEACEIYTRAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATCFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + +KK    EAI+CL +A+ ++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E++A
Sbjct:    90 NAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
              +C  C  D++    A+++Y+++ P FSG+RE  L+  +  + +E++I  +T+ VKE+D+
Sbjct:   210 ALCHFCI-DMLNAKLAVQKYEELFPAFSGSRECTLMKKLLDAHEEQNIDSYTEAVKEYDT 268

Query:   260 MTPLDPWKTT 269
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

GO:0045176 "apical protein localization" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BQW1 NAPB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 108/250 (43%), Positives = 174/250 (69%)

Query:    23 GLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
             GLFG  ++ E+A +++ +AAN FK+AK+W  AG  + + A  H++L+SKH++A ++VDA 
Sbjct:    30 GLFGGNTRVEEACEMYTRAANMFKIAKNWSAAGNAFCQAAKLHMQLQSKHDSATSFVDAG 89

Query:    81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAA 139
             + YKK    EAI+CL  A++++ D+GR ++AA+++  IAE+YE+E  +IE+ I  +E+AA
Sbjct:    90 NAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYEAELVDIEKAIAHYEQAA 149

Query:   140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA 199
             D ++ EE  +SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A
Sbjct:   150 DYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGTNTMDNPLLKYSAKEYFFKA 209

Query:   200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS 259
              +C     ++ A   ALE+Y++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS
Sbjct:   210 ALCHFIVDELNAKL-ALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDS 268

Query:   260 MTPLDPWKTT 269
             ++ LD W TT
Sbjct:   269 ISRLDQWLTT 278

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0010807 "regulation of synaptic vesicle priming" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0035494 "SNARE complex disassembly" evidence=IEA

GO:0070044 "synaptobrevin 2-SNAP-25-syntaxin-1a complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93798	SNAA_VITVI	No assigned EC number	0.7681	1.0	1.0	yes	no
Q9H115	SNAB_HUMAN	No assigned EC number	0.4200	0.9169	0.8892	yes	no
Q75D68	SEC17_ASHGO	No assigned EC number	0.3287	0.9792	0.9725	yes	no
Q9SPE6	SNAA2_ARATH	No assigned EC number	0.7820	1.0	1.0	yes	no
P28663	SNAB_MOUSE	No assigned EC number	0.4200	0.9169	0.8892	yes	no
P32602	SEC17_YEAST	No assigned EC number	0.3095	0.9861	0.9760	yes	no
Q54NP6	SNAA_DICDI	No assigned EC number	0.4683	0.9584	0.9518	yes	no
P85969	SNAB_RAT	No assigned EC number	0.4200	0.9134	0.8888	yes	no
Q9P4D0	SEC17_PICPG	No assigned EC number	0.3299	0.9861	0.9595	yes	no
Q9P4X4	SEC17_SCHPO	No assigned EC number	0.3573	0.9757	0.9757	yes	no
Q23983	SNAP_DROME	No assigned EC number	0.4190	0.9515	0.9417	yes	no
Q9M5P8	SNAA_SOLTU	No assigned EC number	0.7404	0.9965	1.0	N/A	no
P81125	SNAA_BOVIN	No assigned EC number	0.4144	0.8961	0.8779	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VIII0297 SubName- Full=Putative uncharacterized protein; (289 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG1586	288	consensus Protein required for fusion of vesicles	100.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	100.0
KOG1585	308	consensus Protein required for fusion of vesicles	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.77
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.76
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.72
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.71
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.7
KOG1586	288	consensus Protein required for fusion of vesicles	99.66
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.61
KOG2003	840	consensus TPR repeat-containing protein [General f	99.61
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.6
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.59
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.43
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.43
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.42
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
KOG1585	308	consensus Protein required for fusion of vesicles	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.38
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.37
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.37
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.33
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.31
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.29
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.28
PRK12370	553	invasion protein regulator; Provisional	99.28
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.27
KOG1126	638	consensus DNA-binding cell division cycle control	99.26
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.25
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.2
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.15
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.11
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.08
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.08
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.06
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.06
KOG1125	579	consensus TPR repeat-containing protein [General f	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	99.05
PRK15359	144	type III secretion system chaperone protein SscB;	99.04
PRK11189	296	lipoprotein NlpI; Provisional	99.01
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.01
KOG2003	840	consensus TPR repeat-containing protein [General f	99.01
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.99
KOG1129	478	consensus TPR repeat-containing protein [General f	98.98
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.98
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.95
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.94
KOG1129	478	consensus TPR repeat-containing protein [General f	98.93
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.81
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.76
KOG2076	895	consensus RNA polymerase III transcription factor	98.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.73
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.69
KOG1125	579	consensus TPR repeat-containing protein [General f	98.69
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.64
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
KOG0553	304	consensus TPR repeat-containing protein [General f	98.64
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.62
PLN02789	320	farnesyltranstransferase	98.62
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.61
PRK14574	822	hmsH outer membrane protein; Provisional	98.6
PLN02789	320	farnesyltranstransferase	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.56
KOG2076	895	consensus RNA polymerase III transcription factor	98.53
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.52
PLN03077	857	Protein ECB2; Provisional	98.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.5
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.49
PRK14574	822	hmsH outer membrane protein; Provisional	98.47
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.44
KOG0553	304	consensus TPR repeat-containing protein [General f	98.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.43
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.43
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.42
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.42
PRK10803	263	tol-pal system protein YbgF; Provisional	98.41
PLN03218	1060	maturation of RBCL 1; Provisional	98.41
PLN03218	1060	maturation of RBCL 1; Provisional	98.4
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.38
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.35
PRK10803	263	tol-pal system protein YbgF; Provisional	98.33
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.32
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	98.31
PF12688	120	TPR_5: Tetratrico peptide repeat	98.3
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.26
PF12688	120	TPR_5: Tetratrico peptide repeat	98.25
KOG4555	175	consensus TPR repeat-containing protein [Function	98.22
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.22
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.2
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.16
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.16
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.15
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.14
KOG4555	175	consensus TPR repeat-containing protein [Function	98.13
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.11
PRK15331	165	chaperone protein SicA; Provisional	98.11
PLN03077	857	Protein ECB2; Provisional	98.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.99
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.98
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.96
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.95
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.9
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.9
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.86
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.83
PF13512	142	TPR_18: Tetratricopeptide repeat	97.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.8
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.75
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.73
PF13371	73	TPR_9: Tetratricopeptide repeat	97.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.7
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.7
KOG4234	271	consensus TPR repeat-containing protein [General f	97.68
PRK15331	165	chaperone protein SicA; Provisional	97.67
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.63
KOG3024	312	consensus Uncharacterized conserved protein [Funct	97.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.52
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.51
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.51
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.51
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.51
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.5
KOG4234	271	consensus TPR repeat-containing protein [General f	97.45
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.43
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.42
PF13512	142	TPR_18: Tetratricopeptide repeat	97.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.36
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.28
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.25
PRK11906	458	transcriptional regulator; Provisional	97.23
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.23
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.22
PF13371	73	TPR_9: Tetratricopeptide repeat	97.22
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.21
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.21
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.15
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.13
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.13
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.12
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.08
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.01
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.0
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.99
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.96
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.93
PRK11906	458	transcriptional regulator; Provisional	96.9
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.88
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.84
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.81
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.8
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.72
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.69
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.69
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.66
PF13431	34	TPR_17: Tetratricopeptide repeat	96.66
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.64
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.63
KOG2581	493	consensus 26S proteasome regulatory complex, subun	96.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.59
PF13428	44	TPR_14: Tetratricopeptide repeat	96.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.52
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	96.37
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.35
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.28
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.21
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.16
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	96.14
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.07
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.03
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.0
PF13431	34	TPR_17: Tetratricopeptide repeat	95.99
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.98
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.96
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	95.95
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.89
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.82
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.75
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.61
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.55
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.42
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.24
PF13428	44	TPR_14: Tetratricopeptide repeat	95.22
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.19
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.1
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.98
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.9
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.84
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.77
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.76
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.7
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.61
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.57
KOG2908	380	consensus 26S proteasome regulatory complex, subun	94.55
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.3
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.17
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	94.15
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	94.11
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.97
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.91
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	93.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.69
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	92.94
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.7
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.58
KOG2471	696	consensus TPR repeat-containing protein [General f	92.37
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.95
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.84
KOG0687	393	consensus 26S proteasome regulatory complex, subun	91.63
KOG2471	696	consensus TPR repeat-containing protein [General f	91.53
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	91.3
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.26
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.03
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.79
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.64
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.43
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.41
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	90.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.82
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.67
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	89.47
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	88.97
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.89
PRK10941	269	hypothetical protein; Provisional	88.64
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	88.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.97
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.51
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	87.2
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	87.15
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	86.36
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	86.23
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	86.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	86.04
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.98
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.8
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.74
KOG2908	380	consensus 26S proteasome regulatory complex, subun	85.66
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	85.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	85.4
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.01
PRK10941	269	hypothetical protein; Provisional	84.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.7
COG5187	412	RPN7 26S proteasome regulatory complex component,	84.6
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	84.59
cd02656	75	MIT MIT: domain contained within Microtubule Inter	84.26
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	84.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	84.03
COG5187	412	RPN7 26S proteasome regulatory complex component,	83.84
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	83.8
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.35
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.21
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.78
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	82.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	82.51
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	82.48
KOG3364	149	consensus Membrane protein involved in organellar	82.42
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.21
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.57
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	81.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.16
PF04212	69	MIT: MIT (microtubule interacting and transport) d	81.02
PF12854	34	PPR_1: PPR repeat	80.79
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.71
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	80.41

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-48  Score=309.79  Aligned_cols=281  Identities=54%  Similarity=0.937  Sum_probs=268.8

Q ss_pred             hhHHHHHHHHHHhhcc---CCCCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992            6 ARAEEFEKKAEKKLNG---WGLFG--SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA   80 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~---~~~~~--~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a   80 (289)
                      .+|..++++|||.+++   +++|+  +.|++|+++|.+|++.|+..++|+.|..+|.++++++.+.|+.+.++.+|..++
T Consensus         2 ~~a~~l~k~AEkK~~~s~gF~lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~   81 (288)
T KOG1586|consen    2 SDAVQLMKKAEKKLNGSGGFLLFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA   81 (288)
T ss_pred             ccHHHHHHHHHHhcccCCcccccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            4789999999999994   34565  789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992           81 HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (289)
Q Consensus        81 ~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~  159 (289)
                      .||++.++.+|+.|+++|++||.+.|++..+|+....||.+|+.. .++++||.+|++|.+.|....+..+++.|+.+.+
T Consensus        82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA  161 (288)
T KOG1586|consen   82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA  161 (288)
T ss_pred             HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999975 8999999999999999999988899999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 022992          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA  239 (289)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~  239 (289)
                      .+-..+++|.+|+.+|+++....+++++.+|+++++++++|+||++..|...+..+++++.+++|.|.+++|+.++..|+
T Consensus       162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~  241 (288)
T KOG1586|consen  162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL  241 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence            99999999999999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCCCC
Q 022992          240 ASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT  289 (289)
Q Consensus       240 ~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (289)
                      .++..+|.+.|.+.++.|+++++||.|.+++|.||++++...+   |||+
T Consensus       242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~siq~~e---dDL~  288 (288)
T KOG1586|consen  242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKKSIQGDE---DDLR  288 (288)
T ss_pred             HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhccc---cccC
Confidence            9999999999999999999999999999999999999998754   3664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=100.00  E-value=1.1e-48  Score=337.81  Aligned_cols=274  Identities=48%  Similarity=0.823  Sum_probs=247.9

Q ss_pred             hhHHHHHHHHHHhhccC----CCCC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992            6 ARAEEFEKKAEKKLNGW----GLFG---SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD   78 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~----~~~~---~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~   78 (289)
                      ++|++++++|+|++|++    ++|+   |||++|+++|.+||++|+..|+|++|+++|.++++++.+++++..++.+|.+
T Consensus         1 ~~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~   80 (282)
T PF14938_consen    1 QEAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEE   80 (282)
T ss_dssp             -HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            47999999999999942    2333   6999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992           79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus        79 ~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      ++.+|++.++++|+++|++|+++|...|++..+++++.++|.+|... |++++|+++|++|+++|+..+.+.....++.+
T Consensus        81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~  160 (282)
T PF14938_consen   81 AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSD  237 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~  237 (289)
                      +|.++..+|+|++|+++|++++...+..+..+++++.+++++++|++..||+..|.+.|+++..++|+|.+++|+.++..
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~  240 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED  240 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            99999999999999999999987767777778888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      |+.++..+|.+.|++++..|+.+++||||.+++|.+|+++|.
T Consensus       241 l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~~~~  282 (282)
T PF14938_consen  241 LLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKKKIE  282 (282)
T ss_dssp             HHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999873

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-31  Score=213.74  Aligned_cols=266  Identities=19%  Similarity=0.267  Sum_probs=234.0

Q ss_pred             HHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Q 022992            8 AEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT   86 (289)
Q Consensus         8 a~~~~~~A~~~~k-~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~   86 (289)
                      |...+.+|.++.+ ....|+|||+.|+..|.+|+.+|+..++|++|..+.++|.+.++...++..+|.+|+.++.+.++.
T Consensus         5 aakki~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~   84 (308)
T KOG1585|consen    5 AAKKISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL   84 (308)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            4455566666665 445699999999999999999999999999999999999999999999999999999999999988


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (289)
Q Consensus        87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  165 (289)
                       .+.+++.+|++|+.+|..+|.++.++.++.+.|.+++. -+++.|+.+|++++.+++..+..+.+.+.+..++.+++++
T Consensus        85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen   85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence             99999999999999999999999999999999999998 8999999999999999999998898999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHhhccccccc-hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcc
Q 022992          166 EQYHKSIEIYEEIARQSLNNNLLKYG-VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDE  244 (289)
Q Consensus       166 g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~  244 (289)
                      .+|++|...+.+-......-.  .++ ....+..+.++|+...|+..|.++++...+ .|.|..+.++..+.+|+.++..
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q-ip~f~~sed~r~lenLL~ayd~  240 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ-IPAFLKSEDSRSLENLLTAYDE  240 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc-CccccChHHHHHHHHHHHHhcc
Confidence            999999998877642211110  111 223355667889999999999999998544 6889899999999999999999


Q ss_pred             cCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992          245 EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       245 ~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~  282 (289)
                      ||.+.+...+.. +.++.+|    ++..++.+.|++|+
T Consensus       241 gD~E~~~kvl~s-p~~r~MD----neya~l~kdl~~P~  273 (308)
T KOG1585|consen  241 GDIEEIKKVLSS-PTVRNMD----NEYAHLNKDLSNPN  273 (308)
T ss_pred             CCHHHHHHHHcC-hHhhhhh----HHHHHHhhccCCCC
Confidence            999999999998 9999998    88999998888775

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=9.4e-20  Score=163.82  Aligned_cols=210  Identities=21%  Similarity=0.303  Sum_probs=160.7

Q ss_pred             CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      ..++.|+.+|.+|+.              +|..+|..+-|+++|.+|+++..+.      -.+|.++|++.... +..+|
T Consensus       266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd~G~V~ea  339 (966)
T KOG4626|consen  266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF------PDAYNNLANALKDKGSVTEA  339 (966)
T ss_pred             hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHhccchHHH
Confidence            566777777777743              3667777777777777777775443      23778888888776 89999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.||.+|+.+.+..      +.++.++|.++.++|..++|+.+|.+|+++++..      +...++||.+|..+|++++|
T Consensus       340 ~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  340 VDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             HHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHH
Confidence            99999999887644      4489999999999999999999999999998764      35789999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT  251 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~  251 (289)
                      +.+|++++.+.       ...+..+.++|.++-.+||...|..++.++..+.|.|.     ....+|+..+.  |...+.
T Consensus       408 i~~YkealrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A-----eAhsNLasi~k--DsGni~  473 (966)
T KOG4626|consen  408 IMCYKEALRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA-----EAHSNLASIYK--DSGNIP  473 (966)
T ss_pred             HHHHHHHHhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH-----HHHhhHHHHhh--ccCCcH
Confidence            99999997442       13456788899999999999999999999999888875     33566666664  344555


Q ss_pred             HHHHhccccCCCchhHH
Q 022992          252 DVVKEFDSMTPLDPWKT  268 (289)
Q Consensus       252 ~al~~~~~~~~~d~~~~  268 (289)
                      +|+..|+..-.++|-+.
T Consensus       474 ~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  474 EAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHHHHHHHHHccCCCCc
Confidence            56666665555554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.77  E-value=1.6e-16  Score=137.30  Aligned_cols=215  Identities=21%  Similarity=0.282  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      ++..++..|..+|++|+.. ++++|.++|.+|.+++.+.+++..++.++.+.+.++.. +++++|+.+|++|+++|...|
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC
Confidence            3445556666666666555 77888888888888888899999999999999999998 599999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          147 VTTSANQCKQKVAQYAAEL-EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       147 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ++..++.++.++|.+|... |++++|+++|++++....... ........+.+++.++...|++.+|...|++.......
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998 999999999999986544443 23445566778888999999999999999987653322


Q ss_pred             CC--C-chHHHHHHHHHHHHcccCHHHHHHHHHhccccCC-C-chhHHHHHHHHHHhccccccc
Q 022992          226 FS--G-TREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTP-L-DPWKTTLLLRVKEKLKAKELE  284 (289)
Q Consensus       226 ~~--~-~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~-~-d~~~~~~~~~~~~~~~~~~~~  284 (289)
                      .+  . +-...++..++..+..||+...++++.+|....+ + ++-.-.++..|-+++..+-.+
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e  251 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVE  251 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CC
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHH
Confidence            11  1 1112456666666678999999999999887742 3 344446777777777665443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-17  Score=150.57  Aligned_cols=221  Identities=15%  Similarity=0.202  Sum_probs=175.6

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |+.-.|+..|++|              |++|+..+.|+.|+.+|++|+.....      -|.++-++|.+|.+. .++-|
T Consensus       232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn------~A~a~gNla~iYyeqG~ldlA  305 (966)
T KOG4626|consen  232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN------HAVAHGNLACIYYEQGLLDLA  305 (966)
T ss_pred             chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc------chhhccceEEEEeccccHHHH
Confidence            7878888888877              67888888888888888888876432      266777888888665 88999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      |++|++|+++-+.--+      ++.++|..+...|+..+|..+|.+|+.+.+.      -++++++||.++.++|.+++|
T Consensus       306 I~~Ykral~~~P~F~~------Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  306 IDTYKRALELQPNFPD------AYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             HHHHHHHHhcCCCchH------HHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHH
Confidence            9999999988765544      8999999999999999999999999998664      346899999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT  251 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~  251 (289)
                      ..+|..+++...       .....+.+++.++..+|.+.+|..+|++++.+.|.|.     ..+.+++..+..  .....
T Consensus       374 ~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA-----da~~NmGnt~ke--~g~v~  439 (966)
T KOG4626|consen  374 TRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA-----DALSNMGNTYKE--MGDVS  439 (966)
T ss_pred             HHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH-----HHHHhcchHHHH--hhhHH
Confidence            999999985431       2345678899999999999999999999999999986     346677776641  23455


Q ss_pred             HHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          252 DVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       252 ~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      .|++.|.....+.|.+..-...++-..+
T Consensus       440 ~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  440 AAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             HHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            6677777666677777766666554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.72  E-value=1.7e-14  Score=131.75  Aligned_cols=249  Identities=13%  Similarity=0.118  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRL  108 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~  108 (289)
                      ..+...+..|..+|+|++|...+..|+++..+ .| +....+..+..+|.+|+.. .+.+|+..|++|+.++...  .+.
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33445899999999999999999999999653 33 3445566777799999888 9999999999999999865  577


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  186 (289)
                      ...+.++.+||..|...|++++|..++++|++|++..  .+....+..+.+++.++..++++++|+.+|++++.+....+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            8899999999999999999999999999999999873  23455667899999999999999999999999986554322


Q ss_pred             ccc-cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHHcccC-----HHHHHHHHHhc
Q 022992          187 LLK-YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS---GTREYRLLSDIAASMDEED-----IAKFTDVVKEF  257 (289)
Q Consensus       187 ~~~-~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~---~~~e~~~l~~l~~a~~~~d-----~~~~~~al~~~  257 (289)
                      ... ..+...+.++|.+++.+|.+.+|.+.|+.++.+.+...   +...+..+.+|+.++....     ...|.++...+
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222 35677888999999999999999999999988776544   3455788889998884222     46788888877


Q ss_pred             cccCCCchhHHHHHHHHHHhccccc
Q 022992          258 DSMTPLDPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       258 ~~~~~~d~~~~~~~~~~~~~~~~~~  282 (289)
                      ...++-.|.-+..+..+...++.-|
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g  464 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQG  464 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcc
Confidence            6666666666666666665554433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.71  E-value=6.4e-16  Score=133.63  Aligned_cols=201  Identities=13%  Similarity=0.163  Sum_probs=169.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-------C--------------HHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-------S--------------SNEAISCLEQA   98 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-------~--------------~~~A~~~~~~A   98 (289)
                      |+.++..|.|++|+.|..+-+++.+++|+....++++.++|++|-..       .              ++.|+++|+.-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            46688899999999999999999999999999999999999999432       1              35688888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992           99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus        99 ~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +++..+.|+....++++-++|..|.-+|+++.||.+.+.=++|.++.|+......++.+||.+++-+|+++.|+++|...
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999998888889999999999999999999999988


Q ss_pred             H--HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHc
Q 022992          179 A--RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAASMD  243 (289)
Q Consensus       179 ~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~a~~  243 (289)
                      +  .+.+++..   -.+...+.+|..|....++..|+..+.+-+.|...+. +.+|.+..-.|+.++.
T Consensus       262 l~LAielg~r~---vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~  326 (639)
T KOG1130|consen  262 LNLAIELGNRT---VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN  326 (639)
T ss_pred             HHHHHHhcchh---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5  44444422   1222346678888878899999999999887766654 5677777778888773

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.70  E-value=4e-14  Score=129.27  Aligned_cols=241  Identities=16%  Similarity=0.163  Sum_probs=186.5

Q ss_pred             HhhHHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAH   81 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k-~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~a~   81 (289)
                      .++|+.+.+.|=..+. +++   -+...-..+....|.+|...+.+++|+..|++|+.+.... | +....+..+.++|.
T Consensus       215 ~e~A~~l~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  215 LEKAEPLCKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             HHHHHHHHHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            5678888888877764 433   2222223344468899999999999999999999999843 3 45677889999999


Q ss_pred             HHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-Cccc-hHHHHHH
Q 022992           82 CYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTT-SANQCKQ  156 (289)
Q Consensus        82 ~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~-~~~~~~~  156 (289)
                      +|-.. ++.+|..|+++|++|+.+.  -+....+..+.+++.++...+++++|+.+|+++++++... |... ..+.++.
T Consensus       292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~  371 (508)
T KOG1840|consen  292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA  371 (508)
T ss_pred             HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence            99666 9999999999999999873  4567889999999999999999999999999999998843 3333 6788999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-Cc-hHHH
Q 022992          157 KVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GT-REYR  233 (289)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~-~e~~  233 (289)
                      ++|.+|..+|+|++|.++|++++.+.... ....+.....+.+++..+...+.+..|...|.++..+...++ .+ .--.
T Consensus       372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~  451 (508)
T KOG1840|consen  372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY  451 (508)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence            99999999999999999999998554222 112344455566778778888888889999999877665555 22 2234


Q ss_pred             HHHHHHHHHc-ccCHH
Q 022992          234 LLSDIAASMD-EEDIA  248 (289)
Q Consensus       234 ~l~~l~~a~~-~~d~~  248 (289)
                      ...+|+.+|. .|+.+
T Consensus       452 ~~~nL~~~Y~~~g~~e  467 (508)
T KOG1840|consen  452 TYLNLAALYRAQGNYE  467 (508)
T ss_pred             HHHHHHHHHHHcccHH
Confidence            5677777774 66653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4e-14  Score=114.08  Aligned_cols=176  Identities=18%  Similarity=0.194  Sum_probs=146.6

Q ss_pred             cchHhhHHHHHHHHHHhhc---cCC-----C-------CC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992            2 GDQIARAEEFEKKAEKKLN---GWG-----L-------FG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK   65 (289)
Q Consensus         2 ~~~~~~a~~~~~~A~~~~k---~~~-----~-------~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~   65 (289)
                      |++++||.+|+.+|.+++|   .|.     |       .+ ++=+.|+..|..|+++|++. ++.+|++|.++++++|..
T Consensus        27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence            4579999999999999998   342     1       12 55567888888889999876 999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           66 LESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        66 ~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .|+..-+|..+..+|.+|...  ++++||.+|++|.+.|........+.+|+.+.+.+-..+++|.+||..|++....--
T Consensus       106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999765  999999999999999999888899999999999999999999999999999887543


Q ss_pred             ccC-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          144 NEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       144 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      .+. -..++...+...|.++.-..+.-.+...+++-
T Consensus       186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky  221 (288)
T KOG1586|consen  186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY  221 (288)
T ss_pred             cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence            332 12556678889999988766655544444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.61  E-value=9.9e-14  Score=111.90  Aligned_cols=142  Identities=19%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~  147 (289)
                      ...++.+...+|.-|.+. ++..|..-+++|+++.+..-      .++..+|.+|+.+|+.+.|-+.|++|+.+.+..| 
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G-  103 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNG-  103 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-
Confidence            344455555555555444 55555555555555544322      2555555555555555555555555555555444 


Q ss_pred             cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                           +++++.|.+++.+|+|++|...|++++....     -+.....+-|+|+|.+.+|+.+.|...|.++++.+|.++
T Consensus       104 -----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         104 -----DVLNNYGAFLCAQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             -----chhhhhhHHHHhCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence                 3455555555555555555555555542110     011122344555555555555555555555555555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.61  E-value=2.6e-14  Score=125.11  Aligned_cols=210  Identities=21%  Similarity=0.300  Sum_probs=162.6

Q ss_pred             cCCCCC-CCHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992           21 GWGLFG-SKYEDAADLFDKAA--------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus        21 ~~~~~~-~~~~~A~~~~~~A~--------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      |...|- ||+++|+++|..|.              ..+...|+.++|++||.+...+..+.      +..+.+++.+|..
T Consensus       497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------~evl~qianiye~  570 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------AEVLVQIANIYEL  570 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHH
Confidence            554554 99999999999984              34678999999999999998887643      7789999999988


Q ss_pred             C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Q 022992           86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE  164 (289)
Q Consensus        86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (289)
                      . ++..|++++.++..+.+..-      .+|.++|.+|.+.|+..+|..++-.+...|+.+      .++..+||..|..
T Consensus       571 led~aqaie~~~q~~slip~dp------~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ayyid  638 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDP------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAYYID  638 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCH------HHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHHHHh
Confidence            8 99999999999998876433      489999999999999999999998888887753      3678899999999


Q ss_pred             hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHHc
Q 022992          165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASMD  243 (289)
Q Consensus       165 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~~  243 (289)
                      ..-+++|+.+|+++.  .++++++++     .+.+..|..+.|++.+|   |+-|..+++.|+..-++ .++..+..-+.
T Consensus       639 tqf~ekai~y~ekaa--liqp~~~kw-----qlmiasc~rrsgnyqka---~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  639 TQFSEKAINYFEKAA--LIQPNQSKW-----QLMIASCFRRSGNYQKA---FDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             hHHHHHHHHHHHHHH--hcCccHHHH-----HHHHHHHHHhcccHHHH---HHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            999999999999996  233333333     34567888899999766   55556777888877776 44444443333


Q ss_pred             ccCHHHHHHHHHhcc
Q 022992          244 EEDIAKFTDVVKEFD  258 (289)
Q Consensus       244 ~~d~~~~~~al~~~~  258 (289)
                      ..|...+.+-+++..
T Consensus       709 l~d~key~~klek~e  723 (840)
T KOG2003|consen  709 LKDAKEYADKLEKAE  723 (840)
T ss_pred             chhHHHHHHHHHHHH
Confidence            444555555555533

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.60  E-value=1.5e-13  Score=131.51  Aligned_cols=217  Identities=11%  Similarity=0.040  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...|.++...|++++|+..|.+++++...      -..++..+|.++... ++++|+.+|++++++.+..      ..
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~  400 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD  400 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence            3445567788899999999999999988542      245778889988776 9999999999999885433      45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ++..+|.++...|++++|+.+|++++++.+..      ...+.++|.++..+|++++|+..|++++....       ...
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-------~~~  467 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-------EAP  467 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CCh
Confidence            89999999999999999999999999987643      24678999999999999999999999975432       123


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE--YRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLL  271 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e--~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~  271 (289)
                      ..+...|.++...|++++|...|++++++.|.......  ..++...+..+.  ....+.+|...+.....++|.+...+
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~--~~~~~~eA~~~~~kAl~l~p~~~~a~  545 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ--WKQDFIEAENLCEKALIIDPECDIAV  545 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            45677889999999999999999999998887542211  111222222222  12345555555555555666665555


Q ss_pred             HHHHHhc
Q 022992          272 LRVKEKL  278 (289)
Q Consensus       272 ~~~~~~~  278 (289)
                      ..+...+
T Consensus       546 ~~la~~~  552 (615)
T TIGR00990       546 ATMAQLL  552 (615)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.60  E-value=4.8e-14  Score=122.12  Aligned_cols=189  Identities=14%  Similarity=0.088  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN  127 (289)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~  127 (289)
                      ++.|+++|+.-+++.+++|+....+++|-++|+.|.-. +++.||.+.+.-+.+.+.-|+.....++..++|.+|.-+|+
T Consensus       171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence            46778888888889999999999999999999999877 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHc
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR--QSLNNNLLKYGVKGHLLNAGICQLC  205 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~  205 (289)
                      ++.|+++|.+++.+..+.|+....++....||..|..+.++++||.++++.+.  ..+.+   ..+....+..+|..+-.
T Consensus       251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D---riGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED---RIGELRACWSLGNAFNA  327 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHh
Confidence            99999999999999999999988999999999999999999999999999863  34444   33445566778888888


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHH
Q 022992          206 KGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAA  240 (289)
Q Consensus       206 ~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~  240 (289)
                      .|...+|....+..+++..... .++|-....+|.+
T Consensus       328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsd  363 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSD  363 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHH
Confidence            9998888777766655433333 3444443444443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.59  E-value=3.2e-13  Score=129.16  Aligned_cols=210  Identities=14%  Similarity=0.099  Sum_probs=156.7

Q ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992           26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (289)
Q Consensus        26 ~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~   90 (289)
                      .|++++|...|.++              +.++...|++++|+.+|.+++++...  +    ..++..+|.++... ++++
T Consensus       344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~  417 (615)
T TIGR00990       344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--D----PDIYYHRAQLHFIKGEFAQ  417 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHH
Confidence            39999999999988              45677899999999999999887322  1    45788889999777 9999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  170 (289)
                      |+.+|++++++.+...      ..+.++|.++..+|++++|+..|++++..++..      ..++..+|.++..+|++++
T Consensus       418 A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       418 AGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHH
Confidence            9999999999876433      468899999999999999999999999987653      3578999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHH-
Q 022992          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIA-  248 (289)
Q Consensus       171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~-  248 (289)
                      |++.|++++................+..++.++...|++.+|...+++++.++|...     .....++..+ ..|+.+ 
T Consensus       486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~-----~a~~~la~~~~~~g~~~e  560 (615)
T TIGR00990       486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD-----IAVATMAQLLLQQGDVDE  560 (615)
T ss_pred             HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHccCHHH
Confidence            999999998554322111111112222333444456999999999999998876542     2345566655 366643 


Q ss_pred             ---HHHHHHHhcc
Q 022992          249 ---KFTDVVKEFD  258 (289)
Q Consensus       249 ---~~~~al~~~~  258 (289)
                         .++++++..+
T Consensus       561 Ai~~~e~A~~l~~  573 (615)
T TIGR00990       561 ALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHHHHhc
Confidence               3444444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=3.7e-13  Score=122.72  Aligned_cols=198  Identities=17%  Similarity=0.228  Sum_probs=151.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |+||-.+++.+.|+.||.+|+.+-...      +=+|..+|.=+... ++++|..||++|+.+.++.-+      +|..+
T Consensus       428 GNcfSLQkdh~~Aik~f~RAiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn------AwYGl  495 (638)
T KOG1126|consen  428 GNCFSLQKDHDTAIKCFKRAIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN------AWYGL  495 (638)
T ss_pred             cchhhhhhHHHHHHHHHHHhhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH------HHHhh
Confidence            677888888899999999988774322      33555566544444 889999999999888877766      99999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.+|.++++++.|.-+|++|+++-+..-      .++.-+|.++.++|+.++|+.+|++|+.....++.       ..++
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~ns------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l-------~~~~  562 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNS------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL-------CKYH  562 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccch------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch-------hHHH
Confidence            9999999999999999999999976542      46788999999999999999999999855433322       1244


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHH
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT  269 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~  269 (289)
                      -+.+....+++++|...+++..++.|+     |......++..+.  ......-|+..|.-...+||-=.+
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~k--~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIYK--RLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHH--HHccchHHHHhhHHHhcCCCccch
Confidence            566777889999999999998777665     3444555566554  134455678888888888887766

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=3.8e-11  Score=99.35  Aligned_cols=174  Identities=16%  Similarity=0.131  Sum_probs=140.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      ++.......+...+.++...|++++|...+.+++.....      ....+..+|.++... ++++|++++++++...+..
T Consensus        25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN   98 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            455666778888899999999999999999999876422      245777788888776 9999999999999986543


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      .      ..+.++|.++...|++++|+.+|++++....    .......+..+|.++...|++++|...|.+++..... 
T Consensus        99 ~------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-  167 (234)
T TIGR02521        99 G------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-  167 (234)
T ss_pred             H------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence            3      4788999999999999999999999997422    1223356788999999999999999999999754221 


Q ss_pred             cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                            ....+..++.++...|++++|...++++....
T Consensus       168 ------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  199 (234)
T TIGR02521       168 ------RPESLLELAELYYLRGQYKDARAYLERYQQTY  199 (234)
T ss_pred             ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                  12345677888999999999999999998763

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.43  E-value=6.7e-11  Score=106.77  Aligned_cols=204  Identities=18%  Similarity=0.147  Sum_probs=125.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      +.+|...|++++|..+|.++.+..     + ....++..++.++... ++++|++++++++...+.... ...+..+..+
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~l  186 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEG-----D-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR-VEIAHFYCEL  186 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCC-----c-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence            334455566666666665555431     1 1233455566666554 777777777776655432221 2345567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.++...|++++|+.+|+++++..+..      ..++..+|.++...|++++|++.|+++.....      ......+..
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~  254 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDP------EYLSEVLPK  254 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh------hhHHHHHHH
Confidence            888888899999999999988875432      24677888899999999999999988864321      112233456


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKTTLL  271 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~~~~~~  271 (289)
                      ++.++...|+++.|...++++.+..|..      .....++..+ ..|+.+.   |+..+......+|......
T Consensus       255 l~~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~la~~~~~~g~~~~---A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        255 LMECYQALGDEAEGLEFLRRALEEYPGA------DLLLALAQLLEEQEGPEA---AQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHhCCHHH---HHHHHHHHHHhCcCHHHHH
Confidence            6777888899999999998887765542      1223445544 3555544   3343333333345555444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.43  E-value=9.8e-11  Score=105.71  Aligned_cols=197  Identities=17%  Similarity=0.157  Sum_probs=120.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      +.++...|++++|...+.++...-  ..........+..+|.+|... ++++|+.+|.++++..+      ....++..+
T Consensus        76 a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l  147 (389)
T PRK11788         76 GNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD------FAEGALQQL  147 (389)
T ss_pred             HHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHH
Confidence            777777788888877777666521  111222345667777777655 77788888777765421      123466777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      +.++...|++++|++.|++++...+..... .....+..+|.++...|++++|+.+|++++.....       ....+..
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~  219 (389)
T PRK11788        148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-------CVRASIL  219 (389)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-------CHHHHHH
Confidence            777777788888888888777776554322 23345667777777778888888887777643211       1223455


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKE  256 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~  256 (289)
                      ++.++...|++.+|...|+++....|...    ......++.++. .|+.+.....++.
T Consensus       220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        220 LGDLALAQGDYAAAIEALERVEEQDPEYL----SEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHChhhH----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66777777777778777777766544321    122344555543 5555444444444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.1e-11  Score=107.26  Aligned_cols=159  Identities=17%  Similarity=0.207  Sum_probs=133.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |+.|...++.++|+.+|.+|+.+-++.      ..++.-+|.=|.+. +...|+++|++|+++.+..-.      +|..+
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------AWYGL  404 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------AWYGL  404 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------HHhhh
Confidence            345667788899999999999885432      55777889999877 999999999999999887654      99999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |+.|.-++-+.=|+-+|++|..+-+.+.      ..+.-+|.+|.++++.++|+++|.+++.-  ++     .....+..
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai~~--~d-----te~~~l~~  471 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAILL--GD-----TEGSALVR  471 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHHhc--cc-----cchHHHHH
Confidence            9999999999999999999999865432      57889999999999999999999999722  21     12356788


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          199 AGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      +|..|-..+|..+|..+|+++++..
T Consensus       472 LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999997743

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.42  E-value=2e-11  Score=98.71  Aligned_cols=173  Identities=17%  Similarity=0.140  Sum_probs=146.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      .+-.+|.+..-+.|.-|...|++..|..-+++|++.-++.      ..++.-++.+|... +.+.|-+.|++|+.+-+++
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            4667899999999999999999999999999999985432      45777788899777 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      |+      +++|.|..+..+|+|++|..+|++|++- +.-+   ..+.++.++|.|..+.|+++.|.++|++++......
T Consensus       103 Gd------VLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~---~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~  172 (250)
T COG3063         103 GD------VLNNYGAFLCAQGRPEEAMQQFERALAD-PAYG---EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF  172 (250)
T ss_pred             cc------hhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCC---CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence            98      9999999999999999999999999874 3333   345789999999999999999999999998654333


Q ss_pred             cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      +       .........+...||+..|+-.++++..-
T Consensus       173 ~-------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         173 P-------PALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             C-------hHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            2       12345566788899999999999998763

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.39  E-value=4.3e-11  Score=122.00  Aligned_cols=187  Identities=9%  Similarity=0.030  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHH--------HHHHHHHHHHHHc
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHE--------AAQAYVDAAHCYK   84 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------aa~~~~~~a~~~~   84 (289)
                      +++++|...|.++              |.+|...|++++|+.+|.++++..........        ........|.++.
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            8999999999988              56788899999999999999988654332110        0112234466665


Q ss_pred             cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hH-----------
Q 022992           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SA-----------  151 (289)
Q Consensus        85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~-----------  151 (289)
                      .. ++++|+.+|++++.+.+..      +.++..+|.++...|++++|+.+|++++++.+...... ..           
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence            55 9999999999999986532      34788899999999999999999999998866532110 00           


Q ss_pred             ------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC
Q 022992          152 ------------------------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG  207 (289)
Q Consensus       152 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  207 (289)
                                              ...+..+|.++...|++++|++.|++++...+.+       ...++.++.++...|
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-------~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-------VWLTYRLAQDLRQAG  509 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcC
Confidence                                    1223456777888999999999999998543222       234567888999999


Q ss_pred             CHHHHHHHHHHHhhcCCCC
Q 022992          208 DVVAITNALERYQDMDPTF  226 (289)
Q Consensus       208 d~~~A~~~~~~~~~~~~~~  226 (289)
                      ++.+|...+++++...|..
T Consensus       510 ~~~~A~~~l~~al~~~P~~  528 (1157)
T PRK11447        510 QRSQADALMRRLAQQKPND  528 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCCC
Confidence            9999999999988877654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=2.1e-10  Score=94.92  Aligned_cols=173  Identities=15%  Similarity=0.108  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      +++++|.+.+.++              +.++...|++++|...|.++++.....      ...+.++|.++... ++++|
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~g~~~~A  118 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------GDVLNNYGTFLCQQGKYEQA  118 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcccHHHH
Confidence            6777777777765              567888999999999999999875432      24677788888766 99999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.++++++....    .......+.++|.++...|++++|+.+|.+++...+..      ...+..+|.++...|++++|
T Consensus       119 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       119 MQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHH
Confidence            999999987422    22345578889999999999999999999999886542      24678999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      +.+++++....   +    .....+...+.++...|+...|....+.....
T Consensus       189 ~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQTY---N----QTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhC---C----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999997541   1    11223344567777889999998887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=2.5e-10  Score=93.05  Aligned_cols=181  Identities=18%  Similarity=0.168  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      |+..|++|+-+.+....|.++.++|++|..+|.+.|.+..++-++..+|.+....+|++|+..|++++.++...++...+
T Consensus        70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma  149 (308)
T KOG1585|consen   70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA  149 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            33444444556667788899999999999999999999999999999999999889999999999999999999998999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      -..+.+.+.++.....+++|...+.+-..+.............+.....+|....+|..|.++|+......   ......
T Consensus       150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip---~f~~se  226 (308)
T KOG1585|consen  150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP---AFLKSE  226 (308)
T ss_pred             HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc---cccChH
Confidence            99999999999999999999999988877766554444433334444455666679999999998864221   111111


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHH
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNAL  216 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~  216 (289)
                      ....+-++ +.-...||.+...+.+
T Consensus       227 d~r~lenL-L~ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  227 DSRSLENL-LTAYDEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHH-HHHhccCCHHHHHHHH
Confidence            11122232 2334578887766554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.38  E-value=6.5e-11  Score=117.24  Aligned_cols=175  Identities=14%  Similarity=0.065  Sum_probs=132.8

Q ss_pred             CCHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc-CCHHHHH
Q 022992           27 SKYEDAADLFDKAA-------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TSSNEAI   92 (289)
Q Consensus        27 ~~~~~A~~~~~~A~-------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~-~~~~~A~   92 (289)
                      |++++|+..|.++.             .++...|++++|..+|.+++......      ...+..++..... .++++|+
T Consensus       523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHhCCCHHHHH
Confidence            67777777776553             34556777777777777777652111      1122223333322 4999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus        93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      .+|++|+.+.+.       +..+.++|.++...|++++|+.+|++++.+.+...      .++.++|.++...|++++|+
T Consensus       597 ~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        597 NDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS------NYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHH
Confidence            999999988662       35789999999999999999999999999876542      57899999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ..|++++...+.       ....+.++|.++...|+++.|...|++++++.|...
T Consensus       664 ~~l~~AL~l~P~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        664 EMLERAHKGLPD-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            999999854322       234678899999999999999999999999888764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.37  E-value=5.5e-10  Score=107.41  Aligned_cols=181  Identities=14%  Similarity=0.042  Sum_probs=123.7

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH-------------HHhcCCHHHHHHHHHH-
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC-------------HLKLESKHEAAQAYVD-   78 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~-------------~~~~~~~~~aa~~~~~-   78 (289)
                      |++++|+..|.++              +.++...|++++|...+.++...             +...|+...+...+.. 
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6777777777666              34566677777777776655432             1223343333332222 


Q ss_pred             --------------HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 022992           79 --------------AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ----TIVFFEKAA  139 (289)
Q Consensus        79 --------------~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~----A~~~y~~A~  139 (289)
                                    ++.++... ++++|+..+++++...+.      -+.++..+|.++...|++++    |+.+|++++
T Consensus       204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence                          23344333 677777777777765432      24577788999998899885    799999999


Q ss_pred             HHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                      ++.+..      ..++..+|.++...|++++|+..+++++.....       ....+..++.++...|++++|...|++.
T Consensus       278 ~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-------~~~a~~~La~~l~~~G~~~eA~~~l~~a  344 (656)
T PRK15174        278 QFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-------LPYVRAMYARALRQVGQYTAASDEFVQL  344 (656)
T ss_pred             hhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            886542      357888999999999999999999998754322       1234556788888899999999999988


Q ss_pred             hhcCCCC
Q 022992          220 QDMDPTF  226 (289)
Q Consensus       220 ~~~~~~~  226 (289)
                      ....|..
T Consensus       345 l~~~P~~  351 (656)
T PRK15174        345 AREKGVT  351 (656)
T ss_pred             HHhCccc
Confidence            8776653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.37  E-value=1.9e-10  Score=110.64  Aligned_cols=215  Identities=10%  Similarity=0.002  Sum_probs=141.1

Q ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992           26 GSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (289)
Q Consensus        26 ~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~   90 (289)
                      .|++++|...|.++              +.++...|++++|+..|.+++.+....      ...+..++.++... ++++
T Consensus        89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~------~~a~~~la~~l~~~g~~~e  162 (656)
T PRK15174         89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN------SQIFALHLRTLVLMDKELQ  162 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCChHH
Confidence            48889999888887              567888999999999999998863211      22334444444443 5555


Q ss_pred             HHHHHHHHHHH-------------HHhcCCHHHHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           91 AISCLEQAVNM-------------FCDIGRLSMAAR---------------YYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus        91 A~~~~~~A~~~-------------~~~~g~~~~~a~---------------~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      |+..+++++..             +...|+...+..               ....++.++...|++++|+..|++++++.
T Consensus       163 A~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~  242 (656)
T PRK15174        163 AISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG  242 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            55555444321             122233322222               22345677778899999999999999875


Q ss_pred             hccCccchHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          143 QNEEVTTSANQCKQKVAQYAAELEQYHK----SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      +..      ..++..+|.++...|++++    |+..|++++...+.       ....+...|.++...|++++|...+++
T Consensus       243 p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-------~~~a~~~lg~~l~~~g~~~eA~~~l~~  309 (656)
T PRK15174        243 LDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-------NVRIVTLYADALIRTGQNEKAIPLLQQ  309 (656)
T ss_pred             CCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            432      3678889999999999986    79999999754321       224567788889999999999999999


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhH
Q 022992          219 YQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       219 ~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~  267 (289)
                      ++.+.|...   .  ....++.++. .|+.   .+|+..|..+...+|..
T Consensus       310 al~l~P~~~---~--a~~~La~~l~~~G~~---~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        310 SLATHPDLP---Y--VRAMYARALRQVGQY---TAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHhCCCCH---H--HHHHHHHHHHHCCCH---HHHHHHHHHHHHhCccc
Confidence            998877643   2  2334555443 4544   34444444444444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.37  E-value=1.6e-10  Score=114.08  Aligned_cols=195  Identities=14%  Similarity=0.085  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH----------
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC----------   62 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~----------   62 (289)
                      .+..++..|...++.     |+|++|+..+.++              |.+|...|++++|...+.++.+.          
T Consensus        21 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~   95 (899)
T TIGR02917        21 SPESLIEAAKSYLQK-----NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL   95 (899)
T ss_pred             CHHHHHHHHHHHHHc-----CChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHH
Confidence            455566666666663     5777777777665              56677788888888888877653          


Q ss_pred             ----HHhcC---------------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           63 ----HLKLE---------------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        63 ----~~~~~---------------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                          +...|               .....+..+..+|.++... ++++|+.+|+++++..+..      ...+..+|.++
T Consensus        96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~  169 (899)
T TIGR02917        96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLA  169 (899)
T ss_pred             HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHH
Confidence                11222               2233445566677777665 8888999888888765533      23667777777


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992          123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC  202 (289)
Q Consensus       123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  202 (289)
                      ...|++++|+..+++++...+..      ...+..+|.++...|++++|+..|++++...+.       ....+...+.+
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~~~~~  236 (899)
T TIGR02917       170 LAENRFDEARALIDEVLTADPGN------VDALLLKGDLLLSLGNIELALAAYRKAIALRPN-------NPAVLLALATI  236 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHH
Confidence            77788888888888777654322      245666777777777888888777777633211       11234445566


Q ss_pred             HHccCCHHHHHHHHHHHhhcCCC
Q 022992          203 QLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       203 ~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      +...|+++.|...++......|.
T Consensus       237 ~~~~g~~~~A~~~~~~~~~~~~~  259 (899)
T TIGR02917       237 LIEAGEFEEAEKHADALLKKAPN  259 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            66667777777666666655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.33  E-value=3e-10  Score=95.55  Aligned_cols=185  Identities=16%  Similarity=0.076  Sum_probs=141.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      |.++..++.+...|..+...|++++|+..|.+++..+...   .....++..+|.++... ++++|+..|+++++.++..
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~  103 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH  103 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            3566777778888888999999999999999998876432   22345678889998777 9999999999999998865


Q ss_pred             CCHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhc
Q 022992          106 GRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELE  166 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~--------g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g  166 (289)
                      ..   ...++..+|.++...        |++++|+..|++++..++........           ......+|.++...|
T Consensus       104 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       104 PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            54   344677888888765        78999999999999988765432111           011246788999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      ++.+|+..|++++......+    .....++.+|.++...|++.+|...++....
T Consensus       181 ~~~~A~~~~~~al~~~p~~~----~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTP----ATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999985543221    1345678899999999999999998877543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.31  E-value=1.2e-10  Score=115.42  Aligned_cols=198  Identities=12%  Similarity=0.021  Sum_probs=134.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL  121 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~  121 (289)
                      +...|++++|+..|.++.....  .+     ..+..+|.++... ++++|+.+|++++...+..      ...+..++..
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~p--~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------~~l~~~La~~  585 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHDM--SN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------NALYWWLHAQ  585 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccCC--Cc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------HHHHHHHHHH
Confidence            3456677777777666533211  01     1234455555444 7788888888887653221      2233345555


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992          122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI  201 (289)
Q Consensus       122 ~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  201 (289)
                      ....|++++|+.+|++|+++.+.       ...+.++|.++.++|++++|+..|++++...+++       ...+.++|.
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-------~~a~~nLG~  651 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-------SNYQAALGY  651 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHH
Confidence            55669999999999999988652       3578999999999999999999999998554322       245678888


Q ss_pred             HHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992          202 CQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       202 ~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~  275 (289)
                      ++...|++++|...|++++++.|...     .+...++.++. .|+.+   +|+..|+..-.++|.+..+-..+.
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~nLA~al~~lGd~~---eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQLAYVNQRLDDMA---ATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCCCchhhhhhh
Confidence            88999999999999999999887654     44666777664 66644   344444555555565554444333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-10  Score=104.54  Aligned_cols=180  Identities=17%  Similarity=0.178  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      +++++|-.+|.+|              |..|...|.-++|..+|..|..++....-|      +.-+|.=|... .+.-|
T Consensus       326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHHHHHHHHhccHHHH
Confidence            6666677766666              445666677777777777777776654433      12344445444 77788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hHHHHHHHHHHHHHHhcCHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~  170 (289)
                      -.+|.+|+.+.+..-      -.++.+|.+....+.+.+|..+|+.++...+...... ...-.+.+||.++.+++.|++
T Consensus       400 e~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             HHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            888888888876433      3788999998877999999999999997776654432 233478999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |+.+|++++.....       ....+..+|.||..+|.++.|+..|.+++.+.|-
T Consensus       474 AI~~~q~aL~l~~k-------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  474 AIDYYQKALLLSPK-------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHHHHHHHHcCCC-------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            99999999854322       2345677899999999999999999999987664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.28  E-value=8e-10  Score=112.84  Aligned_cols=200  Identities=12%  Similarity=0.098  Sum_probs=143.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH--------
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM--------  110 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~--------  110 (289)
                      |.++...|++++|+..|.+++......      ..++..+|.+|... ++++|+.+|+++++..+.......        
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            667788999999999999999985432      45788899999777 999999999999998876543211        


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      ....+...|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|++.|++++.....+.....
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            11234456888888899999999999999986543      257889999999999999999999999754322211000


Q ss_pred             ch-----------------------------------hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992          191 GV-----------------------------------KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL  235 (289)
Q Consensus       191 ~~-----------------------------------~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l  235 (289)
                      ..                                   ...+...+.++...|++.+|...|++++.+.|...     .+.
T Consensus       424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~-----~~~  498 (1157)
T PRK11447        424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-----WLT  498 (1157)
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHH
Confidence            00                                   00112234556678999999999999999877643     234


Q ss_pred             HHHHHHH-cccCHHHHHHHHHh
Q 022992          236 SDIAASM-DEEDIAKFTDVVKE  256 (289)
Q Consensus       236 ~~l~~a~-~~~d~~~~~~al~~  256 (289)
                      ..++..+ ..|+.+.....++.
T Consensus       499 ~~LA~~~~~~G~~~~A~~~l~~  520 (1157)
T PRK11447        499 YRLAQDLRQAGQRSQADALMRR  520 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4555555 36665444443333

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=3.3e-10  Score=107.05  Aligned_cols=152  Identities=11%  Similarity=-0.096  Sum_probs=103.2

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~  125 (289)
                      +++++|...+.+++++....      +.++..+|.++... ++++|+.+|++|+++.+..      +.++..+|.++...
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~  385 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNN------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA  385 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence            34677788888777763321      34566677777555 8888888888888876543      23677888888888


Q ss_pred             CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (289)
Q Consensus       126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  205 (289)
                      |++++|+.+|++|+++.+...      .....++.++...|++++|+..+++++....  +    .....+..+|.++..
T Consensus       386 G~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~--p----~~~~~~~~la~~l~~  453 (553)
T PRK12370        386 GQLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGDELRSQHL--Q----DNPILLSMQVMFLSL  453 (553)
T ss_pred             CCHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc--c----cCHHHHHHHHHHHHh
Confidence            888888888888888765432      1223344456667888888888888763211  0    112234567778878


Q ss_pred             cCCHHHHHHHHHHHhhc
Q 022992          206 KGDVVAITNALERYQDM  222 (289)
Q Consensus       206 ~gd~~~A~~~~~~~~~~  222 (289)
                      .|++++|+..+.+....
T Consensus       454 ~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        454 KGKHELARKLTKEISTQ  470 (553)
T ss_pred             CCCHHHHHHHHHHhhhc
Confidence            88888888888775443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.27  E-value=2.3e-09  Score=105.85  Aligned_cols=98  Identities=11%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      +..++.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+..|++++.....       ...
T Consensus       570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~  636 (899)
T TIGR02917       570 ALALAQYYLGKGQLKKALAILNEAADAAPDS------PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-------SAL  636 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ChH
Confidence            3445555555556666666555555433221      235566666666666666666666666532211       112


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .+..++.++...|++++|...|+++....|.
T Consensus       637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  667 (899)
T TIGR02917       637 ALLLLADAYAVMKNYAKAITSLKRALELKPD  667 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3344555666666666666666666655544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=7.4e-11  Score=107.89  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=145.2

Q ss_pred             CCC--CCHHHHHHHHHHHHHH-------HH-------HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-
Q 022992           24 LFG--SKYEDAADLFDKAANS-------FK-------LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-   86 (289)
Q Consensus        24 ~~~--~~~~~A~~~~~~A~~~-------~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-   86 (289)
                      .|+  ++++.|+.+|.+|..+       |.       ....+|.|..+|.+|+.+..+.      =.+|..+|.+|.+. 
T Consensus       430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqe  503 (638)
T KOG1126|consen  430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQE  503 (638)
T ss_pred             hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccc
Confidence            345  8999999999999542       33       4456777888888777764332      45889999999888 


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      .++.|.-+|++|+++-+.+--      .+.-+|.++.+.|+.++|+.+|++|+.+.+.+.      -+...-|.++..++
T Consensus       504 k~e~Ae~~fqkA~~INP~nsv------i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~  571 (638)
T KOG1126|consen  504 KLEFAEFHFQKAVEINPSNSV------ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLG  571 (638)
T ss_pred             hhhHHHHHHHhhhcCCccchh------HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhc
Confidence            999999999999999887664      778899999999999999999999999877643      46788899999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      +|++|+..+++.....++       ....++-+|.+|...|....|...|--+..++|.=
T Consensus       572 ~~~eal~~LEeLk~~vP~-------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  572 RYVEALQELEELKELVPQ-------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             chHHHHHHHHHHHHhCcc-------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            999999999998644322       23456678999999999999999999888888763

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.26  E-value=4.1e-09  Score=100.21  Aligned_cols=217  Identities=16%  Similarity=0.166  Sum_probs=158.5

Q ss_pred             chHhhHHHHHHHHHHhhc----------cCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHH
Q 022992            3 DQIARAEEFEKKAEKKLN----------GWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGAT   55 (289)
Q Consensus         3 ~~~~~a~~~~~~A~~~~k----------~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~   55 (289)
                      +..+.|..++..|-+.-+          +.++|++||..+++++..|                 |++|..+|+|++|..+
T Consensus       250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y  329 (1018)
T KOG2002|consen  250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY  329 (1018)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            456788889998877654          2357899999999988777                 6778899999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------------------------
Q 022992           56 YVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------------------------  107 (289)
Q Consensus        56 ~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---------------------------  107 (289)
                      |.+++.+....     -.-.+..+|..|... ++..|+.||++.+..++.+-.                           
T Consensus       330 Y~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~  404 (1018)
T KOG2002|consen  330 YMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG  404 (1018)
T ss_pred             HHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence            99998775322     122344555555444 666666666665544332110                           


Q ss_pred             -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          108 -----LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       108 -----~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                           ...-..+|..+|.++.. +++-.++..|..|++++...+.+ .-.++++++|..+..+|.+++|...|.++....
T Consensus       405 K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~  482 (1018)
T KOG2002|consen  405 KVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKL  482 (1018)
T ss_pred             HHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence                 01224478889999988 88888899999999999888777 556899999999999999999999999997542


Q ss_pred             h--hcccc--ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          183 L--NNNLL--KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       183 ~--~~~~~--~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .  .+.-.  ..+ -...++++.|.-+.+++..|.+.|...+..+|+|-
T Consensus       483 ~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI  530 (1018)
T KOG2002|consen  483 LEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI  530 (1018)
T ss_pred             hhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence            1  11111  011 11246788888888899999999999888888874

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=6.5e-10  Score=96.85  Aligned_cols=175  Identities=9%  Similarity=-0.057  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      .-...+..-|.+|...|++++|...|.+++++..+.      ..++..+|.++... ++++|+..|++|+++.+...   
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---  132 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---  132 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---
Confidence            334567777889999999999999999999875432      56888999999777 99999999999999876543   


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh------
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL------  183 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------  183 (289)
                         .++.++|.++...|++++|+..|++++.+.+....    ...+   ..+....+++++|+..|++......      
T Consensus       133 ---~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~----~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~  202 (296)
T PRK11189        133 ---YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY----RALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGW  202 (296)
T ss_pred             ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHH
Confidence               37899999999999999999999999988765421    0011   1233446678888888866542110      


Q ss_pred             -------hcc-----------------ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          184 -------NNN-----------------LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       184 -------~~~-----------------~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                             +..                 .........++.+|.++...|++++|...|++++++.+
T Consensus       203 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        203 NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                   000                 00000113456667777777888888888877777653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.5e-09  Score=94.38  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=130.6

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      ++.++|+.+|..|              |.-|...++...|+++|.+|+++-+.-      =++|..+|+.|.-. .+.=|
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHHhhhhHHHHHhcchHHH
Confidence            4556777777776              445888999999999999999996531      35788999999777 78889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +-+|++|+.+-+...      +.|..+|.||.++++.++|+.+|.+|+..-...      ..++..||.+|.+++++++|
T Consensus       418 LyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  418 LYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHHHH
Confidence            999999999866443      499999999999999999999999999874433      36899999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~  220 (289)
                      ..+|++-+....-.+...-.+..+..-+..-....+|++.|.......+
T Consensus       486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            9999998753311111011111111113333456788888766555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=2.9e-09  Score=100.65  Aligned_cols=199  Identities=10%  Similarity=0.004  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHHHHHH-HH-HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHH
Q 022992           27 SKYEDAADLFDKAANS-FK-LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISC   94 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~-~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~   94 (289)
                      ++++ |..+|-++... ++ ..+++++|..+|.+|+++....      +.++..+|.+|...          ++++|+.+
T Consensus       254 ~~~d-a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~  326 (553)
T PRK12370        254 NSID-STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEH  326 (553)
T ss_pred             CChH-HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence            3444 44455555322 22 2346789999999998874422      34555666654311          47899999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992           95 LEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (289)
Q Consensus        95 ~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  174 (289)
                      +++|+++.+...      .++..+|.++...|++++|+.+|++|+++.+..      ..++..+|.++...|++++|+..
T Consensus       327 ~~~Al~ldP~~~------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        327 AIKATELDHNNP------QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             HHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999966543      478889999999999999999999999986653      25788999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-cccCHHHHHH
Q 022992          175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD-PTFSGTREYRLLSDIAASM-DEEDIAKFTD  252 (289)
Q Consensus       175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~-~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~  252 (289)
                      |++++...+..+       ......+.+++..|++++|...+++++... |..   ..  ....++.++ ..|+.+....
T Consensus       395 ~~~Al~l~P~~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~---~~--~~~~la~~l~~~G~~~eA~~  462 (553)
T PRK12370        395 INECLKLDPTRA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN---PI--LLSMQVMFLSLKGKHELARK  462 (553)
T ss_pred             HHHHHhcCCCCh-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC---HH--HHHHHHHHHHhCCCHHHHHH
Confidence            999985432211       111223334556899999999999987654 332   22  233345544 4677666555


Q ss_pred             HHHh
Q 022992          253 VVKE  256 (289)
Q Consensus       253 al~~  256 (289)
                      .+..
T Consensus       463 ~~~~  466 (553)
T PRK12370        463 LTKE  466 (553)
T ss_pred             HHHH
Confidence            5544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.3e-08  Score=91.32  Aligned_cols=228  Identities=16%  Similarity=0.254  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS  109 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~  109 (289)
                      .+.-...+|+......+|..|+.+|.+++++....++.       ++.+.+|... .+.+.+..+..|++..... -+.-
T Consensus       223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~-------~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k  295 (539)
T KOG0548|consen  223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYL-------NNIAAVYLERGKYAECIELCEKAVEVGRELRADYK  295 (539)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHH-------HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence            44456677888888889999999999999997544443       4444444333 4444444444444443322 1223


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--------------------chHHHHHHHHHHHHHHhcCHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--------------------TSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      ..+.++..+|..+...++++.|+.+|++++.-++.....                    ...+.-...-|.-+...|+|.
T Consensus       296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence            478888889999999999999999999998877641100                    111222344477788899999


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHH
Q 022992          170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAK  249 (289)
Q Consensus       170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~  249 (289)
                      .|+..|.+++...+.+       ...|.|.+.||+..|.+..|.+..+...+++|.|...   . ++. +.++  .-...
T Consensus       376 ~Av~~YteAIkr~P~D-------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg---y-~RK-g~al--~~mk~  441 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPED-------ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA---Y-LRK-GAAL--RAMKE  441 (539)
T ss_pred             HHHHHHHHHHhcCCch-------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH---H-HHH-HHHH--HHHHH
Confidence            9999999988553222       3357888999999999999999999888888877521   1 111 1111  11355


Q ss_pred             HHHHHHhccccCCCchhHHHHHHHHHHhccc
Q 022992          250 FTDVVKEFDSMTPLDPWKTTLLLRVKEKLKA  280 (289)
Q Consensus       250 ~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~  280 (289)
                      +..++..|..-..+||.+...+..+++++.+
T Consensus       442 ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  442 YDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            6777777777777889999999999998875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=1.1e-07  Score=95.11  Aligned_cols=223  Identities=11%  Similarity=0.048  Sum_probs=162.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMAARYYK  116 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~--~~~a~~l~  116 (289)
                      +.++...|++++|...+.++....+..|+....+.++..+|.++... ++++|..++++++++....+..  ...+..+.
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            45567799999999999999999999999888888888989988666 9999999999999998876632  22344566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc-ccc-----
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL-LKY-----  190 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~-----  190 (289)
                      .+|.++...|++++|..++.+++.+.+..+. .....++..++.++...|++++|...++++......... ...     
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~  656 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD  656 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence            7888888889999999999999999876553 334567788999999999999999998887532111000 000     


Q ss_pred             ----------------------------c----hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHH
Q 022992          191 ----------------------------G----VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSD  237 (289)
Q Consensus       191 ----------------------------~----~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~  237 (289)
                                                  .    .......++.++...|++.+|...+++++......+.. .....+..
T Consensus       657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~  736 (903)
T PRK04841        657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL  736 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence                                        0    00012345667778899999999999988765554422 23444555


Q ss_pred             HHHHH-cccCH----HHHHHHHHhccccCCC
Q 022992          238 IAASM-DEEDI----AKFTDVVKEFDSMTPL  263 (289)
Q Consensus       238 l~~a~-~~~d~----~~~~~al~~~~~~~~~  263 (289)
                      ++.++ ..|+.    ..+++|+..+...+..
T Consensus       737 la~a~~~~G~~~~A~~~L~~Al~la~~~g~~  767 (903)
T PRK04841        737 LNQLYWQQGRKSEAQRVLLEALKLANRTGFI  767 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence            55555 47774    5677777777665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=7.7e-09  Score=86.90  Aligned_cols=164  Identities=16%  Similarity=0.175  Sum_probs=122.9

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLE   67 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~   67 (289)
                      ...+..++..+...++.     ++|++|...|.++                 |.+|...|++++|+..|.++++.+....
T Consensus        30 ~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        30 EWPAEELYEEAKEALDS-----GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             cCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            44566677777766652     4666666666544                 5678889999999999999999876433


Q ss_pred             CHHHHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHhcCC
Q 022992           68 SKHEAAQAYVDAAHCYKK---------TSSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHN  127 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~---------~~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~~~~~~g~  127 (289)
                      .   ...++..+|.++..         .++++|++.+++++..++.......+           ......+|.++...|+
T Consensus       105 ~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~  181 (235)
T TIGR03302       105 D---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA  181 (235)
T ss_pred             c---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            2   23356666777643         26889999999999888876543211           1223477889999999


Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      +.+|+..|+++++.++..   .....++..+|.++..+|++++|+.+++...
T Consensus       182 ~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       182 YVAAINRFETVVENYPDT---PATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             hHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999988764   2345788999999999999999999988775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.11  E-value=3.9e-08  Score=83.47  Aligned_cols=217  Identities=17%  Similarity=0.156  Sum_probs=105.5

Q ss_pred             CCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHccC-
Q 022992           23 GLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKKT-   86 (289)
Q Consensus        23 ~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~~~-   86 (289)
                      ++.+...++|++.|-..              |++|+..|..|.|+..++...+--   +- ...-..++..+|.-|... 
T Consensus        45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhh
Confidence            45567778899888876              688999999998888776544321   10 112233444444444433 


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      -++.|...|....+.      +.-+-.++..+-.+|+...+.++||+.-++-+.+-.+ .....++..+..++.-+....
T Consensus       122 l~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~  194 (389)
T COG2956         122 LLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASS  194 (389)
T ss_pred             hhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhh
Confidence            333333333322211      2233344555555555555555555555444443222 122334445555555555555


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-cc
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EE  245 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~  245 (289)
                      +.+.|+..+.+++.....    ...   +-..+|.+++..|++.+|++.++..++.+|.|.    ..++..|..+|. .|
T Consensus       195 ~~d~A~~~l~kAlqa~~~----cvR---Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl----~evl~~L~~~Y~~lg  263 (389)
T COG2956         195 DVDRARELLKKALQADKK----CVR---ASIILGRVELAKGDYQKAVEALERVLEQNPEYL----SEVLEMLYECYAQLG  263 (389)
T ss_pred             hHHHHHHHHHHHHhhCcc----cee---hhhhhhHHHHhccchHHHHHHHHHHHHhChHHH----HHHHHHHHHHHHHhC
Confidence            555555555555422100    000   112234455555555555555555555444442    123444444443 55


Q ss_pred             CHHHHHHHHHhcccc
Q 022992          246 DIAKFTDVVKEFDSM  260 (289)
Q Consensus       246 d~~~~~~al~~~~~~  260 (289)
                      +++.+..-+..+...
T Consensus       264 ~~~~~~~fL~~~~~~  278 (389)
T COG2956         264 KPAEGLNFLRRAMET  278 (389)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            555555554444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.10  E-value=3e-08  Score=94.54  Aligned_cols=179  Identities=15%  Similarity=0.144  Sum_probs=138.6

Q ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc---cC-C
Q 022992           27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT-S   87 (289)
Q Consensus        27 ~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~---~~-~   87 (289)
                      +||-+|+.+|..|               |.||...|+.+.|...|++++++-.      ..+.++..+|.+-.   .. .
T Consensus       178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp------~~v~alv~L~~~~l~~~d~~s  251 (1018)
T KOG2002|consen  178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP------TCVSALVALGEVDLNFNDSDS  251 (1018)
T ss_pred             ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh------hhHHHHHHHHHHHHHccchHH
Confidence            8999999999997               5689999999999999999998843      23444545554432   22 6


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (289)
Q Consensus        88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (289)
                      +..++..+.+|-.+...+-.      +++-++..+..-|+|+.+...+.-|+....   .....++.+.++|..|-.+|+
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~------~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPV------ALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcH------HHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhcc
Confidence            77888888888777655554      888888888877999999999999987642   234566789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       168 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      |++|..+|.++.....++    +  --.++.+|.+++..||+..+.-+|++.+...|.-
T Consensus       323 ~ekA~~yY~~s~k~~~d~----~--~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~  375 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDN----F--VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN  375 (1018)
T ss_pred             HHHHHHHHHHHHccCCCC----c--cccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence            999999999987432221    1  1124568899999999999999999998876653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.7e-08  Score=88.57  Aligned_cols=220  Identities=12%  Similarity=0.088  Sum_probs=150.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC------H--
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR------L--  108 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~------~--  108 (289)
                      .+.+|...|.+.+++....++.+.-+... +....+.++..+|..|... +++.++.+|++++.-++....      .  
T Consensus       263 ~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek  342 (539)
T KOG0548|consen  263 IAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEK  342 (539)
T ss_pred             HHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence            35566777888888888777777765443 3445778888889999777 999999999999887765111      0  


Q ss_pred             ------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992          109 ------------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       109 ------------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                                  ...+.....-|..+...|+|..|+.+|.+|+...+.+.      ..+.+.|-+|.++|.+..|++..+
T Consensus       343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da------~lYsNRAac~~kL~~~~~aL~Da~  416 (539)
T KOG0548|consen  343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA------RLYSNRAACYLKLGEYPEALKDAK  416 (539)
T ss_pred             HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence                        11133334458888888999999999999998765443      578999999999999999999988


Q ss_pred             HHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHHc-ccCH-HHHHHH
Q 022992          177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASMD-EEDI-AKFTDV  253 (289)
Q Consensus       177 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~~-~~d~-~~~~~a  253 (289)
                      ..+..  ..     .....|++-|.|+..+.+++.|.++|+++++.+|.-   .|. .-+..+..+.. ..++ +..+++
T Consensus       417 ~~ieL--~p-----~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~---~e~~~~~~rc~~a~~~~~~~ee~~~r~  486 (539)
T KOG0548|consen  417 KCIEL--DP-----NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN---AEAIDGYRRCVEAQRGDETPEETKRRA  486 (539)
T ss_pred             HHHhc--Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence            88743  21     122346666888888999999999999999987653   232 22333444331 2223 444554


Q ss_pred             HHhccccCC--CchhHHHHHHHHH
Q 022992          254 VKEFDSMTP--LDPWKTTLLLRVK  275 (289)
Q Consensus       254 l~~~~~~~~--~d~~~~~~~~~~~  275 (289)
                      +.+ +.+..  .||.++.++....
T Consensus       487 ~~d-pev~~il~d~~m~~~l~q~q  509 (539)
T KOG0548|consen  487 MAD-PEVQAILQDPAMRQILEQMQ  509 (539)
T ss_pred             ccC-HHHHHHHcCHHHHHHHHHHH
Confidence            444 33322  3666665555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.08  E-value=5.3e-08  Score=83.86  Aligned_cols=192  Identities=19%  Similarity=0.190  Sum_probs=147.5

Q ss_pred             CCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHHH--HHHHHHHHHHH
Q 022992           27 SKYEDAADLFDKA--------------------ANSFKLAKSWDKAGATYVKLANCHLKLE--SKHE--AAQAYVDAAHC   82 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~--aa~~~~~~a~~   82 (289)
                      +-+.++.+.|+.|                    +.+|-...|+++|+-+-.+|+++.+..+  ++..  -+-++..++..
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa  215 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA  215 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence            3456666666666                    4568888999999999999999998765  4322  23345556777


Q ss_pred             HccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           83 YKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        83 ~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                      ++.. ++..|.++++.|..+....||....++++.-+|.+|...|+.+.|...|++|..+....|+......++...+.+
T Consensus       216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc  295 (518)
T KOG1941|consen  216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC  295 (518)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            7766 999999999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             HHHhcCHHH-----HHHHHHHHHHH--HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          162 AAELEQYHK-----SIEIYEEIARQ--SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       162 ~~~~g~~~~-----A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +....-..+     |++.-++.+..  .++.   ++.+......+..+|..+|+.++-...+.++-+
T Consensus       296 ~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  296 LETLRLQNKICNCRALEFNTRLLEVASSIGA---KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            876654444     77777766533  2332   222333345567788888877776666666533

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.06  E-value=8e-08  Score=82.79  Aligned_cols=207  Identities=14%  Similarity=0.117  Sum_probs=144.4

Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc----chHHH
Q 022992           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT----TSANQ  153 (289)
Q Consensus        79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~----~~~~~  153 (289)
                      ++.++.-. .+++++++|++|+.+...++|+...-.+...+|..+..+.|+++|+-+..+|+++....+-.    .....
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            34444333 57899999999999999999999999999999999999999999999999999998766522    22334


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREY  232 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~  232 (289)
                      ++..++..+..+|+...|.++.+++....+..+.-... ...+...+-+|...||.+.|...|+.+..+..+.+ +-.+.
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~-arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv  286 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ-ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV  286 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence            67788888999999999999999996443332111111 22344567889999999999888888776655554 22344


Q ss_pred             HHHHHHHHHHcc---c-------CHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCC
Q 022992          233 RLLSDIAASMDE---E-------DIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDD  287 (289)
Q Consensus       233 ~~l~~l~~a~~~---~-------d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  287 (289)
                      ..+.........   .       -++.-++.++...+++. ...-.++-.|++...+..|++.++
T Consensus       287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~-K~~vlK~hcrla~iYrs~gl~d~~  350 (518)
T KOG1941|consen  287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA-KLSVLKLHCRLASIYRSKGLQDEL  350 (518)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhccchhHH
Confidence            444443332210   0       13555566666556653 233446777888888888887654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.06  E-value=2.4e-09  Score=73.86  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+.++.++|.+|... ++++|+++|++|+++....|+.. ..+.++.++|.++...|++++|+++|++|+++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            345556666666554 66666666666666655555433 3466666666666666666666666666666543

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1.8e-08  Score=91.19  Aligned_cols=194  Identities=15%  Similarity=0.147  Sum_probs=136.0

Q ss_pred             CcchHhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 022992            1 MGDQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------AANSFKLAKSWDKAGATYVKLANCHLKL   66 (289)
Q Consensus         1 ~~~~~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~--------------A~~~~~~~g~~~~A~~~~~~a~~~~~~~   66 (289)
                      +||++++++.||++.            +..+|+-+|+.              .|.+...-++=..|+..+++|+++-...
T Consensus       285 ~pdPf~eG~~lm~nG------------~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N  352 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNG------------DLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN  352 (579)
T ss_pred             CCChHHHHHHHHhcC------------CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc
Confidence            456667777666654            34444444444              4566666667788899999998874321


Q ss_pred             CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH----------------------------------HHhcCCH---
Q 022992           67 ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM----------------------------------FCDIGRL---  108 (289)
Q Consensus        67 ~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~----------------------------------~~~~g~~---  108 (289)
                            -.++..+|..|... .-.+|..++.+-+..                                  |......   
T Consensus       353 ------leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~  426 (579)
T KOG1125|consen  353 ------LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT  426 (579)
T ss_pred             ------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence                  33556666666544 344566665555433                                  2211100   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      ..-+++...||++|.-.|++++|+.+|+.|+..-+.+.      ..+++||-.+....+..+|+..|++++...  ++. 
T Consensus       427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~y-  497 (579)
T KOG1125|consen  427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWNRLGATLANGNRSEEAISAYNRALQLQ--PGY-  497 (579)
T ss_pred             CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCe-
Confidence            12355677889999999999999999999998766554      578999999999999999999999998443  221 


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                          ....+++|+++.-.|.+.+|.+.|-.++.+.+.
T Consensus       498 ----VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 ----VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             ----eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence                123478999999999999999999999887765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.05  E-value=8.5e-07  Score=88.82  Aligned_cols=184  Identities=12%  Similarity=-0.033  Sum_probs=143.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      .+.++...|++++|...+.++++... .++....+.++..+|.++... ++++|..++++++......|.....+.++..
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            35567789999999999999987633 234444556667788887655 9999999999999999999999888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  195 (289)
                      +|.++...|++++|..++++++++....+..  .....++..+|.++...|++++|...++++........  .......
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~  614 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQC  614 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHH
Confidence            9999999999999999999999998776532  22234466789999999999999999999874432111  1112234


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      +..++.++...|++..|...+..+..+...
T Consensus       615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        615 LAMLAKISLARGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            455677888999999999999988765443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.04  E-value=4.7e-09  Score=81.48  Aligned_cols=114  Identities=12%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      ..++++|+++-+..         +...|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|++++|
T Consensus        13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A   77 (144)
T PRK15359         13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTA   77 (144)
T ss_pred             HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHH
Confidence            35677887776642         4567888888999999999999999875543      36889999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      +..|++++....       .....++++|.|+...|++.+|...|++++.+.|...
T Consensus        78 ~~~y~~Al~l~p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         78 INFYGHALMLDA-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HHHHHHHHhcCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            999999985432       2234678899999999999999999999999888765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.01  E-value=4.9e-08  Score=85.05  Aligned_cols=153  Identities=13%  Similarity=0.047  Sum_probs=116.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~  125 (289)
                      +..+.++..+.+++....  -++...+..+.+.|.+|... ++++|+..|++|+.+.+..      +.++..+|.++...
T Consensus        40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~  111 (296)
T PRK11189         40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA  111 (296)
T ss_pred             hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence            455677777777664321  24456678899999999776 9999999999999987654      45999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (289)
Q Consensus       126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  205 (289)
                      |++++|+..|++|+++.+...      .++.++|.++...|++++|++.|++++...+.++   +  ...+.   .+...
T Consensus       112 g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~---~--~~~~~---~l~~~  177 (296)
T PRK11189        112 GNFDAAYEAFDSVLELDPTYN------YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP---Y--RALWL---YLAES  177 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---H--HHHHH---HHHHc
Confidence            999999999999999876542      4789999999999999999999999985543221   1  11111   12345


Q ss_pred             cCCHHHHHHHHHHHhh
Q 022992          206 KGDVVAITNALERYQD  221 (289)
Q Consensus       206 ~gd~~~A~~~~~~~~~  221 (289)
                      .++.++|...|.+...
T Consensus       178 ~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        178 KLDPKQAKENLKQRYE  193 (296)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            6788888888866543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.01  E-value=5.1e-09  Score=72.24  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ...+.++.++|.+|..+|++++|+.+|++|+++.+..|... ..+.++.++|.++..+|++++|+++|++++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45788999999999999999999999999999977777554 46889999999999999999999999999743

...

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1.4e-08  Score=89.75  Aligned_cols=218  Identities=15%  Similarity=0.135  Sum_probs=147.0

Q ss_pred             CCHHHHHHHHHHHHHH--------------HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKAANS--------------FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~--------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      .++..|.++.+.|.++              -...|++++|+++|..|+      ++......++.++|..+... ++++|
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal------~ndasc~ealfniglt~e~~~~ldea  543 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL------NNDASCTEALFNIGLTAEALGNLDEA  543 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH------cCchHHHHHHHHhcccHHHhcCHHHH
Confidence            4566666665555332              223578888888887775      34455677888999998877 99999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      ++||-+...+...      -+.+|+.++.+|+.+.++.+||++|.++..+.+.+.      .++.+||++|-.-|+-.+|
T Consensus       544 ld~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~slip~dp------~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  544 LDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP------AILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH------HHHHHHHHHhhcccchhhh
Confidence            9999988888764      456999999999999999999999999988876543      5789999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHH
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFT  251 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~  251 (289)
                      ..++-+.....+-    ...+.+   -++..|+...=+++++..|+++.-+-|....+       +|..+.+..+...++
T Consensus       612 fq~~ydsyryfp~----nie~ie---wl~ayyidtqf~ekai~y~ekaaliqp~~~kw-------qlmiasc~rrsgnyq  677 (840)
T KOG2003|consen  612 FQCHYDSYRYFPC----NIETIE---WLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-------QLMIASCFRRSGNYQ  677 (840)
T ss_pred             hhhhhhcccccCc----chHHHH---HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-------HHHHHHHHHhcccHH
Confidence            9987555311100    111111   12344555555778999999986665553311       233333333445677


Q ss_pred             HHHHhccccCCCchhHH---HHHHHHHH
Q 022992          252 DVVKEFDSMTPLDPWKT---TLLLRVKE  276 (289)
Q Consensus       252 ~al~~~~~~~~~d~~~~---~~~~~~~~  276 (289)
                      +|+..|+.+++-=|.+.   .+++||.-
T Consensus       678 ka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  678 KAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            77777777766434444   44455543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.2e-07  Score=80.56  Aligned_cols=211  Identities=15%  Similarity=0.101  Sum_probs=146.8

Q ss_pred             cchHhhHHHHHHHHH--------Hhhc-cCCCCC-CCHHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHH
Q 022992            2 GDQIARAEEFEKKAE--------KKLN-GWGLFG-SKYEDAADLFDKAA-----------NSFKLAKSWDKAGATYVKLA   60 (289)
Q Consensus         2 ~~~~~~a~~~~~~A~--------~~~k-~~~~~~-~~~~~A~~~~~~A~-----------~~~~~~g~~~~A~~~~~~a~   60 (289)
                      |+++.+|.+++.+--        .++. |..|.+ |..|.|+......-           .+....|+--.+.-.+.+|-
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            566777888877653        3333 322334 88999987655441           11222222223334455555


Q ss_pred             HHHHhcCC-HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           61 NCHLKLES-KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (289)
Q Consensus        61 ~~~~~~~~-~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A  138 (289)
                      +++..+-+ +..+-.++..+..+|... ++++||+..++-..+-.+ ......|..+-.++..+....+.+.|+..+.+|
T Consensus       128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            55555444 455566888899999888 999999998876665432 344578899999999999889999999999999


Q ss_pred             HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      ++..+..-      .+-..+|.+....|+|+.|++.++.+......      -.....-.+-.||...|+.......+.+
T Consensus       207 lqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~------yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         207 LQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQNPE------YLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             HhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            98755421      23467899999999999999999999743211      1233344566799999999999999988


Q ss_pred             HhhcCCC
Q 022992          219 YQDMDPT  225 (289)
Q Consensus       219 ~~~~~~~  225 (289)
                      +.+..+.
T Consensus       275 ~~~~~~g  281 (389)
T COG2956         275 AMETNTG  281 (389)
T ss_pred             HHHccCC
Confidence            8775544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.7e-08  Score=89.03  Aligned_cols=215  Identities=11%  Similarity=0.103  Sum_probs=154.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |..|...|.+++|..+|-||-.+-...|      .+|...|..|--. +.++|+.+|..|..+++...-|      ..-+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fg------paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP------~LYl  386 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFG------PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP------SLYL  386 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCcccc------HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch------HHHH
Confidence            5567778999999999999988754433      2555667777444 8899999999999999877663      4557


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.-|...++++-|-.+|.+|+.+.+.+.      -+++.+|.+....+.|.+|..+|+.++............-.-.+.+
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dp------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSDP------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCcc------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence            7888888999999999999999998754      4789999999999999999999999973322111111111234678


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  277 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~  277 (289)
                      +|.++...+.+..|+..|++++.+.|...+     ....++-.+ ..|+   +..|+..|...--++|.++.+-.-++..
T Consensus       461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~-----~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  461 LGHAYRKLNKYEEAIDYYQKALLLSPKDAS-----THASIGYIYHLLGN---LDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCchh-----HHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            999999999999999999999998888652     222333222 2343   4445555555555566665554445555


Q ss_pred             ccc
Q 022992          278 LKA  280 (289)
Q Consensus       278 ~~~  280 (289)
                      |..
T Consensus       533 ie~  535 (611)
T KOG1173|consen  533 IED  535 (611)
T ss_pred             HHh
Confidence            444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=1.5e-08  Score=86.20  Aligned_cols=196  Identities=10%  Similarity=0.058  Sum_probs=115.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (289)
Q Consensus        38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~  116 (289)
                      -...+|....++..|+..|-+.++.+.      +....+...+.++... +.++|+++|+.++..-..+=      .++.
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv------EaiA  328 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV------EAIA  328 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc------eeee
Confidence            334444444444444444444443322      1122333334444333 45555555555544422111      1233


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      -+|.-|..-++++-|+.+|++.+.+-..      ..+.+.++|-+....++++-++..|+++.....++    -.....|
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaDvW  398 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAADVW  398 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhhhh
Confidence            3444455456677777777776665332      23678889988888899999999999987544322    2355678


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-HHcccCHHHHHHHHHhcccc
Q 022992          197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-SMDEEDIAKFTDVVKEFDSM  260 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a~~~~d~~~~~~al~~~~~~  260 (289)
                      +++|.+....||+.-|..+|+-++.-++.++     ..+++|+. +...||.+..+..+....++
T Consensus       399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-----ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-----EALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             hccceeEEeccchHHHHHHHHHHhccCcchH-----HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            8888888888999999999988877655543     44666664 44678876666555554433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.98  E-value=1.2e-08  Score=88.19  Aligned_cols=214  Identities=17%  Similarity=0.245  Sum_probs=99.4

Q ss_pred             HhhHHHHHHHHHHhh-c-c----CC-----CCC-CCHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKL-N-G----WG-----LFG-SKYEDAADLFDKAANS-------------FKLAKSWDKAGATYVKL   59 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~-k-~----~~-----~~~-~~~~~A~~~~~~A~~~-------------~~~~g~~~~A~~~~~~a   59 (289)
                      +++|.+.++++-... . .    |.     .|. +++++|...|.+....             +...+++++|+.+++++
T Consensus        24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~  103 (280)
T PF13429_consen   24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKA  103 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            677888885543333 1 1    11     123 7788888888776321             23456777777776665


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (289)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A  138 (289)
                      .+-.   ++    ...+..+..++... +++++.+.++++..    .........++...|.++...|++++|+..|++|
T Consensus       104 ~~~~---~~----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen  104 YERD---GD----PRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             ---------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             cccc---cc----cchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4332   22    23344455555554 88888888887663    2223456778999999999999999999999999


Q ss_pred             HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      +++.+.+.      .+...++.+++..|+++++.+.+.........++       ..+...+.++...|++.+|...|++
T Consensus       173 l~~~P~~~------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  173 LELDPDDP------DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-------DLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHH-TT-H------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-------CHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHcCCCCH------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-------HHHHHHHHHhccccccccccccccc
Confidence            99987643      4678899999999999998888877754332222       1334567888899999999999999


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992          219 YQDMDPTFSGTREYRLLSDIAASMD-EEDI  247 (289)
Q Consensus       219 ~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~  247 (289)
                      +....|.     ...++..+++++. .|+.
T Consensus       240 ~~~~~p~-----d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  240 ALKLNPD-----DPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HHHHSTT------HHHHHHHHHHHT-----
T ss_pred             ccccccc-----cccccccccccccccccc
Confidence            8876554     2245566676664 4443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.97  E-value=6.5e-08  Score=79.16  Aligned_cols=132  Identities=10%  Similarity=0.139  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH-HHh
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AEL  165 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~  165 (289)
                      +.++++..+++++...+...+      .|..+|.++...|++++|+..|++|+.+.+..      ..++..+|.++ ...
T Consensus        54 ~~~~~i~~l~~~L~~~P~~~~------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~  121 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQNSE------QWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQA  121 (198)
T ss_pred             hHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc
Confidence            778899999999988776544      89999999999999999999999999997754      35788999875 677


Q ss_pred             cC--HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 022992          166 EQ--YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA  239 (289)
Q Consensus       166 g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~  239 (289)
                      |+  +++|.+.+++++.....       ....++.+|.++...|++++|...+++++++.|.-.  ....++..+-
T Consensus       122 g~~~~~~A~~~l~~al~~dP~-------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~--~r~~~i~~i~  188 (198)
T PRK10370        122 GQHMTPQTREMIDKALALDAN-------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV--NRTQLVESIN  188 (198)
T ss_pred             CCCCcHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--cHHHHHHHHH
Confidence            87  59999999999855322       234567889999999999999999999998877633  2234444433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.4e-07  Score=82.61  Aligned_cols=55  Identities=25%  Similarity=0.351  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhhc-cCCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH
Q 022992            8 AEEFEKKAEKKLN-GWGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANC   62 (289)
Q Consensus         8 a~~~~~~A~~~~k-~~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~   62 (289)
                      +++.++.|...=+ |+-+|+ ++|++|+++|.+|              +.||...|+|++-++...+|+++
T Consensus       108 ~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl  178 (606)
T KOG0547|consen  108 KEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL  178 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            4556666655443 766776 9999999999999              56899999999999988888765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4.7e-08  Score=87.07  Aligned_cols=194  Identities=19%  Similarity=0.219  Sum_probs=135.4

Q ss_pred             HHHhhc-cCC-CCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           15 AEKKLN-GWG-LFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD   78 (289)
Q Consensus        15 A~~~~k-~~~-~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~   78 (289)
                      |+.++- |.| |.+||+..|-+.|+.+              +.+|....+..+-...|.+|.++-...-+      .|..
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyH  399 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYH  399 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHh
Confidence            444443 434 3346666666665555              45566677778888888888877544322      4445


Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus        79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      -|.++.-+ ++++|+.=|++|+++.+.      -+-.+..++-...+++.++++...|+.+..-|+.-      +++++-
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~  467 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNL  467 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHH
Confidence            56666555 889999999999988764      34467777777777789999999999999888753      478999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      .|.++..+++|++|++.|..++.........-.+..-...++.++..=.+|+.+|.+.++++++++|.-
T Consensus       468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc  536 (606)
T KOG0547|consen  468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC  536 (606)
T ss_pred             HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH
Confidence            999999999999999999999844322111111222122233233223489999999999999999874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.95  E-value=1.3e-08  Score=87.95  Aligned_cols=172  Identities=15%  Similarity=0.136  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHH
Q 022992           27 SKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI   92 (289)
Q Consensus        27 ~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~   92 (289)
                      +++++|.+++.++             ..++...++++++...+.++..    ..........+...|.++.+. ++++|+
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666655544             4567788999999988888663    222334567888889999776 999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus        93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      .+|++|+...+.+.+      ++..++.++...|+++++.+.+.......+.+.      ..+..+|.++..+|++++|+
T Consensus       167 ~~~~~al~~~P~~~~------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  167 RDYRKALELDPDDPD------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             HHHHHHHHH-TT-HH------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHH
T ss_pred             HHHHHHHHcCCCCHH------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhcccccccccc
Confidence            999999999886554      777889999999999997777777766654433      25677899999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      .+|+++......+       ...+...+.++...|+.+.|.....++..
T Consensus       235 ~~~~~~~~~~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  235 EYLEKALKLNPDD-------PLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHSTT--------HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccc-------ccccccccccccccccccccccccccccc
Confidence            9999997543332       22345667888889999999888877654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.94  E-value=3.7e-08  Score=94.47  Aligned_cols=168  Identities=14%  Similarity=0.071  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      +...++-.+....+....+....-++....+.   +..-+.++.++|.+.... .+++|..+++.++++.++.-.     
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----  121 (694)
T PRK15179         50 ELLQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----  121 (694)
T ss_pred             HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----
Confidence            34444555555666666666666666666553   333377888899998777 999999999999999886554     


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                       +..+++.++.+++++++|+..+++++...+..      +..+..+|.++..+|+|++|+.+|++++...   +    ..
T Consensus       122 -a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---p----~~  187 (694)
T PRK15179        122 -AFILMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERLSRQH---P----EF  187 (694)
T ss_pred             -HHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC---C----Cc
Confidence             89999999999999999999999999876653      3678999999999999999999999997421   1    23


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      ...+.+.|.++...|+.++|..+|+++.+..
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            4567788888888999999999999987743

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=8.8e-09  Score=87.51  Aligned_cols=164  Identities=13%  Similarity=0.098  Sum_probs=126.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      ++++...+++++|++.|..+++....    .-+  +..-+|.-|.-. +++-|+.+|++.+.+-...+.      .+.||
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~~~----nvE--aiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~Ni  364 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLHPI----NVE--AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNI  364 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCc----cce--eeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhH
Confidence            45566667777777777766665321    111  111123334434 899999999999998776665      89999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.|...-+.+|-++..|++|+......+   .+++++.+||.+.+..|++.-|..+|+-++...       -...+.+.+
T Consensus       365 gLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-------~~h~ealnN  434 (478)
T KOG1129|consen  365 GLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-------AQHGEALNN  434 (478)
T ss_pred             HHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccC-------cchHHHHHh
Confidence            9999988999999999999999876544   578999999999999999999999999886332       133456888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ++......||.++|+..++.+.++.|.
T Consensus       435 LavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  435 LAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            988888899999999999998877665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=2.9e-08  Score=77.08  Aligned_cols=109  Identities=9%  Similarity=-0.032  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           54 ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTI  132 (289)
Q Consensus        54 ~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~  132 (289)
                      ..+.+++++-..     .    +...|.++... ++++|+.+|++++.+-+..      ..++..+|.++...|++++|+
T Consensus        14 ~~~~~al~~~p~-----~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~   78 (144)
T PRK15359         14 DILKQLLSVDPE-----T----VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI   78 (144)
T ss_pred             HHHHHHHHcCHH-----H----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence            355666666322     1    33456666544 9999999999999886654      458999999999999999999


Q ss_pred             HHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 022992          133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (289)
Q Consensus       133 ~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  183 (289)
                      .+|++|+.+.+...      ..+.++|.++..+|++++|+..|++++....
T Consensus        79 ~~y~~Al~l~p~~~------~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         79 NFYGHALMLDASHP------EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             HHHHHHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999866543      5789999999999999999999999986543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.90  E-value=1.1e-07  Score=73.45  Aligned_cols=103  Identities=11%  Similarity=0.051  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      ...-..+..+|-.+...|++++|...|+-.+.+.+.      ....+.+||.++..+|+|++|+..|.+++...+++   
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---  102 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---  102 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence            344456777888888889999999999999887654      34688999999999999999999999998554333   


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                          ...++++|.|++..|+.+.|+++|+.++....
T Consensus       103 ----p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        103 ----PQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence                23568899999999999999999999987663

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.88  E-value=1.2e-07  Score=93.01  Aligned_cols=202  Identities=14%  Similarity=0.091  Sum_probs=126.8

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        44 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                      ...|++++|+..|++++.....  .+.. +..+  +|.+|... ++++|+.+|++++..-+..  ..........++..+
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~--~P~~-a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~--~~~~~~~~~~L~~a~  320 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQI--IPPW-AQRW--VASAYLKLHQPEKAQSILTELFYHPETI--ADLSDEELADLFYSL  320 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCC--CCHH-HHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCC--CCCChHHHHHHHHHH
Confidence            4568888888888887655211  1111 2222  36666555 8888888888887654322  111223455666666


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhcc--------Cccc-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          123 ESEHNIEQTIVFFEKAADMFQNE--------EVTT-SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       123 ~~~g~~~~A~~~y~~A~~~~~~~--------~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ...|++++|+.+++++....+..        ..+. ....++..++.++...|++++|++.+++++...+++       .
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-------~  393 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-------Q  393 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence            77788888888888888775421        1111 233466778888888888888888888886443222       2


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHHcccCHHHHHHHHHhccccCCCc
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA-ASMDEEDIAKFTDVVKEFDSMTPLD  264 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~-~a~~~~d~~~~~~al~~~~~~~~~d  264 (289)
                      ..+...+.++...|++.+|...+++++.+.|.....     ...++ .+...++.+.....++......+-+
T Consensus       394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l-----~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL-----EVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            345667777778888888888888888888877521     22222 3345667766666666655555444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.81  E-value=2.4e-06  Score=83.96  Aligned_cols=185  Identities=9%  Similarity=-0.008  Sum_probs=138.4

Q ss_pred             CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992           27 SKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (289)
Q Consensus        27 ~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~   90 (289)
                      +++++|+..|.++               +.+|...|++++|...|.+++....  .+..........++.++.+. ++++
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHH
Confidence            6788888877776               3467788999999999998775321  11111123455666666555 9999


Q ss_pred             HHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           91 AISCLEQAVNMFCDIGRLS---------MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~---------~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                      |+.+++++....+..-...         .....+..+|.++...|++++|+..+++++...+.      ....+..+|.+
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l  402 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASV  402 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence            9999998876654432222         12457788999999999999999999999987543      25789999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       162 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      +...|++++|++.+++++...+++       ...+...+.+++..|++.+|...+++.++..|.-
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~Pd~-------~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLEPRN-------INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999998554222       2245566788899999999999999998866553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.80  E-value=1.2e-06  Score=68.02  Aligned_cols=136  Identities=17%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (289)
Q Consensus        29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~  107 (289)
                      -.+|...|..+...+. .+++..+...+.+...-+.   +..-+..+...+|.++... ++++|+..|++++.-.   .+
T Consensus         8 ~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d   80 (145)
T PF09976_consen    8 AEQASALYEQALQALQ-AGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PD   80 (145)
T ss_pred             HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC
Confidence            3567778888877774 7888888776666665433   3334455666677777655 9999999999998843   45


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +.....+...+|.++...|++++|+..++..       ......+.+....|+++...|++++|+..|+++
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5666778889999999999999999999651       223345567889999999999999999999986

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.8e-07  Score=81.79  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      +.--|.++....+.+.|+.+|++++.+.+.-...      ...-..+..-|.-..+.|+|..|.++|.+++...+.+   
T Consensus       206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n---  282 (486)
T KOG0550|consen  206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN---  282 (486)
T ss_pred             HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc---
Confidence            3334555555578888888888888876643221      2222344555666778888888888888887443322   


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH-HHHcccCHHHHHHHHHhccccCCCc--h
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIA-ASMDEEDIAKFTDVVKEFDSMTPLD--P  265 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~-~a~~~~d~~~~~~al~~~~~~~~~d--~  265 (289)
                      .-.....|.+.+.+....|...+|+..-+.++.+++++.        ..++ .+-+.-+++.|+.|+++|....+++  +
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~  354 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCHLALEKWEEAVEDYEKAMQLEKDC  354 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            112334566677777788888888888888888776652        2222 2334456778888888888776654  3


Q ss_pred             hHHHHHHHHHHhcc
Q 022992          266 WKTTLLLRVKEKLK  279 (289)
Q Consensus       266 ~~~~~~~~~~~~~~  279 (289)
                      ....+|.+.+..|.
T Consensus       355 e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  355 EIRRTLREAQLALK  368 (486)
T ss_pred             chHHHHHHHHHHHH
Confidence            34455555555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.76  E-value=2.3e-05  Score=74.85  Aligned_cols=96  Identities=11%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR  230 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~  230 (289)
                      ....+..++..+...|.|.+|+.+|..+....      .++....|.++|.|+...|.++.|..+|++++.+.|...+.+
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence            34567788888889999999999999886332      334466789999999999999999999999999888764332


Q ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHh
Q 022992          231 EYRLLSDIAASMDEEDIAKFTDVVKE  256 (289)
Q Consensus       231 e~~~l~~l~~a~~~~d~~~~~~al~~  256 (289)
                        ..|..|..  ..|+.++.-+++..
T Consensus       487 --i~Lasl~~--~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  487 --ITLASLYQ--QLGNHEKALETLEQ  508 (895)
T ss_pred             --hhHHHHHH--hcCCHHHHHHHHhc
Confidence              22222222  36666655555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.73  E-value=1.7e-07  Score=76.71  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=97.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY-E  123 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~-~  123 (289)
                      .++.++++..+.+++......      +..+..+|.+|... ++++|+.+|++|+.+.++..+      .+..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~------~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE------LYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Confidence            456677788887777764322      55888999999777 999999999999999876554      889999874 6


Q ss_pred             hcCC--HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          124 SEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       124 ~~g~--~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ..|+  +++|...++++++..+...      .++..+|.++...|+|++|+.+|++++..
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANEV------TALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6677  5999999999999877643      58899999999999999999999999744

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=2.6e-07  Score=70.58  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      ......+|..+...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++....       .
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------~   83 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------D   83 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C
Confidence            3467888899988899999999999998876542      35788999999999999999999998864321       1


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ....++.+|.++...|++..|...|++++++.|...
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            233456788899999999999999999988876543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.69  E-value=9e-07  Score=78.89  Aligned_cols=168  Identities=11%  Similarity=-0.061  Sum_probs=112.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      -+.++...|++++|...++++++....  +.    ..+.. +..+... ++..+.....+++..  ...........+..
T Consensus        49 ~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~----~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~  119 (355)
T cd05804          49 EALSAWIAGDLPKALALLEQLLDDYPR--DL----LALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGM  119 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC--cH----HHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHH
Confidence            355667789999999999999877432  11    11111 2222111 222222333333333  23344455667788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL  197 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  197 (289)
                      +|.++...|++++|+..+++++++.+..      ..++..+|.++...|++++|+.++++++.....++  . .....+.
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~--~-~~~~~~~  190 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS--M-LRGHNWW  190 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc--c-hhHHHHH
Confidence            8999999999999999999999987654      24678899999999999999999999874322111  1 1112345


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          198 NAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       198 ~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      .++.+++..|++++|...+++.....+
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            678889999999999999998765443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=9.1e-07  Score=80.42  Aligned_cols=192  Identities=13%  Similarity=0.125  Sum_probs=137.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |..+...|+..+|+-+|+.|+.-     + .+-+.+|..+|.+..+. +-..||..+++++++-+.+-.      ++..|
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkq-----d-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle------aLmaL  359 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQ-----D-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE------ALMAL  359 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhh-----C-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH------HHHHH
Confidence            44556678899999999988754     2 23477899999999877 668899999999999876554      88888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhc---------cCc----------------------------cchHHHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQN---------EEV----------------------------TTSANQCKQKVAQY  161 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~---------~~~----------------------------~~~~~~~~~~l~~~  161 (289)
                      |..|...|.-.+|+.++.+=+.....         .+.                            ...-+++..-||.+
T Consensus       360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL  439 (579)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence            99998888888888877776543310         000                            01223567778889


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992          162 AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS  241 (289)
Q Consensus       162 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a  241 (289)
                      |...|+|++|+.+|+.++...+.       -...|.++|.+..-.....+|+.+|++++++.|.|.+.+     .+|+..
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pn-------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-----yNlgIS  507 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPN-------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-----YNLGIS  507 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCc-------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-----hhhhhh
Confidence            99999999999999999844322       123577888775544578899999999999999998654     334444


Q ss_pred             HcccCHHHHHHHHHhc
Q 022992          242 MDEEDIAKFTDVVKEF  257 (289)
Q Consensus       242 ~~~~d~~~~~~al~~~  257 (289)
                      |-  ++..|++|++.|
T Consensus       508 ~m--NlG~ykEA~~hl  521 (579)
T KOG1125|consen  508 CM--NLGAYKEAVKHL  521 (579)
T ss_pred             hh--hhhhHHHHHHHH
Confidence            42  234444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.68  E-value=5.5e-07  Score=71.72  Aligned_cols=109  Identities=11%  Similarity=0.029  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      .....+.++..+|.++... ++++|+.+|++|+.+..   ++...+.++.++|.++...|++++|+.+|++|+.+.+..+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            3445677888889998766 99999999999998853   3344567899999999999999999999999999865443


Q ss_pred             cc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          147 VT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       147 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .. ...+.++..+|.++..+|++++|+..|.++.
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            21 2223344444444558889888888877775

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.67  E-value=4.1e-07  Score=87.40  Aligned_cols=157  Identities=12%  Similarity=0.049  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHhhccCCC-CC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992            7 RAEEFEKKAEKKLNGWGL-FG------------SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAA   73 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~-~~------------~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa   73 (289)
                      -+.+++++++..+...+. -+            -+|-.=.+.+...+.+....|++++|...++.++++....      .
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~  120 (694)
T PRK15179         47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------S  120 (694)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------H
Confidence            347889999998873211 11            1333334555666888889999999999999999986532      4


Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      .+..+.+.+..+. ++++|+..+++++..-+.+-      ..+..+|.++...|++++|+.+|++++.-.+      ...
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p------~~~  188 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA------REILLEAKSWDEIGQSEQADACFERLSRQHP------EFE  188 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC------CcH
Confidence            4666677777666 99999999999999877654      4899999999999999999999999997322      123


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      .++.++|.++...|+.++|...|++++..
T Consensus       189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        189 NGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            68899999999999999999999999744

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.64  E-value=2e-06  Score=66.80  Aligned_cols=134  Identities=15%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      +..|..+-..+...++..+...+++-..-   .++..-.......+|.++...|++++|+..|+++++..   .++....
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~   85 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKP   85 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHH
Confidence            33444444444433555554444444333   33334556778889999999999999999999999854   2334455


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~  220 (289)
                      .+..+++.++...|+|++|+..++.+.     ++  .+ ........|.+++..|+.++|+..|+.++
T Consensus        86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~-----~~--~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   86 LARLRLARILLQQGQYDEALATLQQIP-----DE--AF-KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcc-----Cc--ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            678899999999999999999997642     11  11 12234457999999999999999998763

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=1.1e-06  Score=69.94  Aligned_cols=113  Identities=13%  Similarity=0.096  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-  107 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-  107 (289)
                      +..+.++...|.++...|++++|...|.+++.+..   ++...+.++.++|.++... ++++|+.+|++|+.+.+..+. 
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            45567778889999999999999999999998843   3334466899999999887 999999999999998665432 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      ....+.++.++|..+...|+++.|+..|.+|+.+++..
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            22344555555555558899998888888888887653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=5.3e-07  Score=76.05  Aligned_cols=103  Identities=13%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      |..+..=|.-+.+.++|.+|+..|.+|+++.+.+.      ..|.+-+.+|.++|.|+.|++-++.++...  +     .
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA------VyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p-----~  147 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA------VYYCNRAAAYSKLGEYEDAVKDCESALSID--P-----H  147 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHhcchHHHHHHHHHHHhcC--h-----H
Confidence            44455555555555777777777777777665432      345666667777777777777777665331  1     1


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      -...|.++|++|+.+|++..|.+.|.++++++|...
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            123456667777777777777777777777666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.63  E-value=2.4e-06  Score=68.28  Aligned_cols=106  Identities=12%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             hcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        65 ~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      ........+.++.+.|.++... ++++|+.+|++++.+.+...   ..+.++.++|.++...|++++|+.+|++++.+.+
T Consensus        27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3345567788899999999776 99999999999998865432   2467899999999999999999999999999865


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcC-------HHHHHHHHHHHH
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQ-------YHKSIEIYEEIA  179 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~a~  179 (289)
                      ..      ...+..+|.++...|+       ++.|+..|+++.
T Consensus       104 ~~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~  140 (172)
T PRK02603        104 KQ------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA  140 (172)
T ss_pred             cc------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence            43      2455667777766655       455555554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.63  E-value=1.5e-06  Score=67.26  Aligned_cols=97  Identities=12%  Similarity=0.089  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           74 QAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        74 ~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      ..|.-+...|..+++++|...|+-.+.+-+.+      +..+.++|.+++..|++++||..|.+|+.+.+.+.      .
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp------~  104 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP------Q  104 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------h
Confidence            34444555566669999999999999887644      45999999999999999999999999999876443      5


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .+.++|.++...|+.+.|.+.|+.++..+
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            78999999999999999999999998665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.62  E-value=1.1e-06  Score=65.20  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      ++.+..+|..+...|++++|+..|.+++..++...   ....++..+|.++...|++++|+.+|+++.......+    .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~   74 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP----K   74 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC----c
Confidence            35778889999999999999999999988765322   2345778899999999999999999999875432221    1


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ....+..++.++...|+..+|...++++....|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            2234677888889999999999999998876655

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN02789 farnesyltranstransferase

Probab=98.62  E-value=6.9e-06  Score=72.09  Aligned_cols=175  Identities=9%  Similarity=0.029  Sum_probs=129.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Q 022992           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF  102 (289)
Q Consensus        25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~  102 (289)
                      .+++|.+|..+|..+   +...+..++|+..+.+++.+....      ..++..-+.++...  ++++++.++.+++...
T Consensus        32 y~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n  102 (320)
T PLN02789         32 YTPEFREAMDYFRAV---YASDERSPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDADLEEELDFAEDVAEDN  102 (320)
T ss_pred             eCHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence            347899999888876   566788999999999999884321      34555566666555  6899999999999988


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          103 CDIGRLSMAARYYKEIAELYESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       103 ~~~g~~~~~a~~l~~la~~~~~~g~~--~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      +++-.      ++...+.++...|+.  ++++.++.+++++.+++-      .++...+.++..+|+|++|++++.+++.
T Consensus       103 pknyq------aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy------~AW~~R~w~l~~l~~~~eeL~~~~~~I~  170 (320)
T PLN02789        103 PKNYQ------IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY------HAWSHRQWVLRTLGGWEDELEYCHQLLE  170 (320)
T ss_pred             CcchH------HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77665      788888888888774  788999999998876542      5889999999999999999999999986


Q ss_pred             HHhhccccccchhhHHHHHHHHHHcc---CC----HHHHHHHHHHHhhcCCCCC
Q 022992          181 QSLNNNLLKYGVKGHLLNAGICQLCK---GD----VVAITNALERYQDMDPTFS  227 (289)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~---gd----~~~A~~~~~~~~~~~~~~~  227 (289)
                      ....+       ..++...+.+....   |.    .+++.....+++.+.|...
T Consensus       171 ~d~~N-------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~  217 (320)
T PLN02789        171 EDVRN-------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE  217 (320)
T ss_pred             HCCCc-------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc
Confidence            54332       22344444443332   22    2356677777888887754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.62  E-value=5.5e-07  Score=62.67  Aligned_cols=98  Identities=19%  Similarity=0.317  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ++.++|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+++|+++.......       .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------A   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-------h
Confidence            567888888888999999999999988765432      577889999999999999999999887432111       1


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      ..+..++.++...|++..|...+.......|
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            3456778888889999999999888776554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.61  E-value=1.3e-05  Score=67.64  Aligned_cols=177  Identities=13%  Similarity=0.071  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      .+...|..+-..+ ..|++++|+..|++....+...   ..+..+...+|.+|.+. ++++|+.++++.+..++...+  
T Consensus        31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--  104 (243)
T PRK10866         31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--  104 (243)
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--
Confidence            4555677666664 5799999999999999987633   34445677889998777 999999999999999998765  


Q ss_pred             HHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEH---------------N---IEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQ  160 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g---------------~---~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~  160 (289)
                       +..++..+|.++...+               |   ..+|+..|++-++.|+...-...+           +.--..+|.
T Consensus       105 -~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~  183 (243)
T PRK10866        105 -IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE  183 (243)
T ss_pred             -hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5667777777653332               1   357889999999999876533222           122235667


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       161 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      .|.+.|.|.-|+.-++.++...++.+    ...+++..++..+...|..+.|......
T Consensus       184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~----~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        184 YYTKRGAYVAVVNRVEQMLRDYPDTQ----ATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHcCchHHHHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            88899999999999999986654432    2445677778888889999888777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.60  E-value=1.1e-05  Score=79.00  Aligned_cols=196  Identities=12%  Similarity=0.036  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..|.+ +.+....|+++.|++.|.++++.....     ....+ .++.++... +.++|+.++++++  .+.+.    ..
T Consensus        36 ~~y~~-aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~----~~  102 (822)
T PRK14574         36 TQYDS-LIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNI----SS  102 (822)
T ss_pred             HHHHH-HHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCC----CH
Confidence            34444 444557799999999999999885532     11112 555555444 8999999999998  22222    23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      ..+..+|.++...|++++|++.|+++++..+...      .++..++.++...+++++|++.++++......       .
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------~  169 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATELAERDPT-------V  169 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------h
Confidence            4555668899999999999999999999877652      45667789999999999999999998633211       1


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccC
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMT  261 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~  261 (289)
                      . .+...+.++...++..+|...+++.++..|...   +  .+..+..+. ..|-.....+.++.++.+-
T Consensus       170 ~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~---e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f  233 (822)
T PRK14574        170 Q-NYMTLSYLNRATDRNYDALQASSEAVRLAPTSE---E--VLKNHLEILQRNRIVEPALRLAKENPNLV  233 (822)
T ss_pred             H-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH---H--HHHHHHHHHHHcCCcHHHHHHHHhCcccc
Confidence            1 112223333335666668999999888776643   2  233333333 3444445555566555443

>PLN02789 farnesyltranstransferase

Probab=98.59  E-value=2.2e-05  Score=69.01  Aligned_cols=223  Identities=9%  Similarity=-0.023  Sum_probs=143.2

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--H
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--S   88 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--~   88 (289)
                      +.++.|...+.++              +.++...| ++++++.++.+++....+.      ..++..-+.++... +  .
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCchhh
Confidence            4666777777666              23455566 6789999999998875432      22344445455443 2  3


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---
Q 022992           89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---  165 (289)
Q Consensus        89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---  165 (289)
                      +++++++.+++++.+++-.      ++...+.++...|+++++++++.+++++...+.      .+++..+.++..+   
T Consensus       125 ~~el~~~~kal~~dpkNy~------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~------sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYH------AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN------SAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHHHHHHHHHhCcccHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch------hHHHHHHHHHHhcccc
Confidence            7889999999998876655      899999999999999999999999999876554      4677777776655   


Q ss_pred             cCH----HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992          166 EQY----HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSD  237 (289)
Q Consensus       166 g~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~  237 (289)
                      |.+    ++++.+..+++...+.+.       ..+...+.++..    .+...++...+.++....+.   +.  ..+.-
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~P~N~-------SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~---s~--~al~~  260 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILANPRNE-------SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN---HV--FALSD  260 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhCCCCc-------CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC---cH--HHHHH
Confidence            333    467888878875543321       233434333333    23345577777665553332   22  33555


Q ss_pred             HHHHHcccC----------------HHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          238 IAASMDEED----------------IAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       238 l~~a~~~~d----------------~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      |++.+..+.                ......|++-+..+...||.=.+-|.-.+..|+
T Consensus       261 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~~~~~  318 (320)
T PLN02789        261 LLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAWRKSKLP  318 (320)
T ss_pred             HHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHHHHHhhc
Confidence            555554321                113466777777777778877777766555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.58  E-value=1.8e-05  Score=70.50  Aligned_cols=202  Identities=13%  Similarity=-0.030  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l  115 (289)
                      +.-.+.++...|+++.+...+.++.......-+..+.  .+..+...+...++++|..+++++++..+...      ..+
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~------~a~   80 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERER--AHVEALSAWIAGDLPKALALLEQLLDDYPRDL------LAL   80 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH------HHH
Confidence            3344577778899999999999988877643332222  22333333445599999999999998865432      122


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  195 (289)
                      .. +..+...|++..+.....+++..  ..........++..+|.++...|++++|+..+++++.....+       ...
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-------~~~  150 (355)
T cd05804          81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-------AWA  150 (355)
T ss_pred             HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cHH
Confidence            22 44444445555555555555554  222333445567789999999999999999999998553222       234


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHh
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKE  256 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~  256 (289)
                      +..++.++...|++++|...+++.+...+.-. .........++..+ ..|+.+.....++.
T Consensus       151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~  211 (355)
T cd05804         151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-MLRGHNWWHLALFYLERGDYEAALAIYDT  211 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc-chhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56678888999999999999999888765421 11111112233333 47777655555544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.56  E-value=7.6e-06  Score=65.41  Aligned_cols=100  Identities=11%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      ......+.++..+|..+...|++++|+.+|++++.+.+..   .....++..+|.++..+|++++|+.+|++++..... 
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-  104 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-  104 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence            4455677889999999999999999999999999886542   223468899999999999999999999999854321 


Q ss_pred             cccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~  215 (289)
                            ....+..+|.++...|+...+...
T Consensus       105 ------~~~~~~~lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603        105 ------QPSALNNIAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             ------cHHHHHHHHHHHHHcCChHhHhhC
Confidence                  123345667777766664443333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.53  E-value=1.6e-05  Score=75.90  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=138.9

Q ss_pred             CCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992           27 SKYED-AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD  104 (289)
Q Consensus        27 ~~~~~-A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~  104 (289)
                      +.... ...++.+|-..|.. |++++|...+..++.....      ...+|..+|.+|.+. +.+++..+.-.|..+-++
T Consensus       133 ~~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~  205 (895)
T KOG2076|consen  133 SKLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK  205 (895)
T ss_pred             cccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            34444 55666776666655 9999999999999877543      256899999999887 999999999888877664


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      ..      ..|..++....++|++++|+-+|.+|+..-+..      -..+.+-+.+|.++|++..|+..|.++..... 
T Consensus       206 d~------e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-  272 (895)
T KOG2076|consen  206 DY------ELWKRLADLSEQLGNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDP-  272 (895)
T ss_pred             Ch------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence            44      489999999999999999999999999986553      24567788999999999999999999974332 


Q ss_pred             ccccccchhh-HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992          185 NNLLKYGVKG-HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS  241 (289)
Q Consensus       185 ~~~~~~~~~~-~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a  241 (289)
                        +..+.-.. .-......+...++.+.|.+.++.+......-..-....++..|...
T Consensus       273 --~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~  328 (895)
T KOG2076|consen  273 --PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK  328 (895)
T ss_pred             --chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence              11111111 11123445566777789999999887743333233334444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.52  E-value=4.9e-07  Score=60.60  Aligned_cols=63  Identities=22%  Similarity=0.396  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIAR  180 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~  180 (289)
                      |..+..+|.++...|++++|+.+|.+|+++.+.      -..++.++|.++..+| ++++|++.|++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            568899999999999999999999999998654      2468999999999999 79999999999874

...

>PLN03077 Protein ECB2; Provisional

Probab=98.50  E-value=0.00021  Score=71.40  Aligned_cols=129  Identities=5%  Similarity=0.040  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhccccccchh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS-LNNNLLKYGVK  193 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~  193 (289)
                      |+.+...|...|+.++|++.|++..+.    |-.+.. .++..+-..+...|.+++|.++|++..... ..+      ..
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P------~~  625 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVES----GVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP------NL  625 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC------ch
Confidence            455555566666667766666665432    111111 234455556666777777777777664221 111      11


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccC
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMT  261 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~  261 (289)
                      ..|..++.++...|+.++|.+.+++. .+.      +.......|+.++. .++.+..+.+.+..-.+.
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~------pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~  687 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PIT------PDPAVWGALLNACRIHRHVELGELAAQHIFELD  687 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence            23444555566677777777776552 111      12234455666664 566665555554433333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.50  E-value=1.4e-06  Score=60.83  Aligned_cols=81  Identities=17%  Similarity=0.255  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++++|+.+++++++..+.  ++  ....+..+|.++...|++++|+..+++ ..+.+.      ...+...+|.++..+|
T Consensus         4 ~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLG   72 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhC
Confidence            688999999999988775  22  444777799999999999999999998 444332      1346667799999999


Q ss_pred             CHHHHHHHHHHH
Q 022992          167 QYHKSIEIYEEI  178 (289)
Q Consensus       167 ~~~~A~~~~~~a  178 (289)
                      +|++|++.|+++
T Consensus        73 ~y~eAi~~l~~~   84 (84)
T PF12895_consen   73 KYEEAIKALEKA   84 (84)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC
Confidence            999999999874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.50  E-value=1.4e-06  Score=66.53  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      ...+...|.++... ++++|++++++++.+.+..      ...+..+|.++...|++++|+.+|++++.+.+..      
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------   84 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------   84 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence            35567777777666 9999999999998876543      4588999999999999999999999999986543      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ...+..+|.++...|++++|+..|++++...
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3577899999999999999999999997543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=4e-06  Score=73.64  Aligned_cols=140  Identities=15%  Similarity=0.211  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..|.....-|..|.+.|++..|+..|++|+..+....+.         .....++.|++.++.++++|.+|++..++++.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            355567777888888899999999999999987743221         22335889999999999999999999999984


Q ss_pred             HHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHcccCHHHHHHHHHh
Q 022992          181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-GTREYRLLSDIAASMDEEDIAKFTDVVKE  256 (289)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~~~e~~~l~~l~~a~~~~d~~~~~~al~~  256 (289)
                      ...       +...++++-|.+++..|+++.|+..|++++++.|.-. -..|-..+..-...+...+.+.|......
T Consensus       286 ~~~-------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  286 LDP-------NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             cCC-------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            432       2234678889999999999999999999999988753 22334444444444444445555555544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.49  E-value=1.1e-06  Score=78.58  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=51.7

Q ss_pred             HccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      +...++++|+++|++|+.+.+..      +.++.++|.++..+|++++|+..+++|+.+.+..      ..++..+|.++
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~   80 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTAC   80 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHH
Confidence            33346666666666666654432      2356666666666666666666666666664432      23566666666


Q ss_pred             HHhcCHHHHHHHHHHHHH
Q 022992          163 AELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~  180 (289)
                      ..+|+|++|+..|++++.
T Consensus        81 ~~lg~~~eA~~~~~~al~   98 (356)
T PLN03088         81 MKLEEYQTAKAALEKGAS   98 (356)
T ss_pred             HHhCCHHHHHHHHHHHHH
Confidence            666666666666666653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.47  E-value=5.2e-06  Score=81.36  Aligned_cols=186  Identities=11%  Similarity=0.082  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +......+..+...++.++++.|++.|++++...+...-      ....+..++...|+.++|+.++++++  .+...  
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~--  100 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI--  100 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC--
Confidence            334445667767777888999999999999988775421      12266666667799999999999998  22222  


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG  228 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~  228 (289)
                        ....+..+|.++...|+|++|++.|++++...+.+       ...+..++.++...++.++|...++++...+|.   
T Consensus       101 --~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---  168 (822)
T PRK14574        101 --SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTN-------PDLISGMIMTQADAGRGGVVLKQATELAERDPT---  168 (822)
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---
Confidence              12345566889999999999999999998654332       233444567778889999998888887766555   


Q ss_pred             chHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992          229 TREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       229 ~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~  282 (289)
                      .....     +.++. .+ .....+|+..|..+...+|.+...+.+....|..-+
T Consensus       169 ~~~~l-----~layL~~~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        169 VQNYM-----TLSYLNRA-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             hHHHH-----HHHHHHHh-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            22222     22222 12 333434888888888888998888877776665443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.47  E-value=2.2e-06  Score=76.55  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      +...|......|++++|+.+|.+|+++.+..      ..++.++|.++..+|++++|+..+++++....       ....
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~   71 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAK   71 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHH
Confidence            4555666667799999999999999986643      35789999999999999999999999985432       1234


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .++++|.++...|++..|...|++++.++|...
T Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            577889999999999999999999999887754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.45  E-value=4.3e-06  Score=61.90  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      ..+...|..+... ++++|++.|.+++..++..   .....++..+|.++...|++++|+.+|++++..++...   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence            3556667777555 8999999999998765432   22356788899999999999999999999998775432   123


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .++..+|.++..+|++++|+.+|++++...
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            568899999999999999999999987543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.45  E-value=1.5e-06  Score=60.42  Aligned_cols=93  Identities=22%  Similarity=0.304  Sum_probs=75.1

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      ++..+|.++... ++++|+.++++++...+...      .++..+|.++...+++++|+.+|++++.+.+...      .
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence            345566666555 88999999998888765432      5788899999998999999999999998765533      5


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ++..+|.++...|++++|..++.++.
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            78899999999999999999998875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.44  E-value=2.7e-06  Score=59.40  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=62.6

Q ss_pred             cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      .|++++|+.+|++.++..+..  +  ...++..+|.++..+|+|++|+.++++ ....  .     .........|.|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~-----~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--P-----SNPDIHYLLARCLL   69 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--H-----CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--C-----CCHHHHHHHHHHHH
Confidence            489999999999999987642  1  345778899999999999999999988 3111  1     11223344589999


Q ss_pred             ccCCHHHHHHHHHHH
Q 022992          205 CKGDVVAITNALERY  219 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~  219 (289)
                      .+|++++|+++|+++
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999874

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=9.4e-06  Score=68.65  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      ..|..+..=|+-..+. +|.+|+..|.+|+.+-+.+      +-.+-+-|-+|.++|.++.|++-++.|+.+.+.     
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-----  147 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-----  147 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-----
Confidence            4455566666666555 9999999999999997754      347888899999999999999999999998653     


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                       -...|..+|.+|..+|+|.+|++.|++++.....+
T Consensus       148 -yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  148 -YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN  182 (304)
T ss_pred             -HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence             34689999999999999999999999998655443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.5e-06  Score=72.76  Aligned_cols=129  Identities=12%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHH-------HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLE--SKH-------EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~-------~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      -|+.|.+.|+|..|..-|.+|+.....-.  +..       --..++.|++.||.+. ++.+|+.++.+++++-+.+-  
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--  291 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV--  291 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--
Confidence            35555555556666666665555543111  110       0134788999999888 99999999999999866544  


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIA  179 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~  179 (289)
                          ++|..-|.++...|+++.|+..|++|+++.+.+.      .+...|..+..+..++.+. -+.|....
T Consensus       292 ----KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk------a~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  292 ----KALYRRGQALLALGEYDLARDDFQKALKLEPSNK------AARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             ----hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                4899999999999999999999999999987653      3455666666655555443 55676664

>TIGR00540 hemY_coli hemY protein

Probab=98.43  E-value=0.00012  Score=66.76  Aligned_cols=224  Identities=13%  Similarity=0.061  Sum_probs=118.4

Q ss_pred             HHHHHhhc-cC-CCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           13 KKAEKKLN-GW-GLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY   76 (289)
Q Consensus        13 ~~A~~~~k-~~-~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~   76 (289)
                      ++|.+.+. |. .++.|||..|.+...++              +.+....|+++.|..++.++.+.....+-   .  ..
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---~--~~  156 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---L--VE  156 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---H--HH
Confidence            34444443 42 23447777777776665              34455678888888888887655432211   1  11


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC---------
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE---------  146 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~---------  146 (289)
                      ...+.++... +++.|...+++..+..+++..      ++..++.++...|++++|.+.+.+..+.-...+         
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~------~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~  230 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKE------VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK  230 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            1124444444 788888888887777654443      677777777777887777777666654311000         


Q ss_pred             ------------------------cc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992          147 ------------------------VT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA  199 (289)
Q Consensus       147 ------------------------~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  199 (289)
                                              .+   +........++..+...|++++|.+.+++++....++   . ......+ .
T Consensus       231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~-~~~~~~l-~  305 (409)
T TIGR00540       231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---R-AISLPLC-L  305 (409)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---c-cchhHHH-H
Confidence                                    00   0123344555556666677777777777666432211   0 0000011 1


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHH
Q 022992          200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVK  255 (289)
Q Consensus       200 ~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~  255 (289)
                      ....+..++...+.+.++++++..|.   +.++.++..++..+ ..|+.+.-.+.++
T Consensus       306 ~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le  359 (409)
T TIGR00540       306 PIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFK  359 (409)
T ss_pred             HhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            22233345666666666666654433   22234455555543 3554444333333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.43  E-value=6.5e-05  Score=63.48  Aligned_cols=176  Identities=14%  Similarity=0.093  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      ...|..+-..+...++++|++.|++.+..++..   ..+..+...+|.++...+++++|+..|++.++.++....   +.
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~  106 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID  106 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hH
Confidence            335555555556669999999999999988744   355666889999999999999999999999999987653   45


Q ss_pred             HHHHHHHHHHHHhc------------------CHHHHHHHHHHHHHHHhhccccc----------cchhhHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELE------------------QYHKSIEIYEEIARQSLNNNLLK----------YGVKGHLLNAGICQL  204 (289)
Q Consensus       153 ~~~~~l~~~~~~~g------------------~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~~~~l  204 (289)
                      .++..+|.++..++                  ...+|+..|++.+...++.....          -.....-+.++.-|.
T Consensus       107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~  186 (243)
T PRK10866        107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT  186 (243)
T ss_pred             HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788887654333                  23578888888875543321100          000111123555677


Q ss_pred             ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992          205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKE  256 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~  256 (289)
                      ..|.+..|...++..++-.|......|+  +.-+..++. .|..+.....++.
T Consensus       187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~ea--l~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        187 KRGAYVAVVNRVEQMLRDYPDTQATRDA--LPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HcCchHHHHHHHHHHHHHCCCCchHHHH--HHHHHHHHHHcCChHHHHHHHHH
Confidence            8899999999998888766665555554  556778874 7777776665544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.42  E-value=4.4e-06  Score=69.27  Aligned_cols=154  Identities=12%  Similarity=0.047  Sum_probs=114.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (289)
Q Consensus        38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~-~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~  116 (289)
                      +.++.+...|+-+.+..+..+++..+....      ..+...|... +..++..|+..+++|..+-+..+.      .++
T Consensus        71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~------~~~  138 (257)
T COG5010          71 KLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE------AWN  138 (257)
T ss_pred             HHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh------hhh
Confidence            445556667777777777666665543321      1122244444 444999999999999999887665      999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      .+|.+|.+.|+.+.|..-|.+|++++....      .+.+|+|..+...|+++.|..++.++......++       ...
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-------~v~  205 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEP------SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-------RVR  205 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-------HHH
Confidence            999999999999999999999999987654      5789999999999999999999999863322111       123


Q ss_pred             HHHHHHHHccCCHHHHHHHH
Q 022992          197 LNAGICQLCKGDVVAITNAL  216 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~  216 (289)
                      .++.++.-..||+..|.+..
T Consensus       206 ~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         206 QNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHhhcCChHHHHhhc
Confidence            45667777889988876654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.42  E-value=5.3e-05  Score=62.25  Aligned_cols=169  Identities=18%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      .+|..+.. +...|+|.+|+..|.+....+....   -+..+...+|.++... ++++|+..+++-+..++....   +.
T Consensus         7 ~lY~~a~~-~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~   79 (203)
T PF13525_consen    7 ALYQKALE-ALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---AD   79 (203)
T ss_dssp             HHHHHHHH-HHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HH
T ss_pred             HHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hh
Confidence            34444444 4467888888888888888776433   2344566778888666 999999999999999987665   44


Q ss_pred             HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhcCHHH
Q 022992          113 RYYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus       113 ~~l~~la~~~~~~-----------g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~  170 (289)
                      .++..+|.++...           +...+|+..|+.-+..|+...-...+           +.--..+|..|.+.|.|..
T Consensus        80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen   80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred             hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            5566666664332           34568999999999999876543222           1223456778899999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH
Q 022992          171 SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT  213 (289)
Q Consensus       171 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~  213 (289)
                      |+..|+.++....+.+    ....++..++.++...|+...|.
T Consensus       160 A~~r~~~v~~~yp~t~----~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTP----AAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHCCCCc----hHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999986654432    23345667778888888876443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.42  E-value=6.6e-05  Score=73.49  Aligned_cols=140  Identities=13%  Similarity=0.058  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992           26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD  104 (289)
Q Consensus        26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~  104 (289)
                      .|.+.+|+.   +....|...+++++++.....+++....      ....|.-.|.++.+. +++++...  +++.++..
T Consensus        27 ~p~n~~a~~---~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         27 SLSKFKELD---DLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             CcchHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence            455555554   6777888899999999998877665432      122333334444333 33333333  33333333


Q ss_pred             cC-------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992          105 IG-------------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus       105 ~g-------------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      ..             +....-.++..+|.||..+|+.++|...|++++++.+.+      +.+++++|..|... +.++|
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHH
Confidence            22             222333589999999999999999999999999987433      36899999999999 99999


Q ss_pred             HHHHHHHHHHHh
Q 022992          172 IEIYEEIARQSL  183 (289)
Q Consensus       172 ~~~~~~a~~~~~  183 (289)
                      .+++.+++.+..
T Consensus       169 ~~m~~KAV~~~i  180 (906)
T PRK14720        169 ITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHH
Confidence            999999975543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.42  E-value=9.3e-05  Score=60.80  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK   69 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   69 (289)
                      .+..++.+|...+..     |+|.+|+..|...                 +.++...|++++|+..|.+.+..+......
T Consensus         4 ~~~~lY~~a~~~~~~-----g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~   78 (203)
T PF13525_consen    4 TAEALYQKALEALQQ-----GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA   78 (203)
T ss_dssp             -HHHHHHHHHHHHHC-----T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred             CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            688899999999884     6899999999887                 566788999999999999999998865543


Q ss_pred             HHHHHHHHHHHHHHc-----------cC-CHHHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHhcC
Q 022992           70 HEAAQAYVDAAHCYK-----------KT-SSNEAISCLEQAVNMFCDIGRLSM-----------AARYYKEIAELYESEH  126 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~-----------~~-~~~~A~~~~~~A~~~~~~~g~~~~-----------~a~~l~~la~~~~~~g  126 (289)
                         ..++...|.++.           .. ...+|+..++..+..|+...-...           .+.--..+|..|...|
T Consensus        79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~  155 (203)
T PF13525_consen   79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG  155 (203)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence               234444444432           12 457899999999999987765433           3444556789999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      .+..|+..|+..++-|+...   ....++..++..+..+|..+.|
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTP---AAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHH
Confidence            99999999999999998654   3556889999999999988744

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.42  E-value=2.9e-05  Score=70.58  Aligned_cols=158  Identities=9%  Similarity=0.062  Sum_probs=100.9

Q ss_pred             HHHHHHhhc-cCC-CCCCCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           12 EKKAEKKLN-GWG-LFGSKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        12 ~~~A~~~~k-~~~-~~~~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      .++|.+.+. |.. ++.|||++|.....++..              .-...|+++.|..++.++.+..+...    .+..
T Consensus        81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~  156 (398)
T PRK10747         81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVE  156 (398)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHH
Confidence            344444444 432 345888888877776533              23568888999999888876533211    1111


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---------
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE---------  145 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~---------  145 (289)
                       ...+.++... ++++|+..++++.+..+++..      ++.-++.+|...|++++|++.+.+........         
T Consensus       157 -l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~------al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~  229 (398)
T PRK10747        157 -ITRVRIQLARNENHAARHGVDKLLEVAPRHPE------VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ  229 (398)
T ss_pred             -HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             1235666554 999999999999888765543      67777788888888888886666555321100         


Q ss_pred             --------------C-------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          146 --------------E-------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       146 --------------~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                                    +             ..+....+...++..+...|+.++|.+..+++..
T Consensus       230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence                          0             0011223556677888889999999999988863

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.41  E-value=7.2e-06  Score=69.92  Aligned_cols=106  Identities=9%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          113 RYYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       113 ~~l~~la~~~-~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      ......|..+ ...|++++|+..|++.+..++...   ....++.++|.+|...|+|++|+..|++++....+.+    .
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~----~  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP----K  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----c
Confidence            4455555544 445999999999999999998753   3446889999999999999999999999986544332    3


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ...+++++|.++...|+...|...|+......|.
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            4567888999999999999999999998876655

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.41  E-value=0.00013  Score=73.57  Aligned_cols=95  Identities=7%  Similarity=0.076  Sum_probs=41.4

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      +|..+...|-+. ++++|.+.|++..+.-.     ..-..+++.+...|.+.|++++|+..|.+..+.    |-.+. ..
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi-----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD-~~  650 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNI-----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPD-EV  650 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HH
Confidence            333444444333 56666666555432210     001123444444455555555555555544321    11111 12


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ++..+...+.+.|++++|.+++.+..
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~  676 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDAR  676 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            34444455555555555555555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.40  E-value=0.00021  Score=72.22  Aligned_cols=173  Identities=10%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CH
Q 022992           27 SKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SS   88 (289)
Q Consensus        27 ~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~   88 (289)
                      |++++|.+.|...                 ...|...|++++|...|.++.+.    |- ..-...|+.+...|.+. ++
T Consensus       556 G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCH
Confidence            5666666666554                 23456677777777777665443    10 01123555556666544 77


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992           89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (289)
Q Consensus        89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (289)
                      ++|+..|.+....-.   .+.  ..++..+...+...|++++|.+.+.+..+.    |-... ..+++.+...|.+.|++
T Consensus       631 deAl~lf~eM~~~Gv---~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G~~pd-~~tynsLI~ay~k~G~~  700 (1060)
T PLN03218        631 DFALSIYDDMKKKGV---KPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQ----GIKLG-TVSYSSLMGACSNAKNW  700 (1060)
T ss_pred             HHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCH
Confidence            777777665543211   111  235555556666666666666666665432    11111 13556666666666666


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992          169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQ  220 (289)
Q Consensus       169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~  220 (289)
                      ++|.++|++........      ....|..+...|...|+.++|.+.|++..
T Consensus       701 eeA~~lf~eM~~~g~~P------dvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        701 KKALELYEDIKSIKLRP------TVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66666666654221111      11123344444555666666666666543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.38  E-value=0.00021  Score=69.81  Aligned_cols=212  Identities=12%  Similarity=0.117  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHH
Q 022992           27 SKYEDAADLFDKA-----------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISC   94 (289)
Q Consensus        27 ~~~~~A~~~~~~A-----------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~   94 (289)
                      |++++|...|+..           ...|...|++++|...|.+..+.    |-.. -..+|..+..++.+. ++++|.+.
T Consensus       273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~i  347 (697)
T PLN03081        273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSI-DQFTFSIMIRIFSRLALLEHAKQA  347 (697)
T ss_pred             CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhccchHHHHHH
Confidence            7777777777642           45577788888888888776432    1110 122455555555444 66666666


Q ss_pred             HHHHH---------------HHHHhcCCHHHHHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           95 LEQAV---------------NMFCDIGRLSMAAR-----------YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        95 ~~~A~---------------~~~~~~g~~~~~a~-----------~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +....               +.|.+.|+...+-.           +|+.+...|...|+.++|++.|++..+.    |-.
T Consensus       348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~  423 (697)
T PLN03081        348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GVA  423 (697)
T ss_pred             HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence            55443               33444454444433           3556666677777777777777776542    222


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG  228 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~  228 (289)
                      +.. .++..+...+...|.+++|.++|+.......-.     .....|..++.++...|+.++|.+.+++.    + +  
T Consensus       424 Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~-----p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~-~--  490 (697)
T PLN03081        424 PNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-----PRAMHYACMIELLGREGLLDEAYAMIRRA----P-F--  490 (697)
T ss_pred             CCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC-----CCccchHhHHHHHHhcCCHHHHHHHHHHC----C-C--
Confidence            221 346666677777778888888777765321000     11122344555566678888887776542    1 1  


Q ss_pred             chHHHHHHHHHHHHc-ccCHHHHHHHHHhcccc
Q 022992          229 TREYRLLSDIAASMD-EEDIAKFTDVVKEFDSM  260 (289)
Q Consensus       229 ~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~  260 (289)
                      .+...+...|+.++. .|+.+....+.+..-.+
T Consensus       491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~  523 (697)
T PLN03081        491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGM  523 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence            112244566777774 77776666665553333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.3e-05  Score=70.44  Aligned_cols=128  Identities=14%  Similarity=0.130  Sum_probs=102.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRL------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~  160 (289)
                      +.+.|+.+|++++.+-+...+.      ...-..+.+-|.-..+.|++..|.++|..|+.+.+..  ....+.++.+.+.
T Consensus       218 ~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~  295 (486)
T KOG0550|consen  218 NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRAL  295 (486)
T ss_pred             chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHh
Confidence            8899999999999887765432      2234455566888788899999999999999998863  3445678999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          161 YAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       161 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      +...+|+..+|+.-.+.++...  .     .-...+...+.||+..++++.|++.|+++.+..
T Consensus       296 v~~rLgrl~eaisdc~~Al~iD--~-----syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  296 VNIRLGRLREAISDCNEALKID--S-----SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hhcccCCchhhhhhhhhhhhcC--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999997432  1     223457778999999999999999999987644

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.36  E-value=2.9e-06  Score=56.73  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCC
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDP  224 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~  224 (289)
                      +.++..+|.++...|+|++|+.+|++++....       .....++++|.|+..+| ++.+|...++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999985532       22346889999999999 79999999999998775

...

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.35  E-value=0.00011  Score=71.81  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Q 022992           27 SKYEDAADLFDKA-----------ANSFKLAKSWDKAGATYVKLA   60 (289)
Q Consensus        27 ~~~~~A~~~~~~A-----------~~~~~~~g~~~~A~~~~~~a~   60 (289)
                      |+++.|...|+..           ...|...|++++|...|.+..
T Consensus       172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~  216 (697)
T PLN03081        172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW  216 (697)
T ss_pred             CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            6667777665542           345666777777777777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.33  E-value=6.9e-06  Score=70.03  Aligned_cols=107  Identities=7%  Similarity=0.045  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      -..|..|-..+...|+|++|+..|.+.+..|....   -+..++..+|.+|... ++++|+.+|++++..|+...   ..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---KA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---ch
Confidence            44566666665566788888888888877776432   1234556677777555 77777777777777776543   35


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      ..++.++|.++...|++++|+..|++.++.|+..
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            5567777777777777777777777777777653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.32  E-value=4.5e-05  Score=65.77  Aligned_cols=182  Identities=12%  Similarity=0.042  Sum_probs=112.8

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      +.+..|...|..|              +.+|...|+-.-|+.-+.+.+++     .++..+.-..+ |.++.+. .+++|
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpDF~~ARiQR-g~vllK~Gele~A  125 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPDFMAARIQR-GVVLLKQGELEQA  125 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----CccHHHHHHHh-chhhhhcccHHHH
Confidence            5556666666555              33444555555555555555544     12222222222 4444443 88888


Q ss_pred             HHHHHHHHHHHHhcCCHHHH---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMA---------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~---------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      ..=|.+.+.--+.+|....+         -..+......+.-.|+...||++..+.+++.+      +.+..+..-+.+|
T Consensus       126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~------Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP------WDASLRQARAKCY  199 (504)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc------chhHHHHHHHHHH
Confidence            88888887766655533221         11222223333334889999999888888743      4556677778899


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      +..|+...||.-...+.....       ...+.++.+...+...||........++.+.++|.+.
T Consensus       200 i~~~e~k~AI~Dlk~askLs~-------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQ-------DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            999999999998887753221       1224467777777778888888888888888888764

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=98.31  E-value=0.0003  Score=60.04  Aligned_cols=221  Identities=12%  Similarity=0.081  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHh
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCD  104 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~  104 (289)
                      ++|++|+++....+..+...|++..|.+.-.-.++++.+.+.+.... ...++..++...  .-.+-..+..+|+.-...
T Consensus         4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~   82 (260)
T PF04190_consen    4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKF   82 (260)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence            58999999999999999999999999999999999998876544332 335666666544  222345555566655544


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      .+.+.+-......+|..+.+.+++.+|..||-.+       +++..  .....+-......|.-.+              
T Consensus        83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-------~~~~~--~~~~~ll~~~~~~~~~~e--------------  139 (260)
T PF04190_consen   83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-------TDPSA--FAYVMLLEEWSTKGYPSE--------------  139 (260)
T ss_dssp             SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--------HHHH--HHHHHHHHHHHHHTSS----------------
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-------CChhH--HHHHHHHHHHHHhcCCcc--------------
Confidence            4556677788888888888888888777777322       11100  001011111111121111              


Q ss_pred             ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCCC--------CCchHHHHHHHHHHHHcccCHHHHHH
Q 022992          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM----DPTF--------SGTREYRLLSDIAASMDEEDIAKFTD  252 (289)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~----~~~~--------~~~~e~~~l~~l~~a~~~~d~~~~~~  252 (289)
                             ..-+..++.+.+++.++...|...+..+++.    .|.+        ...+--.++.-|+.+++.++.+.|..
T Consensus       140 -------~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~  212 (260)
T PF04190_consen  140 -------ADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKK  212 (260)
T ss_dssp             -------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHH
T ss_pred             -------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHH
Confidence                   1123345667788999999999999888765    3332        23455678888889998889999999


Q ss_pred             HHHhccccCCCchhHHHHHHHHHHhc
Q 022992          253 VVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       253 al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      ..+.|...-.-||.....+.+|.+..
T Consensus       213 L~~~Y~~~L~rd~~~~~~L~~IG~~y  238 (260)
T PF04190_consen  213 LCEKYKPSLKRDPSFKEYLDKIGQLY  238 (260)
T ss_dssp             HHHHTHH---HHHHTHHHHHHHHHHH
T ss_pred             HHHHhCccccccHHHHHHHHHHHHHH
Confidence            99999997666899999999998753

; PDB: 3LKU_E 2WPV_G.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.30  E-value=2.6e-05  Score=58.23  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      +++.+.|.++...|+.++|+.+|++|++.-  . +......++..+|..+..+|++++|+..+++......+++.   ..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cH
Confidence            467788999999999999999999998742  1 12234468889999999999999999999988754333211   11


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                      . ...-.+++....|+..+|...+-..
T Consensus        76 ~-l~~f~Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   76 A-LRVFLALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             H-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            1 1122345666778888777666544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.26  E-value=2.6e-06  Score=56.32  Aligned_cols=60  Identities=13%  Similarity=0.206  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .+|..+...|++++|+..|+++++..+.      ...++..+|.++..+|++++|+..|++++...
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4688888889999999999999987754      45789999999999999999999999998554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.25  E-value=4.5e-05  Score=56.92  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      +..+.|.++... +.++|+.+|++|++.-.   +.....+++..+|..+..+|++++|+..+++++.-++....   ...
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGL---SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHH
Confidence            445667777665 99999999999987421   22345679999999999999999999999999987765332   223


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ...-++.++...|++++|++.+-.++
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34457788999999999999987775

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.22  E-value=3.4e-05  Score=57.46  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      ..+.+..-|+.+.+.|+.+.|++.|.+|+.+.++.      +.+|++-+..+...|+.++|+.-+++++...  .+..+ 
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLa--g~~tr-  112 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELA--GDQTR-  112 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhc--Cccch-
Confidence            34466677888888899999999999999998764      3589999999999999999999999998443  22211 


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .....+...|++|..+|+-+.|+.-|+.+.++...|.
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            2334566778899999999999999999888776664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.00023  Score=62.92  Aligned_cols=182  Identities=10%  Similarity=0.045  Sum_probs=113.9

Q ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992           80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (289)
Q Consensus        80 a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~  159 (289)
                      ...|...++..|+.+-++++..-.++-.      .+..-|..+...+++++|+-.|+.|..+.+-      .-++|..+-
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~------alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~  375 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHE------ALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLF  375 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccch------HHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHH
Confidence            3344444888999999999888665543      7777888899999999999999999887642      236888888


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHH---------hh------ccccccchh--------------hHHHHHHHHHHccCCHH
Q 022992          160 QYAAELEQYHKSIEIYEEIARQS---------LN------NNLLKYGVK--------------GHLLNAGICQLCKGDVV  210 (289)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~a~~~~---------~~------~~~~~~~~~--------------~~~~~~~~~~l~~gd~~  210 (289)
                      .+|...|++.+|.-.-+.+....         ++      ++..+-.++              .+...++..+...|...
T Consensus       376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~  455 (564)
T KOG1174|consen  376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK  455 (564)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence            99999999999887666654211         00      000000000              11112223344456666


Q ss_pred             HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHH---HHHHHHhcccc
Q 022992          211 AITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTL---LLRVKEKLKAK  281 (289)
Q Consensus       211 ~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~---~~~~~~~~~~~  281 (289)
                      .++..+++++...+.      +.+.+.|++-+..  ...+++++..|...-++||.+...   +.++.+...++
T Consensus       456 D~i~LLe~~L~~~~D------~~LH~~Lgd~~~A--~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~  521 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPD------VNLHNHLGDIMRA--QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES  521 (564)
T ss_pred             hHHHHHHHHHhhccc------cHHHHHHHHHHHH--hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence            666777766654332      2233334443321  245778888888888889888754   34555555533

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.00024  Score=59.13  Aligned_cols=146  Identities=12%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      +-+.+..+..+++..++...      ..+...|......|++..|+..+++|..+-+.+.      +.++.+|.+|-+.|
T Consensus        81 ~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~lgaaldq~G  148 (257)
T COG5010          81 DADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNLLGAALDQLG  148 (257)
T ss_pred             cccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhHHHHHHHHcc
Confidence            55555555555544443322      2444588888888999999999999999877654      57899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-cc
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EE  245 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~  245 (289)
                      ++++|-..|.++......       ......|+|..++..||...|+..+..+...-     .....+..+|..+.. .|
T Consensus       149 r~~~Ar~ay~qAl~L~~~-------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~ad~~v~~NLAl~~~~~g  216 (257)
T COG5010         149 RFDEARRAYRQALELAPN-------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----AADSRVRQNLALVVGLQG  216 (257)
T ss_pred             ChhHHHHHHHHHHHhccC-------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHhhcC
Confidence            999999999999854322       23456789999999999999999998875421     112245556665553 67


Q ss_pred             CHHHHHHHHHh
Q 022992          246 DIAKFTDVVKE  256 (289)
Q Consensus       246 d~~~~~~al~~  256 (289)
                      |++..+.....
T Consensus       217 ~~~~A~~i~~~  227 (257)
T COG5010         217 DFREAEDIAVQ  227 (257)
T ss_pred             ChHHHHhhccc
Confidence            76665554433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.16  E-value=4e-05  Score=73.99  Aligned_cols=137  Identities=16%  Similarity=0.220  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHH
Q 022992           28 KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAI   92 (289)
Q Consensus        28 ~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~   92 (289)
                      |...|-.||.+|              +..|....+|+.|.....++.+....    ......+...|..|.+. +...|+
T Consensus       507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a----~~~k~nW~~rG~yyLea~n~h~aV  582 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA----FACKENWVQRGPYYLEAHNLHGAV  582 (1238)
T ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH----HHHHhhhhhccccccCccchhhHH
Confidence            445566666665              34566666777776664444443221    12223444567777666 889999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992           93 SCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus        93 ~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      ..++-|+.+.++.-+      +|..+|.+|-..|++..|++.|.+|..+-+..      .-.....+.+...+|+|.+|+
T Consensus       583 ~~fQsALR~dPkD~n------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  583 CEFQSALRTDPKDYN------LWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             HHHHHHhcCCchhHH------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhhHHHHH
Confidence            999999988876554      99999999999999999999999998875532      134577888899999999999


Q ss_pred             HHHHHHHH
Q 022992          173 EIYEEIAR  180 (289)
Q Consensus       173 ~~~~~a~~  180 (289)
                      ..++.++.
T Consensus       651 d~l~~ii~  658 (1238)
T KOG1127|consen  651 DALGLIIY  658 (1238)
T ss_pred             HHHHHHHH
Confidence            99998873

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.16  E-value=0.00017  Score=66.79  Aligned_cols=165  Identities=11%  Similarity=0.150  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      ..+|.++..+| ..++|.+.+.+....+.-+.+.|+      ++.-.|...-.. +.++|.++.+.++....+.+=    
T Consensus         8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----   76 (700)
T KOG1156|consen    8 NALFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----   76 (700)
T ss_pred             HHHHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch------hHHhccchhhcccchHHHHHHHHHHhccCcccch----
Confidence            34677777777 456888888888888875555544      222334433333 889999999998886555544    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                        ||.-+|.++....+|++||.+|+.|+.+-+.+      .+++..++.+...+++|+.....-.+.+...+       +
T Consensus        77 --CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-------~  141 (700)
T KOG1156|consen   77 --CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-------S  141 (700)
T ss_pred             --hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-------h
Confidence              99999999999999999999999999885543      26889999999999999998877666553322       2


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      ....|+..++.+...|++..|...++.+.+..
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            23345666677778899999988888886644

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.15  E-value=0.0011  Score=60.31  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHhcC
Q 022992           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC-YKKTSSNEAISCLEQAVNMFCDIG  106 (289)
Q Consensus        28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~-~~~~~~~~A~~~~~~A~~~~~~~g  106 (289)
                      +...+-..+.+. ......|+|++|.....++.+.    .+  .....+..++.+ ....+++.|.+++.+|.+..+...
T Consensus        80 r~~~~~~~~~~g-l~a~~eGd~~~A~k~l~~~~~~----~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~  152 (398)
T PRK10747         80 KRRRARKQTEQA-LLKLAEGDYQQVEKLMTRNADH----AE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ  152 (398)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhc----cc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch
Confidence            334444444444 3444579999998666654443    11  124456666777 455599999999999986544332


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      -    + .....+.++...|++++|+..+++..+..+...      .++..++.+|...|++++|++.+.+..
T Consensus       153 ~----~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~al~ll~~~~~~~gdw~~a~~~l~~l~  214 (398)
T PRK10747        153 L----P-VEITRVRIQLARNENHAARHGVDKLLEVAPRHP------EVLRLAEQAYIRTGAWSSLLDILPSMA  214 (398)
T ss_pred             H----H-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            1    1 222337888888999999999999988876542      578889999999999999998777664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.14  E-value=8.5e-05  Score=71.82  Aligned_cols=158  Identities=17%  Similarity=0.284  Sum_probs=109.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      +...|...+-+|+.+..      ..|.++.-+|.+|...-+...|..+|.+|.++...+      .....-+++.|....
T Consensus       473 ~~~~al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd------aeaaaa~adtyae~~  540 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD------AEAAAASADTYAEES  540 (1238)
T ss_pred             hHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhccc
Confidence            55666777777766644      356688889999988788889999999998875532      234566788889999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED  246 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d  246 (289)
                      +++.|..+.-.+.....     ....+..+...|..|+..++..+|+.-|+.++.++|.     ....-..|+.+|-.  
T Consensus       541 ~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-----D~n~W~gLGeAY~~--  608 (1238)
T KOG1127|consen  541 TWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-----DYNLWLGLGEAYPE--  608 (1238)
T ss_pred             cHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-----hHHHHHHHHHHHHh--
Confidence            99999888554432211     1223344556788888888888888888888877664     23445667887742  


Q ss_pred             HHHHHHHHHhccccCCCchhHH
Q 022992          247 IAKFTDVVKEFDSMTPLDPWKT  268 (289)
Q Consensus       247 ~~~~~~al~~~~~~~~~d~~~~  268 (289)
                      ...+..|++.|.....++|...
T Consensus       609 sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  609 SGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             cCceehHHHhhhhhHhcCcHhH
Confidence            2456678888877777766544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.13  E-value=9e-05  Score=55.25  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      ...++.-|....+. +++.|++.|.+|+.+.++.-+      +|+|-+..+.-+|+.++|++-+++|+++.-.  ....+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trta  114 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERAS------AYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTA  114 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------hhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHH
Confidence            33444445555555 999999999999999886554      8999999999999999999999999998543  34567


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ..++.+-|.+|..+|+-+.|..-|+.+.
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAA  142 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHH
Confidence            7889999999999999999999999886

>TIGR00540 hemY_coli hemY protein

Probab=98.11  E-value=0.0035  Score=57.24  Aligned_cols=225  Identities=12%  Similarity=0.027  Sum_probs=137.6

Q ss_pred             HhhHHHHHHHHHHhhccCC---C------C-CCCHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWG---L------F-GSKYEDAADLFDKAA---------------NSFKLAKSWDKAGATYVKL   59 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~---~------~-~~~~~~A~~~~~~A~---------------~~~~~~g~~~~A~~~~~~a   59 (289)
                      .+.|++.+.++.+....+.   +      . .|+++.|.+.+.++.               .++...|+++.|...+.+.
T Consensus       100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l  179 (409)
T TIGR00540       100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKL  179 (409)
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4567777766655543211   1      1 288888888888863               2334478999999888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH---------------H---Hhc---------------
Q 022992           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM---------------F---CDI---------------  105 (289)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~---------------~---~~~---------------  105 (289)
                      .+...+.      ..++.-++.++... ++++|.+.+.+....               +   ...               
T Consensus       180 ~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       180 LEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            7775432      12444555555444 666555555544422               0   000               


Q ss_pred             CCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          106 GRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       106 g~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ..+.   ........+|..+...|++++|...++++++..+......  -..+  ........++.+.+++.++++....
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLC--LPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHH--HHhhhcCCCChHHHHHHHHHHHHhC
Confidence            0111   2456667778888889999999999999999877542211  0112  2222344578899999999887543


Q ss_pred             hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH--HhhcCCCCCCchHHHHHHHHHHHH-cccCHHHH
Q 022992          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER--YQDMDPTFSGTREYRLLSDIAASM-DEEDIAKF  250 (289)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~--~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~  250 (289)
                      ++++     ....+..+|.++...|++++|++.|++  ..+..|.    .+.  ...++..+ ..|+.+..
T Consensus       330 p~~~-----~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~----~~~--~~~La~ll~~~g~~~~A  389 (409)
T TIGR00540       330 DDKP-----KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD----AND--LAMAADAFDQAGDKAEA  389 (409)
T ss_pred             CCCh-----hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC----HHH--HHHHHHHHHHcCCHHHH
Confidence            3221     113556788889999999999999995  4544432    222  33566655 36765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0026  Score=52.90  Aligned_cols=168  Identities=15%  Similarity=0.057  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      +..|++...+-.-.|+.+-|..|+.+...-+.....      ...--|..+.-. .+++|+++|+.-+     ..+|...
T Consensus        52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R------V~~lkam~lEa~~~~~~A~e~y~~lL-----~ddpt~~  120 (289)
T KOG3060|consen   52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR------VGKLKAMLLEATGNYKEAIEYYESLL-----EDDPTDT  120 (289)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh------HHHHHHHHHHHhhchhhHHHHHHHHh-----ccCcchh
Confidence            555666655555566666666666665555422111      111112233322 6667777766554     3455556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +-.-.+++.+... |+.-+||+....=++.|..+.      +++..++++|+..|+|++|+=+|++.+-..+-+      
T Consensus       121 v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~D~------EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n------  187 (289)
T KOG3060|consen  121 VIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMNDQ------EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN------  187 (289)
T ss_pred             HHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc------
Confidence            6666888877776 999999999999999998654      689999999999999999999999997332111      


Q ss_pred             hhhHHHHHHHHHHccC---CHHHHHHHHHHHhhcCCC
Q 022992          192 VKGHLLNAGICQLCKG---DVVAITNALERYQDMDPT  225 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~g---d~~~A~~~~~~~~~~~~~  225 (289)
                       .-++...+.++.-+|   +..-+++.|.+++++.+.
T Consensus       188 -~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  188 -PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence             123344454433333   566789999999998874

>PRK15331 chaperone protein SicA; Provisional

Probab=98.11  E-value=0.00045  Score=53.94  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      ...-..+...|--+...|++++|...|+-..-+..-      -.+.+..||.++..+++|++|+..|..+......++. 
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~-  106 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR-  106 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-
Confidence            334445556666666679999999999866654322      2357899999999999999999999999755544432 


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                            ..+.+|.|++..|+...|+.+|..+.+
T Consensus       107 ------p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        107 ------PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ------ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence                  246789999999999999999998876

>PLN03077 Protein ECB2; Provisional

Probab=98.07  E-value=0.0029  Score=63.37  Aligned_cols=95  Identities=4%  Similarity=0.050  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR  233 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~  233 (289)
                      +++.+...|...|+.++|+++|++.......+.      ...+..+...+...|++++|...|+...+... ..+..  .
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~~--~  626 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNL--K  626 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCch--H
Confidence            466777778888888888888888763322211      11123333445567888889888887653222 22222  2


Q ss_pred             HHHHHHHHH-cccCHHHHHHHHHhc
Q 022992          234 LLSDIAASM-DEEDIAKFTDVVKEF  257 (289)
Q Consensus       234 ~l~~l~~a~-~~~d~~~~~~al~~~  257 (289)
                      ...-+++++ ..|+++...+.++..
T Consensus       627 ~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        627 HYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            234455555 367766666666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.04  E-value=0.0013  Score=57.06  Aligned_cols=149  Identities=12%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc----hHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT----SANQCKQKVA--QYAAELEQYHKSIEIYEEIARQSLNNNL  187 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~----~~~~~~~~l~--~~~~~~g~~~~A~~~~~~a~~~~~~~~~  187 (289)
                      .+.+++.++...|+.+.++.-.+.++.+.+......    ....+...|-  .-.++.++|.++++.+++.+...+....
T Consensus       225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~  304 (504)
T KOG0624|consen  225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM  304 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence            455556665555666666666666655544322110    0000111111  1123446666666666666533222111


Q ss_pred             cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhH
Q 022992          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~  267 (289)
                      ..++   .+..+..|+...|.+.+|+....+.++++|.     ...++..-..|+-.  -+.+..|+.+|.....+++.+
T Consensus       305 ir~~---~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-----dv~~l~dRAeA~l~--dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  305 IRYN---GFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-----DVQVLCDRAEAYLG--DEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             eeee---eeheeeecccccCCHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhcCccc
Confidence            1111   1122345666778888898888888877655     23445555555532  367888888888888888887


Q ss_pred             HHHHH
Q 022992          268 TTLLL  272 (289)
Q Consensus       268 ~~~~~  272 (289)
                      +....
T Consensus       375 ~~~re  379 (504)
T KOG0624|consen  375 TRARE  379 (504)
T ss_pred             HHHHH
Confidence            75543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.0011  Score=63.23  Aligned_cols=192  Identities=17%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHHHHHh------c
Q 022992           27 SKYEDAADLFDKAA----------------------------------NSFKLAKSWDKAGATYVKLANCHLK------L   66 (289)
Q Consensus        27 ~~~~~A~~~~~~A~----------------------------------~~~~~~g~~~~A~~~~~~a~~~~~~------~   66 (289)
                      +|...|+++|++++                                  ......|+.+.|+.+|..|-+.|..      .
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q  951 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ  951 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence            67888888888873                                  2233578889999999888777642      2


Q ss_pred             CCHHHHHHHH---------HHHHHHHccC-CHHHHHHHHHHH------HHHHHhcCCHHHHHH--------HHHHHHHHH
Q 022992           67 ESKHEAAQAY---------VDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAAR--------YYKEIAELY  122 (289)
Q Consensus        67 ~~~~~aa~~~---------~~~a~~~~~~-~~~~A~~~~~~A------~~~~~~~g~~~~~a~--------~l~~la~~~  122 (289)
                      |....+++.-         ..+|..|... ++.+|+..|.+|      +.+.+.++-.+..+.        -+...|.+|
T Consensus       952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYy 1031 (1416)
T KOG3617|consen  952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYY 1031 (1416)
T ss_pred             cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHH
Confidence            3444333322         2345556555 889999998887      455555554443332        245667788


Q ss_pred             HhcC-CHHHHHHHHHHHHHHH------------------hccCccchHHHHHHHHHHHHHHhcCHHHHHHHH------HH
Q 022992          123 ESEH-NIEQTIVFFEKAADMF------------------QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY------EE  177 (289)
Q Consensus       123 ~~~g-~~~~A~~~y~~A~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~  177 (289)
                      ++.| ..+.|+.+|.+|--+.                  .++=++.+-+..++..++++....+|++|..++      ++
T Consensus      1032 Ee~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1032 EELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred             HHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8886 8888988887763222                  122122333467788888888888898888754      44


Q ss_pred             HHHHHhhccc------------------cccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          178 IARQSLNNNL------------------LKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       178 a~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      ++..+.+.+.                  ..-.....+-.++.+++.+|++..|.+-|-.
T Consensus      1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence            4332222111                  0001112344567777788887777655544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.01  E-value=0.0026  Score=59.50  Aligned_cols=139  Identities=15%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      .....++.-+|..|...|++++|+++.++|++.-+      ...+.+..-|.|+-..|++.+|.+..+.+......+.  
T Consensus       191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--  262 (517)
T PF12569_consen  191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--  262 (517)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence            34456788999999999999999999999998754      3457889999999999999999999999864333331  


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-C--chH-HHHHHHHHHHHc-ccCH----HHHHHHHHhccc
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS-G--TRE-YRLLSDIAASMD-EEDI----AKFTDVVKEFDS  259 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-~--~~e-~~~l~~l~~a~~-~~d~----~~~~~al~~~~~  259 (289)
                       +    .-.+.+...++.|+.+.|.+.+..+..-..... .  .-+ ..+....+.++. .|+.    ..+....+.|..
T Consensus       263 -y----iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  263 -Y----INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             -H----HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             1    112334556788999999999888865432211 1  122 466677777774 5552    455555555555


Q ss_pred             c
Q 022992          260 M  260 (289)
Q Consensus       260 ~  260 (289)
                      +
T Consensus       338 ~  338 (517)
T PF12569_consen  338 F  338 (517)
T ss_pred             H
Confidence            5

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.99  E-value=0.00012  Score=61.44  Aligned_cols=104  Identities=11%  Similarity=0.077  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      +.+.|.-+...|+|..|..-|..=+.-|+....   .++++++||.++..+|+|+.|..+|..+.......    -...+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----~KApd  216 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----PKAPD  216 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC----CCChH
Confidence            566666666669999999999999998886543   45788999999999999999999999997544322    23567


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .++++|.|...+|+.+.|...|+...+..|.
T Consensus       217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            8999999999999999999999887764443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.98  E-value=0.0016  Score=60.83  Aligned_cols=191  Identities=17%  Similarity=0.129  Sum_probs=123.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL  121 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~  121 (289)
                      +...||...|.....++.+...+..      ..+.-+..+.... ++++|...+.+|..       ..+..+++.+-+.+
T Consensus       594 ~w~agdv~~ar~il~~af~~~pnse------eiwlaavKle~en~e~eraR~llakar~-------~sgTeRv~mKs~~~  660 (913)
T KOG0495|consen  594 KWKAGDVPAARVILDQAFEANPNSE------EIWLAAVKLEFENDELERARDLLAKARS-------ISGTERVWMKSANL  660 (913)
T ss_pred             HHhcCCcHHHHHHHHHHHHhCCCcH------HHHHHHHHHhhccccHHHHHHHHHHHhc-------cCCcchhhHHHhHH
Confidence            4445666666666666655533211      1222223333333 78888888888765       23456788898998


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992          122 YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI  201 (289)
Q Consensus       122 ~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  201 (289)
                      ...+++.++|++++++++..|+...      ..+..+|.++..+++.+.|.+.|......++..       .-.+..+..
T Consensus       661 er~ld~~eeA~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-------ipLWllLak  727 (913)
T KOG0495|consen  661 ERYLDNVEEALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-------IPLWLLLAK  727 (913)
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------chHHHHHHH
Confidence            8888999999999999999988644      478899999999999999999987765333221       112333333


Q ss_pred             HHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCH----HHHHHHHHhccccCCC
Q 022992          202 CQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDI----AKFTDVVKEFDSMTPL  263 (289)
Q Consensus       202 ~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~----~~~~~al~~~~~~~~~  263 (289)
                      +--..|...+|+..|+++.--.|.-    ....+..+-.-+..|+.    ..+..|++.++..+.|
T Consensus       728 leEk~~~~~rAR~ildrarlkNPk~----~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L  789 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKNPKN----ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL  789 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcCCCc----chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence            3334567888888888875544432    22334444444455554    3566778888877765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.96  E-value=0.00084  Score=62.42  Aligned_cols=161  Identities=13%  Similarity=0.073  Sum_probs=113.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |..+...|+-++|.++-..++..      ....-.+|+-+|.+++.. ++++|+.||+.|+.+-+.+-+      .|..+
T Consensus        48 GL~L~~lg~~~ea~~~vr~glr~------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------ilrDl  115 (700)
T KOG1156|consen   48 GLTLNCLGKKEEAYELVRLGLRN------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------ILRDL  115 (700)
T ss_pred             cchhhcccchHHHHHHHHHHhcc------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------HHHHH
Confidence            34455678888888887777652      223345889999999988 999999999999999877665      88899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHLL  197 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~  197 (289)
                      +.+..++++++-....=.+-+++.+..      -..+..++..+...|+|..|.++.+......... +...+.....++
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L  189 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQ------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL  189 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            999999999998888777777765532      2357778888899999999999998886443211 111122222222


Q ss_pred             HHHHHHHccCCHHHHHHHHHH
Q 022992          198 NAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       198 ~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      -...++...|....|.+.+..
T Consensus       190 y~n~i~~E~g~~q~ale~L~~  210 (700)
T KOG1156|consen  190 YQNQILIEAGSLQKALEHLLD  210 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHh
Confidence            233455667776666655544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.95  E-value=0.00013  Score=68.48  Aligned_cols=117  Identities=11%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++.++..+++.++++.+-.      ..+|...|-+..++++...|.+.|.+++.+.+...      ..+++++..|...|
T Consensus       500 ~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~------eaWnNls~ayi~~~  567 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA------EAWNNLSTAYIRLK  567 (777)
T ss_pred             hHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch------hhhhhhhHHHHHHh
Confidence            6677777777777665532      23666777776666777777777777766654432      56677777777777


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      +-.+|...+.+++.-.       ++....+-|-.++-..-|.+++|..++.+-+.+
T Consensus       568 ~k~ra~~~l~EAlKcn-------~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  568 KKKRAFRKLKEALKCN-------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             hhHHHHHHHHHHhhcC-------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            7777777777765221       111222333333444556666676666665543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.90  E-value=0.00033  Score=66.18  Aligned_cols=144  Identities=15%  Similarity=0.080  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (289)
Q Consensus        29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~  107 (289)
                      |..-..+.-.++..+...+..+++..|..++..++.      ..+..|...|.++... ...+|.++|..|+.+.+..=.
T Consensus       646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~  719 (799)
T KOG4162|consen  646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP  719 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence            334455566678889899999999999999988863      3466777888888665 899999999999999775443


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIV--FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~--~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                            ++..+|.++.+.|+..-|..  ....|+++.+...      +++..+|.++..+|+.++|.++|+-++.....+
T Consensus       720 ------s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  720 ------SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH------EAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             ------HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence                  88899999999999888888  9999999877654      689999999999999999999999998666556


Q ss_pred             ccccc
Q 022992          186 NLLKY  190 (289)
Q Consensus       186 ~~~~~  190 (289)
                      |+.++
T Consensus       788 PV~pF  792 (799)
T KOG4162|consen  788 PVLPF  792 (799)
T ss_pred             Ccccc
Confidence            65444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.90  E-value=0.00033  Score=50.02  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=68.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           80 AHCYKKTSSNEAISCLEQAVNMFCDIGRLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        80 a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      ....+..++.+|++.+.+..+.....++..   ....++.++|.++...|++++|+..+++|+.+.++.++......++.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~   85 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS   85 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            344455589999999999999988877655   66777889999999999999999999999999999998877777777


Q ss_pred             HHHHHH
Q 022992          157 KVAQYA  162 (289)
Q Consensus       157 ~l~~~~  162 (289)
                      .+..+.
T Consensus        86 ~~~~l~   91 (94)
T PF12862_consen   86 WLANLL   91 (94)
T ss_pred             HHHHHh
Confidence            666554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.89  E-value=0.00035  Score=57.76  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----C---ccchHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE----E---VTTSANQCKQKV  158 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~-g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~----~---~~~~~~~~~~~l  158 (289)
                      .+++|++.|..|+-.+... .++...|.++.++|.+|...|+.+....++++|++.|...    .   .......++.-+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            7889999999999888754 4777899999999999999999877777888887776531    1   223445688899


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Q 022992          159 AQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      |.+..++|++++|++.|.+++.
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHc
Confidence            9999999999999999999973

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.86  E-value=5.8e-05  Score=49.70  Aligned_cols=62  Identities=18%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .+|..+...|+|++|++.|++++...       ......++.+|.|+..+|++.+|...|+++++..|.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            57889999999999999999997332       123456788999999999999999999999887765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.83  E-value=0.0058  Score=57.08  Aligned_cols=225  Identities=16%  Similarity=0.160  Sum_probs=140.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH-------HHhcCCHH--
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------FCDIGRLS--  109 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~-------~~~~g~~~--  109 (289)
                      +..|...|+.+.|...|++|..+--.  -...-+..|-+-|..-.+. +++.|+.+.++|+.+       +-+++.+.  
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~--~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~  471 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYK--TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA  471 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCcc--chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence            67899999999999999999887432  2334456666666655444 899999999999643       22233332  


Q ss_pred             ---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992          110 ---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (289)
Q Consensus       110 ---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  186 (289)
                         ..-+.|...+.+.+..|-++..-..|.+.+++--.      -+++..+.|.++....-+++|.+.|++.+....-  
T Consensus       472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~--  543 (835)
T KOG2047|consen  472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERGISLFKW--  543 (835)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence               23556667777777778888888888888776332      2357789999999999999999999998732211  


Q ss_pred             ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCC----
Q 022992          187 LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTP----  262 (289)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~----  262 (289)
                      +..+..-..|+.-..-....-..++|+..|+++++.+|.  .  .+..+.-+..-+ ..+....+.|+..|+..+.    
T Consensus       544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp--~--~aKtiyLlYA~l-EEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP--E--HAKTIYLLYAKL-EEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH--H--HHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCH
Confidence            111222233333333344444789999999999997762  1  122222222222 2233555555555554432    


Q ss_pred             ---CchhHHHHHHHHHHhccc
Q 022992          263 ---LDPWKTTLLLRVKEKLKA  280 (289)
Q Consensus       263 ---~d~~~~~~~~~~~~~~~~  280 (289)
                         +| .+...|.|.+..+-+
T Consensus       619 a~~l~-myni~I~kaae~yGv  638 (835)
T KOG2047|consen  619 AQRLD-MYNIYIKKAAEIYGV  638 (835)
T ss_pred             HHHHH-HHHHHHHHHHHHhCC
Confidence               22 334556666655543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.80  E-value=0.00086  Score=51.18  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +..+.+-|.-..+.|+|++|++.|+....-++-..   .+.++..+|+.+|...|+|++|+..+++.+..-+..+    .
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp----~   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP----N   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC----C
Confidence            44556666666667999999999999888777543   3446789999999999999999999999985533322    3


Q ss_pred             hhhHHHHHHHHHHccC
Q 022992          192 VKGHLLNAGICQLCKG  207 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~g  207 (289)
                      +..+++..|+++..+.
T Consensus        83 vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   83 VDYAYYMRGLSYYEQD   98 (142)
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            4456788898887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.00049  Score=65.62  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHH----HHHHhcCCHHHH----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc------
Q 022992           86 TSSNEAISCLEQAV----NMFCDIGRLSMA----------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE------  145 (289)
Q Consensus        86 ~~~~~A~~~~~~A~----~~~~~~g~~~~~----------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~------  145 (289)
                      .|.+.|+++|+++-    ++++-..+....          -..|.=-|.+++..|+.+.|+.+|..|-+.|...      
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q  951 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ  951 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence            38888888888862    333222111111          1344455888888999999999999998776532      


Q ss_pred             CccchHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          146 EVTTSAN---------QCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       146 ~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      |+...++         .+...||..|...|++.+|+..|.++-
T Consensus       952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            2221111         133456677777888888888888773

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.79  E-value=0.00092  Score=62.96  Aligned_cols=117  Identities=13%  Similarity=0.032  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      -.+|++|.++....     .+++...+|......++++++.++++.++++.+.      ...++..+|.+..++++++.|
T Consensus       470 ~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  470 PSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHH
Confidence            47888888887542     3345555666666679999999999999998654      236899999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      .++|...++..+       .....+.|+.-.|+..|+..+|..++.+++....+.
T Consensus       539 v~aF~rcvtL~P-------d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  539 VKAFHRCVTLEP-------DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             HHHHHHHhhcCC-------CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            999999874432       234567888888999999999999999998866443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.79  E-value=0.0008  Score=63.64  Aligned_cols=130  Identities=17%  Similarity=0.122  Sum_probs=90.8

Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus        79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      ++..+... ..++|..|..+|..+++      ..+..+...|.++...|...+|.+.|.-|+.+.+..-      .+...
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv------~s~~A  723 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDP------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV------PSMTA  723 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcch------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc------HHHHH
Confidence            33344333 44555556665555543      3455777888888888888999999988888766432      46677


Q ss_pred             HHHHHHHhcCHHHHHH--HHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          158 VAQYAAELEQYHKSIE--IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      +|.++...|+-.-|..  .+..++...       .....+|+.+|.++..+||..+|.+||..+.++.++-+
T Consensus       724 la~~lle~G~~~la~~~~~L~dalr~d-------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  724 LAELLLELGSPRLAEKRSLLSDALRLD-------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            8888888887776666  777776332       12356788888888888999999999988877766543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.75  E-value=0.00066  Score=63.57  Aligned_cols=139  Identities=15%  Similarity=0.035  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---------CHHHHHHHH
Q 022992           27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---------SSNEAISCL   95 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---------~~~~A~~~~   95 (289)
                      +.-..|.++|-++-..+..  .+++..|..+|++|+++-...      +.++..++.+|...         +...+.+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF------TYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            5557889999988655432  334789999999999885432      33333344444221         123444444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992           96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY  175 (289)
Q Consensus        96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  175 (289)
                      ++++.+-....+    +.++.-+|.++...|++++|...|++|+++-+      . ...+..+|.++...|++++|++.|
T Consensus       408 ~~a~al~~~~~~----~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        408 DNIVALPELNVL----PRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHhhhcccCcCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            444333222222    36777778888878999999999999999863      1 358899999999999999999999


Q ss_pred             HHHHHHH
Q 022992          176 EEIARQS  182 (289)
Q Consensus       176 ~~a~~~~  182 (289)
                      +++....
T Consensus       477 ~~A~~L~  483 (517)
T PRK10153        477 STAFNLR  483 (517)
T ss_pred             HHHHhcC
Confidence            9997443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.73  E-value=0.00014  Score=65.45  Aligned_cols=67  Identities=18%  Similarity=0.130  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      -+..+.++|..|...|+|++|+.+|++|+++.+...   .+..++.++|.+|..+|++++|+.++++++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            355677777777777777777777777777655431   1113467777777777777777777777763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.73  E-value=0.00066  Score=66.69  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc---
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV---  147 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~---  147 (289)
                      -..++..+...|... ++++|+..++.+++..+..-.      .+.-+|.++.+.++++.+.-.  +++.++....+   
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~------~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS------ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee------hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            345667777777444 888888888877777654333      666666666666666666555  55555554431   


Q ss_pred             ----------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992          148 ----------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE  217 (289)
Q Consensus       148 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~  217 (289)
                                ......++..+|.+|-++|++++|...|++++....       ....++.+.+-.+... |.++|...+.
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-------~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-------DNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence                      112225788999999999999999999999985432       2234566677666666 9999999998


Q ss_pred             HHhh
Q 022992          218 RYQD  221 (289)
Q Consensus       218 ~~~~  221 (289)
                      ++..
T Consensus       174 KAV~  177 (906)
T PRK14720        174 KAIY  177 (906)
T ss_pred             HHHH
Confidence            8865

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.71  E-value=0.00015  Score=48.79  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=50.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ..+|...+++++|++++++++.+.+..      ...+...|.++..+|++++|++.|++++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            467788899999999999999997763      2578889999999999999999999998554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0058  Score=54.33  Aligned_cols=153  Identities=12%  Similarity=0.079  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      .+.....|.. .+++.|+.+-+++++.-+..-      ..+..-|.++..+|+.++|+-.|+.+....      ++.. .
T Consensus       304 fV~~~~l~~~-K~~~rAL~~~eK~I~~~~r~~------~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL-~  369 (564)
T KOG1174|consen  304 FVHAQLLYDE-KKFERALNFVEKCIDSEPRNH------EALILKGRLLIALERHTQAVIAFRTAQMLA------PYRL-E  369 (564)
T ss_pred             hhhhhhhhhh-hhHHHHHHHHHHHhccCcccc------hHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhH-H
Confidence            3333444444 899999999999998755432      467778999999999999999999986221      1111 2


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV  274 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~  274 (289)
                      .|..+..||+..|.+.+|.-.-+......+.   +.  ..+.-++......|+..-+.|-+-++..-++.|.++.-+.++
T Consensus       370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~---sA--~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~  444 (564)
T KOG1174|consen  370 IYRGLFHSYLAQKRFKEANALANWTIRLFQN---SA--RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI  444 (564)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHhhc---ch--hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence            3455678899999888876665555444333   32  335445544556778788888888888888999999999999


Q ss_pred             HHhccccccccC
Q 022992          275 KEKLKAKELEED  286 (289)
Q Consensus       275 ~~~~~~~~~~~~  286 (289)
                      ++.+...|-.+|
T Consensus       445 AEL~~~Eg~~~D  456 (564)
T KOG1174|consen  445 AELCQVEGPTKD  456 (564)
T ss_pred             HHHHHhhCccch
Confidence            999887776655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.70  E-value=0.001  Score=59.99  Aligned_cols=118  Identities=19%  Similarity=0.164  Sum_probs=93.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      ...+...++++.|++.+++..+-.     +.    ...-++.++... +-.+|++.+.+++...+..      +..|..-
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~-----pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q  240 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD-----PE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ  240 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC-----Cc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            456677888999998888865443     21    233467777555 7789999999999554433      6788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +..+...++++.|+...++|+++.+..      ..++..|+.+|..+|+|++|+-.++..
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999999999987753      468999999999999999999887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.00044  Score=58.14  Aligned_cols=105  Identities=12%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      .|..+-..|...++..|...|..=+.-|+..-   -.++++.=+|.++..+|+++.|...|..++.-++..   ..+++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHH
Confidence            45555555666678888888877777776432   356678889999999999999999999998866544   457789


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      +.+||.+..++|+.++|...|++++.+.++.
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999999999998765443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00077  Score=54.13  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhccCCCCCCCHHHHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992            9 EEFEKKAEKKLNGWGLFGSKYEDAAD---LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus         9 ~~~~~~A~~~~k~~~~~~~~~~~A~~---~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      +.|+.+-++.+..     ..-+++..   -...-|+-+...|+|++|...|..|+++....-. ...+.+|.+-|.+..+
T Consensus        73 EeLmae~E~i~~d-----eek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iK  146 (271)
T KOG4234|consen   73 EELMAEIEKIFSD-----EEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIK  146 (271)
T ss_pred             HHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHH
Confidence            4666666666651     12233333   2334477777889999999999999998776533 5556677777878777


Q ss_pred             C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992           86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus        86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      + ..+.||.-+.+|+++.+...      +++..-|.+|.+...|++|++-|.+.+++.+..
T Consensus       147 l~k~e~aI~dcsKaiel~pty~------kAl~RRAeayek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  147 LRKWESAIEDCSKAIELNPTYE------KALERRAEAYEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhhHHHHHHHHHhhHhcCchhH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence            7 88999999999999977433      478888999999999999999999999887653

>PRK15331 chaperone protein SicA; Provisional

Probab=97.67  E-value=0.00048  Score=53.76  Aligned_cols=94  Identities=13%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      .|..+=..|..+++++|...|+-.+.+-+-+      .+.+..+|.++...++|++|+..|..|..+...+..      .
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------p  107 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------P  107 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC------c
Confidence            4444455566679999999998776654433      347899999999999999999999999988765443      3


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ....|.++..+|+...|..+|+.++.
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            57889999999999999999999874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.66  E-value=0.00039  Score=64.89  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~  150 (289)
                      -.+++.-++..|... ++++|+++.++|++.-+      .....+..-|.++...|++.+|.++++.|-.+...+.    
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----  262 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----  262 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----
Confidence            356778889999666 99999999999998854      3456999999999999999999999999998866542    


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                        -+-.+.+-.+.+.|++++|.+..........+  ..+...+...+....|.+|...|++..|.+.|......+..
T Consensus       263 --yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  263 --YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence              23466778889999999999987766321111  11112222333445689999999999998777766554433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.024  Score=47.37  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=108.9

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      .|+....+.... +.+-|..|+.+-..-|+....      +..--|..++..|++++|+++|+.-++-.+.+     ...
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~  122 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR------VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVI  122 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh------HHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHH
Confidence            445544444443 778888898888777754443      66677888999999999999999887643222     221


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR  233 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~  233 (289)
                      --.+++ +.-.+|+--+||+-...-+...+       .-.++|..+..+|+..|++.+|.=|+++.+-+.|..+     .
T Consensus       123 ~KRKlA-ilka~GK~l~aIk~ln~YL~~F~-------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-----l  189 (289)
T KOG3060|consen  123 RKRKLA-ILKAQGKNLEAIKELNEYLDKFM-------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-----L  189 (289)
T ss_pred             HHHHHH-HHHHcCCcHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----H
Confidence            224444 45557777799998877765443       3346788889999999999999999999877666533     2


Q ss_pred             HHHHHHHHH-cccCHHHHHHHHHhccccCCCch
Q 022992          234 LLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDP  265 (289)
Q Consensus       234 ~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~  265 (289)
                      ....+++.. -.|-.+.+..+.+-|.+.-.+.|
T Consensus       190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  190 YFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            233444332 23334445555544444444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.64  E-value=0.0041  Score=59.00  Aligned_cols=105  Identities=14%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQA------VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM----  141 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A------~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~----  141 (289)
                      +..|..+|.+|.+. ++++|++||++-      +++.+ .--|......-..-|.-+...|+++.|+.+|-.|-.+    
T Consensus       661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai  739 (1636)
T KOG3616|consen  661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI  739 (1636)
T ss_pred             hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence            34566777777777 888888887653      33321 2233444445555577777778888888887655322    


Q ss_pred             ---------------HhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          142 ---------------FQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       142 ---------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                                     .....++..+...+-.+++-|...|+|+-|.++|.++
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                           1112222222233344455555566666666665554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.63  E-value=0.00013  Score=41.96  Aligned_cols=32  Identities=16%  Similarity=0.458  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      +|.+||.+|...|++++|+++|++++.+.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            46778888888888888888888877765544

>KOG3024 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.035  Score=47.00  Aligned_cols=233  Identities=14%  Similarity=0.120  Sum_probs=153.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Q 022992           24 LFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFC  103 (289)
Q Consensus        24 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~  103 (289)
                      +-+|+|-+|.+.|.-....|...+.++.|++.....+.++-+.+....++.....+..++.+.++........       
T Consensus        17 ~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~a-------   89 (312)
T KOG3024|consen   17 IELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVA-------   89 (312)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHH-------
Confidence            3447999999999999999999999999999988888888877777677777766666665432222222222       


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--
Q 022992          104 DIGRLSMAARYYKEIAELYESEHNIEQ-TIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA--  179 (289)
Q Consensus       104 ~~g~~~~~a~~l~~la~~~~~~g~~~~-A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~--  179 (289)
                                   +++.+....+.-+. -..+.++|++--.+. +.+.+-+..+..+|..+..-+++.+|..+|-..-  
T Consensus        90 -------------nl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~  156 (312)
T KOG3024|consen   90 -------------NLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDG  156 (312)
T ss_pred             -------------HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCCh
Confidence                         22223222222222 223444555443332 3334455678888888888888888888764331  


Q ss_pred             --------HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh------------cCC------CCCCchHHH
Q 022992          180 --------RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD------------MDP------TFSGTREYR  233 (289)
Q Consensus       180 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~------------~~~------~~~~~~e~~  233 (289)
                              ..... ...+...-..+.++.+=++...+...|...+..|++            ...      -+...+.-.
T Consensus       157 s~~a~~ll~y~~~-r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllN  235 (312)
T KOG3024|consen  157 SKFAYMLLEYSMS-RGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLN  235 (312)
T ss_pred             HHHHHHHHHHHhh-cccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHH
Confidence                    00000 111111112344556667777888889999998887            322      112455667


Q ss_pred             HHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992          234 LLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  277 (289)
Q Consensus       234 ~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~  277 (289)
                      ++.-|+..+..+|...|......|+..-.-|+.....+.||.+.
T Consensus       236 Fl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~Igel  279 (312)
T KOG3024|consen  236 FLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGEL  279 (312)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHH
Confidence            88889999999999999999999999877888888888888764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.018  Score=49.29  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHH------Hcc-CC-HHHHHHHHHHHHHHHHhcCCH-
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKH-EAAQAYVDAAHC------YKK-TS-SNEAISCLEQAVNMFCDIGRL-  108 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~aa~~~~~~a~~------~~~-~~-~~~A~~~~~~A~~~~~~~g~~-  108 (289)
                      .|-||....+|..|.+||++....+.+...+. =-|.++.+++..      ... .| ..---++.+--..+.-..++. 
T Consensus        50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~  129 (459)
T KOG4340|consen   50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLP  129 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCc
Confidence            46678888888888888888877765443221 123333333211      111 11 110111111111111112221 


Q ss_pred             -----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992          109 -----------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus       109 -----------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                                 ...|.++.+.|-+..+.|+++.|+.-|+.|++.-   |-.+   -.-.+++-++...|+|..|+++-.+
T Consensus       130 g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqp---llAYniALaHy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  130 GSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQP---LLAYNLALAHYSSRQYASALKHISE  203 (459)
T ss_pred             chHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc---CCCc---hhHHHHHHHHHhhhhHHHHHHHHHH
Confidence                       2356677888888888899999999999998862   3222   2447889999999999999999999


Q ss_pred             HHHHHhh
Q 022992          178 IARQSLN  184 (289)
Q Consensus       178 a~~~~~~  184 (289)
                      ++.+.+.
T Consensus       204 IieRG~r  210 (459)
T KOG4340|consen  204 IIERGIR  210 (459)
T ss_pred             HHHhhhh
Confidence            9865544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=0.0027  Score=59.55  Aligned_cols=123  Identities=13%  Similarity=-0.002  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE--------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~--------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l  158 (289)
                      +...|+++|++|+++.+...      .++..++.++...        .+...+....++++.+-..   +. .+.++.-+
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~---~~-~~~~~~al  426 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL---NV-LPRIYEIL  426 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC---cC-ChHHHHHH
Confidence            67899999999999977543      2444444444322        1233444445554443111   11 13567778


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      |.++...|++++|...+++++...      . . ...+...|.++...|+.++|.+.++++..+.|..+
T Consensus       427 a~~~~~~g~~~~A~~~l~rAl~L~------p-s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        427 AVQALVKGKTDEAYQAINKAIDLE------M-S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC------C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            888888999999999999998432      1 1 23566778899999999999999999999998876

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.52  E-value=0.00018  Score=47.75  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..|++++|+.+|++++...+...      .+...+|.++...|++++|...++++..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNP------EARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSH------HHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45999999999999999887643      5778999999999999999999999863

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.031  Score=47.03  Aligned_cols=170  Identities=12%  Similarity=0.108  Sum_probs=115.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++.-.++.+.+.++.     ++.........+|.+-.+.||.+.|-.+|++.-......+.......+..+.+.++.-.+
T Consensus       192 Ey~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n  266 (366)
T KOG2796|consen  192 EYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN  266 (366)
T ss_pred             hhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence            777778888877763     344556788899999999999999999999765544444445566778899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc--c
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD--E  244 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~--~  244 (289)
                      +|-+|...|.++.....+       ...+..+-++|.+-.|+...|.+..+...+++|+..-. | .++.+|...++  .
T Consensus       267 n~a~a~r~~~~i~~~D~~-------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~-e-s~~~nL~tmyEL~Y  337 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPR-------NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH-E-SVLFNLTTMYELEY  337 (366)
T ss_pred             chHHHHHHHhhccccCCC-------chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh-h-hHHHHHHHHHHHHh
Confidence            999999999998743222       12233456788888899999999999998888875422 2 23444444332  2


Q ss_pred             cCHHHHHHHHHhccccCCCchhHHHH
Q 022992          245 EDIAKFTDVVKEFDSMTPLDPWKTTL  270 (289)
Q Consensus       245 ~d~~~~~~al~~~~~~~~~d~~~~~~  270 (289)
                      .+...-+.++..+-.-...|+.++.+
T Consensus       338 s~~~~~k~~l~~~ia~~~~d~f~~~c  363 (366)
T KOG2796|consen  338 SRSMQKKQALLEAVAGKEGDSFNTQC  363 (366)
T ss_pred             hhhhhHHHHHHHHHhccCCCcccchh
Confidence            22233344444444444455555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.52  E-value=0.004  Score=56.29  Aligned_cols=128  Identities=14%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      -|-.+-..|....+++|...++.-+...++      -...+.-.+.++...++.++|++.+++++..++...      -.
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l  376 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LL  376 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HH
Confidence            333333334444677777777764444332      234677788999999999999999999999877542      35


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      ..++|..+.+.|++.+|+.++.+.......++       ..|..++..|-.+|+..++..+..+...
T Consensus       377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDP-------NGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc-------hHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            68899999999999999999998875443332       2355566777778888777777666544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.51  E-value=0.0054  Score=55.79  Aligned_cols=149  Identities=15%  Similarity=0.168  Sum_probs=97.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------c-
Q 022992           79 AAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------V-  147 (289)
Q Consensus        79 ~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~----------~-  147 (289)
                      +-.++++.+++.-++..++|+++.+.+      +.++.-+|.=..  ....+|.++|++|++..+..-          . 
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdC------AdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDC------ADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhh------hHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            334466668888999999999998743      346665554322  457888888888887655310          0 


Q ss_pred             --------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          148 --------TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       148 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                              ......+...+|.+..++|+.++|++.+++.+.....  .   ..-+...++..+++..+.+.+++..+.+|
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~---~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--L---DNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--c---chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                    0111235578999999999999999999998743211  1   12234456778889999999999999998


Q ss_pred             hhcCCCCCCchHHHHHHHHHHHH
Q 022992          220 QDMDPTFSGTREYRLLSDIAASM  242 (289)
Q Consensus       220 ~~~~~~~~~~~e~~~l~~l~~a~  242 (289)
                      .++  ..+.+.....-..|+.+-
T Consensus       322 dDi--~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  322 DDI--SLPKSATICYTAALLKAR  342 (539)
T ss_pred             ccc--cCCchHHHHHHHHHHHHH
Confidence            643  233444433333455443

The molecular function of this protein is uncertain.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.51  E-value=0.004  Score=59.01  Aligned_cols=66  Identities=21%  Similarity=0.366  Sum_probs=38.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992           98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus        98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                      |+.+.....+...+...+-.++.-|...|+++.|.++|.++-              .++....+|.+.|+|+.|.++-++
T Consensus       751 ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------------~~~dai~my~k~~kw~da~kla~e  816 (1636)
T KOG3616|consen  751 AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------------LFKDAIDMYGKAGKWEDAFKLAEE  816 (1636)
T ss_pred             hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------------hhHHHHHHHhccccHHHHHHHHHH
Confidence            344444344444455667777888888888888888775541              223334455556666666555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.51  E-value=0.025  Score=45.32  Aligned_cols=130  Identities=13%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992           90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus        90 ~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      +-++-++.-+.-+..+.--.....++..+|..|...|+.+.|+++|.++.+....   +....++...+..+....+++.
T Consensus        14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~   90 (177)
T PF10602_consen   14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWS   90 (177)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHH
Confidence            3344555556666667667788899999999999999999999999998775433   3345577788888999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhH-HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          170 KSIEIYEEIARQSLNNNLLKYGVKGH-LLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       170 ~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ....+..++-.......  .+....- -.-.|+.++..+++..|...|   ++..+.|.
T Consensus        91 ~v~~~i~ka~~~~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~f---l~~~~t~~  144 (177)
T PF10602_consen   91 HVEKYIEKAESLIEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELF---LDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHH---HccCcCCC
Confidence            99999999853322211  1111111 122378888899999888877   55555554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.51  E-value=0.015  Score=49.16  Aligned_cols=247  Identities=12%  Similarity=0.135  Sum_probs=131.9

Q ss_pred             CC-CCHHHHHHHHHHHHHHHH--------------------HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           25 FG-SKYEDAADLFDKAANSFK--------------------LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY   83 (289)
Q Consensus        25 ~~-~~~~~A~~~~~~A~~~~~--------------------~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~   83 (289)
                      |+ ++|++-.+.|.+....-+                    ...+.+--.++|+.-+++.+...+..-.-..-..+|.+|
T Consensus        76 f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~  155 (440)
T KOG1464|consen   76 FRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLY  155 (440)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhh
Confidence            45 777777777776643322                    122334444556666666555444433344445667777


Q ss_pred             ccC-CHHHHHHHHHHHHHHHHh-cC--CHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           84 KKT-SSNEAISCLEQAVNMFCD-IG--RLS---MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        84 ~~~-~~~~A~~~~~~A~~~~~~-~g--~~~---~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      ... ++.+-...+.+.-.-+.. .|  +..   +.-..+.---.+|..+.+..+--..|++|+.+-.....|.....+..
T Consensus       156 fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE  235 (440)
T KOG1464|consen  156 FDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE  235 (440)
T ss_pred             eeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH
Confidence            655 444433333333222211 11  111   11222222234555556666666789999988665554443332222


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh-hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK-GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL  235 (289)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l  235 (289)
                      -=|-++.+-|+|++|..-|=++....-..+ +..++. --|+.++......|     +.-|.. .+ ..-|...+|....
T Consensus       236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~-----iNPFDs-QE-AKPyKNdPEIlAM  307 (440)
T KOG1464|consen  236 CGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG-----INPFDS-QE-AKPYKNDPEILAM  307 (440)
T ss_pred             cCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC-----CCCCcc-cc-cCCCCCCHHHHHH
Confidence            334577888999999887766653221111 111111 11222222222222     011211 11 1124467888889


Q ss_pred             HHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          236 SDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       236 ~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      .+|..++.+.|...|++.++..+...--||..+.-+..+-++++
T Consensus       308 Tnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niR  351 (440)
T KOG1464|consen  308 TNLVAAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIR  351 (440)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999977766567887765555555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00026  Score=40.01  Aligned_cols=33  Identities=15%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      |+++.++|.++..+|++++|+.+|++|+++.+.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467888888888888888888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0034  Score=50.54  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .+.-+..=|.-+...|+|++|..-|..|+++.+.... ...+-++.+-|.++.+++.++.|+.-+.+++...  .   .+
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--p---ty  167 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN--P---TY  167 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--c---hh
Confidence            3445556667777779999999999999998776543 3445678888889999999999999999887432  1   11


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE  231 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e  231 (289)
                        ..++.+.+.+|-.+..++.|..-|.+.++.+|+....++
T Consensus       168 --~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~  206 (271)
T KOG4234|consen  168 --EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE  206 (271)
T ss_pred             --HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence              123344456676777788888888888888887543333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.44  E-value=0.0069  Score=56.24  Aligned_cols=204  Identities=12%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHH-cc---C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAA--QAYVDAAHCY-KK---T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa--~~~~~~a~~~-~~---~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      .||-+.++....++.+ ......+....  -.|+.....+ -.   . +.+.|.+.+......||+.      +-.+..-
T Consensus       201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lfl~~~  273 (468)
T PF10300_consen  201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALFLFFE  273 (468)
T ss_pred             CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHHHHHH
Confidence            6888999988888765 33333332211  1222222211 11   2 6778888888888888843      3467888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.++...|+.++|+++|++|+..-..  .+....-++..++.++.-+.+|++|..+|.+....      +.++..-+.+.
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~  345 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHH
Confidence            99999999999999999999853322  23334568999999999999999999999998632      24444445566


Q ss_pred             HHHHHHccCCH-------HHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHHc-ccC--------HHHHHHHHHhcccc
Q 022992          199 AGICQLCKGDV-------VAITNALERYQDMDPTF--SGTREYRLLSDIAASMD-EED--------IAKFTDVVKEFDSM  260 (289)
Q Consensus       199 ~~~~~l~~gd~-------~~A~~~~~~~~~~~~~~--~~~~e~~~l~~l~~a~~-~~d--------~~~~~~al~~~~~~  260 (289)
                      .|.|+...|+.       .+|...|.+.-......  ...+--.++..-+.-+. .+.        .--..+.+--|..+
T Consensus       346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~  425 (468)
T PF10300_consen  346 AAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMYFWNGF  425 (468)
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHHHHhcc
Confidence            78898888888       78888888765443321  12222233434444443 211        23455666677777


Q ss_pred             CCCc
Q 022992          261 TPLD  264 (289)
Q Consensus       261 ~~~d  264 (289)
                      ..+.
T Consensus       426 ~~~~  429 (468)
T PF10300_consen  426 PRMP  429 (468)
T ss_pred             ccCC
Confidence            7765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.43  E-value=0.00039  Score=62.67  Aligned_cols=65  Identities=12%  Similarity=0.028  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~  141 (289)
                      ..+.++|.+|... ++++|+.+|++|+++.+..   ..+..++.++|.+|..+|++++|+.+|++|+++
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444444443 5555555555555553321   111233455555555555555555555555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.42  E-value=0.016  Score=42.56  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcC-----CHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           71 EAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIG-----RLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g-----~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~  141 (289)
                      +.+.+|.-++..-++.   .+++|...+++|.++.+..-     |.. --+-|+..++..+..+|+|++++..-.+|+.+
T Consensus         5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3455666666665554   78899999999998876542     222 24778999999999999999999999999999


Q ss_pred             HhccCccc-----hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          142 FQNEEVTT-----SANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       142 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      |...|..+     ....+..+-+..+..+|+.++|++.|+.+..
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            87655331     1223445566677889999999999999863

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.39  E-value=0.0026  Score=48.60  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE  231 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e  231 (289)
                      ...+.+-|.-....|+|++|++.|+.+..+.+.   ..+ +..+.+.++-+|...|+++.|...+++++.++|.+....-
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY   85 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY   85 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---Ccc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence            456777888888999999999999999755432   233 2345678889999999999999999999999999986655


Q ss_pred             HHHHHHHHH
Q 022992          232 YRLLSDIAA  240 (289)
Q Consensus       232 ~~~l~~l~~  240 (289)
                      +....+|..
T Consensus        86 a~Y~~gL~~   94 (142)
T PF13512_consen   86 AYYMRGLSY   94 (142)
T ss_pred             HHHHHHHHH
Confidence            555555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.37  E-value=0.0057  Score=55.20  Aligned_cols=110  Identities=17%  Similarity=0.138  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      +++.|+..+++..+..+         .....++.++...++..+|+....+++...+.+      ...+...+.++...+
T Consensus       184 ~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  184 RYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK  248 (395)
T ss_pred             cHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC
Confidence            77888888877554432         245567888888889999999999999655443      567888999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          167 QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      +++.|+++.+++....+.       ....|..++.||...||++.|.-+++-
T Consensus       249 ~~~lAL~iAk~av~lsP~-------~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPS-------EFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             CHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            999999999999754322       234578899999999999999877764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.019  Score=53.20  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cC------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN---EE------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~---~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ..+.|.|-++...|+|++|++.+++|+.+.++   .+      .....+.+..+++.++..+|+..+|..+|...+..
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            45667777777789999999999999766542   11      12345567889999999999999999999988743

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.35  E-value=0.00053  Score=38.54  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      |.++..+|.++...|++++|+.+|++|+++.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            456778888888888888888888888877653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.34  E-value=0.027  Score=46.61  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHH
Q 022992           48 SWDKAGATYVKLANCHLKLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD-------IGRLSMAARYYKEI  118 (289)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~-------~g~~~~~a~~l~~l  118 (289)
                      .+++|+..|.-|+-++.-.+ ++...|..+.++|=+|+.. +.+....++++|++.|.+       .........++.-+
T Consensus        92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi  171 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI  171 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence            34555555555555544322 4445555666666666655 545555555555555443       23345667899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      |.+....|++++|+.+|.+.+..-.
T Consensus       172 geL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  172 GELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            9999999999999999999987643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.30  E-value=0.056  Score=43.08  Aligned_cols=173  Identities=18%  Similarity=0.162  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..+...+..+...+++..+...+......    .........+...+..+... .+..++..+.++.........     
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  130 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----  130 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----
Confidence            34445566667777788888877777765    11223344566666666555 677888888888776554411     


Q ss_pred             HHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          113 RYYKEIAE-LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       113 ~~l~~la~-~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                       .....+. ++...|+++.|+..|.+++...+.   ...........+..+...+++++|+..+.++.......      
T Consensus       131 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------  200 (291)
T COG0457         131 -AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------  200 (291)
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc------
Confidence             2222222 777779999999999999653221   11233455566666788899999999999887432110      


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ....+..++.++...++...|...+.......+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            1234556677777788888899998888776655

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.028  Score=49.24  Aligned_cols=181  Identities=19%  Similarity=0.178  Sum_probs=92.2

Q ss_pred             HHHHHHhhc-cCCCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           12 EKKAEKKLN-GWGLFGSKYEDAADLFDKA---------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        12 ~~~A~~~~k-~~~~~~~~~~~A~~~~~~A---------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      .++|.|+=+ -.++-+-||..|+.+.+-.               +.|+...|+|++|++.|.-+..-    .+  .-+..
T Consensus        20 ~kkarK~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~--~~~el   93 (557)
T KOG3785|consen   20 IKKARKMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DD--APAEL   93 (557)
T ss_pred             chhhhcCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CC--CCccc
Confidence            455555544 1122236777777776654               34455566666665555544331    11  11223


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      ..+++-|+.-. .+.+|..       +..+..+.....+.+..++.-+..    ++-+-.|.+.+.--         .+-
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~-------~~~ka~k~pL~~RLlfhlahklnd----Ek~~~~fh~~LqD~---------~Ed  153 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKS-------IAEKAPKTPLCIRLLFHLAHKLND----EKRILTFHSSLQDT---------LED  153 (557)
T ss_pred             chhHHHHHHHHHHHHHHHH-------HHhhCCCChHHHHHHHHHHHHhCc----HHHHHHHHHHHhhh---------HHH
Confidence            34444444333 3333333       333334444444555555444332    22233333332211         122


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ...++.++.-.-.|++||..|.+++...   +  .+...  -..+++||..+.-++-+.+.+..|+..+|.
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn---~--ey~al--NVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDN---P--EYIAL--NVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcC---h--hhhhh--HHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence            3566777777778899999998886321   1  12221  234578888887777778888888775443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.28  E-value=0.19  Score=48.41  Aligned_cols=148  Identities=16%  Similarity=0.108  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992           68 SKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .+...+.+..++|.++.. . +++.|..++.++..+..+.+-.+.--.+-.-++.++.+.+... |.....++++.++..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            567889999999999854 4 9999999999999999885555445556666799999855555 999999999999885


Q ss_pred             CccchHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHH--HHHHHHHccCCHHHHHHHHHHHh
Q 022992          146 EVTTSANQCKQKV-AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLL--NAGICQLCKGDVVAITNALERYQ  220 (289)
Q Consensus       146 ~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~gd~~~A~~~~~~~~  220 (289)
                      +...+.- ++.-+ ..+....+++..|++.++.+.......+.   .....++  .-+++++..+....+.+.+++..
T Consensus       133 ~~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d---~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~  206 (608)
T PF10345_consen  133 GHSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD---PAVFVLASLSEALLHLRRGSPDDVLELLQRAI  206 (608)
T ss_pred             CchhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            5544332 22222 23333348999999999999754321111   1111222  22566677776666666666553

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.28  E-value=0.0078  Score=47.96  Aligned_cols=133  Identities=8%  Similarity=0.063  Sum_probs=94.1

Q ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      .++...++. |++....-..+.+++.+-.-       -...+|..+.+.|++.+|..+|++|+.-     -...-...+.
T Consensus        61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-------nr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lL  128 (251)
T COG4700          61 TLLMALQQKLDPERHLREATEELAIAPTVQ-------NRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLL  128 (251)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHHhhchhHH-------HHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHH
Confidence            334444444 77777666666666655433       3567788888889999999999999853     2222235788


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .++......+++-.|...+++.....   +.  .......+-.+.++...|.+.+|+..|+.+.+..|.+.
T Consensus       129 glA~Aqfa~~~~A~a~~tLe~l~e~~---pa--~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         129 GLAQAQFAIQEFAAAQQTLEDLMEYN---PA--FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhhcC---Cc--cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            89999999999999999999987432   11  12223334456777889999999999999988776653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.0031  Score=53.76  Aligned_cols=209  Identities=10%  Similarity=0.083  Sum_probs=117.9

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHH--
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAEL--  121 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~-~a~~l~~la~~--  121 (289)
                      -.+|..++++..--.+...+    .  -..++.+|.||... ++..|.+||++...++++..+... .|..+.+.+..  
T Consensus        23 d~ry~DaI~~l~s~~Er~p~----~--rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPR----S--RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            34566666665544433221    1  22566788888777 899999999998888776544321 23333322111  


Q ss_pred             ----HHhcCCHH---HHHHHHHHHHHHHhcc--Cc-------c-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          122 ----YESEHNIE---QTIVFFEKAADMFQNE--EV-------T-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       122 ----~~~~g~~~---~A~~~y~~A~~~~~~~--~~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                          ....++.+   +-.-.++.|+...+++  |.       + ...+.+.++.|.+..+.|+|+.|++-|+.+....-.
T Consensus        97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen   97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence                11113311   1111233333332211  10       1 234567888999999999999999999999743211


Q ss_pred             ccccccchhhHHHHHHHHHHccCCHHHHHHHHH----HHhhcCCCCC-C------------chHHHHHHHHHHH------
Q 022992          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALE----RYQDMDPTFS-G------------TREYRLLSDIAAS------  241 (289)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~----~~~~~~~~~~-~------------~~e~~~l~~l~~a------  241 (289)
                      ++       ..-+++++||...|++..|.+...    +....+|.++ +            ..-..-...|..+      
T Consensus       177 qp-------llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA  249 (459)
T KOG4340|consen  177 QP-------LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA  249 (459)
T ss_pred             Cc-------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence            11       123678899999999999876554    4455566654 0            1111112223333      


Q ss_pred             --HcccCHHHHHHHHHhcccc--CCCchhH
Q 022992          242 --MDEEDIAKFTDVVKEFDSM--TPLDPWK  267 (289)
Q Consensus       242 --~~~~d~~~~~~al~~~~~~--~~~d~~~  267 (289)
                        +..+|.+..++++-+.+-.  +.+||.-
T Consensus       250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvT  279 (459)
T KOG4340|consen  250 IEYQLRNYEAAQEALTDMPPRAEEELDPVT  279 (459)
T ss_pred             hhhhcccHHHHHHHhhcCCCcccccCCchh
Confidence              2467778888888776544  3356643

>PRK11906 transcriptional regulator; Provisional

Probab=97.23  E-value=0.031  Score=50.83  Aligned_cols=135  Identities=10%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           87 SSNEAISCLEQAV---NMFCDIGRLSMAARYYKEIAELYES---------EHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        87 ~~~~A~~~~~~A~---~~~~~~g~~~~~a~~l~~la~~~~~---------~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      +...|..++.+|+   ++-+.      -+.++--++.++..         ..+..+|.++-++|+++.+.+.      .+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da------~a  340 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTL------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG------KI  340 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcc------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH------HH
Confidence            6778888899988   44332      22344444444433         2456788889999999876553      57


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL  234 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~  234 (289)
                      +..+|.++...++++.|+..|+++....  +     +....++..|.++...|+.+.|.+.+++++.+.|.-.   .+.+
T Consensus       341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~--P-----n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~---~~~~  410 (458)
T PRK11906        341 LAIMGLITGLSGQAKVSHILFEQAKIHS--T-----DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR---KAVV  410 (458)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHhhcC--C-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh---HHHH
Confidence            8899999999999999999999997432  1     2334455667777788999999999999988876532   3345


Q ss_pred             HHHHHHHHc
Q 022992          235 LSDIAASMD  243 (289)
Q Consensus       235 l~~l~~a~~  243 (289)
                      +...++.|.
T Consensus       411 ~~~~~~~~~  419 (458)
T PRK11906        411 IKECVDMYV  419 (458)
T ss_pred             HHHHHHHHc
Confidence            555555664

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.23  E-value=0.0079  Score=50.97  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      .....++++.+|.+.|...+.......+...+|.-|...|++++|+.+|+.+...|+..|.......++..+..+...+|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             CHHHHHHHHHHH
Q 022992          167 QYHKSIEIYEEI  178 (289)
Q Consensus       167 ~~~~A~~~~~~a  178 (289)
                      +.+..+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            999888765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.22  E-value=0.049  Score=51.37  Aligned_cols=66  Identities=14%  Similarity=0.085  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .++.+-+.+...++..++|++++++++....       .....|+..|.++..+++.+.|+.+|...+..+|.
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~  717 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN  717 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence            3555555566666666666666666653221       11234455566666666666666666555554444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.22  E-value=0.0011  Score=44.60  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=48.2

Q ss_pred             HHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992           81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        81 ~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .+|.+. ++++|+.++++++.+.+..      ...+...|.++...|++++|+..|+++++..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            455555 8999999999999997764      348888999999999999999999999987664

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.21  E-value=0.018  Score=52.23  Aligned_cols=116  Identities=16%  Similarity=0.059  Sum_probs=89.2

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE  123 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~  123 (289)
                      ..|.+++|...+...+....  ++    ...+.-++.++... +..+|.+.+++++..++...      -...++|..+.
T Consensus       318 ~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l~~~~a~all  385 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LLQLNLAQALL  385 (484)
T ss_pred             HhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HHHHHHHHHHH
Confidence            45677777777777444332  22    33556678888776 99999999999999988653      47889999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +.|++.+|+..+.+.+.-.+.+      +..|..|+..|..+|+-.+|...+-+.
T Consensus       386 ~~g~~~eai~~L~~~~~~~p~d------p~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         386 KGGKPQEAIRILNRYLFNDPED------PNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             hcCChHHHHHHHHHHhhcCCCC------chHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            9999999999999887655443      257889999999999988887766554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.21  E-value=0.1  Score=43.81  Aligned_cols=161  Identities=16%  Similarity=0.150  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESK   69 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   69 (289)
                      -+..|.+++.+.|+.     |+|++|++.|+..                 +-++...+++++|+....+-+..+....+ 
T Consensus        33 p~~~LY~~g~~~L~~-----gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-  106 (254)
T COG4105          33 PASELYNEGLTELQK-----GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-  106 (254)
T ss_pred             CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-
Confidence            578899999998884     6999999999987                 34566789999999999999988875543 


Q ss_pred             HHHHHHHHHHHHHHccC------CH---HHHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHHHHhcCCHH
Q 022992           70 HEAAQAYVDAAHCYKKT------SS---NEAISCLEQAVNMFCDIGRL-----------SMAARYYKEIAELYESEHNIE  129 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~------~~---~~A~~~~~~A~~~~~~~g~~-----------~~~a~~l~~la~~~~~~g~~~  129 (289)
                        +.-++.-.|.++...      |.   .+|+.-++.-+.-|+...-.           ...|..-..+|..|.+.|.+-
T Consensus       107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence              223344444444332      32   45666666666666654321           244666678899999999999


Q ss_pred             HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      .|+..+++.++-++...   .....+..+...|..+|-.++|-+.-.-+
T Consensus       185 AA~nR~~~v~e~y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl  230 (254)
T COG4105         185 AAINRFEEVLENYPDTS---AVREALARLEEAYYALGLTDEAKKTAKVL  230 (254)
T ss_pred             HHHHHHHHHHhcccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            99999999999877654   34467888899999999999987765433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.21  E-value=0.042  Score=44.01  Aligned_cols=126  Identities=12%  Similarity=0.036  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE  129 (289)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~  129 (289)
                      +-++-++.-+.-++...-......++..+|..|.+. +.++|+++|.++.+..   -.+......+.++-.+....+++.
T Consensus        14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~   90 (177)
T PF10602_consen   14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS   90 (177)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence            334445555555555445566678899999999777 9999999999977653   344455556666666666668999


Q ss_pred             HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .+..+..+|-.+....++....+....--|..+...++|.+|.+.|-++.
T Consensus        91 ~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen   91 HVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            99999999999988877655555555556666777899999999998886

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.15  E-value=0.01  Score=42.22  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKH---EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~---~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~  120 (289)
                      ..|++.+|.+.+.+..+.....+...   .-..++.++|.++... ++++|+..+++|+.+.+..+|....+.++.-+..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~   89 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN   89 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            56888888888888888877665543   4555677788887666 9999999999999999999999999999988887


Q ss_pred             HHH
Q 022992          121 LYE  123 (289)
Q Consensus       121 ~~~  123 (289)
                      +..
T Consensus        90 l~~   92 (94)
T PF12862_consen   90 LLK   92 (94)
T ss_pred             Hhh
Confidence            765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.15  E-value=0.0087  Score=51.96  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus        79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      +|.++... ++++|++.+.+.       ++.    .+..-.-.++...++++.|...++..-++.+.        .++.+
T Consensus       108 ~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD--------~~l~q  168 (290)
T PF04733_consen  108 AATILFHEGDYEEALKLLHKG-------GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDED--------SILTQ  168 (290)
T ss_dssp             HHHHHCCCCHHHHHHCCCTTT-------TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC--------HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcc-------Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------HHHHH
Confidence            34445443 666666665432       222    23344556777789999999888776554221        35566


Q ss_pred             HHHHHH--Hhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992          158 VAQYAA--ELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYR  233 (289)
Q Consensus       158 l~~~~~--~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~  233 (289)
                      ++..++  ..|  .+.+|.-+|++.....   +    .....+...+.|++.+|++++|.+.+..++..++.     ...
T Consensus       169 La~awv~l~~g~e~~~~A~y~f~El~~~~---~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-----~~d  236 (290)
T PF04733_consen  169 LAEAWVNLATGGEKYQDAFYIFEELSDKF---G----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-----DPD  236 (290)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHCCS---------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-----HHH
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcc---C----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-----CHH
Confidence            665444  344  6999999999975211   0    12233455678999999999999999998765543     234


Q ss_pred             HHHHHHHHH-cccCH-HHHHHHHHhccccCCCchhHHHHH
Q 022992          234 LLSDIAASM-DEEDI-AKFTDVVKEFDSMTPLDPWKTTLL  271 (289)
Q Consensus       234 ~l~~l~~a~-~~~d~-~~~~~al~~~~~~~~~d~~~~~~~  271 (289)
                      ++.+++... ..|+. +..++.+.......+.-||....-
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            566666544 35665 667777777776766656655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.14  E-value=0.0014  Score=43.36  Aligned_cols=56  Identities=25%  Similarity=0.365  Sum_probs=44.1

Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ...|+|++|++.|++++...+++       ....+.++.|++..|++++|...+++.....|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDN-------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            56899999999999998654332       345667899999999999999999988776554

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.13  E-value=0.027  Score=47.19  Aligned_cols=126  Identities=13%  Similarity=0.237  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY  232 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~  232 (289)
                      ..+.+-|......|+|++|++.|+.+..+.   +.+.+. ....+..+-++...++++.|+..++++..+.|..+...-.
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            344555555666777888888887775332   222333 2344555666677777888888888887777777666656


Q ss_pred             HHHHHHHHHH----cccCH-------HHHHHHHHhccccCCCchhHHHHHHHHHHhcccccc
Q 022992          233 RLLSDIAASM----DEEDI-------AKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKEL  283 (289)
Q Consensus       233 ~~l~~l~~a~----~~~d~-------~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  283 (289)
                      ..+..|..-.    ...|+       ..|.+.+.+|+... ..|--..++..+++.|-..++
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-Ya~dA~~~i~~~~d~LA~~Em  171 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-YAPDAKARIVKLNDALAGHEM  171 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHHHHHHH
Confidence            6666655433    14444       34444444444443 223334666666666655443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.062  Score=43.21  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      .=+.-....++..+.+.+++++|+..++.++..-..   ....+-+-.+|+.+...+|.+++|+..+......       
T Consensus        86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------  155 (207)
T COG2976          86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD---ENLKALAALRLARVQLQQKKADAALKTLDTIKEE-------  155 (207)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-------
Confidence            334455667788888889999999999999865322   1223345688999999999999999998765311       


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      .+ ........|-+++..||..+|+..|+++++..
T Consensus       156 ~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         156 SW-AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             cH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            01 11112235788889999999999999998865

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.12  E-value=0.28  Score=47.26  Aligned_cols=213  Identities=15%  Similarity=0.062  Sum_probs=140.7

Q ss_pred             HhhHHHHHHHHHHhhccCC-CCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWG-LFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHC   82 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~-~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~   82 (289)
                      +++=++|++-|=++|.-.. -|+ +...+|.-.+.-|...+....+++.|..+..|+..+.++.+-.+.--.+..-++.+
T Consensus        30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i  109 (608)
T PF10345_consen   30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI  109 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4455566666667776221 455 55688888888888889999999999999999999998855444444555566888


Q ss_pred             HccCCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           83 YKKTSSNEAISCLEQAVNMFCDIGRLSM-AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~-~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                      +.+.++..|...++++++.+...+...- -.--+.++...... +++..|++.++....+....+++.....+...-+.+
T Consensus       110 ~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  110 YFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            8888666699999999999887443221 11112222233233 899999999999999987777766555555555667


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhh----ccccccchhhHHHHH-HHHHHccCCHHHHHHHHHH
Q 022992          162 AAELEQYHKSIEIYEEIARQSLN----NNLLKYGVKGHLLNA-GICQLCKGDVVAITNALER  218 (289)
Q Consensus       162 ~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~gd~~~A~~~~~~  218 (289)
                      +...+..+++++..+++......    +............-+ ..|++..|++..+...++.
T Consensus       189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~  250 (608)
T PF10345_consen  189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ  250 (608)
T ss_pred             HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            77778888999999888532221    111011111111112 3456778887666555444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.014  Score=48.44  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------cCccchH------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN------EEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~------~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                      .+..++..-|.-+..+|+|.+|...|..|+-..+.      .|.+.+.      .-.+.+...++...|+|-++++...+
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            34556777777888889999999999999877653      3444322      23567888999999999999999999


Q ss_pred             HHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHH
Q 022992          178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSD  237 (289)
Q Consensus       178 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~  237 (289)
                      ++....+      ++ .+++..+.+|...-+..+|.+-|...++++|+..  .++|-.++.+
T Consensus       256 iL~~~~~------nv-KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~  310 (329)
T KOG0545|consen  256 ILRHHPG------NV-KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN  310 (329)
T ss_pred             HHhcCCc------hH-HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            9854322      22 3577778888888889999999999999999875  3555554444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.08  E-value=0.018  Score=44.29  Aligned_cols=62  Identities=13%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ..++..++..+...|++++|+..+++++.+.+-+.      .++..+..++...|++.+|++.|++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E------~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDE------EAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            45777888888888999999999999999877543      578889999999999999999999885

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.08  E-value=0.0016  Score=36.56  Aligned_cols=32  Identities=28%  Similarity=0.548  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      ++++..+|.++..+|++++|+.+|++++++.+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45788888888888888888888888888765

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.0097  Score=51.65  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (289)
Q Consensus        37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l  115 (289)
                      --+|.++...|++++|+....+.       ++    ..+..-...+|... +++.|...++...++    ++-    .++
T Consensus       106 ~~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD----~~l  166 (290)
T PF04733_consen  106 LLAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DED----SIL  166 (290)
T ss_dssp             HHHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC----HHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc----HHH
Confidence            34456666678888777766543       22    12333345566555 888888777665332    221    234


Q ss_pred             HHHHHHHHh--c--CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          116 KEIAELYES--E--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       116 ~~la~~~~~--~--g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      .+++..+..  .  +.+.+|...|+...+.+..      ...+++.++.++..+|+|++|.+.+++++...       ..
T Consensus       167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-------~~  233 (290)
T PF04733_consen  167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-------PN  233 (290)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--------CC
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-------cC
Confidence            444444433  2  3689999999886554322      23578899999999999999999999986221       12


Q ss_pred             hhhHHHHHHHHHHccCCH-HHHHHHHHHHhhcCCCC
Q 022992          192 VKGHLLNAGICQLCKGDV-VAITNALERYQDMDPTF  226 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~-~~A~~~~~~~~~~~~~~  226 (289)
                      ....+.+.+.|....|+. +.+.+.+.......|.+
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            234567777777778876 55666776665566654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.00  E-value=0.002  Score=36.97  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ++.+||.+|..+|+|++|+++|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            478999999999999999999999763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.99  E-value=0.21  Score=44.38  Aligned_cols=99  Identities=9%  Similarity=-0.063  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------Ccc--------------chHHHHHHHHHHHHHHhcCHH
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNE-----------EVT--------------TSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-----------~~~--------------~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      ...++.-+..+|++++|.+..++++.-....           +++              ...+..+..+|.++.+.+.|.
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~  345 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG  345 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence            3345666677799999999888887542210           000              111246677888888888888


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +|-++|+.++...        .....+..++.++...|+...|..++++++.
T Consensus       346 kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         346 KASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            8888888776321        1223345567777788888888888887764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.19  Score=42.49  Aligned_cols=127  Identities=17%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      ++.+..+.+-|....++..++.+.        .++.+|+..++..    +.+..|.-+|++.....       .++...+
T Consensus       146 I~lk~~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-------~~T~~ll  210 (299)
T KOG3081|consen  146 ILLKMHRFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-------PPTPLLL  210 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-------CCChHHH
Confidence            334446677777777777666543        4677788877654    57899999999885321       1222334


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-HHc-ccCHHHHHHHHHhccccCCCchhH
Q 022992          197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-SMD-EEDIAKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a~~-~~d~~~~~~al~~~~~~~~~d~~~  267 (289)
                      .....||+++|++++|...++.++.-++..+     .+|.+++. +.- ..|.+.-.+-+......++--||.
T Consensus       211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            4456789999999999999999887554432     34555554 333 444455555554444444433343

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.21  Score=42.61  Aligned_cols=138  Identities=7%  Similarity=0.006  Sum_probs=88.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      +.+|...|++..-.++-...-+.+...-.+ ..+.....+-.-+...  .++.-+..+...++...+......--..-.+
T Consensus        52 ~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K  130 (421)
T COG5159          52 FKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECK  130 (421)
T ss_pred             HHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777776666666666665544322 2233333333333332  6677777777777766665554444445556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +.-.+.+.|.|..|+..-.-.+.-+.+.++......++.-=.-+|....+..++-..+..+
T Consensus       131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA  191 (421)
T COG5159         131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA  191 (421)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence            6667777799999999988888777777766555556665666777777777777766655

>PRK11906 transcriptional regulator; Provisional

Probab=96.90  E-value=0.03  Score=50.87  Aligned_cols=167  Identities=10%  Similarity=0.037  Sum_probs=108.0

Q ss_pred             HHHH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHHH
Q 022992           30 EDAA--DLFDKAANSFKLA--KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCL   95 (289)
Q Consensus        30 ~~A~--~~~~~A~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~~   95 (289)
                      ..|+  ++|..+...+...  ...+.|..+|.+|..... + ++ +-+.+|--++.|+...          +..+|+++.
T Consensus       251 ~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-l-dp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A  327 (458)
T PRK11906        251 KNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-I-QT-LKTECYCLLAECHMSLALHGKSELELAAQKALELL  327 (458)
T ss_pred             ccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-C-Cc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            3666  6666665443321  235677777888872211 0 11 1133444444444221          567889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992           96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY  175 (289)
Q Consensus        96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  175 (289)
                      ++|+++-+...      .++..+|.++...++++.|+..|++|+.+.+.      .+.++...|.+..-.|+.++|++..
T Consensus       328 ~rAveld~~Da------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        328 DYVSDITTVDG------KILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             HHHHhcCCCCH------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99988866443      48888888888889999999999999998764      3468899999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhHHHHHHH-HHHccCCHHHHHHHHHH
Q 022992          176 EEIARQSLNNNLLKYGVKGHLLNAGI-CQLCKGDVVAITNALER  218 (289)
Q Consensus       176 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gd~~~A~~~~~~  218 (289)
                      ++++...      +...+....+..+ .|... -.+.|++.|-+
T Consensus       396 ~~alrLs------P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        396 DKSLQLE------PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHhccC------chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            9987321      2222222334433 44433 35667776644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.88  E-value=0.16  Score=40.39  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=104.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      +..+...+++..+...+.++.......    .....+...+ ++... ++++|+.++.+++...+.   .......+...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~  173 (291)
T COG0457         102 GLLLEALGKYEEALELLEKALALDPDP----DLAEALLALG-ALYELGDYEEALELYEKALELDPE---LNELAEALLAL  173 (291)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHh
Confidence            334444445555555555555433221    1111222221 45444 999999999999542211   12344455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      +..+...++++.++..+.+++...+..     ....+..++..+...++++.|+..+..+......       ....+..
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~  241 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-------NAEALYN  241 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-------cHHHHhh
Confidence            555777799999999999999987663     2356788999999999999999999999743211       1122333


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .+..+...+....+...+.+.....+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         242 LALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            444444667788899898888776654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.87  E-value=0.042  Score=40.48  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH-H----HH
Q 022992           46 AKSWDKAGATYVKLANCHLKLE------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM-A----AR  113 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~-~----a~  113 (289)
                      .|-|++|...+.+|.++.+..-      .....+-++.-++.++..+ ++++++....+|+..|-+-|...+ .    +.
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            3556666667777777765432      1233567788888888777 999999999999999987765421 2    33


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      +..+-|..+...|+.++|+..|+.|.++..+
T Consensus       102 aVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen  102 AVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            4446688888899999999999999998654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.037  Score=47.35  Aligned_cols=102  Identities=11%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhcccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      ++.|.-+|.+|..+|++..|..-|.+|+++..++      ++++..+|.++....   .-.++...+++++....     
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-----  224 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP-----  224 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-----
Confidence            4489999999999999999999999999987653      256778888776542   55778889999974322     


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                        ......+-++..+...||+.+|...++..++..|.-
T Consensus       225 --~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         225 --ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             --ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence              122334556777888999999999999998876653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.088  Score=42.35  Aligned_cols=96  Identities=10%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      ...++..+... ++++|...++.++..   ..|...-+-+-.++|.+...+|.+|+|+..+.       ......+.+..
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~~~~  161 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWAAIV  161 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHHHHH
Confidence            34455555555 999999999988754   23333455566788999988899999888774       33334456666


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ...-|+++...|+-++|...|++++..
T Consensus       162 ~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         162 AELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            778899999999999999999999854

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.81  E-value=0.0035  Score=36.83  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      +.++.++|.+|...|++++|..++++++++.+..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            4678888888888888888888888888887654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.80  E-value=0.29  Score=42.25  Aligned_cols=133  Identities=19%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             CCCHHHHHHHHHHHHH------------HHH----HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---
Q 022992           26 GSKYEDAADLFDKAAN------------SFK----LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---   86 (289)
Q Consensus        26 ~~~~~~A~~~~~~A~~------------~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---   86 (289)
                      .+++..+...+..+..            +|.    ...+..+|...|..+++.    |    ......++|.+|...   
T Consensus        54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g----~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----G----LAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----c----cHHHHHhHHHHHhcCCCc
Confidence            4899999999998863            111    133456666666633322    2    234556688888764   


Q ss_pred             --CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           87 --SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH--------NIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        87 --~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g--------~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                        |+.+|..+|++|...    |+... +.+...+|.++.. |        +...|+.+|.+|.+..        ...+..
T Consensus       126 ~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~-g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~  191 (292)
T COG0790         126 PLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLS-GLQALAVAYDDKKALYLYRKAAELG--------NPDAQL  191 (292)
T ss_pred             ccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHc-ChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHH
Confidence              899999999999765    33222 5567778888776 4        3347888888887664        235678


Q ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992          157 KVAQYAAE----LEQYHKSIEIYEEIAR  180 (289)
Q Consensus       157 ~l~~~~~~----~g~~~~A~~~~~~a~~  180 (289)
                      .+|.+|..    ..++.+|+..|.++..
T Consensus       192 ~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~  219 (292)
T COG0790         192 LLGRMYEKGLGVPRDLKKAFRWYKKAAE  219 (292)
T ss_pred             HHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            89988864    2499999999999973

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.43  Score=43.66  Aligned_cols=120  Identities=17%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             HHHhhccCCCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHccC--CHHH
Q 022992           15 AEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESK-HEAAQAYVDAAHCYKKT--SSNE   90 (289)
Q Consensus        15 A~~~~k~~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~aa~~~~~~a~~~~~~--~~~~   90 (289)
                      +=|++...+-|. |+--+|..-..-...+|...++++.|....++|..+....+.. +.--.++.-++.+|-..  .+..
T Consensus        28 ~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~  107 (629)
T KOG2300|consen   28 CIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPP  107 (629)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCch
Confidence            334444333355 6667888878778888999999999999999999999999876 45566777788888555  6788


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFE  136 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~  136 (289)
                      +....++|+++-  .+.+....+.+..++.++.-..|++.|++.+.
T Consensus       108 ~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  108 AKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            888999999985  46667788899999999999899999999853

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.69  E-value=0.081  Score=40.64  Aligned_cols=96  Identities=13%  Similarity=0.127  Sum_probs=63.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccC-----cc-----------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEE-----VT-----------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~-----~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      |......++.+.++..+++++.++++.-     ..           .....++..++..+...|++++|+..+++++...
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            4444445788888888888888876421     10           1112456677778889999999999999998543


Q ss_pred             hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +.      .. ..+..+..++...|+...|.+.|+++..
T Consensus        93 P~------~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   93 PY------DE-EAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             TT-------H-HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CC------CH-HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            21      11 2345566788899999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.69  E-value=0.0044  Score=34.79  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +.++.++|.++..+|++++|+.+|++++..
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999854

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.024  Score=49.09  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=95.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           57 VKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF  135 (289)
Q Consensus        57 ~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y  135 (289)
                      .+++.....-|.+.+.|..|..=|+-|.+. ++..|+.+|.+.+..  +.+++..-+-+|.|-|-+...+|+|..|+.-.
T Consensus        65 LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dc  142 (390)
T KOG0551|consen   65 LQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDC  142 (390)
T ss_pred             HHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            344444446688899999999999998777 999999999998765  67888899999999999999999999999999


Q ss_pred             HHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .+|+.+-+..      ..++..=+.++..+.++.+|....++..
T Consensus       143 s~al~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  143 SAALKLKPTH------LKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            9999875542      2366777888999999999988887765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.19  Score=46.84  Aligned_cols=137  Identities=12%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------
Q 022992           77 VDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------  146 (289)
Q Consensus        77 ~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~----------  146 (289)
                      +.+=..|+...+++|+.+++..    .+     .--.++.--|.++..+|+|++|+..|+.-+.-...+.          
T Consensus        84 EKAYc~Yrlnk~Dealk~~~~~----~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a  154 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLKGL----DR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA  154 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHhcc----cc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            4433334544888888887711    00     1123556667777777888888888887643221100          


Q ss_pred             ---------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---hccccc---cc--hhhHHHHHHHHH
Q 022992          147 ---------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---NNNLLK---YG--VKGHLLNAGICQ  203 (289)
Q Consensus       147 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~---~~--~~~~~~~~~~~~  203 (289)
                                     .+...-+.+++.+.++...|+|.+|++.++.+...+.   .+....   +.  ..-....+.-++
T Consensus       155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl  234 (652)
T KOG2376|consen  155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL  234 (652)
T ss_pred             HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence                           1122235678888999999999999999999942221   111100   00  111122344566


Q ss_pred             HccCCHHHHHHHHHHHhhc
Q 022992          204 LCKGDVVAITNALERYQDM  222 (289)
Q Consensus       204 l~~gd~~~A~~~~~~~~~~  222 (289)
                      ..+|+..+|...+...+.-
T Consensus       235 Q~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  235 QLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             HHhcchHHHHHHHHHHHHh
Confidence            6789999999988876653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.66  E-value=0.0016  Score=36.86  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992          134 FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE  173 (289)
Q Consensus       134 ~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  173 (289)
                      +|++|+++.+.+.      .+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~------~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNA------EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCH------HHHHHHHHHHHHCcCHHhhcC
Confidence            4788998877643      688999999999999999863

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.64  E-value=0.53  Score=43.09  Aligned_cols=248  Identities=13%  Similarity=0.082  Sum_probs=134.9

Q ss_pred             HHHHHhhccCCCCCCCHHHHHHHHHHHHHHHH------------------------------HcCCHHHHHHHHHHHHHH
Q 022992           13 KKAEKKLNGWGLFGSKYEDAADLFDKAANSFK------------------------------LAKSWDKAGATYVKLANC   62 (289)
Q Consensus        13 ~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~------------------------------~~g~~~~A~~~~~~a~~~   62 (289)
                      .-|.+.+..|.-|+|+ .+|+.+|.+--.-|+                              ..|...-+...|++|.+.
T Consensus       158 ~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  158 AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3445555555567777 677777766532222                              356666777777777665


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH----------------HHHhcCCHHHHHHH-----------
Q 022992           63 HLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN----------------MFCDIGRLSMAARY-----------  114 (289)
Q Consensus        63 ~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~----------------~~~~~g~~~~~a~~-----------  114 (289)
                      +   |+...+...+..-+..-... .++.|.-.|.=|++                .=++-|+..+.-.+           
T Consensus       237 ~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  237 L---GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            4   33333333333333322221 44444444444443                33444665544332           


Q ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Q 022992          115 -----------YKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYA---AELEQYHKSIEIYEEIA  179 (289)
Q Consensus       115 -----------l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~a~  179 (289)
                                 +...-.+....|+.+.-.+.|++|+.-.+... ...+.--++..+-.++   ....+.+.+.+.|+..+
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l  393 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL  393 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                       22233344445899999999999987654422 2233334444444433   25678999999999887


Q ss_pred             HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccc
Q 022992          180 RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDS  259 (289)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~  259 (289)
                      ...+-.   .+.....++..+.--+.+.+...|++.+..+...+|.-.      +...-+..  .-.+..|.+.-+-|..
T Consensus       394 ~lIPHk---kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K------lFk~YIel--ElqL~efDRcRkLYEk  462 (677)
T KOG1915|consen  394 DLIPHK---KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK------LFKGYIEL--ELQLREFDRCRKLYEK  462 (677)
T ss_pred             hhcCcc---cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh------HHHHHHHH--HHHHhhHHHHHHHHHH
Confidence            543222   233333444444444566788999999998887776532      12221111  1113445555555666


Q ss_pred             cCCCchhHHHHHHHHH
Q 022992          260 MTPLDPWKTTLLLRVK  275 (289)
Q Consensus       260 ~~~~d~~~~~~~~~~~  275 (289)
                      +-..+|.+-..|.+-+
T Consensus       463 fle~~Pe~c~~W~kya  478 (677)
T KOG1915|consen  463 FLEFSPENCYAWSKYA  478 (677)
T ss_pred             HHhcChHhhHHHHHHH
Confidence            6666666666665544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.041  Score=47.07  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      ++-+.+....+.++..    .|+-.+   -....|.+|...|+++.|...|.+|..+..+.      ...+...|.++..
T Consensus       136 ~~~~~l~a~Le~~L~~----nP~d~e---gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~  202 (287)
T COG4235         136 QEMEALIARLETHLQQ----NPGDAE---GWDLLGRAYMALGRASDALLAYRNALRLAGDN------PEILLGLAEALYY  202 (287)
T ss_pred             ccHHHHHHHHHHHHHh----CCCCch---hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            4577788888888862    133223   34567889999999999999999999886432      2234444444422


Q ss_pred             --C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992           86 --T--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (289)
Q Consensus        86 --~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~  147 (289)
                        .  +..++...+++|+..-+.      ..+++.-+|..+.+.|+|.+|+..++.-++..+.+..
T Consensus       203 ~a~~~~ta~a~~ll~~al~~D~~------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         203 QAGQQMTAKARALLRQALALDPA------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence              2  778899999999887653      3458888999999999999999999999988776543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.48  Score=42.38  Aligned_cols=219  Identities=14%  Similarity=0.141  Sum_probs=133.8

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992           44 KLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (289)
Q Consensus        44 ~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la  119 (289)
                      ...+++.+|..+-...+.-....+.   ..-+|..|.-+..+|... +...-...+..-+....--++..+.+-..+-+=
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            3456778877776655443222221   234677777777777665 544444444444444444457778888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA  199 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  199 (289)
                      ..|...+.|++|-..-.++.  |+...+-...+..+.-+|.+..-+++|..|.+++-.++...++..  ..+......++
T Consensus       217 r~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~--alGf~q~v~k~  292 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA--ALGFRQQVNKL  292 (493)
T ss_pred             HHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh--hhhHHHHHHHH
Confidence            88887788888888777764  454444446778899999999999999999999999875443221  11211112222


Q ss_pred             -HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992          200 -GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       200 -~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~  275 (289)
                       .++.+.+|++++ +..|.+     |....+-  .--..|..|...||+..|...+..|...-..|..++ .+.|++
T Consensus       293 ~ivv~ll~geiPe-rs~F~Q-----p~~~ksL--~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~-LivRLR  360 (493)
T KOG2581|consen  293 MIVVELLLGEIPE-RSVFRQ-----PGMRKSL--RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT-LIVRLR  360 (493)
T ss_pred             HHHHHHHcCCCcc-hhhhcC-----ccHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch-HHHHHH
Confidence             334566777664 222211     1111111  223456778889999999999998876655554443 334443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.62  E-value=0.0061  Score=34.02  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      .++..+|.++..+|++++|+++|++++..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999854

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.61  E-value=0.26  Score=45.27  Aligned_cols=132  Identities=17%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc----
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI----  105 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~----  105 (289)
                      .|-+...+|++    ..++..-+..-.+|+++....      +.+|.-++.  ... -..+|.++|++|++.-...    
T Consensus       170 ~Aq~IMq~AWR----ERnp~aRIkaA~eALei~pdC------AdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s  237 (539)
T PF04184_consen  170 PAQEIMQKAWR----ERNPQARIKAAKEALEINPDC------ADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKS  237 (539)
T ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhhh------hHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchh
Confidence            44444444443    457777788888888886432      344433221  112 5688888888887665432    


Q ss_pred             ------CCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992          106 ------GRL---------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus       106 ------g~~---------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  170 (289)
                            |..         .....+-..+|++..++|+.++|++.|+.-++.++...    .-.+..+|.+++..+++|.+
T Consensus       238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad  313 (539)
T PF04184_consen  238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYAD  313 (539)
T ss_pred             hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHH
Confidence                  111         11134556899999999999999999999987776432    23478899999999999999


Q ss_pred             HHHHHHHH
Q 022992          171 SIEIYEEI  178 (289)
Q Consensus       171 A~~~~~~a  178 (289)
                      +...+.+-
T Consensus       314 ~q~lL~kY  321 (539)
T PF04184_consen  314 VQALLAKY  321 (539)
T ss_pred             HHHHHHHh
Confidence            99887764

The molecular function of this protein is uncertain.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.59  E-value=0.16  Score=40.73  Aligned_cols=124  Identities=14%  Similarity=0.073  Sum_probs=72.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      ++.....|++.+|...|.+++.-     -+-+....+..+++..... ++..|...+++..+.-+.-.    .......+
T Consensus        96 a~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~Ll~  166 (251)
T COG4700          96 ANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHLLF  166 (251)
T ss_pred             HHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchHHH
Confidence            45555667777777777776632     2222233444555554444 66666666665554433222    23345556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      |..+..+|.+.+|..-|+.++..++..       ......+..+..+|+.++|-.-|..+.
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGP-------QARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            666776777777777777777776542       234456667777777777766665554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.59  E-value=0.0059  Score=36.70  Aligned_cols=33  Identities=9%  Similarity=0.172  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .++..+|..|..+|++++|+..|+++++..+.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            367788888888899999999999888887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.52  E-value=0.22  Score=46.97  Aligned_cols=186  Identities=12%  Similarity=0.101  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHHHccC-------CHHHHHHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD---------AAHCYKKT-------SSNEAISC   94 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~---------~a~~~~~~-------~~~~A~~~   94 (289)
                      +...+..-.+..|...|++++|.+.|++++.--....|+...-.+|..         +...-...       +++-....
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            444555556778889999999999999998776665565444333321         11000011       33444444


Q ss_pred             HHHHHHHHHhcCCHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992           95 LEQAVNMFCDIGRLSM------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (289)
Q Consensus        95 ~~~A~~~~~~~g~~~~------~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (289)
                      |+..++.++..-+...      -...|.+--.+++  |++.+-+..|.+|+.-..-...+......+..+|.+|...|+.
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence            5544433321111111      1112222222332  8899999999999876432222333446788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +.|..+|+++....-.  . --.....+...+..-+...+++.|.+..++++.
T Consensus       404 ~~aRvifeka~~V~y~--~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  404 DDARVIFEKATKVPYK--T-VEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             HHHHHHHHHhhcCCcc--c-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            9999999999632100  0 001234555556555666778888888888765

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=96.37  E-value=0.56  Score=42.96  Aligned_cols=177  Identities=15%  Similarity=0.003  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CH------HHHHHHHHHHHHHHHh
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SS------NEAISCLEQAVNMFCD  104 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~------~~A~~~~~~A~~~~~~  104 (289)
                      -....++|...-..|||+-|..+|.-+..=+..-+.+.-.|.+++-+|.+....  ..      ++...+++.|+..|..
T Consensus       208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            345667889999999999999999999988876666666677777777776444  22      4788899999999988


Q ss_pred             c-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          105 I-----GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       105 ~-----g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      .     ..+.-+.++....+.++...|.+.+|...+-+.....- ..-.+...+-.+.+++.++               +
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~---------------~  352 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY---------------A  352 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh---------------c
Confidence            3     33457888999999999988999888887777765521 1111111334455555555               0


Q ss_pred             HHHHhhcc-cc--cc-chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          179 ARQSLNNN-LL--KY-GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       179 ~~~~~~~~-~~--~~-~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      . .....+ ..  +. ...-.+.-+|.-+...|....|..+|..++.+...
T Consensus       353 ~-~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  353 S-LRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             c-cccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            0 000000 00  01 11122333567788899999999999998876654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.35  E-value=1.2  Score=43.80  Aligned_cols=210  Identities=10%  Similarity=-0.053  Sum_probs=129.0

Q ss_pred             HhhHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFG-SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY   83 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~   83 (289)
                      ..||..++.+++..++-...+. ++....+.  .-.+.+-...|++++|.+....++......- +..-+.++..+|.+.
T Consensus       431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~--aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~~~a~  507 (894)
T COG2909         431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQ--ALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVLGEAA  507 (894)
T ss_pred             hHHHHHHHHHHHHHhCcCcccchhhHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhhhHHH
Confidence            6789999999999988323333 44333332  2234455568999999999999988765543 334456777778877


Q ss_pred             cc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCccch--HHHHHHHH
Q 022992           84 KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTS--ANQCKQKV  158 (289)
Q Consensus        84 ~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~--~A~~~y~~A~~~~~~~~~~~~--~~~~~~~l  158 (289)
                      .- +++.+|..+..++..+.+..+.+.-...+....+.++..+|...  +...-|..--..+-. ..+.+  ...++..+
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~-q~~~~~f~~~~r~~l  586 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE-QKPRHEFLVRIRAQL  586 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-hcccchhHHHHHHHH
Confidence            44 49999999999999999999999999999999999999999322  222222222221111 11111  11222222


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      ...+.   +++.+..-...............+-....+..+..+....||.++|...+.+...
T Consensus       587 l~~~~---r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~  646 (894)
T COG2909         587 LRAWL---RLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER  646 (894)
T ss_pred             HHHHH---HHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            22332   3666655544443222111111111112223556777889999999888887654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.072  Score=46.26  Aligned_cols=115  Identities=13%  Similarity=0.079  Sum_probs=84.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992           98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus        98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                      ++......|.+...|..+..=|.-|....+|..|+.+|.+++.-  .-+++...+.+|.+-+.+...+|+|..|+.-..+
T Consensus        67 slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~  144 (390)
T KOG0551|consen   67 SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA  144 (390)
T ss_pred             HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            44555567888889999999999999989999999999999874  4556666677899999999999999999999999


Q ss_pred             HHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          178 IARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       178 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +....+      ..++ ++.+-+.|++.+..+..|....+..++
T Consensus       145 al~~~P------~h~K-a~~R~Akc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  145 ALKLKP------THLK-AYIRGAKCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHhcCc------chhh-hhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence            874321      1122 334455677766555555555544433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.016  Score=47.99  Aligned_cols=107  Identities=13%  Similarity=0.170  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (289)
Q Consensus        28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g  106 (289)
                      ..+..++-...-|+.+.....|+.|+++|.+|+.+...      -+..+.+=+.||.+. +++.+..-.++|+++.+   
T Consensus         5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~---   75 (284)
T KOG4642|consen    5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP---   75 (284)
T ss_pred             ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh---
Confidence            33444455555577777777889999999999877432      245778888888877 88888888999988865   


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus       107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                         ..++...-+|..+.....+++||..+++|..+.+...
T Consensus        76 ---N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   76 ---NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             ---HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence               3566788888888888999999999999999887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.21  E-value=0.034  Score=48.08  Aligned_cols=123  Identities=12%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  165 (289)
                      ..+.|...|.+|+.    .+.  ..-.++...|.+-.. .++.+.|...|++++..|....      ..+....+.+...
T Consensus        16 g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y~~~l~~~   83 (280)
T PF05843_consen   16 GIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHh
Confidence            56777777777751    111  122456677777333 4666668888888888876543      4566667777888


Q ss_pred             cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       166 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |+.+.|..+|++++......    ......|.+...--..-||.+...+...++.+..+.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~----~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKE----KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCH----HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            88888888888886321110    001222333322233457777777777777666554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.16  E-value=0.17  Score=42.87  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~  125 (289)
                      ..-...++.+.+|.+.+.+.+...-.......+|.-|... ++++|+.+++.+...|++.|.......++..+..|....
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            3456779999999999999888888888888899998777 999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 022992          126 HNIEQTIVFFEKA  138 (289)
Q Consensus       126 g~~~~A~~~y~~A  138 (289)
                      |+.+..+.+.-+.
T Consensus       232 ~~~~~~l~~~leL  244 (247)
T PF11817_consen  232 GDVEDYLTTSLEL  244 (247)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.14  E-value=0.48  Score=42.41  Aligned_cols=174  Identities=11%  Similarity=0.096  Sum_probs=110.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH
Q 022992           96 EQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY  175 (289)
Q Consensus        96 ~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  175 (289)
                      +.=+..++.++-.....+.+..+|.-|...|+.+.|+++|-++-+.....+   .....+.++-.|-+.+|+|..-..+-
T Consensus       134 ~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv~sy~  210 (466)
T KOG0686|consen  134 DNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHVLSYI  210 (466)
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhhhhHH
Confidence            333555666666677788999999999999999999999999877655433   33455667777888899999888888


Q ss_pred             HHHHHHHhhc-cc-cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHHcccCHHHHH
Q 022992          176 EEIARQSLNN-NL-LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSDIAASMDEEDIAKFT  251 (289)
Q Consensus       176 ~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~l~~a~~~~d~~~~~  251 (289)
                      .++....-.. ++ ...+.+ ...-.|++++..+++..|...|-.+.--.-.|+  -++....+...+.|+..-|...+.
T Consensus       211 ~~A~st~~~~~~~~q~v~~k-l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk  289 (466)
T KOG0686|consen  211 SKAESTPDANENLAQEVPAK-LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLK  289 (466)
T ss_pred             HHHHhCchhhhhHHHhcCcc-hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHH
Confidence            7775331000 00 011111 223468889988888888777754311111121  244556677777888766766555


Q ss_pred             HHH---HhccccCCCchhHHHHHHH
Q 022992          252 DVV---KEFDSMTPLDPWKTTLLLR  273 (289)
Q Consensus       252 ~al---~~~~~~~~~d~~~~~~~~~  273 (289)
                      ..+   ..|+.+..++|..+.+|.+
T Consensus       290 ~~vi~n~~Fk~flel~Pqlr~il~~  314 (466)
T KOG0686|consen  290 LNVIKNESFKLFLELEPQLREILFK  314 (466)
T ss_pred             HHHHcchhhhhHHhcChHHHHHHHH
Confidence            333   2344455566776655543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.07  E-value=1.5  Score=45.33  Aligned_cols=161  Identities=12%  Similarity=0.082  Sum_probs=94.3

Q ss_pred             HcCCHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCH--LKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                      ..++.++|...+++|+..-  ++-..-...-.+|.|+=+.|.  .-+.-.+.|++|+.+..       +-..+..|..+|
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd-------~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCD-------AYTVHLKLLGIY 1540 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcc-------hHHHHHHHHHHH
Confidence            4677888888888887653  111112233445555555554  22344455666655432       233667777777


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992          123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC  202 (289)
Q Consensus       123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  202 (289)
                      ...+.+++|.++|++-++-|.+      ...+|...+..+...++-+.|..++.+++.-.+     +........+-+..
T Consensus      1541 ~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-----k~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLP-----KQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----hhhhHHHHHHHHHH
Confidence            7777777777777777776652      224677777777777777777777777763221     11122222233444


Q ss_pred             HHccCCHHHHHHHHHHHhhcCCC
Q 022992          203 QLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       203 ~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      -...||.++++..|+..+.-+|.
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCcc
Confidence            45667777777777666554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.03  E-value=0.04  Score=48.09  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      +..-|.-|..+|.|++||.||.+++.+++-+.      ..+.+-+..|.++++|-.|..-++.++...  .    .-+ .
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~----~Y~-K  166 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALD--K----LYV-K  166 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhh--H----HHH-H
Confidence            45667788888999999999999999877432      245666777888888888888777776321  1    111 2


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      +|.+.+.....+|...+|.+-++.++.+.|.
T Consensus       167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  167 AYSRRMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence            3455566667778888888888888887765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=0.82  Score=38.74  Aligned_cols=141  Identities=17%  Similarity=0.209  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      +.+-|..-.++..++..+        .++..+|..|...    +.+..|.-.|+.-.+-      ...-...++..+.++
T Consensus       152 r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~  217 (299)
T KOG3081|consen  152 RFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCH  217 (299)
T ss_pred             HHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHH
Confidence            455555555555444221        2344444444432    2355666666544332      222335778889999


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH-HHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT-NALERYQDMDPTFSGTREYRLLSDIAAS  241 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~-~~~~~~~~~~~~~~~~~e~~~l~~l~~a  241 (289)
                      ..+|+|++|..+++.++...       ++-...+.|...+-+..|...... +.+......+|.+      .++..+-. 
T Consensus       218 l~~~~~eeAe~lL~eaL~kd-------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h------~~vk~~~e-  283 (299)
T KOG3081|consen  218 LQLGRYEEAESLLEEALDKD-------AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH------PFVKHLNE-  283 (299)
T ss_pred             HHhcCHHHHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc------hHHHHHHH-
Confidence            99999999999999998442       223445667666655666443333 3333333333333      23322211 


Q ss_pred             HcccCHHHHHHHHHhccc
Q 022992          242 MDEEDIAKFTDVVKEFDS  259 (289)
Q Consensus       242 ~~~~d~~~~~~al~~~~~  259 (289)
                          -...|.+.+..|+.
T Consensus       284 ----keaeFDrl~~qy~~  297 (299)
T KOG3081|consen  284 ----KEAEFDRLVLQYDT  297 (299)
T ss_pred             ----HHHHHHHHHHHhcc
Confidence                13567777777654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.99  E-value=0.0033  Score=35.55  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           94 CLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTI  132 (289)
Q Consensus        94 ~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~  132 (289)
                      +|++|+++.+.+..      ++.++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~------a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAE------AYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHH------HHHHHHHHHHHCcCHHhhc
Confidence            47888888876655      9999999999999999986

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.98  E-value=0.026  Score=31.46  Aligned_cols=30  Identities=13%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .++..+|.++..+|++++|+++|++++...
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            578899999999999999999999998543

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.96  E-value=0.029  Score=44.52  Aligned_cols=51  Identities=25%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHh
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~  143 (289)
                      -+++|+.-|+.|+.+-+...+      ++.++|..|..+    .+..+|-.+|++|.+.|.
T Consensus        50 miedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            467888888888888776554      677777776654    334445555555555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=95.95  E-value=1.9  Score=42.44  Aligned_cols=182  Identities=10%  Similarity=-0.010  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      +.++...+.+....|++++|..+...+.+..+..+.+.-+..+...-+.+....   -+.+...-+...-....... +.
T Consensus       497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~-~~  575 (894)
T COG2909         497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK-PR  575 (894)
T ss_pred             hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence            445555678888999999999999999999999998888777776666666443   22222222222222211111 11


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NL  187 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~  187 (289)
                      ..-.....+...+.. -+++.+..-....+++-...... ....-.+..++.+....|++++|.....+........ ..
T Consensus       576 ~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~  654 (894)
T COG2909         576 HEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH  654 (894)
T ss_pred             chhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence            111111122222222 23566655555565553332222 2222223589999999999999999998886433222 11


Q ss_pred             cccchhhHHHHHH-HHHHccCCHHHHHHHHHH
Q 022992          188 LKYGVKGHLLNAG-ICQLCKGDVVAITNALER  218 (289)
Q Consensus       188 ~~~~~~~~~~~~~-~~~l~~gd~~~A~~~~~~  218 (289)
                      +.+...  -..+. ...+.+||...+..-..+
T Consensus       655 ~~~~a~--~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         655 VDYLAA--AYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             chHHHH--HHHhhHHHhcccCCHHHHHHHHHh
Confidence            112111  12222 334567888877666655

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.90  E-value=0.34  Score=46.13  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~------~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                      ...+..+|..++..    |+    ..+...+|.+|..+      |++.|+.+++.|..-+.+.- ..+-..+...+|.+|
T Consensus       228 ~~~a~~~~~~~a~~----g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y  298 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL----GH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLY  298 (552)
T ss_pred             hhHHHHHHHHHHhh----cc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHH
Confidence            34566666665544    22    44566778887544      89999999999988422210 001223567788888


Q ss_pred             Hhc----C-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          123 ESE----H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       123 ~~~----g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      ...    . ++..|+.+|.+|.+.-    .+    ++...+|.++..-.   ++..|.++|..+..         .+...
T Consensus       299 ~~g~~~~~~d~~~A~~~~~~aA~~g----~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---------~G~~~  361 (552)
T KOG1550|consen  299 LQGLGVEKIDYEKALKLYTKAAELG----NP----DAQYLLGVLYETGTKERDYRRAFEYYSLAAK---------AGHIL  361 (552)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhcC----Cc----hHHHHHHHHHHcCCccccHHHHHHHHHHHHH---------cCChH
Confidence            873    2 7788999999997752    22    46678888887544   68899999999962         23344


Q ss_pred             HHHHHHHHHHc----cCCHHHHHHHHHHHhhcC
Q 022992          195 HLLNAGICQLC----KGDVVAITNALERYQDMD  223 (289)
Q Consensus       195 ~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~  223 (289)
                      .+.+++.|+..    .-+...|...+.++.+..
T Consensus       362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            56677777653    237778888888876644

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.89  E-value=0.015  Score=32.09  Aligned_cols=30  Identities=13%  Similarity=0.313  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      ++..+|.++...|++++|+..|++.++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            344555555555555555555555555444

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.82  E-value=0.75  Score=39.70  Aligned_cols=149  Identities=16%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la  119 (289)
                      ..+++..+...+.++..    .++    +.....++.+|...     +..+|+.+|+.+.+.        +.+....++|
T Consensus        53 ~~~~~~~a~~~~~~a~~----~~~----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~a~~~lg  116 (292)
T COG0790          53 YPPDYAKALKSYEKAAE----LGD----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAEALFNLG  116 (292)
T ss_pred             ccccHHHHHHHHHHhhh----cCC----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHHHHHhHH
Confidence            45677778888777776    222    25667788888665     788899998844332        2344666799


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----c---CHHHHHHHHHHHHHHHhhcccc
Q 022992          120 ELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----E---QYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       120 ~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      .++..    ..|+.+|..+|++|.+.--..+     +.+...++.++..-    +   +...|+..|.++....      
T Consensus       117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------  185 (292)
T COG0790         117 LMYANGRGVPLDLVKALKYYEKAAKLGNVEA-----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------  185 (292)
T ss_pred             HHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc------
Confidence            99887    3489999999999987532211     34467777777653    1   3347888888886321      


Q ss_pred             ccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcC
Q 022992          189 KYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMD  223 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~  223 (289)
                         ......++|.+|..    ..|..+|..-|.++.+..
T Consensus       186 ---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         186 ---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             ---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence               23345677777643    237889999999987754

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.75  E-value=0.035  Score=48.41  Aligned_cols=94  Identities=16%  Similarity=0.060  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      -|+-|..+|.|++|++||.+++.++...      ...+.+-+.+|.+. .+..|..-+..|+.+..      .-.+++..
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSR  170 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSR  170 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHH
Confidence            3677888999999999999999886532      23455556667665 77777777777777644      35567778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      -|..-..+|...+|-+-|+.++++-+.
T Consensus       171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  171 RMQARESLGNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence            888888889999999999999987654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=1.7  Score=39.95  Aligned_cols=138  Identities=17%  Similarity=0.155  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCcc
Q 022992           73 AQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        73 a~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +.++..+|..++..   ...++|.|.+-.   +.-.-...-.+++...+|.++.. ..+.+.|-.++++|..+.+..++.
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~---~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f   83 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAI---FQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF   83 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH
Confidence            34445555555554   334444444432   22222333456666666655433 356677777777776666655544


Q ss_pred             -chHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHH
Q 022992          149 -TSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNAL  216 (289)
Q Consensus       149 -~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~  216 (289)
                       ....+...-++.+|.... .++.|-...++++....+.+   +=....++.++.++....|++.|.+.+
T Consensus        84 ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen   84 YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence             333445555666666555 55666666666664432221   122234445555565566666666553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.65  E-value=0.26  Score=45.84  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (289)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g  126 (289)
                      +.+.|.+........|.+      -+-.+...|.+++.. ++++|++++++|+..-  ...++-..-++..+|.++.-+.
T Consensus       248 ~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             CHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHHHHc
Confidence            344455555555444432      233455567777655 9999999999998432  3334455678999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY-------HKSIEIYEEIA  179 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~  179 (289)
                      ++++|.++|.+-.+.     +..+.+-.....|.++..+|+.       ++|.+++.++-
T Consensus       320 ~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             hHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            999999999887763     2224455667888899999988       88888988884

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=1.5  Score=38.87  Aligned_cols=227  Identities=14%  Similarity=0.068  Sum_probs=118.5

Q ss_pred             CCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH----------HHHHhcCCHHHHHHHHHH
Q 022992           24 LFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA----------NCHLKLESKHEAAQAYVD   78 (289)
Q Consensus        24 ~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~----------~~~~~~~~~~~aa~~~~~   78 (289)
                      .|- |||.+|+..|..+              +-++-..|.|.+|...-.+|.          .+..++|+.......+.+
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~  146 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS  146 (557)
T ss_pred             HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            355 9999999999877              455667888999888777663          334577887777777777


Q ss_pred             HHHHHccC----CHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           79 AAHCYKKT----SSNEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        79 ~a~~~~~~----~~~~A~~~~~~A~~~~~~~-g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      ++......    ...=...+|+.|+++|.+. -+...-...-+.+|.||.++.=|+-+-+...-=+.-+   ++...   
T Consensus       147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSti---  220 (557)
T KOG3785|consen  147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTI---  220 (557)
T ss_pred             HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHH---
Confidence            76655322    2222334455555555432 1122233345667777777655554444332222222   22111   


Q ss_pred             HHHHHHHHHHH--hcC----------------HHHHHHHHHHHH--------HHHhhccccccchhhHHHHHHHHHHccC
Q 022992          154 CKQKVAQYAAE--LEQ----------------YHKSIEIYEEIA--------RQSLNNNLLKYGVKGHLLNAGICQLCKG  207 (289)
Q Consensus       154 ~~~~l~~~~~~--~g~----------------~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~g  207 (289)
                      +.+-.+..+.+  .|+                |+.+..+.+.-+        ...+=+++.+ -..++.+++.+.|+.++
T Consensus       221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~-~IPEARlNL~iYyL~q~  299 (557)
T KOG3785|consen  221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK-HIPEARLNLIIYYLNQN  299 (557)
T ss_pred             HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh-hChHhhhhheeeecccc
Confidence            11222222211  122                222222221110        0000011111 12345567777889999


Q ss_pred             CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH---cccCHHHHHHHHHhccccCCC
Q 022992          208 DVVAITNALERYQDMDPTFSGTREYRLLSDIAASM---DEEDIAKFTDVVKEFDSMTPL  263 (289)
Q Consensus       208 d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~---~~~d~~~~~~al~~~~~~~~~  263 (289)
                      |..+|......   +.|.   ++.-.++..+.-+-   +.|..+.+..|.+-|.-++..
T Consensus       300 dVqeA~~L~Kd---l~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S  352 (557)
T KOG3785|consen  300 DVQEAISLCKD---LDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES  352 (557)
T ss_pred             cHHHHHHHHhh---cCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence            99888776644   3333   33333455554332   467778888888877776654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.61  E-value=0.03  Score=30.81  Aligned_cols=29  Identities=17%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +++.++|.++...|++++|++.|++++..
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.61  E-value=0.036  Score=32.28  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +.++.++|.+|..+|++++|..++++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            358899999999999999999999999743

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.55  E-value=0.4  Score=45.43  Aligned_cols=19  Identities=16%  Similarity=0.326  Sum_probs=12.4

Q ss_pred             HHHHHhcCHHHHHHHHHHH
Q 022992          160 QYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~a  178 (289)
                      +++++.++|++|..+.++.
T Consensus       781 qlHve~~~W~eAFalAe~h  799 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKH  799 (1081)
T ss_pred             hheeecccchHhHhhhhhC
Confidence            4556677777777765554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.08  Score=43.93  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      ..-|+.+... .++.|+.+|.+|+.+-+.      .+..+.|-+.+|.+..+++.+..-..+|+++...      .....
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h   81 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAH   81 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHH
Confidence            3335555444 899999999999988764      3458899999999999999999999999998654      33567


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .-+|........|++||..++++....
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            889999999999999999999995433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.42  E-value=1.7  Score=44.94  Aligned_cols=155  Identities=12%  Similarity=0.149  Sum_probs=111.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .|.-+.-...|++|....       .+-..|..+..+|... .+++|.++++.-+.-|.      +.-..|...|..+..
T Consensus      1510 yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLR 1576 (1710)
T ss_pred             hCcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhc
Confidence            355566677777777664       2345778888888777 88899999887776665      344588888998888


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      +.+-+.|...+.+|+...+...    -.+...+.+++-.+.|+.+.+..+|+..+...+.    +   ...|.-..-.-.
T Consensus      1577 ~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK----R---tDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK----R---TDLWSVYIDMEI 1645 (1710)
T ss_pred             ccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc----c---hhHHHHHHHHHH
Confidence            7888888899999999887632    2356778888888999999999999887633211    1   123333333445


Q ss_pred             ccCCHHHHHHHHHHHhhcCC
Q 022992          205 CKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~~~~~~  224 (289)
                      ..|+...++..|++.+.+.-
T Consensus      1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             ccCCHHHHHHHHHHHHhcCC
Confidence            67788888888888877743

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=1.9  Score=37.81  Aligned_cols=237  Identities=9%  Similarity=0.089  Sum_probs=142.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~  116 (289)
                      .+..|...|+..+-.+.....-..+...+. ..++.....+...+...  .++.-+..+...++-..+......--..-.
T Consensus        54 l~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea  132 (411)
T KOG1463|consen   54 LGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA  132 (411)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            367788888888877777777766665543 23455556666655444  566777777777777666666555555566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--Hhhccccccchhh
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ--SLNNNLLKYGVKG  194 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~  194 (289)
                      ++..+|...++|.+|+..-..-+.-+++.++.....++..-=.-+|..+.+..+|-..+..+-..  ...-|+ ..+ +.
T Consensus       133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-qlQ-a~  210 (411)
T KOG1463|consen  133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-QLQ-AT  210 (411)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH-HHH-HH
Confidence            77788888899999999999888888877766555555555556677777788877776655311  111110 000 00


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-------------------------------------CchHHHHHHH
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS-------------------------------------GTREYRLLSD  237 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-------------------------------------~~~e~~~l~~  237 (289)
                      .-+.-|+.|....|+.-|-..|-++.+-+....                                     .++.-..+..
T Consensus       211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka  290 (411)
T KOG1463|consen  211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA  290 (411)
T ss_pred             HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence            011112222222233332222222211111110                                     1233445667


Q ss_pred             HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      +.+++.+.++..|+.|+..|..--..||.-+.-+..+-+.|
T Consensus       291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~l  331 (411)
T KOG1463|consen  291 VAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNL  331 (411)
T ss_pred             HHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHH
Confidence            77788888899999999999888778888776666555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.22  E-value=0.035  Score=33.21  Aligned_cols=32  Identities=9%  Similarity=-0.009  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      .++..+|.+|..+|++++|++.|++++....+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            46788999999999999999999999866543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.7  Score=39.16  Aligned_cols=130  Identities=12%  Similarity=0.073  Sum_probs=96.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           42 SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (289)
Q Consensus        42 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~  120 (289)
                      +..-.|.|.-+.+.+.+..+-     ++...-.....+|.+-.+. |.+.|..++++.-..--+.+......-+..+.+.
T Consensus       186 ~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  186 CLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            344456667777777777663     2223344556677777666 8888888988776665566666677888889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      +|.-.+++.+|...|.+.+.....+      +.+.++-+-|+..+|+...|++..+.+..+.
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9998899999999999887654432      2356788889999999999999999987543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.10  E-value=1.6  Score=37.18  Aligned_cols=232  Identities=9%  Similarity=0.091  Sum_probs=135.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      ||.+---++|..-|.   ...++++|+..|.+.+++-..-|+|..  .++.++..++... ++++-++.|.+.+...+..
T Consensus        24 pdVDlENQYYnsK~l---~e~~p~~Al~sF~kVlelEgEKgeWGF--KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA   98 (440)
T KOG1464|consen   24 PDVDLENQYYNSKGL---KEDEPKEALSSFQKVLELEGEKGEWGF--KALKQMIKINFRLGNYKEMMERYKQLLTYIKSA   98 (440)
T ss_pred             CCcchHhhhhccccc---cccCHHHHHHHHHHHHhcccccchhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            555544444443221   234789999999999999766666644  3566777777666 9999999999988876643


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      =...-.-++.+.+-.......+.+--.++|+-.++..+...+.+.....-.++|.+|...|+|.+-.+++.+.-..+...
T Consensus        99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e  178 (440)
T KOG1464|consen   99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE  178 (440)
T ss_pred             HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence            21111223444444444444555666678888888777655444444456789999999999988888777663222111


Q ss_pred             cc---cccchh--hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH--cccCH----HHHHHHH
Q 022992          186 NL---LKYGVK--GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM--DEEDI----AKFTDVV  254 (289)
Q Consensus       186 ~~---~~~~~~--~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~----~~~~~al  254 (289)
                      ..   .+-++.  +.|.--...|..+.+-..-...|+.++.+....++-.---+++.++--+  ..|..    ..|=+|-
T Consensus       179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF  258 (440)
T KOG1464|consen  179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF  258 (440)
T ss_pred             cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence            10   011111  1111113455566665666677888877766655322122233333211  23332    3455677


Q ss_pred             HhccccCCC
Q 022992          255 KEFDSMTPL  263 (289)
Q Consensus       255 ~~~~~~~~~  263 (289)
                      +.|+..+..
T Consensus       259 KNYDEsGsp  267 (440)
T KOG1464|consen  259 KNYDESGSP  267 (440)
T ss_pred             hcccccCCc
Confidence            777777653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.98  E-value=0.52  Score=38.82  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ...-|..+..-|.+|...|-..-|.--|.+++.+.+..      +.+++-+|..+...|+|+.|.+.|....
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            34455566666666666666666666666666665542      3566666666666677777776666665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.90  E-value=2.7  Score=40.44  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=36.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hcC----CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992           37 DKAANSFKLAKSWDKAGATYVKLANCHL-----KLE----SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQA   98 (289)
Q Consensus        37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~----~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A   98 (289)
                      +.|...|....+-|-|++.+.+..+.++     +.|    +..+--.++.++|..+... .+++|.++|.+.
T Consensus       751 eeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  751 EEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444455555555666666665555543     121    3344556778888877665 777887777654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.84  E-value=2.9  Score=37.65  Aligned_cols=194  Identities=13%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           59 LANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEK  137 (289)
Q Consensus        59 a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~  137 (289)
                      =++-++...-....-.++..+|.-|... +++.|+.+|-++.+.....+.   .+..+.++-.+-...|++-....+-.+
T Consensus       136 eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~  212 (466)
T KOG0686|consen  136 ELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISK  212 (466)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence            3444443333334456888889888766 999999999998887765554   333444443444444565555555555


Q ss_pred             HHHHH---hcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHccCCHHHH
Q 022992          138 AADMF---QNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAI  212 (289)
Q Consensus       138 A~~~~---~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gd~~~A  212 (289)
                      |...-   ... ........|+.  |.....+++|..|.++|-.+.....+ +...  ...+.-...|+|-+..=|...-
T Consensus       213 A~st~~~~~~~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~~~~~d~~~iv--tpsdv~iYggLcALAtfdr~~L  288 (466)
T KOG0686|consen  213 AESTPDANENLAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAEFDHCDYPEIV--TPSDVAIYGGLCALATFDRQDL  288 (466)
T ss_pred             HHhCchhhhhHHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCCCCccCcccee--cchhhHHHHhhHhhccCCHHHH
Confidence            54431   110 01112223444  44455566999999988776421111 1110  0111122346666654443322


Q ss_pred             ------HHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHH
Q 022992          213 ------TNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT  268 (289)
Q Consensus       213 ------~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~  268 (289)
                            -..|+.++++.|+         +..++..+..+....+-+.++.-..--.+|+--.
T Consensus       289 k~~vi~n~~Fk~flel~Pq---------lr~il~~fy~sky~~cl~~L~~~k~~llLD~yLa  341 (466)
T KOG0686|consen  289 KLNVIKNESFKLFLELEPQ---------LREILFKFYSSKYASCLELLREIKPRLLLDMYLA  341 (466)
T ss_pred             HHHHHcchhhhhHHhcChH---------HHHHHHHHhhhhHHHHHHHHHHhccceeechhcc
Confidence                  2345555555544         4455555555555555555544343333454333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.77  E-value=0.088  Score=49.07  Aligned_cols=97  Identities=8%  Similarity=0.040  Sum_probs=56.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.++...|+...|+.++++|+...+....     ..+.+++.++...|-...|-+++.+++.....       ..-.++.
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-------epl~~~~  681 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSS-------EPLTFLS  681 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-------CchHHHh
Confidence            44455557777777777777665544322     23456666666666666666666666533211       1222344


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .|..++...|.++|.++|..++...+.-.
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLTTKCP  710 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence            56666666677777777777666655543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.76  E-value=0.8  Score=46.71  Aligned_cols=182  Identities=10%  Similarity=-0.003  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHL-KLE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRL  108 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~-~~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~  108 (289)
                      +-+.+.+......|.|.++.+ .-+++.++. ..| .....+.+|..++.++-+. +.++|+.+..+|+-+..+.  -+.
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            344555666667788888888 677777765 222 2345688899999988776 9999999999999888765  356


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---h
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS---L  183 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~  183 (289)
                      ......+.+++......++...|+..+.+|..+..-. + ..+.-+.+..+++.++...++++.|+++.+.+....   .
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            6788889999988888889999999999998874322 1 233445577899999999999999999999997422   1


Q ss_pred             hccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          184 NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      +..  .......+...+..+-+.+|+..|......
T Consensus      1092 g~~--~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1092 GPK--ELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred             Ccc--chhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            111  111112222334455556666665544443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.74  E-value=0.063  Score=31.10  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .++..+|.+-...++|++|+.-|++|+++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777777777543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>smart00028 TPR Tetratricopeptide repeats

Probab=94.70  E-value=0.043  Score=29.05  Aligned_cols=29  Identities=14%  Similarity=0.313  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      ++..+|.++...+++++|+.+|++++.+.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            55667777777777777777777776653

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.61  E-value=0.91  Score=36.88  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      .-+.....+|..|.. .|.++++.+|-+++++.......  -++++..|+.++..+|+++.|-
T Consensus       139 ~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~--n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNF--NPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHhcchhhhh
Confidence            457788899999997 89999999999999998766433  2578999999999999999873

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.59  E-value=3.7  Score=37.82  Aligned_cols=188  Identities=13%  Similarity=0.113  Sum_probs=96.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      ++++..|...|++|++.-      ..-...+..-+.+-.+. ....|...+.+|+.+.++.++      .+.+--.+-+.
T Consensus        86 q~e~~RARSv~ERALdvd------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq------lWyKY~ymEE~  153 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ------LWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH------HHHHHHHHHHH
Confidence            344455555555555442      12233455555555555 778888999999988887654      66666666666


Q ss_pred             cCCHHHHHHHHHHHHHHHhccC--------------------------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEE--------------------------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +|+..-|...|++=++.-+...                          ..+-....+.+.+.+-.+.|....|...|+++
T Consensus       154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            6777777777766554433211                          00111123333444444555566666666665


Q ss_pred             HHHHhhccccccchhhHHHHHHHHHH--ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH--cccCHHHHHHHH
Q 022992          179 ARQSLNNNLLKYGVKGHLLNAGICQL--CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM--DEEDIAKFTDVV  254 (289)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~l--~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~~~~~~al  254 (289)
                      +... ++   . .....++.+ .++.  .+.++++|+-.|.-+++-.|+    .....|..-..++  ..||...++.++
T Consensus       234 ie~~-~~---d-~~~e~lfva-FA~fEe~qkE~ERar~iykyAld~~pk----~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  234 IEFL-GD---D-EEAEILFVA-FAEFEERQKEYERARFIYKYALDHIPK----GRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHh-hh---H-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            5321 11   0 111222221 2222  244667777777777664433    1122233333444  367766666665


Q ss_pred             H
Q 022992          255 K  255 (289)
Q Consensus       255 ~  255 (289)
                      -
T Consensus       304 v  304 (677)
T KOG1915|consen  304 V  304 (677)
T ss_pred             h
Confidence            3

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.57  E-value=1  Score=37.13  Aligned_cols=96  Identities=4%  Similarity=-0.078  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      +-+.+.-.=|..|...|-+.-|..-|.+++.+..++      +..++-+|..+... +++.|.+.|...+++.+..+-  
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y--  134 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--  134 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--
Confidence            334444445788888888888888888888886654      56788888887666 999999999988888664443  


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKA  138 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A  138 (289)
                          +..|-|..+.--|+++-|.+-+.+-
T Consensus       135 ----a~lNRgi~~YY~gR~~LAq~d~~~f  159 (297)
T COG4785         135 ----AHLNRGIALYYGGRYKLAQDDLLAF  159 (297)
T ss_pred             ----HHhccceeeeecCchHhhHHHHHHH
Confidence                4444455444447777766655443

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=3  Score=36.60  Aligned_cols=172  Identities=12%  Similarity=0.179  Sum_probs=104.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHH-HHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQ-YAAE  164 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~-~~~~  164 (289)
                      |.++|+++.++..+-......++....+...+|.++...||..++.+.....-......... ...-..++.++. +|..
T Consensus        90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~  169 (380)
T KOG2908|consen   90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK  169 (380)
T ss_pred             cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999888887766554433 324445666665 4445


Q ss_pred             hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHH
Q 022992          165 LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS--GTREYRLLSDIAASM  242 (289)
Q Consensus       165 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~--~~~e~~~l~~l~~a~  242 (289)
                      .|++...-...-+-+.-..-+..+...-....+-+++.-+ .||-.   =-|.+.+ .+|.+.  ..-+.+.+..++.|+
T Consensus       170 ~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aAL-LGe~i---yNfGELL-~HPilesL~gT~~eWL~dll~Af  244 (380)
T KOG2908|consen  170 IGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAAL-LGENI---YNFGELL-AHPILESLKGTNREWLKDLLIAF  244 (380)
T ss_pred             HHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hcccc---ccHHHHH-hhHHHHHhcCCcHHHHHHHHHHh
Confidence            6676653332222211000001101010111122333322 34310   0122211 122221  112346688999999


Q ss_pred             cccCHHHHHHHHHhccccCCC
Q 022992          243 DEEDIAKFTDVVKEFDSMTPL  263 (289)
Q Consensus       243 ~~~d~~~~~~al~~~~~~~~~  263 (289)
                      ..||...|+.-...|....-+
T Consensus       245 n~Gdl~~f~~l~~~~~~~p~L  265 (380)
T KOG2908|consen  245 NSGDLKRFESLKGVWGKQPDL  265 (380)
T ss_pred             ccCCHHHHHHHHHHhccCchH
Confidence            999999999999888874434

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.29  Score=40.93  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------CHH------HHHHHHHHHHHHHccC-CHHHHHHHHHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE------SKH------EAAQAYVDAAHCYKKT-SSNEAISCLEQ   97 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~------~aa~~~~~~a~~~~~~-~~~~A~~~~~~   97 (289)
                      .|.....+-|+-+...|+|.+|..+|..|+.+.+++-      ++.      ...-.+.|...|+... ++-+++++...
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            6788888889999999999999999999999887542      211      0112334444444433 55555555444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           98 AVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        98 A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+..++.+      -++|..-|..+...=+..+|..-|.+++++.+
T Consensus       256 iL~~~~~n------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  256 ILRHHPGN------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HHhcCCch------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            44433322      23455555555444455555555555555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.30  E-value=0.52  Score=40.70  Aligned_cols=127  Identities=11%  Similarity=0.160  Sum_probs=89.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      .+..+..+..+.|...|.+|..    .+.  ..-..|...|.+-.. . +.+.|...|+.++..|....+      .+..
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~----~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------~~~~   75 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARK----DKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------FWLE   75 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC----CCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------HHHH
T ss_pred             HHHHHHhCChHHHHHHHHHHHc----CCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------HHHH
Confidence            3455555668889999999862    111  112356667777433 3 878899999999999886554      6666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      -...+...++.+.|...|++++......   .....++.....+=...|+.+...+++++....
T Consensus        76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~---~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   76 YLDFLIKLNDINNARALFERAISSLPKE---KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHCCTSSCH---HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6677778899999999999998764332   113457888888888899999999999888643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=4.2  Score=36.68  Aligned_cols=134  Identities=10%  Similarity=0.043  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      +|.-....|...|+...-..++..-+....--++..+.+...+-+-..|... .++.|-...-++  .|+........|+
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~--~~pe~~snne~AR  248 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS--VYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc--cCccccccHHHHH
Confidence            3444445566666655555555554444332225566666666666666554 455554443332  3444545558899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  170 (289)
                      .+.-+|.+..-+++|..|.+++-+|+...+........-.+...+..+-..+|++.+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPe  305 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPE  305 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence            999999999999999999999999999888644433333444444445555676664

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=94.15  E-value=2  Score=44.95  Aligned_cols=147  Identities=16%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----C---------------------
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----S---------------------   87 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~---------------------   87 (289)
                      ......|..|...|+|.+|+..|..|+++.+..+|+.--|.+++.++.+..-.     +                     
T Consensus       243 R~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s  322 (1185)
T PF08626_consen  243 RLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSS  322 (1185)
T ss_pred             hhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccC
Confidence            34445678888899999999999999999999998887777877776542100     1                     


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHhcC------C-HHHHHHHHHHHHHHHHhcC---
Q 022992           88 -------------------------------SNEAISCLEQAVNMFCDIG------R-LSMAARYYKEIAELYESEH---  126 (289)
Q Consensus        88 -------------------------------~~~A~~~~~~A~~~~~~~g------~-~~~~a~~l~~la~~~~~~g---  126 (289)
                                                     +..-.+.+++++.+|.+..      . ..-...+..+++.++....   
T Consensus       323 ~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~  402 (1185)
T PF08626_consen  323 PRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSD  402 (1185)
T ss_pred             cccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhccc
Confidence                                           1122334556666665543      1 1234566677777766655   


Q ss_pred             -----------------CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          127 -----------------NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       127 -----------------~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                                       ...++..+..+++.+--..=.......++..++.+|..+|-..++.=+.+.++.
T Consensus       403 ~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~  473 (1185)
T PF08626_consen  403 NLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV  473 (1185)
T ss_pred             chhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                             677888888888876543334455667888889999888888777776666653

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.11  E-value=0.65  Score=31.50  Aligned_cols=34  Identities=15%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|..+...|.-....|+|++|+.+|..|++.+..
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4455666667777779999999999999998854

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.97  E-value=2.6  Score=35.94  Aligned_cols=114  Identities=13%  Similarity=-0.020  Sum_probs=67.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .+++|++|++.....+..+-+.|....++....-+..+|.+.                   +...... ...++..++..
T Consensus         2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-------------------~~~~~~~-~~~rl~~l~~~   61 (260)
T PF04190_consen    2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-------------------EDPVDEE-SIARLIELISL   61 (260)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-------------------T---SHH-HHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-------------------CCCCCHH-HHHHHHHHHHh
Confidence            467888888888888888888877766666665556666543                   2111111 12333444433


Q ss_pred             cCCH-HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          125 EHNI-EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       125 ~g~~-~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      ...- ++-..+..+|+.-.+..+.+.+-+..+..+|.++.+.|++.+|..+|-..
T Consensus        62 ~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~  116 (260)
T PF04190_consen   62 FPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG  116 (260)
T ss_dssp             S-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred             CCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence            3221 22345556666655444556677789999999999999999988877433

; PDB: 3LKU_E 2WPV_G.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.91  E-value=0.64  Score=47.36  Aligned_cols=149  Identities=12%  Similarity=0.062  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-C
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL-E-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-G  106 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g  106 (289)
                      +-.++|...+.++-..|++++|+..-.++.-+..+. | +.......|.+++...... ....|+..+.++..+..-. |
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence            456677777888889999999999999998887754 2 5567788888888766555 7788888888887665322 2


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          107 -RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       107 -~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                       +....+..-.+++.++...++++.|+++.+.|+.+-....-  ...-+.++..++.++..++++..|+.......
T Consensus      1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred             CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence             35567778889999998889999999999999997665432  22334567788888888888888887665553

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.75  E-value=0.68  Score=31.29  Aligned_cols=29  Identities=17%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      .--...|++++|+++|.+|++.+-...++
T Consensus        14 ~~eD~~gny~eA~~lY~~ale~~~~ekn~   42 (75)
T cd02680          14 FDEDEKGNAEEAIELYTEAVELCINTSNE   42 (75)
T ss_pred             HHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence            33344599999999999999998764333

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.69  E-value=0.6  Score=37.18  Aligned_cols=93  Identities=16%  Similarity=0.053  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY---HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      ++.|.+.++.+...-+.+      ++.+.+=|.++..+.++   .++.+++++++......-.....-..++.++|.++.
T Consensus         7 FE~ark~aea~y~~nP~D------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            355566666555543332      34556666655554333   344455555432111100001122345667777665


Q ss_pred             cc----CC-------HHHHHHHHHHHhhcCCCC
Q 022992          205 CK----GD-------VVAITNALERYQDMDPTF  226 (289)
Q Consensus       205 ~~----gd-------~~~A~~~~~~~~~~~~~~  226 (289)
                      ..    +|       +.+|..+|+++..+.|..
T Consensus        81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            43    23       456677777777777663

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.94  E-value=5.9  Score=34.60  Aligned_cols=153  Identities=13%  Similarity=0.162  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  187 (289)
                      ...-.....++|.+|.+.++..+|..+-.++.=+.....+..-....-.=.+.++-..++|-+|...|-+.......+..
T Consensus       140 ~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~  219 (399)
T KOG1497|consen  140 VEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDES  219 (399)
T ss_pred             hHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            33445567788999999999999999999987665544433333333333455566678898998888777654433321


Q ss_pred             cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH-H-HcccCHHHHHHHHHhccccCCCc
Q 022992          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA-S-MDEEDIAKFTDVVKEFDSMTPLD  264 (289)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~-a-~~~~d~~~~~~al~~~~~~~~~d  264 (289)
                         .-..++.++..|-+..+-.++=.+.+.. +-.+++...-+-+.++..+.. - +...+.+.|..-+..+...+..|
T Consensus       220 ---~~~~aL~~a~~CtlLA~~gpqrsr~Lat-lfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~d  294 (399)
T KOG1497|consen  220 ---ERLEALKKALQCTLLASAGPQRSRMLAT-LFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMD  294 (399)
T ss_pred             ---HHHHHHHHhHhheeecCCChHHHHHHHH-HhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccC
Confidence               1122344455554433322222233322 223344332222334444432 1 23555677777777766666443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.91  Score=43.03  Aligned_cols=96  Identities=13%  Similarity=0.144  Sum_probs=66.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.-+.+..+|..++++|..++..+..+.....-+...+.+..+|..+.+.+.|.++++++.....+.+.    ..-.   
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l----~q~~---  433 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL----CQLL---  433 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH----HHHH---
Confidence            333444489999999999999998877655555778899999999999999999999999644322211    1111   


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhh
Q 022992          199 AGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +.......|...+|..+......
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHh
Confidence            12223445677777777666543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.70  E-value=6  Score=34.05  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             ccCCHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc---cCcc-----chHH
Q 022992           84 KKTSSNEAISCLEQAVNMFC--DIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQN---EEVT-----TSAN  152 (289)
Q Consensus        84 ~~~~~~~A~~~~~~A~~~~~--~~g~~~~~a~~l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~---~~~~-----~~~~  152 (289)
                      .+.+++.|..++.|+-.+..  ........++.+.++|.-....+ +++.|+.++++|.++...   ....     ....
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            34478888888888877764  11233457888999999998888 999999999999999744   1111     3345


Q ss_pred             HHHHHHHHHHHHhcCHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIE  173 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~  173 (289)
                      .++..++.++...+.++...+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHH
Confidence            678888899988877654433

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.58  E-value=1.9  Score=31.44  Aligned_cols=93  Identities=16%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESK----HEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~----~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      +...|+.-+|++..+..+....+..+.    ..++..+..+|......     -+-.++++|.++..+.+..      |.
T Consensus         6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~------A~   79 (111)
T PF04781_consen    6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS------AH   79 (111)
T ss_pred             HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH------HH
Confidence            345677777777777766655443321    12333333333333322     1245777777777666543      77


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADM  141 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~  141 (289)
                      .+..+|.-+...--|++++.-.++++.+
T Consensus        80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   80 SLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            7877777766545566666666666544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.37  E-value=0.29  Score=44.85  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-cc-ch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HH--hhcc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VT-TS--ANQCKQKVAQYAAELEQYHKSIEIYEEIAR-QS--LNNN  186 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~--~~~~  186 (289)
                      .+.--+..+...|++.+|++.+... .+.+..| .. ..  ....++++|.|+..+|.|.-++.+|.+++. .+  +..+
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            3333444444558888888877544 2333333 11 11  223348999999999999999999999973 11  1111


Q ss_pred             c--------cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          187 L--------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       187 ~--------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .        +.-.....+++.|+.++..|.+..|-.||.++..++.+-+
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence            0        0111235677889999999999999999999988776654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=2.4  Score=37.26  Aligned_cols=144  Identities=18%  Similarity=0.147  Sum_probs=90.4

Q ss_pred             CCC-CCHHHHHHHHHHHHH--------------HHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHccC
Q 022992           24 LFG-SKYEDAADLFDKAAN--------------SFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD--AAHCYKKT   86 (289)
Q Consensus        24 ~~~-~~~~~A~~~~~~A~~--------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~--~a~~~~~~   86 (289)
                      .|+ |+..+|+...++...              ++...|+.+.-.+.+++.+.-... +-|  . -.|.+  .+-...+.
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-dlp--~-~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-DLP--C-YSYVHGMYAFGLEEC  188 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC-CCc--H-HHHHHHHHHhhHHHh
Confidence            576 888888877777642              233345555555555444332110 111  0 01111  11112233


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (289)
Q Consensus        87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  165 (289)
                       -+++|.+...+|+++.+-      -+.+-...+.+++..|++.++.++..+.-...+. + -..++..+...+.++.+.
T Consensus       189 g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~-s-~mlasHNyWH~Al~~iE~  260 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ-S-WMLASHNYWHTALFHIEG  260 (491)
T ss_pred             ccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh-h-hHHHhhhhHHHHHhhhcc
Confidence             678888888888888542      2235566788888889999999999887766552 2 223445577888899999


Q ss_pred             cCHHHHHHHHHHHH
Q 022992          166 EQYHKSIEIYEEIA  179 (289)
Q Consensus       166 g~~~~A~~~~~~a~  179 (289)
                      +.|+.|+++|.+-+
T Consensus       261 aeye~aleIyD~ei  274 (491)
T KOG2610|consen  261 AEYEKALEIYDREI  274 (491)
T ss_pred             cchhHHHHHHHHHH
Confidence            99999999998776

>smart00028 TPR Tetratricopeptide repeats

Probab=91.95  E-value=0.37  Score=25.07  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      .++..+|.++..+|++++|+..|++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3678899999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.84  E-value=1.6  Score=41.53  Aligned_cols=98  Identities=9%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           76 YVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        76 ~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      |+.++..++..+|..++++|...+..+........-++...+++.||..+.+.|.|.++|++|-+..++.-      -+.
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~------l~q  431 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP------LCQ  431 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH------HHH
Confidence            34445555555899999999999998886655556699999999999999999999999999977654421      223


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ..+-.+...-|.-++|+.+.....
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHH
Confidence            334445556677788887766554

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=91.63  E-value=8.8  Score=33.66  Aligned_cols=139  Identities=12%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH
Q 022992           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI  128 (289)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~  128 (289)
                      ++-++-+.+.++-..+..-..+...++.+.+..|-+. |-+.|.+.+++..+--...|..-..--+...+|..|..   .
T Consensus        81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D---~  157 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD---H  157 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc---H
Confidence            4444555555555554333456677888999999776 99999999998887777778777777788888888864   4


Q ss_pred             HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       129 ~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +-.-+..++|=.++++.|+=...+..-.--|.......+|.+|..+|-+.+..........|.
T Consensus       158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~  220 (393)
T KOG0687|consen  158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYE  220 (393)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHH
Confidence            555567778888888888766666655666767777789999999998887444333344443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.53  E-value=0.33  Score=44.47  Aligned_cols=85  Identities=8%  Similarity=0.037  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHhc--cC---------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAAD-MFQN--EE---------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~-~~~~--~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..++++|-++...|.|.-++.+|.+|+. ...+  .|         ......+++.+.|..+...|+.-.|.++|.++..
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3467999999999999999999999996 2221  12         1123447889999999999999999999999986


Q ss_pred             HHhhccccccchhhHHHHHHHHHH
Q 022992          181 QSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      ....+|       ..|++++.|+.
T Consensus       364 vfh~nP-------rlWLRlAEcCi  380 (696)
T KOG2471|consen  364 VFHRNP-------RLWLRLAECCI  380 (696)
T ss_pred             HHhcCc-------HHHHHHHHHHH
Confidence            654443       34666665554

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.30  E-value=11  Score=34.26  Aligned_cols=154  Identities=10%  Similarity=-0.009  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Q 022992           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFC  103 (289)
Q Consensus        25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~  103 (289)
                      |++++...++-.-+=+.++.....+..|.....+..--..+..+...-...+..++.++.++ ..-.+..+.-++.....
T Consensus       265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s  344 (482)
T KOG4322|consen  265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS  344 (482)
T ss_pred             hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence            45777777776666777777888888888887776644444445556667777788888777 55666677667776666


Q ss_pred             hcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH-------HHHHHHHHHHHhcCHHHHHHHHH
Q 022992          104 DIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-------CKQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       104 ~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                      .-......+.+-..++..+.-+|-++.|......|+...-..|-....+.       |+..-+..+ ...+.+.+..+.+
T Consensus       345 ey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~  423 (482)
T KOG4322|consen  345 EYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLD  423 (482)
T ss_pred             HhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHH
Confidence            66667777778888888888889999999999999987665553222221       221111111 3445666666666


Q ss_pred             HHH
Q 022992          177 EIA  179 (289)
Q Consensus       177 ~a~  179 (289)
                      ++.
T Consensus       424 ~A~  426 (482)
T KOG4322|consen  424 LAQ  426 (482)
T ss_pred             HHH
Confidence            653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.26  E-value=8.9  Score=32.99  Aligned_cols=108  Identities=9%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhh----ccc-cccch-h-
Q 022992          124 SEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLN----NNL-LKYGV-K-  193 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~----~~~-~~~~~-~-  193 (289)
                      .+|+.+.|..+|.|+-.+....  ......++.+.++|.-....+ ++++|+..++++......    ... ..+.. . 
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            3499999999999998876421  122455678889998888999 999999999999744211    111 01100 0 


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE  231 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e  231 (289)
                      ..+..++.+++..++.+...++.+....+...+++..+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~  122 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE  122 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH
Confidence            12233456777777666554444433223334443333

It is also involved in sporulation [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.03  E-value=3.6  Score=28.04  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ++-...-|.-+....+..+|+..+.++++....   +.....++-.+..+|.+.|+|.+++++--+-+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555668899999999999987654   33455677778889999999999999865544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.79  E-value=0.82  Score=30.23  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      |..+.+.|.-..+.|++++|+.+|.+|++.+..
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            444556666667778888888888888887653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.68  E-value=0.62  Score=26.94  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +++..||++-...++|++|+.-|++++..
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57899999999999999999999999743

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.64  E-value=11  Score=33.07  Aligned_cols=72  Identities=13%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHH-HHHhc---------------------------CCHHHHHHHHHHHHHHHHhc------CCHHHHH
Q 022992           87 SSNEAISCLEQAVN-MFCDI---------------------------GRLSMAARYYKEIAELYESE------HNIEQTI  132 (289)
Q Consensus        87 ~~~~A~~~~~~A~~-~~~~~---------------------------g~~~~~a~~l~~la~~~~~~------g~~~~A~  132 (289)
                      +..+|+..++..+. .....                           .+....++++..+|......      +..++++
T Consensus       199 ~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~  278 (352)
T PF02259_consen  199 EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEIL  278 (352)
T ss_pred             CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence            56788888887777 22211                           12356788999999998888      8899999


Q ss_pred             HHHHHHHHHHhccCccchHHHHHHHHHHHHHH
Q 022992          133 VFFEKAADMFQNEEVTTSANQCKQKVAQYAAE  164 (289)
Q Consensus       133 ~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (289)
                      ..|.+|+.+.+...      .++...|.++..
T Consensus       279 ~~~~~a~~~~~~~~------k~~~~~a~~~~~  304 (352)
T PF02259_consen  279 KYYKEATKLDPSWE------KAWHSWALFNDK  304 (352)
T ss_pred             HHHHHHHHhChhHH------HHHHHHHHHHHH
Confidence            99999999876543      355556655543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.43  E-value=11  Score=34.48  Aligned_cols=107  Identities=11%  Similarity=-0.007  Sum_probs=81.6

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhcc-
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI-------EQTIVFFEKAADMFQNE-  145 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~-------~~A~~~y~~A~~~~~~~-  145 (289)
                      .+..+|.++... |++.|...|+.+..=|.....+.-.|.++.-+|.++...+..       +....+++.|+..|... 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            345677777666 999999999999988877777777788888888877665532       46777888888888772 


Q ss_pred             ----CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          146 ----EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       146 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                          ..+..+..+....+.++...|.|.+|...+-+....
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence                223456678888888998999999999888777644

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.41  E-value=0.29  Score=45.81  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=73.5

Q ss_pred             HHHHHHcc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           78 DAAHCYKK-T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        78 ~~a~~~~~-~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      +.+-+|.+ . ++..|+.|+.+|+..-+...+     -.++++|.++...|-...|..++.+++.+...      ..-.+
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~  679 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTF  679 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHH
Confidence            33445543 3 899999999999877655443     35788888888888889999999999998632      22467


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ..+|..+..+.+.+.|++.|.++...
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            88999999999999999999999744

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.02  E-value=3.8  Score=27.82  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      |..+..-|.-....|++++|+.+|.+|++.+..
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            344555566667779999999999999998764

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.82  E-value=0.46  Score=24.74  Aligned_cols=22  Identities=5%  Similarity=0.015  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                      ...+|.++...|++++|...++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3445555555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.67  E-value=9.4  Score=36.44  Aligned_cols=116  Identities=14%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      ...|..+++.+...-        -......+|.++..     ..|.++|+.+|+.|+.-+...-.. .-..+...+|.+|
T Consensus       228 ~~~a~~~~~~~a~~g--------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y  298 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG--------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLY  298 (552)
T ss_pred             hhHHHHHHHHHHhhc--------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHH
Confidence            456777777765542        23355666777665     258999999999998832221100 0112467788888


Q ss_pred             HHh----c-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC---CHHHHHHHHHHHhh
Q 022992          163 AEL----E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG---DVVAITNALERYQD  221 (289)
Q Consensus       163 ~~~----g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---d~~~A~~~~~~~~~  221 (289)
                      ..-    . ++..|+.+|.++...         +.....+.+|.++....   |...|...|..+..
T Consensus       299 ~~g~~~~~~d~~~A~~~~~~aA~~---------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  299 LQGLGVEKIDYEKALKLYTKAAEL---------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             hcCCCCccccHHHHHHHHHHHHhc---------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            764    2 789999999999622         22334466777765433   56677777777643

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.66  E-value=1.3  Score=29.93  Aligned_cols=35  Identities=31%  Similarity=0.321  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..|..+...|.-+...|++.+|+.+|++|++++.+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34555666667777778888888888888887654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.61  E-value=0.48  Score=24.67  Aligned_cols=25  Identities=8%  Similarity=0.117  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEK  137 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~  137 (289)
                      .+...+|.++...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            5678999999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.50  E-value=5.4  Score=35.88  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHH------------------HHHH---cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992           27 SKYEDAADLFDKAAN------------------SFKL---AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~------------------~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      .||+.-+.+.+..-.                  ++-.   .|+.++|.+.+..++.--..     .....+--+|.+|..
T Consensus       155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-----~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-----PDPDTLGLLGRIYKD  229 (374)
T ss_pred             hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-----CChHHHHHHHHHHHH
Confidence            678887777776632                  2223   78888888888876433221     223455666777654


Q ss_pred             C----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHhccCccchH
Q 022992           86 T----------SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA----DMFQNEEVTTSA  151 (289)
Q Consensus        86 ~----------~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~----~~~~~~~~~~~~  151 (289)
                      .          .+++|+.+|.++-++-+..       ..-.|++.++...|...+...-.++..    .+.-+.|.....
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            3          3577888888876665321       123345555555454333332222222    222222322222


Q ss_pred             HHHH--HHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          152 NQCK--QKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       152 ~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      .+.+  -.++.+.+..|++++|+..++++..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            2221  2344566788999999999999873

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=89.47  E-value=15  Score=32.93  Aligned_cols=118  Identities=13%  Similarity=0.055  Sum_probs=55.9

Q ss_pred             HccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      +.++++.+|.....++.+.      .+.-.-++...+..-...||++.|=.+..+|.+......     -.+....+.+.
T Consensus        95 l~eG~~~qAEkl~~rnae~------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-----l~v~ltrarll  163 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEH------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-----LAVELTRARLL  163 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhc------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-----HHHHHHHHHHH
Confidence            3444555555555543221      223344555555555555666666666666655422111     12334455555


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      ...|+++.|.....+....  . +    .....+.-+..+|+..|++......+..
T Consensus       164 l~~~d~~aA~~~v~~ll~~--~-p----r~~~vlrLa~r~y~~~g~~~~ll~~l~~  212 (400)
T COG3071         164 LNRRDYPAARENVDQLLEM--T-P----RHPEVLRLALRAYIRLGAWQALLAILPK  212 (400)
T ss_pred             HhCCCchhHHHHHHHHHHh--C-c----CChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6666666666655555321  1 1    1112222234556666665554444444

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.97  E-value=1.3  Score=30.35  Aligned_cols=37  Identities=14%  Similarity=-0.015  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      ...|....+.|..+.+.|+.++|+.+|+++++...+.
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            3456667777888888899999999999999987754

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.89  E-value=0.82  Score=39.02  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~  139 (289)
                      |..||.+|..+.+..|+      .++.+|.++...|+.=.|+-+|-|++
T Consensus         1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHH
Confidence            67788888888888887      78888888887788888888888886

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK10941 hypothetical protein; Provisional

Probab=88.64  E-value=3.2  Score=35.64  Aligned_cols=78  Identities=9%  Similarity=0.060  Sum_probs=65.4

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       103 ~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ....+..-..+.+.++=.+|.+.++++.|+.+.+..+.+.+...      .-+..-|.+|.++|.+..|..-++..+..+
T Consensus       172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            34455667889999999999999999999999999999987643      235778999999999999999999988777


Q ss_pred             hhcc
Q 022992          183 LNNN  186 (289)
Q Consensus       183 ~~~~  186 (289)
                      .+++
T Consensus       246 P~dp  249 (269)
T PRK10941        246 PEDP  249 (269)
T ss_pred             CCch
Confidence            6554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=88.53  E-value=2.6  Score=26.38  Aligned_cols=42  Identities=14%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA  240 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~  240 (289)
                      ++.+++.+...|++..|++..+..+++.|..   .++..|..++.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N---~Qa~~L~~~i~   45 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN---RQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Confidence            4556677888999999999999999988774   45555555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.97  E-value=27  Score=33.78  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=35.8

Q ss_pred             HHHHhcCCHHHHHH------HHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          120 ELYESEHNIEQTIV------FFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       120 ~~~~~~g~~~~A~~------~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .++...|+..+|+.      +.+-+++|.++...  ..-+.+..++..+..+..+.-|.++|.+..
T Consensus       711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a~ylk~l~~~gLAaeIF~k~g  774 (1081)
T KOG1538|consen  711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCATYLKKLDSPGLAAEIFLKMG  774 (1081)
T ss_pred             HHhhcccchhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence            33344466666654      34455555554432  223466777777788888888888888774

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.51  E-value=6.7  Score=26.36  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      |..+..-|.-....|++++|+.+|.+|++.+..
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            334445556666779999999999999998754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=87.20  E-value=0.88  Score=39.41  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992           70 HEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .++..++..++..++.+..++|...|+.|+.+.+.+-+      ++..+|...+...+.-+|-.+|-+|+.+.+..
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n  183 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------ILIEMGQFREMHNEIVEADQCYVKALTISPGN  183 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence            44556677777777777888999999999888776655      88889998888888888889999998876643

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.15  E-value=0.36  Score=42.21  Aligned_cols=87  Identities=18%  Similarity=0.074  Sum_probs=54.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE  123 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~  123 (289)
                      ..|.++.|++.|..++++-.      ..+..|..-+.++.++ .+..|+.=|..|+++-.+.-      .-+---|....
T Consensus       126 n~G~~~~ai~~~t~ai~lnp------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa------~~ykfrg~A~r  193 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNP------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA------KGYKFRGYAER  193 (377)
T ss_pred             cCcchhhhhcccccccccCC------chhhhcccccceeeeccCCchhhhhhhhhhccCcccc------cccchhhHHHH
Confidence            45667777777777776633      2344555556666666 77777777777777755332      23333444445


Q ss_pred             hcCCHHHHHHHHHHHHHHHh
Q 022992          124 SEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+|+.++|...+..|+.+.-
T Consensus       194 llg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             HhhchHHHHHHHHHHHhccc
Confidence            55777777777777776643

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=86.36  E-value=7.9  Score=25.99  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|..+..-|.-....|++++|+.+|.+|++.+..
T Consensus         7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444555667777789999999999999998764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=86.23  E-value=23  Score=31.12  Aligned_cols=73  Identities=11%  Similarity=0.064  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..+...+.++..++.+....|.++.|...+.++..........  .+.+...-+.++...|+..+|+..+++.+.
T Consensus       140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3477888999999999999999999999999988765333221  234667778889999999999999988875

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.13  E-value=0.48  Score=41.50  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (289)
Q Consensus       126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  205 (289)
                      |.+++||++|.+|+++-+.      .+..+.+-+.+++++++...|++-|..++....+.      ++.+-+ .|..+..
T Consensus       128 G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds------a~~ykf-rg~A~rl  194 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS------AKGYKF-RGYAERL  194 (377)
T ss_pred             cchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccCccc------ccccch-hhHHHHH
Confidence            6677777777777765432      23455666777777777777777776665332111      111111 2445556


Q ss_pred             cCCHHHHHHHHHHHhhcC
Q 022992          206 KGDVVAITNALERYQDMD  223 (289)
Q Consensus       206 ~gd~~~A~~~~~~~~~~~  223 (289)
                      +|+++.|...|..+++++
T Consensus       195 lg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLD  212 (377)
T ss_pred             hhchHHHHHHHHHHHhcc
Confidence            677777777777766643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.04  E-value=29  Score=32.18  Aligned_cols=52  Identities=10%  Similarity=0.040  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                      ..+.+||+.....|+++-|.++|+++.               .+..+.+.|...||.+.-.+..+.+
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHHHHHHH
Confidence            488999999999999999999998773               1233555667777776655555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.04  E-value=2.2  Score=34.73  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           73 AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIV  133 (289)
Q Consensus        73 a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~  133 (289)
                      +.....+|..|.+.|+++++..+.++++++....++.  ...+..++.++..+++++.|--
T Consensus       141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhhhh
Confidence            5566778888888899999999999999997664433  6689999999999999998753

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.98  E-value=2.6  Score=26.34  Aligned_cols=33  Identities=6%  Similarity=-0.064  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .++.-+|..+..+|+|++|..+.+.++++-+.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            467778888888888888888888888876543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.80  E-value=8.4  Score=28.73  Aligned_cols=65  Identities=9%  Similarity=0.088  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      +..+|....+.+++=.++-+|++|+.+.++....         ....-...+++.++...|+.+=.++|++-+.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS   77 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS   77 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence            4567777777899999999999999987765311         1111235688999999999999999987764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.74  E-value=2.5  Score=35.99  Aligned_cols=43  Identities=12%  Similarity=0.121  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      |..+|.+|+.+.+..|      ..++++|.+....|+.-.|+=+|-+++
T Consensus         1 A~~~Y~~A~~l~P~~G------~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG------NPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHHHH-TTBS------HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC------CcccchhhhhccccchHHHHHHHHHHH
Confidence            6889999999999998      478999999999999999998888886

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=85.66  E-value=25  Score=31.11  Aligned_cols=158  Identities=11%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH-HH
Q 022992          123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA-GI  201 (289)
Q Consensus       123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~  201 (289)
                      ++.++.++|+++.++..+-......+.....+...++.++...|+..++.+...+.-...-.-......+...|+.. ..
T Consensus        86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq  165 (380)
T KOG2908|consen   86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ  165 (380)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence            34468999999999999988887776666777888999999999999999998887532111111122233334444 45


Q ss_pred             HHHccCCHHHHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHHcccC-HHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          202 CQLCKGDVVAITNALERYQDMD--PTFSGTREYRLLSDIAASMDEED-IAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       202 ~~l~~gd~~~A~~~~~~~~~~~--~~~~~~~e~~~l~~l~~a~~~~d-~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      .|...||+..+-...=.|+.+.  ..++.+........|+.+--.|+ .=.|.+.+.. +.+..+--.+..-+..+-.+.
T Consensus       166 Yyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~H-PilesL~gT~~eWL~dll~Af  244 (380)
T KOG2908|consen  166 YYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAH-PILESLKGTNREWLKDLLIAF  244 (380)
T ss_pred             HHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhh-HHHHHhcCCcHHHHHHHHHHh
Confidence            5667788877655554555432  22333443344444554433444 3333343333 333333323333344444444


Q ss_pred             ccc
Q 022992          279 KAK  281 (289)
Q Consensus       279 ~~~  281 (289)
                      +.|
T Consensus       245 n~G  247 (380)
T KOG2908|consen  245 NSG  247 (380)
T ss_pred             ccC
Confidence            443

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=85.65  E-value=10  Score=34.52  Aligned_cols=139  Identities=13%  Similarity=0.012  Sum_probs=86.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH----
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY----  114 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~----  114 (289)
                      +.++.+.+..-.+......+.....+...+...+..-..++..+.-. .++.|.+....|.......|-...-+++    
T Consensus       320 ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvf  399 (482)
T KOG4322|consen  320 AEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVF  399 (482)
T ss_pred             HHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEE
Confidence            33444444445555555555555555554455555445555555433 7889999999999888887766554443    


Q ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH---HHHHHHHHH
Q 022992          115 ---YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIA  179 (289)
Q Consensus       115 ---l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~  179 (289)
                         +...+.-+.. .+.+.++++.++|-+++.+.+-...+.++..-.+..|-..|+.++   +...|++..
T Consensus       400 anC~lA~a~s~~~-e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~  469 (482)
T KOG4322|consen  400 ANCTLAFALSCAN-ESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW  469 (482)
T ss_pred             Eeeeecchhhhhh-hhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence               3333333322 678888888888888888877666666666667777777776543   444555543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=85.40  E-value=9.1  Score=37.91  Aligned_cols=25  Identities=16%  Similarity=0.305  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      +.-+-.+|.++|++++|..+|+++.
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~  104 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERAN  104 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3444445555555555555555554

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.01  E-value=2.8  Score=28.32  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=19.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      +...|.-....|+|++|..+|..+++.+..
T Consensus         9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           9 LIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            333444444457788888888888777653

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PRK10941 hypothetical protein; Provisional

Probab=84.90  E-value=15  Score=31.50  Aligned_cols=87  Identities=9%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       147 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      +.......+.++=.++...++++.|+.+.+..+...++++   +    -..-.|++|...|-+..|..-++.|++..|. 
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---~----e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~-  247 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP---Y----EIRDRGLIYAQLDCEHVALSDLSYFVEQCPE-  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---H----HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-
Confidence            3344556778888899999999999999999985544332   1    2234688999999999999999999987765 


Q ss_pred             CCchHHHHHHHHHHHHc
Q 022992          227 SGTREYRLLSDIAASMD  243 (289)
Q Consensus       227 ~~~~e~~~l~~l~~a~~  243 (289)
                        .+....+...+..+.
T Consensus       248 --dp~a~~ik~ql~~l~  262 (269)
T PRK10941        248 --DPISEMIRAQIHSIE  262 (269)
T ss_pred             --chhHHHHHHHHHHHh
Confidence              444555666665553

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.70  E-value=1.9  Score=43.46  Aligned_cols=101  Identities=17%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL  121 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~  121 (289)
                      |...+.|+.|+..|.+..+-+..  . .+--.+..++|...... .-..--+-+.+|+.-|....+..++.--+..-|.+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPG--R-KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV  561 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCC--c-ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence            44444555555555555555431  0 11112444555544322 11111177888888888888878888888888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhccC
Q 022992          122 YESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus       122 ~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      |+.+|++++-+++|.-|+.-|+...
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~  586 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQHP  586 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999998887643

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.60  E-value=26  Score=30.42  Aligned_cols=131  Identities=9%  Similarity=0.023  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN  127 (289)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~  127 (289)
                      .++-++-+.+.++-.+..+-....+.++.++|..|-+. |.+.+.+++.+..+-....|-.-..--+...+|.+|..   
T Consensus        91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d---  167 (412)
T COG5187          91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD---  167 (412)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc---
Confidence            34555555555555555444566788999999999887 99999999998887776667655555566677777754   


Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      -.-.-+..+.+=.++++.|+-...+..-.--|.......+|.+|..++.+.+...
T Consensus       168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            3444456666667777777766666666666777777789999999998887433

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.59  E-value=8.4  Score=25.96  Aligned_cols=31  Identities=10%  Similarity=0.054  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .+..-|.-....|++++|+.+|.+|++.+..
T Consensus         8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           8 ALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3444445556669999999999999998764

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.26  E-value=3.6  Score=27.60  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..+..-|.-....|++++|+.+|..|++.+..
T Consensus         7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           7 KELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            33445556666668888888888888887653

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=84.14  E-value=5.8  Score=33.74  Aligned_cols=94  Identities=12%  Similarity=0.105  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           73 AQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        73 a~~~~~~a~~~~~~----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +.+++.+--++...    -+..|.++..+|+-.....|+....+-|-..-+..+....+|+.|.-||.+|..++....-+
T Consensus        36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~  115 (368)
T COG5091          36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP  115 (368)
T ss_pred             hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence            34445444444322    67899999999999999999999899899999999999999999999999999999887777


Q ss_pred             chHHHHHHHHHHHHHHhc
Q 022992          149 TSANQCKQKVAQYAAELE  166 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g  166 (289)
                      .+..+.-..|-...-+++
T Consensus       116 ~We~rLet~L~~~~kkQ~  133 (368)
T COG5091         116 LWEDRLETKLNKKNKKQK  133 (368)
T ss_pred             HHHHHHHHHHhHhhHhhc
Confidence            666555555555555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=84.03  E-value=39  Score=31.96  Aligned_cols=49  Identities=14%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      +++.-|.+.|+-.+..|...+      .......+.+..+++=..|..+|++++.
T Consensus       415 kD~~~AfrIFeLGLkkf~d~p------~yv~~YldfL~~lNdd~N~R~LFEr~l~  463 (656)
T KOG1914|consen  415 KDKETAFRIFELGLKKFGDSP------EYVLKYLDFLSHLNDDNNARALFERVLT  463 (656)
T ss_pred             CChhHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence            667777777776666655432      3345556666677777777777777763

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=83.84  E-value=28  Score=30.22  Aligned_cols=90  Identities=14%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992           90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus        90 ~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      +-++-+.++++-....+-....+.++.++|..|.+.++.+.+.++..+.++-.-..|......-+...+|-+|..+.=.+
T Consensus        93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~  172 (412)
T COG5187          93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVE  172 (412)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHH
Confidence            33444444444333333355678899999999999999999999999998877777766666677788998888777667


Q ss_pred             HHHHHHHHHH
Q 022992          170 KSIEIYEEIA  179 (289)
Q Consensus       170 ~A~~~~~~a~  179 (289)
                      +.++....++
T Consensus       173 e~lE~~~~~i  182 (412)
T COG5187         173 ESLEVADDII  182 (412)
T ss_pred             HHHHHHHHHH
Confidence            7666655554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=83.80  E-value=8  Score=35.16  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-----------CCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDI-----------GRLS-MAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus        75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~-----------g~~~-~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      ++..+..+|++..|..|+--|..|+++..+.           |+.. -+..+-.+|..||..+++++-|+.+-.+++.+-
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            5566777777778888888888888776542           2222 234456789999999999999999999988775


Q ss_pred             hccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          143 QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      +..      ...+..-+.++..+.+|.+|.+.+--+
T Consensus       259 P~~------frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  259 PSY------FRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cch------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432      123445566788888888888765544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.35  E-value=12  Score=25.55  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           78 DAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        78 ~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +.-.+|...+.++|+...+++++-..+..   +.=.++.-+..+|.+.|+|.+.+.+-.+=+++.++.+++
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            33445544477889999999988766533   444567777888899999999999998888887766554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.21  E-value=48  Score=32.45  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKL   59 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a   59 (289)
                      +.++..|..|.....|++|.++|.++
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445566666666777777777655

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.78  E-value=4  Score=41.27  Aligned_cols=91  Identities=13%  Similarity=-0.016  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           90 EAISCLEQAVNMFCDIGRL----SMAARYYKEIAELYESE----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        90 ~A~~~~~~A~~~~~~~g~~----~~~a~~l~~la~~~~~~----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                      -|...|.+|+..|++.+..    ...-.+...+|..+.+.    |+.    +.|.+|+.-|+.......++--+..-+-+
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (932)
T PRK13184        486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKALV  561 (932)
T ss_pred             HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence            4566677777777665432    12233455556555432    444    68889998888887777777667777789


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHhh
Q 022992          162 AAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       162 ~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      |..+|+|++=+++|.-++.+..+
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCC
Confidence            99999999999999888755433

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=82.70  E-value=13  Score=27.74  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL---------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~---------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      ..+|....+. ++-.++-+|++|+.+..+.+..         ..-.-...|+|..+...|+.+-.++|++-|.+..
T Consensus         5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            3445544444 7888888888888887766311         1123345689999999999999999999887653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=82.51  E-value=34  Score=35.29  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=18.5

Q ss_pred             HhhHHHHHHHHHHhhccCCCCC-----CCHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFG-----SKYEDAADLFDKAA   40 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~-----~~~~~A~~~~~~A~   40 (289)
                      ++|=..++.+=+++-..+..|+     ++|++|+.....++
T Consensus       867 PkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~  907 (1265)
T KOG1920|consen  867 PKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG  907 (1265)
T ss_pred             hHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC
Confidence            3444455555554333233454     66677666555554

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.48  E-value=5.1  Score=27.20  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK   65 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~   65 (289)
                      ..|+++..+| .-....|++++|+.+|.++++.+..
T Consensus         4 ~~a~~l~~~A-ve~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRA-VELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4566655555 4445678888888888888887753

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=82.42  E-value=13  Score=28.34  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       111 ~a~~l~~la~~~~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ...+..+++.++...   .+..+.|.+++..+.    ...+...-+|+.-|+.-+.++|+|+.|+++....+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            445667777777654   456777888877665    33444556789999999999999999999998887544

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.21  E-value=35  Score=30.11  Aligned_cols=110  Identities=13%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      +....-+..|...||-+.|.+.+.+..+-...+|..-...-+..++|..|..  .+-.-+..++|-.++.+.||++.-.+
T Consensus       105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D--~~lV~~~iekak~liE~GgDWeRrNR  182 (393)
T KOG0687|consen  105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD--HDLVTESIEKAKSLIEEGGDWERRNR  182 (393)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHhCCChhhhhh
Confidence            3334456778889999999999999988888888877777788888888874  44455667788889999999999888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .-.--|.......++.+|..+|..++.-|...
T Consensus       183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~  214 (393)
T KOG0687|consen  183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTSY  214 (393)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence            88877887777788888888888887766543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.57  E-value=9.4  Score=30.75  Aligned_cols=89  Identities=15%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             CCHHHHH-HHHHHHHHHHhccCccchHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992          126 HNIEQTI-VFFEKAADMFQNEEVTTSANQCKQKVAQYAA-----ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA  199 (289)
Q Consensus       126 g~~~~A~-~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  199 (289)
                      |+|=++| .-|+.|+.+|..+-+..+-+....++|..++     ..++...|++.|..+-..         +.......+
T Consensus        41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~---------n~~~aC~~~  111 (248)
T KOG4014|consen   41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA---------NIPQACRYL  111 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc---------CCHHHHhhh
Confidence            5555555 4678888887766555444556677776665     235888999999887521         122334567


Q ss_pred             HHHHHc-------cCCHHHHHHHHHHHhhcC
Q 022992          200 GICQLC-------KGDVVAITNALERYQDMD  223 (289)
Q Consensus       200 ~~~~l~-------~gd~~~A~~~~~~~~~~~  223 (289)
                      |++++.       ..|.+.|++.+.+++++.
T Consensus       112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~  142 (248)
T KOG4014|consen  112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE  142 (248)
T ss_pred             hhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence            777653       235888999998887653

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.42  E-value=6.4  Score=26.57  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=24.8

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK   65 (289)
Q Consensus        28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~   65 (289)
                      ...+|+.+..+| .-....|++++|..+|..+++.+..
T Consensus         2 ~l~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           2 SLEKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             cHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345666666666 3345667788888888888777653

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.16  E-value=2.1  Score=35.61  Aligned_cols=50  Identities=12%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      +.++.+.|.+.|.+|+++.++.      ...+..+|....+.|+++.|.+.|++++
T Consensus         7 ~~~D~~aaaely~qal~lap~w------~~gwfR~g~~~ekag~~daAa~a~~~~L   56 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEW------AAGWFRLGEYTEKAGEFDAAAAAYEEVL   56 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchh------hhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence            3467777777777777765542      2356667777777777777777777765

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=81.02  E-value=7.5  Score=25.50  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~   64 (289)
                      +.|..+..+|... ...|++++|+++|.++++.+.
T Consensus         3 ~~A~~~~~~Av~~-D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    3 DKAIELIKKAVEA-DEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHH-HHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence            4455555554444 457788888888888877765

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF12854 PPR_1: PPR repeat

Probab=80.79  E-value=3.5  Score=22.88  Aligned_cols=25  Identities=8%  Similarity=0.189  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                      .+++.+...+.+.|+.++|.+++++
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3678888899999999999998875

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=37  Score=29.46  Aligned_cols=224  Identities=11%  Similarity=0.090  Sum_probs=124.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEA-AQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~a-a~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      ...++.-+.....++++..+-+...-. .-....+...|....+.+|+....-.+.-+++..+.......+.-=..+|-.
T Consensus        98 ~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~  177 (421)
T COG5159          98 SDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE  177 (421)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH
Confidence            355677777888888777654433221 1122222333444488999998888888888877765555555544555555


Q ss_pred             cCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH-----
Q 022992          125 EHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN-----  198 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-----  198 (289)
                      ..+..++-..+.-|-...... -.+...++.-..=|.+++.-.+|..|..+|-++..-...  . ..... +...     
T Consensus       178 irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l-~~d~k-Ac~sLkYml  253 (421)
T COG5159         178 IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--L-KMDVK-ACVSLKYML  253 (421)
T ss_pred             HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--c-cchHH-HHHHHHHHH
Confidence            556666655555554433222 123334444455566778888999999999888632110  0 00111 1111     


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  277 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~  277 (289)
                      +..+.+  ...++-...++ .--....+ ..+....+..+.+++.+.++..|..+++.|..--.-||..+.-+.-+-+.
T Consensus       254 LSkIMl--N~~~evk~vl~-~K~t~~~y-~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~  328 (421)
T COG5159         254 LSKIML--NRREEVKAVLR-NKNTLKHY-DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDV  328 (421)
T ss_pred             HHHHHH--hhHHHHHHHHc-cchhHhhh-hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHH
Confidence            111111  11111111111 00011111 23445667778889999999999999999987766777776555544333

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=80.41  E-value=41  Score=35.49  Aligned_cols=52  Identities=12%  Similarity=0.013  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                      ..++...-+|+.|... .+.+|+..|..|+++.+..+|+.-.|.++..++.+.
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~  292 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCL  292 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHH
Confidence            4567777788888776 999999999999999999999988888888776554

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
1qqe_A	292	Crystal Structure Of The Vesicular Transport Protei		1e-28
2ifu_A	307	Crystal Structure Of A Gamma-Snap From Danio Rerio		9e-06

>pdb|1QQE|A Chain A, Crystal Structure Of The Vesicular Transport Protein Sec17 Length = 292

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 133/244 (54%), Gaps = 2/244 (0%)
Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT- 86
           K+E+AADL  +AA  ++L K  + AG +++K A+   K  ++ EA   YV+A  C+K   
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 87  SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNE 145
           +S  A+  LE A+ +F   G+    A +  E+ E+ E++ H+  + I  +E A + +  +
Sbjct: 92  NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 146 EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC 205
           +    +N+C  K A   A   QY ++ +IY ++ + S+ N L ++ +K + L  G+CQL 
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211
Query: 206 KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP 265
             D VA    L+  Q  DP F+ +RE   L  +  +++E D  + ++  KEFD+   LD 
Sbjct: 212 ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
Query: 266 WKTT 269
           WK T
Sbjct: 272 WKIT 275

>pdb|2IFU|A Chain A, Crystal Structure Of A Gamma-Snap From Danio Rerio Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 30/241 (12%)
Query: 29  YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK-TS 87
           Y+ AA  + KAA +FK AK  ++A   Y++ A  H    S   AA+A+  A    K    
Sbjct: 32  YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGXXLKDLQR 91
Query: 88  SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV 147
             EA+  +E+A   + + G    AA       +L E   ++ + +  +++AA +F+NEE 
Sbjct: 92  XPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEP-LDLSKAVHLYQQAAAVFENEER 150
Query: 148 TTSANQC----------KQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLLKYGVKG 194
              A +           +QK  + AA L++    +K  E Y    ++ +   L+      
Sbjct: 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSXYKEXENYPTCYKKCIAQVLV------ 204
Query: 195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVV 254
                   QL + D VA    +     + P FSG+ +   L D+  + DE+D  +   V 
Sbjct: 205 --------QLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQAYDEQDEEQLLRVC 255
Query: 255 K 255
           +
Sbjct: 256 R 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	5e-86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-04

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score =  258 bits (660), Expect = 5e-86
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 13/294 (4%)

Query: 5   IARAEEFEKKAEKKLNGWGLFGS--------KYEDAADLFDKAANSFKLAKSWDKAGATY 56
           I+   E  K+AEKK      F          K+E+AADL  +AA  ++L K  + AG ++
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 57  VKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYY 115
           +K A+   K  ++ EA   YV+A  C+K   +   A+  LE A+ +F   G+    A + 
Sbjct: 61  LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120

Query: 116 KEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            E+ E+ E++ H+  + I  +E A + +  ++    +N+C  K A   A   QY ++ +I
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234
           Y ++ + S+ N L ++ +K + L  G+CQL   D VA    L+  Q  DP F+ +RE   
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

Query: 235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDL 288
           L  +  +++E D  + ++  KEFD+   LD WK T+L ++KE ++    +EDDL
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDL 291

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score =  217 bits (553), Expect = 1e-69
 Identities = 65/275 (23%), Positives = 120/275 (43%), Gaps = 6/275 (2%)

Query: 3   DQIARAEEFEKKAEKKLN-GWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLAN 61
            +I+ A E   KAEK L   +  +   Y+ AA  + KAA +FK AK  ++A   Y++ A 
Sbjct: 5   QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64

Query: 62  CHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAE 120
            H    S   AA+A+  A    K      EA+  +E+A  M+ + G    AA       +
Sbjct: 65  AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124

Query: 121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR 180
           L E   ++ + +  +++AA +F+NEE    A +   K ++     +++ ++    ++  +
Sbjct: 125 LMEPL-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK-EK 182

Query: 181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA 240
                           +   + QL + D VA    +     + P FSG+ +   L D+  
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQ 241

Query: 241 SMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK 275
           + DE+D  +   V +    +T +D     L + +K
Sbjct: 242 AYDEQDEEQLLRVCRS-PLVTYMDNDYAKLAISLK 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 48/358 (13%), Positives = 104/358 (29%), Gaps = 128/358 (35%)

Query: 10  EFEKKAEKKLNGWGLFGSKYEDA----ADLFD-KAANSFK-----LAKSWDKAGATYVKL 59
              +   ++L    L    YE+      ++ + KA N+F      L  +  K    ++  
Sbjct: 228 HSIQAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 60  AN-CHLKLE------SKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRL--SM 110
           A   H+ L+      +  E     +    C  +    E ++   + +++   I       
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDG 340

Query: 111 AAR--YYK---------------------EIAELYES-----EH-NI-EQTIVFF----- 135
            A    +K                     E  ++++         +I    +        
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 136 ----EKAADMF--------QNEEVTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIARQS 182
                   +          Q +E T S      ++          H+S ++ Y  I +  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF 459

Query: 183 LNNNLLKYGVKG--------HLLNA--------------------------GICQLCKGD 208
            +++L+   +          HL N                                  G 
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 209 VVAITNALERY----QDMDPTFSGTREYRLLSDIAASMD-----EEDI--AKFTDVVK 255
           ++     L+ Y     D DP +      RL++ I   +D     EE++  +K+TD+++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYE-----RLVNAI---LDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 45/314 (14%), Positives = 87/314 (27%), Gaps = 117/314 (37%)

Query: 81  HCYKKTSSNEAISCLEQAV--NMFC-DIGRLSMAARYYKEIAELYESEHNIEQTIVFF-- 135
           + YK       +S  E A   N  C D+  +  +    +EI  +  S+  +  T+  F  
Sbjct: 16  YQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 136 -----EKAADMFQNEEVTTS--------ANQCKQK---VAQYAAELEQYHKSIEIYEE-- 177
                E+    F  E +  +          + +Q       Y  + ++ +   +++ +  
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 178 IARQ----SLNNNLLK---------YGVKG------------------------HLLNAG 200
           ++R      L   LL+          GV G                          LN  
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 201 ICQLCKGDVVAITNALERYQDMDPTFSG------------------------TREYR--- 233
            C      V+ +   L     +DP ++                         ++ Y    
Sbjct: 191 NCN-SPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 234 -LLSDIAASMDEEDIAKF---------------TDVVK-EFDSMTPLDPWKTTLLLRVKE 276
            +L ++    + +    F               TD +     +   LD    TL     +
Sbjct: 248 LVLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 277 KLKAK--ELEEDDL 288
            L  K  +    DL
Sbjct: 305 SLLLKYLDCRPQDL 318

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 14/170 (8%)

Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS 87
           ++++AA   ++     +        G     L N +     KH   +         K+ +
Sbjct: 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKE-A 198

Query: 88  SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ---- 143
              A+   ++ + +  D+G      R    +   Y    + +  I   ++   + +    
Sbjct: 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258

Query: 144 NEEVTTSANQ---CKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
                 + +        + Q+    E Y +++ +  E+       QS  +
Sbjct: 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 12/200 (6%), Positives = 47/200 (23%), Gaps = 41/200 (20%)

Query: 27  SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCH-----------LKLESKHEAAQA 75
           + ++  +     +     +       G       +C               E     +  
Sbjct: 29  NSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAI 88

Query: 76  YVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVF 134
           Y    + Y      N+A+   +  + +   +      A+    +    +     ++  + 
Sbjct: 89  YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148

Query: 135 FEKAADMFQ------------------------NEEVTTSANQCKQKVAQYAAELEQYHK 170
            E+   + +                        +                    +E Y +
Sbjct: 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208

Query: 171 SIEIYEEIARQ-----SLNN 185
           ++++  ++  +     +  N
Sbjct: 209 NLKLMRDLGDRGAQGRACGN 228

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 90  EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT 149
              +  +            S          E   +  +    + FF+ A      +  T 
Sbjct: 26  GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85

Query: 150 SA--NQ---CKQKVAQYAAELEQYHKSIEIYEEIARQ-----SLNN 185
           SA  +Q       +  Y   ++ +   + + + +  +     S  N
Sbjct: 86  SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 9/137 (6%)

Query: 51  KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLS 109
           +A    +        L     A+ A     + Y      +EA +  +         G  +
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ-----NEEVTTSANQ---CKQKVAQY 161
              R   ++  +     N +     F +  ++           + +A +           
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 162 AAELEQYHKSIEIYEEI 178
           A   ++Y KS+   ++ 
Sbjct: 124 AGARQEYEKSLVYAQQA 140

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 12/138 (8%), Positives = 39/138 (28%), Gaps = 22/138 (15%)

Query: 28  KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS 87
           ++++A   F       + +           ++        +   A + +++         
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 88  SN----------------------EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE 125
            +                       A    E+++            A  ++ + +L + E
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160

Query: 126 HNIEQTIVFFEKAADMFQ 143
            N+ +    + +A D+F 
Sbjct: 161 KNLLEAQQHWLRARDIFA 178

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 16/177 (9%), Positives = 53/177 (29%), Gaps = 25/177 (14%)

Query: 28  KYEDAADLFDKA-------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA 80
            +++A     +         +    A++    G  Y              +  +   D  
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDTGEFPEDVR 156

Query: 81  HCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD 140
           +  +      A+   E+ +++   +G  +   R +  +   +    N    ++  E+   
Sbjct: 157 NALQA-----AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211

Query: 141 MFQ----NEEVTTSANQ---CKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
           + +          + +        + ++    E Y K++ +  ++       QS  +
Sbjct: 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 18/200 (9%)

Query: 3   DQIARAEEFEKKAEKKLNG----------WGLFGSKYEDAADLFDKAANSFKLAKSWDKA 52
             +  AE  + + E+ +            + L   +++   D  +            +  
Sbjct: 26  FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85

Query: 53  GATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAA 112
                 +     KL    +    +    + + +    EAI    +A      +      A
Sbjct: 86  E----TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141

Query: 113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKS 171
            ++ ++AE Y        ++    +A D++QN  + +    Q    +A    + + Y K+
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 172 IEIYE---EIARQSLNNNLL 188
           +   E   E+A    N+  +
Sbjct: 202 LPHLEAALELAMDIQNDRFI 221

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 28/180 (15%)

Query: 27  SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT 86
            +Y +A   + +A           +    + K+A  +  ++  H +    + A   Y+  
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174

Query: 87  SSN----------------------EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES 124
                                    +A+  LE A+ +  DI      A     IA  Y+ 
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234

Query: 125 EHNIEQTIVFFEKAADMFQNEEVTTSAN------QCKQKVAQYAAELEQYHKSIEIYEEI 178
             + +  +  F+KAA + + +                 K  Q     +   + ++     
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/169 (10%), Positives = 52/169 (30%), Gaps = 18/169 (10%)

Query: 29  YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSS 88
            +   D+  +  +    A++    G  Y              +  +   +     +    
Sbjct: 110 CQRHLDISRELNDKVGEARALYNLGNVYHAKGK-SFGCPGPQDVGEFPEEVRDALQA--- 165

Query: 89  NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ----- 143
             A+   E+ +++   +G  +   R +  +   +    N    ++  E+   + +     
Sbjct: 166 --AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 223

Query: 144 NEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEIAR-----QSLNN 185
             E    +N       + ++    E Y K++ +  ++       QS  +
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 65  KLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE 123
           +L+ +   AQ+     + Y       +AI    + + +  ++       R    +   Y 
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318

Query: 124 SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ-YAAELEQYHKSIEIYEEIA--R 180
           +  N +Q + F EK  ++ +     +     +  ++         Y  +  I  E     
Sbjct: 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

Query: 181 QSLNNNLLKYGVKGHLLNAGICQL 204
            SLN    K G +  + N  + +L
Sbjct: 379 SSLNGVRPKLGRRHSMENMELMKL 402

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 14/130 (10%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 69  KHEAAQAYVDAAHCYKKTSSN-EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN 127
           +    +A+ +  + +    +  +A+   EQ + +  + G  +     Y  +   Y     
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 128 IEQTIVFFEKAADMFQ-----NEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEI-- 178
            E    +++K   + +       E  +  +       +  Y   ++ + K + I +E+  
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 179 ---ARQSLNN 185
                ++  +
Sbjct: 125 RIGEGRACWS 134

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 14/129 (10%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 58  KLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKE 117
           ++     +L    E    +    +   +     AI   ++A +    +      A ++ +
Sbjct: 89  EIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFK 148

Query: 118 IAELYESEHNIEQTIVFFEKAADMFQ-----NEEVTTSAN---QCKQKVAQYAAELEQYH 169
           ++E Y        ++ +  +A ++++     N  +    +        + QY   +  + 
Sbjct: 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ 208

Query: 170 KSIEIYEEI 178
           K+  + E  
Sbjct: 209 KAYSMAEAE 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	100.0
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	100.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.86
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.84
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.84
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.78
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.78
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.77
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.76
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.72
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.72
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.71
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.71
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.71
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.66
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.65
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.61
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.61
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.61
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.6
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.59
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.55
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.52
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.45
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.42
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.38
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.37
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.32
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.31
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.31
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.29
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.24
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.21
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.2
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.2
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.17
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.12
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.07
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.03
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.02
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.02
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.01
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.01
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.01
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.98
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.97
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.96
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.94
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.94
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.94
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.93
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.88
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.88
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.85
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.85
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.85
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.84
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.82
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.75
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.71
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.66
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	98.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.59
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.58
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	98.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.17
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.99
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.93
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.91
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.9
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.9
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.68
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.46
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.43
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.37
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.25
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	97.2
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.97
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.84
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.8
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.78
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.61
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.59
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.12
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.05
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.74
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.45
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.4
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.89
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.54
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.32
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.09
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	91.26
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	91.11
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.05
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.81
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.77
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.08
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	88.38
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	88.31
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.25
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.94
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.74
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	87.48
2wm9_A	428	Dedicator of cytokinesis protein 9; polymorphism,	86.94
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	86.57
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.55
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.8
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.8
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.2

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=100.00  E-value=3.8e-41  Score=291.30  Aligned_cols=282  Identities=33%  Similarity=0.565  Sum_probs=246.8

Q ss_pred             HhhHHHHHHHHHHhhccC-C---CC--C-CC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW-G---LF--G-SK-YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAY   76 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~-~---~~--~-~~-~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~   76 (289)
                      +++|.+++++|+|++++. +   +|  + |+ +++|+++|.+++.+|...|++++|+.+|.++++++++.|++...+.++
T Consensus         1 ~~~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~   80 (292)
T 1qqe_A            1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY   80 (292)
T ss_dssp             CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            468999999999999941 1   33  3 54 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      .++|.+|... ++++|+.+|++|+.+++..|++...+.++.++|.+|... |++++|+.+|++|+++++..+.......+
T Consensus        81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~  160 (292)
T 1qqe_A           81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence            9999999887 999999999999999999999999999999999999996 99999999999999999988877777889


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL  234 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~  234 (289)
                      +.++|.++..+|+|++|+.+|++++......+...+.....++++|.|+..+|++..|..+|+++++++|.+..+.+..+
T Consensus       161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  240 (292)
T 1qqe_A          161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF  240 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            99999999999999999999999986554443323445557889999999999999999999999999999998888889


Q ss_pred             HHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccccCCCC
Q 022992          235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELEEDDLT  289 (289)
Q Consensus       235 l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (289)
                      +..++.++..+|.+.+++++..|+.+..+|||+..++.++++.+..   +|+|||
T Consensus       241 l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~---~~~~~~  292 (292)
T 1qqe_A          241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ---QEDDLL  292 (292)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH---HHCC--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhhc---cccccC
Confidence            9999999988899999999999999999999999999999999954   466776

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=100.00  E-value=3.6e-36  Score=261.89  Aligned_cols=270  Identities=24%  Similarity=0.298  Sum_probs=245.7

Q ss_pred             Ccch-HhhHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992            1 MGDQ-IARAEEFEKKAEKKLNG-WGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVD   78 (289)
Q Consensus         1 ~~~~-~~~a~~~~~~A~~~~k~-~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~   78 (289)
                      |+.+ ..+|.+++++|++++++ ++.|+|+|++|+.+|.+++.+|+..|++++|+.+|.++++++.+.+++..++.++.+
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~   81 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ   81 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6775 88999999999999994 444579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992           79 AAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus        79 ~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      +|.+|... ++++|+.+|++|++++...|++...+.++.++|.+|.. |++++|+.+|++|+++++..++......++.+
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            99999887 99999999999999999999999999999999999999 99999999999999999998888888899999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 022992          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSD  237 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~  237 (289)
                      +|.++..+|+|++|+.+|++++......+. .+.....++++|.+++.+|++..|...|++++ ++|.+..+.++.++..
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~  238 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALED  238 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHH
Confidence            999999999999999999999865544332 22344567888999999999999999999999 9999999999999999


Q ss_pred             HHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992          238 IAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV  274 (289)
Q Consensus       238 l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~  274 (289)
                      ++.++..+|.+.+.. +..|+.+..+|||.+.+..++
T Consensus       239 l~~~~~~~d~~~~~~-~~~~~~~~~ld~~~~~~~~~l  274 (307)
T 2ifu_A          239 LLQAYDEQDEEQLLR-VCRSPLVTYMDNDYAKLAISL  274 (307)
T ss_dssp             HHHHHHTTCHHHHHH-HTTSHHHHTSCHHHHHHHHTC
T ss_pred             HHHHHHhcCHHHHHH-HHhCchhhhhhHHHHHHHHhC
Confidence            999999999999999 666999999999988776554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.88  E-value=1.8e-20  Score=161.48  Aligned_cols=214  Identities=11%  Similarity=0.047  Sum_probs=164.4

Q ss_pred             chHhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH--------------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 022992            3 DQIARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDK--------------------AANSFKLAKSWDKAGATYVKLANC   62 (289)
Q Consensus         3 ~~~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~--------------------A~~~~~~~g~~~~A~~~~~~a~~~   62 (289)
                      |+..+|..++.+|...+..    .|+|++|+++|.+                    +|.+|...|++++|+.+|.+|+++
T Consensus        31 ~~~~~A~~~~~~a~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  106 (292)
T 1qqe_A           31 YKFEEAADLCVQAATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4477888888888777651    1455555555544                    466778899999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           63 HLKLESKHEAAQAYVDAAHCYKK--TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        63 ~~~~~~~~~aa~~~~~~a~~~~~--~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      +...|++..++.++.++|.+|..  .++++|+.+|++|+++++..++....+.++.++|.++..+|++++|+.+|+++++
T Consensus       107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999976  4999999999999999999999989999999999999999999999999999999


Q ss_pred             HHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH--ccCCHHHHHHHHH
Q 022992          141 MFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL--CKGDVVAITNALE  217 (289)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--~~gd~~~A~~~~~  217 (289)
                      +.+..+.. .....++.++|.++..+|++++|+.+|++++...+...  .......+..++..+.  ..+++..|...|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA--DSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence            98776554 35667899999999999999999999999973221111  1111122333444432  2345666666655


Q ss_pred             HHhhc
Q 022992          218 RYQDM  222 (289)
Q Consensus       218 ~~~~~  222 (289)
                      ++..+
T Consensus       265 ~~~~l  269 (292)
T 1qqe_A          265 NFMRL  269 (292)
T ss_dssp             TSSCC
T ss_pred             cCCcc
Confidence            44433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.87  E-value=6.6e-20  Score=163.29  Aligned_cols=238  Identities=10%  Similarity=0.026  Sum_probs=196.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK  116 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-~~~~a~~l~  116 (289)
                      .|..+...|++++|+.+|.+|+.+....+++...+.++..+|.+|... ++++|+.++++|+++++..++ ....+.++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            567788899999999999999999999999999999999999999877 999999999999999999988 888999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      ++|.++...|++++|+.+|++|+++.+..++....+.++.++|.++..+|++++|+.+|++++........ .......+
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  267 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY  267 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence            99999999999999999999999999999888888899999999999999999999999999854332211 12234567


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992          197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~  275 (289)
                      .++|.++...|+++.|...+++++.+.+..+...-...+..++..+. .|+.+.+.+++..+.... ..|........+.
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la  346 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVA  346 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHH
Confidence            88999999999999999999999887655442222222455666664 777788888888887774 3444445555554


Q ss_pred             Hhc
Q 022992          276 EKL  278 (289)
Q Consensus       276 ~~~  278 (289)
                      +.+
T Consensus       347 ~~y  349 (383)
T 3ulq_A          347 KYY  349 (383)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=2.7e-19  Score=159.28  Aligned_cols=237  Identities=12%  Similarity=0.042  Sum_probs=193.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYK  116 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-~~~~a~~l~  116 (289)
                      -|..+...|++++|+.+|.+|+.+....+++...+.++.++|.+|... ++++|+.++++|+++++..++ ....+.++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            366778899999999999999999999999999999999999999877 999999999999999999887 668999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      ++|.++...|++++|+++|++|+++.+..++....+.++.++|.++..+|++++|+.+|++++........ .. ....+
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~-~~~~~  264 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DL-LPKVL  264 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GG-HHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hh-HHHHH
Confidence            99999999999999999999999999988888888899999999999999999999999999854322111 11 24567


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992          197 LNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~  275 (289)
                      .++|.++...|+++.|...+++++++.+..+...-...+..+...+. .++...+.+++..+..... .|........+.
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la  343 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHH
Confidence            88999999999999999999999998777653322223444444453 6677788888888777543 344444444444


Q ss_pred             Hhc
Q 022992          276 EKL  278 (289)
Q Consensus       276 ~~~  278 (289)
                      +..
T Consensus       344 ~~y  346 (378)
T 3q15_A          344 AVF  346 (378)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.86  E-value=6.1e-19  Score=156.61  Aligned_cols=183  Identities=11%  Similarity=0.122  Sum_probs=86.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |.+|...|++++|..+|.+++.+....+++...+.++..+|.+|... ++++|+.++++++.+.+..++....+.++..+
T Consensus        54 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  133 (406)
T 3sf4_A           54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL  133 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            34444455555555555555555555554444455555555555443 55555555555555555555544455555555


Q ss_pred             HHHHHhcCC--------------------HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          119 AELYESEHN--------------------IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       119 a~~~~~~g~--------------------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      |.++...|+                    +++|+.+|++++.+.+..+.......++..+|.++...|++++|+.+|+++
T Consensus       134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (406)
T 3sf4_A          134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR  213 (406)
T ss_dssp             HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred             HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555555555                    555555555555554444444444444555555555555555555555554


Q ss_pred             HHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          179 ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      +......+. .......+..+|.++...|+++.|...+++++.+.
T Consensus       214 l~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          214 LLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            422211110 01112233344444444455555544444444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.85  E-value=8.5e-19  Score=156.70  Aligned_cols=249  Identities=11%  Similarity=0.136  Sum_probs=184.8

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA------------------ANSFKLAKSWDKAGATYVKLANCHLKLE   67 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~   67 (289)
                      ..+..++..|...+..     |++++|..+|.++                  |.+|...|++++|..+|.+++++.+..+
T Consensus        46 ~~~~~l~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           46 SMCLELALEGERLCNA-----GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            3455555555555442     4666666666665                  5567788999999999999999988888


Q ss_pred             CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC-----------------HH
Q 022992           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN-----------------IE  129 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~-----------------~~  129 (289)
                      +....+.++..+|.+|... ++++|+.+|++++.++...++....+.++.++|.++...|+                 ++
T Consensus       121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~  200 (411)
T 4a1s_A          121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT  200 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence            8888888899999988776 89999999999999988888888888899999999988888                 89


Q ss_pred             HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCH
Q 022992          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDV  209 (289)
Q Consensus       130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~  209 (289)
                      +|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .......+..+|.++...|++
T Consensus       201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~  279 (411)
T 4a1s_A          201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLGNSHIFLGQF  279 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHCcCH
Confidence            9999999998888877777777778889999999999999999999888754332211 112233566778888888898


Q ss_pred             HHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHH-cccCH----HHHHHHHHhcccc
Q 022992          210 VAITNALERYQDMDPTFSGT-REYRLLSDIAASM-DEEDI----AKFTDVVKEFDSM  260 (289)
Q Consensus       210 ~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~-~~~d~----~~~~~al~~~~~~  260 (289)
                      .+|...+++++.+.+..... .....+..++..+ ..|+.    ..+++++..++..
T Consensus       280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            88888888887766655422 2345566666655 36664    3444444444433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=3.3e-18  Score=152.29  Aligned_cols=245  Identities=19%  Similarity=0.097  Sum_probs=184.8

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK   84 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~   84 (289)
                      .+|..++.+|.+.++..    ++...-+..+...|.+|...|++++|+.++.+|++++++.++ ....+.++.++|.+|.
T Consensus       120 ~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          120 LSAIKFFKKAESKLIFV----KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             HHHHHHHHHHHTTGGGC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            44555555554444311    344444555556678899999999999999999999999987 7888999999999998


Q ss_pred             cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (289)
Q Consensus        85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~  163 (289)
                      .. ++++|+.+|++|+++.+..++....+.++.++|.++...|++++|+.+|++|+++++..+..+....++.++|.++.
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            87 99999999999999999999999999999999999999999999999999999999988875566889999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTREYRLLSDIAA  240 (289)
Q Consensus       164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~  240 (289)
                      .+|++++|+.+|++++......+...+  ...+..++.++...|+   ...|...+++.    ..  ..........++.
T Consensus       276 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~--~~~~~~~~~~la~  347 (383)
T 3ulq_A          276 KLGKIDKAHEYHSKGMAYSQKAGDVIY--LSEFEFLKSLYLSGPDEEAIQGFFDFLESK----ML--YADLEDFAIDVAK  347 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TC--HHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cC--HHHHHHHHHHHHH
Confidence            999999999999999754322211111  1124557888999999   44454444432    11  1223445667777


Q ss_pred             HHc-ccCH----HHHHHHHHhccccCC
Q 022992          241 SMD-EEDI----AKFTDVVKEFDSMTP  262 (289)
Q Consensus       241 a~~-~~d~----~~~~~al~~~~~~~~  262 (289)
                      .+. .|+.    ..++.++...+.+..
T Consensus       348 ~y~~~g~~~~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            764 7775    344555555444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.4e-18  Score=154.29  Aligned_cols=274  Identities=11%  Similarity=0.062  Sum_probs=217.7

Q ss_pred             HhhHHHHHHHHHHhhcc-------------CCCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992            5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD   50 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~-------------~~~~-~~~~~~A~~~~~~A--------------------~~~~~~~g~~~   50 (289)
                      ..+|..++.+|-+.-..             ..++ .|++++|..+|.++                    |.+|...|+++
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  104 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  104 (406)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence            56778888777665331             1122 38888888888776                    45677899999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--------------------HHHHHHHHHHHHHHHHhcCCHH
Q 022992           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--------------------~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      +|..++.+++++....+++...+.++..+|.+|... +                    +++|+.++++++.+....++..
T Consensus       105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~  184 (406)
T 3sf4_A          105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA  184 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            999999999999999999999999999999999777 8                    9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ..+.++.++|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~  263 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-R  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-c
Confidence            999999999999999999999999999999999998888888889999999999999999999999999854433221 2


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHHc-ccCH----HHHHHHHHhccccCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMTPL  263 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~~~  263 (289)
                      ......+..+|.++...|++..|...+++++.+.+..... .....+..++..+. .|+.    ..++++++.++.++ .
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~  342 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-D  342 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-C
Confidence            2234567788999999999999999999998876665532 23556667777663 6774    45666666655554 2


Q ss_pred             chhHHHHHHHHHHhccc
Q 022992          264 DPWKTTLLLRVKEKLKA  280 (289)
Q Consensus       264 d~~~~~~~~~~~~~~~~  280 (289)
                      .+.....+..+...+..
T Consensus       343 ~~~~~~~~~~l~~~~~~  359 (406)
T 3sf4_A          343 KSGELTARLNLSDLQMV  359 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHH
Confidence            34555555555555433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.85  E-value=1.9e-18  Score=148.77  Aligned_cols=228  Identities=10%  Similarity=0.098  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      ...+...+.+|...|++++|..++.+++++....+++...+.++..+|.+|... ++++|+.++++++.+.+..++....
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  122 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  122 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence            444555577788899999999999999999999999888899999999999777 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992          112 ARYYKEIAELYESEHN--------------------IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus       112 a~~l~~la~~~~~~g~--------------------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.++..+|.++...|+                    +++|+.+|++++.+.+..+.......++..+|.++...|++++|
T Consensus       123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  202 (338)
T 3ro2_A          123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  202 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999                    99999999999999888777777778899999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHH-cccCH--
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASM-DEEDI--  247 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~-~~~d~--  247 (289)
                      +.+|++++......+. .......+..+|.++...|+++.|...+++++.+.+..... .....+..++..+ ..|+.  
T Consensus       203 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (338)
T 3ro2_A          203 VIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK  281 (338)
T ss_dssp             HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999754332211 12233456778888889999999999999988776655432 2345566666665 36665  


Q ss_pred             --HHHHHHHHhccccC
Q 022992          248 --AKFTDVVKEFDSMT  261 (289)
Q Consensus       248 --~~~~~al~~~~~~~  261 (289)
                        ..+++++..++...
T Consensus       282 A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          282 AIDYHLKHLAIAQELK  297 (338)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcC
Confidence              34455555544443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.84  E-value=1.4e-18  Score=150.58  Aligned_cols=206  Identities=15%  Similarity=0.045  Sum_probs=162.8

Q ss_pred             HhhHHHHHHHHHHhhccCCC--------------C--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992            5 IARAEEFEKKAEKKLNGWGL--------------F--GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES   68 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~--------------~--~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   68 (289)
                      ..+|..++.+|...++..+.              +  .++...++..|..+|.+|...|++++|+.+|.+|+++++..|+
T Consensus        32 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~  111 (307)
T 2ifu_A           32 YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT  111 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            56677777777665541100              0  1344555555666677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           69 KHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      +...+.++.++|.+|...++++|+.+|++|+++++..+++...+.++.++|.++..+|++++|+.+|++++.+++..+..
T Consensus       112 ~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  191 (307)
T 2ifu_A          112 PDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY  191 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            99999999999999976899999999999999999999999999999999999999999999999999999999988776


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHH
Q 022992          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN  214 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~  214 (289)
                      .....++..+|.++..+|++++|+.+|++++ ......  .......+..++..+ ..||.+.+..
T Consensus       192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~--~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS--GSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST--TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC--CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            6667789999999999999999999999997 432211  111112223333333 5677765554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.84  E-value=2.9e-18  Score=147.56  Aligned_cols=243  Identities=11%  Similarity=0.087  Sum_probs=198.8

Q ss_pred             HhhHHHHHHHHHHhhcc-------------CCCC-CCCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992            5 IARAEEFEKKAEKKLNG-------------WGLF-GSKYEDAADLFDKA--------------------ANSFKLAKSWD   50 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~-------------~~~~-~~~~~~A~~~~~~A--------------------~~~~~~~g~~~   50 (289)
                      ..+|..++.+|-+.-.+             ..++ .|++++|.++|.++                    +.+|...|+++
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  100 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  100 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence            56777777777655321             1122 38888888887775                    45677899999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C--------------------HHHHHHHHHHHHHHHHhcCCHH
Q 022992           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S--------------------SNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~--------------------~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      +|..++.+++++....+++...+.++..+|.+|... +                    +++|+.++++++.+....++..
T Consensus       101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~  180 (338)
T 3ro2_A          101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA  180 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            999999999999999999999999999999999776 7                    9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ..+.++..+|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++......+. .
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~  259 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-R  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-h
Confidence            999999999999999999999999999999999988888778889999999999999999999999999755433221 2


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc-hHHHHHHHHHHHHc-ccCHH
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT-REYRLLSDIAASMD-EEDIA  248 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~-~e~~~l~~l~~a~~-~~d~~  248 (289)
                      ......+..++.++...|+++.|...+++++.+.+..... ........++..+. .|+.+
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  320 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  320 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            2234556778999999999999999999998876655432 23455666777663 66654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.83  E-value=2.9e-18  Score=153.24  Aligned_cols=256  Identities=10%  Similarity=0.089  Sum_probs=206.6

Q ss_pred             HhhHHHHHHHHHHhhcc-------------CCCCC-CCHHHHHHHHHHH--------------------HHHHHHcCCHH
Q 022992            5 IARAEEFEKKAEKKLNG-------------WGLFG-SKYEDAADLFDKA--------------------ANSFKLAKSWD   50 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~-------------~~~~~-~~~~~A~~~~~~A--------------------~~~~~~~g~~~   50 (289)
                      ..+|..++.+|-+.-.+             ..++. |++++|..+|.++                    |.+|...|+++
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  143 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD  143 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence            56777777777665322             11223 7888888887776                    45577899999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C-----------------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-----------------SNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~-----------------~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      +|..+|.+++++....++....+.++..+|.+|... +                 +++|+.++++++++....++....+
T Consensus       144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~  223 (411)
T 4a1s_A          144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG  223 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999777 8                 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      .++..+|.++...|++++|+.+|++++++.+..+.......++..+|.++...|++++|+.+|++++........ ....
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~  302 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE-REVE  302 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHH
Confidence            999999999999999999999999999999988877777889999999999999999999999999855433211 1223


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHHc-ccCH----HHHHHHHHhccccC
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG-TREYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMT  261 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~-~~e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~  261 (289)
                      ...+..+|.++...|++.+|...+++++.+.+.... ......+..++..+. .|+.    ..+++++..++.++
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence            456778899999999999999999999887665542 233556667777664 7775    44555555544443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.83  E-value=5.5e-18  Score=150.74  Aligned_cols=240  Identities=17%  Similarity=0.101  Sum_probs=180.5

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYK   84 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~   84 (289)
                      .+|..++.+|.+.++..    ++....+..+...|.+|...|++++|+.++.+|++++.+.++ ....+.++.++|.+|.
T Consensus       118 ~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          118 VEAIGYYREAEKELPFV----SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             HHHHHHHHHHHTTGGGC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            34444444444444310    233444445555577899999999999999999999998886 6688999999999998


Q ss_pred             cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (289)
Q Consensus        85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~  163 (289)
                      .. ++++|+++|++|+++.+..++....+.++.++|.++...|++++|+.+|++|+++++..+++.. ..++..+|.++.
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~  272 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLC  272 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHH
Confidence            87 9999999999999999999999999999999999999999999999999999999988777766 789999999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTREYRLLSDIAA  240 (289)
Q Consensus       164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~  240 (289)
                      .+|++++|+.++++++......+...+  ...+..++.++...|+   ...|...+++.    ...  .....+...++.
T Consensus       273 ~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~--~~~~~~~~~la~  344 (378)
T 3q15_A          273 KAGQTQKAFQFIEEGLDHITARSHKFY--KELFLFLQAVYKETVDERKIHDLLSYFEKK----NLH--AYIEACARSAAA  344 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCTTCCSCH--HHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCH--HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CCh--hHHHHHHHHHHH
Confidence            999999999999999865432211111  1223445667777888   55555555541    111  222345567888


Q ss_pred             HHc-ccCH----HHHHHHHHhcc
Q 022992          241 SMD-EEDI----AKFTDVVKEFD  258 (289)
Q Consensus       241 a~~-~~d~----~~~~~al~~~~  258 (289)
                      .+. .|+.    ..++.++...+
T Consensus       345 ~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHH
Confidence            774 7785    34555555433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.80  E-value=2.8e-17  Score=138.37  Aligned_cols=175  Identities=16%  Similarity=0.197  Sum_probs=150.2

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC   82 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~a~~   82 (289)
                      +.+|..++.+|-+.++.  ..+++...-+..+...|.+|...|++++|..+|.+++++..+.  ++....+.++..+|.+
T Consensus        17 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEK--TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SSSHHHHHHHHHHHHHH--HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            67999999999888873  1234444556778889999999999999999999999999877  6667788899999999


Q ss_pred             HccC-CHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHH
Q 022992           83 YKKT-SSNEAISCLEQAVNMFCDIGR--LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK  157 (289)
Q Consensus        83 ~~~~-~~~~A~~~~~~A~~~~~~~g~--~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~  157 (289)
                      |... ++++|+.+|++++.++...+.  ....+.++.++|.++...|++++|+.+|+++++++...  +.......++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9877 999999999999999987633  46788999999999999999999999999999997654  224456678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          158 VAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +|.++...|++++|+.+|++++..
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=1.5e-16  Score=136.03  Aligned_cols=218  Identities=16%  Similarity=0.171  Sum_probs=169.5

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL--ESKHEAAQAYVDAAHC   82 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~aa~~~~~~a~~   82 (289)
                      ..+|..++.+|-+....  ..+++...-...+...+.+|...|++++|..+|.++++++.+.  ++....+.++..+|.+
T Consensus        43 ~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  120 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEK--TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL  120 (311)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            44566666666555441  0112334445566667788889999999999999999999877  6667778899999999


Q ss_pred             HccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHH
Q 022992           83 YKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQK  157 (289)
Q Consensus        83 ~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~  157 (289)
                      |... ++++|+.++++++.++...  ++....+.++..+|.++...|++++|+.+|+++++++...  +.......++..
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  200 (311)
T 3nf1_A          121 YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN  200 (311)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9877 9999999999999999876  6777889999999999999999999999999999998765  334556678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhccc------------------------------------------cccchhhH
Q 022992          158 VAQYAAELEQYHKSIEIYEEIARQSLNNNL------------------------------------------LKYGVKGH  195 (289)
Q Consensus       158 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~  195 (289)
                      +|.++...|++++|+.+|++++........                                          ........
T Consensus       201 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  280 (311)
T 3nf1_A          201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTT  280 (311)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHH
Confidence            999999999999999999999754221100                                          01122344


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      +..+|.++...|++++|...|++++++.+
T Consensus       281 ~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          281 LKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            66677888888888888888888876544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=3.8e-16  Score=140.54  Aligned_cols=243  Identities=10%  Similarity=0.054  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      +...|.+|...|++++|.++|.++.......++..........++.++... ++++|+.++++++.+....++....+++
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            345578899999999999999999999999988777888888889888776 9999999999999999999998889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      +.++|.++...|++++|+.++++++......++......++..+|.++..+|+|++|..+|+++.......+........
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            99999999999999999999999999998888888888999999999999999999999999997544332211112234


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC-----------------------------------------CchHHH
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQDMDPTFS-----------------------------------------GTREYR  233 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~-----------------------------------------~~~e~~  233 (289)
                      .+...|.++...|++..|...|..+.+..+...                                         ...+..
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGID  297 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhh
Confidence            456678888888999988777766543222111                                         122333


Q ss_pred             HHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          234 LLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       234 ~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      ....++.++..++...+..++..+......|+.....+..+.+.+
T Consensus       298 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  342 (434)
T 4b4t_Q          298 AMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTL  342 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            444455555555666677777776666666665555444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=2.5e-16  Score=134.65  Aligned_cols=197  Identities=11%  Similarity=0.070  Sum_probs=167.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Q 022992           26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF  102 (289)
Q Consensus        26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~  102 (289)
                      +++...-+..+...+.++...|++++|..+|.+++++....+  +....+.++..+|.+|... ++++|+.++++++.++
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            356667788889999999999999999999999999998776  5667788999999999777 9999999999999999


Q ss_pred             Hhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          103 CDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       103 ~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      ...  ++....+.++..+|.++...|++++|+.+|++++++....  +.......++..+|.++...|++++|+.+|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            887  7778889999999999999999999999999999998665  445566788999999999999999999999999


Q ss_pred             HHHHhhcc-ccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          179 ARQSLNNN-LLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      +....... .........+..++.++...|++++|...+++++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            75432210 001123345677899999999999999999998864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.76  E-value=4.2e-16  Score=119.91  Aligned_cols=155  Identities=11%  Similarity=0.082  Sum_probs=145.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      +|....+..+...|.+|...|++++|..++.+++++.+..+++...+.++..+|.++... ++++|+.++++++.+.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            466677788899999999999999999999999999999999999999999999999877 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      +++...+.++.++|.++...|++++|+.++++++++.+..+.+.....++..+|.++...|++++|++++++++..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888888889999999999999999999999999744

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3.9e-16  Score=129.83  Aligned_cols=227  Identities=14%  Similarity=0.134  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-CHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RLS  109 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-~~~  109 (289)
                      .++.+...|.++...|++++|+.+|.++++..   .+    ..++..+|.++... ++++|+.++++++++.+..+ +..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   76 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK   76 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence            35567777888888888888888888888775   22    45777888888766 88888888888888888764 556


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--------------------ccchHHHHHHHHHHHHHHhcCHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE--------------------VTTSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      ..+.++..+|.++...|++++|+.+|++++.+.+...                    ..+....++..+|.++...|+++
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence            6678888888888888888888888888888533210                    12334578899999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHH
Q 022992          170 KSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIA  248 (289)
Q Consensus       170 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~  248 (289)
                      +|+.+|++++.....       ....+..+|.++...|+++.|...|++++++.|...     .....++..+. .|+.+
T Consensus       157 ~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-----RAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhcCcc-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH-----HHHHHHHHHHHHHhhHH
Confidence            999999999854322       234577889999999999999999999998876642     33555666553 56643


Q ss_pred             ----HHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          249 ----KFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       249 ----~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                          .++.+++..+... ..|.+..++..+.+.+
T Consensus       225 ~A~~~~~~a~~~~~~~~-~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          225 SALETLDAARTKDAEVN-NGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhChhhc-CCCchHHHHHHHHHhh
Confidence                3333333332222 2277777777776653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=3e-16  Score=130.51  Aligned_cols=204  Identities=10%  Similarity=0.135  Sum_probs=165.6

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcC-CHHH
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLE-SKHE   71 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~   71 (289)
                      .+|..+...|...++.     ++|++|..+|.++             |.+|...|++++|+.++.+++++....+ +...
T Consensus         3 ~~a~~~~~~g~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   77 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKA-----RQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV   77 (258)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH
Confidence            3566666666666552     6888888888876             5678899999999999999999988764 5566


Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh------cC--------------CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD------IG--------------RLSMAARYYKEIAELYESEHNIEQ  130 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~------~g--------------~~~~~a~~l~~la~~~~~~g~~~~  130 (289)
                      .+.++..+|.++... ++++|+.++++++.+.+.      .|              .....+.++..+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            688999999999877 999999999999984221      11              233456788999999999999999


Q ss_pred             HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH
Q 022992          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV  210 (289)
Q Consensus       131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~  210 (289)
                      |+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....       ....+..+|.++...|++.
T Consensus       158 A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          158 AVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------FVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHhhHH
Confidence            999999999986643      368899999999999999999999999854321       2345678899999999999


Q ss_pred             HHHHHHHHHhhcCCCCC
Q 022992          211 AITNALERYQDMDPTFS  227 (289)
Q Consensus       211 ~A~~~~~~~~~~~~~~~  227 (289)
                      .|...|++++++.+.+.
T Consensus       225 ~A~~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          225 SALETLDAARTKDAEVN  241 (258)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhc
Confidence            99999999998875443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.75  E-value=5.9e-16  Score=124.57  Aligned_cols=151  Identities=11%  Similarity=0.068  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-CH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-RL  108 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-~~  108 (289)
                      .....+...|.++...|++++|..+|.+++++++..+++...+.++.++|.+|... ++++|+.++++++.++...+ ++
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            34567778899999999999999999999999999999999999999999999877 99999999999999999999 66


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ...+.++.++|.++...|++++|+.++++++.+.+..+.+...+.++..+|.++...|++++|+.++++++..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999988888888889999999999999999999999999744

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.74  E-value=1.5e-16  Score=136.74  Aligned_cols=194  Identities=12%  Similarity=-0.027  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..+...+..+...|++++|.+.+.++++..............+..+|.++... ++++|+.++++|+.+.....+....+
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34445567778899999999999999987654434445566677788888776 99999999999999988877888889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS-ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      .++.++|.+|...|++++|+.+|++|+++++..+.... ...++.++|.++..+|+|++|+.+|++++......+ ..+.
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~~~  234 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cHHH
Confidence            99999999999999999999999999999876654333 337899999999999999999999999985543221 1233


Q ss_pred             hhhHHHHHHHHHHccCCHHHH-HHHHHHHhhcCCCCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAI-TNALERYQDMDPTFSG  228 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A-~~~~~~~~~~~~~~~~  228 (289)
                      ....+.++|.++...|++++| ...+++++.+...+..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~  272 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence            456788899999999999999 8889998876655553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.73  E-value=3.3e-16  Score=134.52  Aligned_cols=195  Identities=12%  Similarity=-0.004  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      -...+...+..+...|++++|...+.++.+......+....+..+..+|.++... ++++|+.++++|+.+....++...
T Consensus        74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  153 (293)
T 3u3w_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence            3444555566777889999999999999885432222233356677789998776 999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      .+.++.++|.+|...|++++|+.+|++|+++++.. +.......++.++|.++..+|+|++|+.++++++........ .
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~  232 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-M  232 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-H
Confidence            89999999999999999999999999999998876 556667789999999999999999999999999865433322 2


Q ss_pred             cchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~~~~  227 (289)
                      +.....+.++|.++...| ++++|...+++++.+....+
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            334567889999999999 57999999999987655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=3.4e-16  Score=124.58  Aligned_cols=169  Identities=14%  Similarity=0.123  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      -...|...|.+|...|++++|+.+|.+++++....      ..++..+|.+|... ++++|+.++.+++...+..     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence            35678899999999999999999999999885432      56888999999877 9999999999998876543     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                       ..++..+|.++...++++.|+..+.+++.+.+..      ..++..+|.++..+|++++|++.|++++...+.      
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------  139 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------  139 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------
Confidence             4578899999999999999999999999986653      257889999999999999999999999855322      


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                       ....+.++|.++..+|++++|...|+++++++|.
T Consensus       140 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          140 -FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             -hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence             2346788999999999999999999999988764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.72  E-value=1.1e-15  Score=123.04  Aligned_cols=176  Identities=13%  Similarity=0.069  Sum_probs=142.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE  123 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~  123 (289)
                      ..|++++|...+...      .+++...+.++..+|.++... ++++|+.++++++.++...++....+.++.++|.++.
T Consensus         4 ~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   77 (203)
T 3gw4_A            4 EAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER   77 (203)
T ss_dssp             ---CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            356666666633222      234445678899999999776 9999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 022992          124 SEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC  202 (289)
Q Consensus       124 ~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  202 (289)
                      ..|++++|+.+|++++++++..+ .+.....++..+|.++..+|++++|+.++++++......+. .......+..+|.+
T Consensus        78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~  156 (203)
T 3gw4_A           78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDL  156 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHH
Confidence            99999999999999999999887 44477889999999999999999999999999754322211 22233456778999


Q ss_pred             HHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          203 QLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       203 ~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      +...|++++|...+++++++.+..+
T Consensus       157 ~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          157 AQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999987655544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.72  E-value=1.4e-15  Score=117.01  Aligned_cols=159  Identities=12%  Similarity=0.091  Sum_probs=138.0

Q ss_pred             cCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992           66 LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        66 ~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|++...+.++..+|.++... ++++|+.++++++.+.+..+++...+.++..+|.++...|++++|+.+|++++++.+.
T Consensus         2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            467888899999999999777 9999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          145 EEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       145 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      .+++.....++..+|.++...|++++|+.++++++......+. .......+..++.++...|++..|...+++++++.+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999999999999999754322211 222344567789999999999999999999887654


Q ss_pred             C
Q 022992          225 T  225 (289)
Q Consensus       225 ~  225 (289)
                      .
T Consensus       161 ~  161 (164)
T 3ro3_A          161 E  161 (164)
T ss_dssp             T
T ss_pred             H
Confidence            4

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=2.8e-16  Score=129.24  Aligned_cols=193  Identities=12%  Similarity=-0.023  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...|.++...|++++|+..|.++++.....      ..++..+|.++... ++++|+.+|++++++.+..      +.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~   74 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LG   74 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Confidence            45677888999999999999999999774432      55788899999777 9999999999999987643      34


Q ss_pred             HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          114 YYKEIAELYESE-----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       114 ~l~~la~~~~~~-----------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ++.++|.++...           |++++|+..|++++++.+..      ..++..+|.++..+|++++|+..|++++...
T Consensus        75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            889999999999           99999999999999986643      3578999999999999999999999998553


Q ss_pred             hhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhcccc
Q 022992          183 LNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSM  260 (289)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~  260 (289)
                       .       ....+.++|.++...|++++|...|++++++.|...     .....++..+.  ....+.+|+..|+.+
T Consensus       149 -~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          149 -D-------TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL-----DLRVRYASALL--LKGKAEEAARAAALE  211 (217)
T ss_dssp             -C-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHT--C--------------
T ss_pred             -c-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHH--HccCHHHHHHHHHHH
Confidence             2       234567889999999999999999999999887753     33455565553  233445555555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.72  E-value=1.3e-16  Score=140.43  Aligned_cols=212  Identities=10%  Similarity=0.028  Sum_probs=153.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |++++|..+|.++              |.+|...|++++|+.+|.+++++....      ..++..+|.+|... ++++|
T Consensus        79 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A  152 (365)
T 4eqf_A           79 GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYTNTSHQQDA  152 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHccccHHHH
Confidence            6888888888877              567888999999999999999874322      55788889999777 99999


Q ss_pred             HHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992           92 ISCLEQAVNMFCDIGRLS----MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~----~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (289)
                      +.+|++++.+.+......    +.+.++..+|.++...|++++|+.+|++++++.+....    ..++..+|.++...|+
T Consensus       153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~  228 (365)
T 4eqf_A          153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGE  228 (365)
T ss_dssp             HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCC
Confidence            999999999877654322    34566777899999999999999999999998654222    3578899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccC
Q 022992          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EED  246 (289)
Q Consensus       168 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d  246 (289)
                      +++|+.+|++++.....       ....+..+|.++...|++.+|...|++++++.|..     ......++..+. .|+
T Consensus       229 ~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          229 FNRAIDAFNAALTVRPE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF-----IRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHHCCC
Confidence            99999999999854322       23457788999999999999999999999987764     244556666663 566


Q ss_pred             H----HHHHHHHHhcccc
Q 022992          247 I----AKFTDVVKEFDSM  260 (289)
Q Consensus       247 ~----~~~~~al~~~~~~  260 (289)
                      .    ..++++++..+..
T Consensus       297 ~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          297 YREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCccc
Confidence            3    5666666665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.72  E-value=4.3e-14  Score=124.81  Aligned_cols=225  Identities=10%  Similarity=-0.012  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH--HHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL--SMA  111 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~--~~~  111 (289)
                      .+...+.++...|++++|...+.+++.+.+..+++...+.++..+|.++... ++++|+.++++++.+....+..  ...
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            3444467788899999999999999999999999999999999999999776 9999999999999999988876  667


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +.++.++|.++...|++++|..++++++++.+..+.+. ...++..+|.++...|++++|..+++++.......+.....
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~  213 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW  213 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence            88999999999999999999999999999988876655 44788999999999999999999999997543221110000


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCH----HHHHHHHHhccccC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDI----AKFTDVVKEFDSMT  261 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~----~~~~~al~~~~~~~  261 (289)
                      ........+.+++..|++..|...++++....+.-. .........++..+ ..|+.    ..+++++...+..+
T Consensus       214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~  287 (373)
T 1hz4_A          214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR  287 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence            000011223446789999999999998876554321 11112234455544 36665    34455555444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.71  E-value=1.9e-15  Score=130.19  Aligned_cols=248  Identities=12%  Similarity=0.026  Sum_probs=184.9

Q ss_pred             HhhHHHHHHHHHHhhcc-C--------CCCC-CCHHHHHHHHHHH--------------HHHHHHcC-CHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNG-W--------GLFG-SKYEDAADLFDKA--------------ANSFKLAK-SWDKAGATYVKL   59 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~-~--------~~~~-~~~~~A~~~~~~A--------------~~~~~~~g-~~~~A~~~~~~a   59 (289)
                      ..+|.+++.++-+.-.. .        .++. +++++|...+.++              |.++...| ++++|..+|.++
T Consensus        38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  117 (330)
T 3hym_B           38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA  117 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            55677777766544331 1        1123 7888888888776              45677788 888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (289)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A  138 (289)
                      ++.....      ..++..+|.++... ++++|+.++++++.+.+....      .+..+|.++...|++++|+.+|+++
T Consensus       118 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          118 TTLEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL------PMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             HTTCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8764332      34677888888766 999999999999998766443      6777999999999999999999999


Q ss_pred             HHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHccCCHHHHHHHH
Q 022992          139 ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL--KYGVKGHLLNAGICQLCKGDVVAITNAL  216 (289)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~l~~gd~~~A~~~~  216 (289)
                      +++.+..      ..++..+|.++...|++++|+.+|++++......+..  .......+..+|.++...|+++.|...+
T Consensus       186 l~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          186 LSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9886543      3678999999999999999999999998554221110  0112346778899999999999999999


Q ss_pred             HHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          217 ERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       217 ~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      ++++++.|...     .....++..+. .|+   +.+|+..|.....++|.+...+..+...+
T Consensus       260 ~~a~~~~~~~~-----~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          260 RQALVLIPQNA-----STYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHSTTCS-----HHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHhhCccch-----HHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            99998877643     34555666553 444   56677777777778888888888887766

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.71  E-value=4e-15  Score=125.01  Aligned_cols=233  Identities=11%  Similarity=0.029  Sum_probs=160.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLE--SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA  119 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~--~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la  119 (289)
                      ..|++++|..+|.+|++++.+..  +....+.++..+|.+|... ++++|+.++++++.+....  ++....+.++..+|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            35666777777777777776543  3356678899999999777 9999999999999999887  77778899999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCc--cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc-cccccchhhHH
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNEEV--TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN-NLLKYGVKGHL  196 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~  196 (289)
                      .++...|++++|+.+|++++++++..+.  ......++..+|.++..+|++++|+.+|++++...... +.........+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999999876522  24567889999999999999999999999998542111 01111234567


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhcCCC------CCCchHHHHHHHHHHHHc----ccCHHHHHHHHHhccccCCCchh
Q 022992          197 LNAGICQLCKGDVVAITNALERYQDMDPT------FSGTREYRLLSDIAASMD----EEDIAKFTDVVKEFDSMTPLDPW  266 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~~~~~~~~~~~------~~~~~e~~~l~~l~~a~~----~~d~~~~~~al~~~~~~~~~d~~  266 (289)
                      ..+|.++...|++++|...+++++.+.+.      .......  ...+.....    ......+..+...+..+....|.
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI--WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH--HHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH--HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence            78899999999999999999998775221      1111111  111111111    22234566666666666666666


Q ss_pred             HHHHHHHHHHhcc
Q 022992          267 KTTLLLRVKEKLK  279 (289)
Q Consensus       267 ~~~~~~~~~~~~~  279 (289)
                      ....+..+...+.
T Consensus       251 ~~~~~~~la~~~~  263 (283)
T 3edt_B          251 VNTTLRSLGALYR  263 (283)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.71  E-value=8e-16  Score=136.62  Aligned_cols=225  Identities=16%  Similarity=0.176  Sum_probs=115.2

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |++++|...|.++              +.++...|++++|..+|.++++....      .+.++.++|.++... ++++|
T Consensus       115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A  188 (388)
T 1w3b_A          115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGCVFNAQGEIWLA  188 (388)
T ss_dssp             SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence            5666666666554              34455566666666666666554211      133455555555444 66666


Q ss_pred             HHHHHHHHHHHHhc--------------CCHHH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           92 ISCLEQAVNMFCDI--------------GRLSM--------------AARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        92 ~~~~~~A~~~~~~~--------------g~~~~--------------~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      +.+|++++.+.+..              |++..              ...++.++|.++...|++++|+.+|++++++.+
T Consensus       189 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  268 (388)
T 1w3b_A          189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP  268 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            66666665543221              11000              123445555555555555555555555555433


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      ..      ..++..+|.++...|++++|+.+|++++...+.       ....+..++.++...|++++|...+++++++.
T Consensus       269 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          269 HF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-------HADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             SC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            21      134556666666666666666666666533211       12234455566666666666666666665554


Q ss_pred             CCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          224 PTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       224 ~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      |...     .....++..+. .|+   +.+|+..|.....++|.+...+..+...+
T Consensus       336 p~~~-----~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          336 PEFA-----AAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             TTCH-----HHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CCcH-----HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence            4321     22334444432 333   34455555555555666666665555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=1e-15  Score=135.98  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=135.3

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH--------------hcCCHHHH------
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHL--------------KLESKHEA------   72 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~--------------~~~~~~~a------   72 (289)
                      |++++|...|.++              +.++...|++++|...|.+++++..              ..|++..+      
T Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  228 (388)
T 1w3b_A          149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR  228 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6777777777665              3456667777777777777765422              11111111      


Q ss_pred             --------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           73 --------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        73 --------a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                              ..++.++|.+|... ++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++++.+
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  302 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCP  302 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence                    23444555555444 6666666666666553321      34788999999999999999999999999865


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      ..      ..++..+|.++...|++++|+..|++++...+       .....+..++.++...|++++|...|++++++.
T Consensus       303 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          303 TH------ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             TC------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            43      35789999999999999999999999973211       123456788999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHHHHHH
Q 022992          224 PTFSGTREYRLLSDIAASM  242 (289)
Q Consensus       224 ~~~~~~~e~~~l~~l~~a~  242 (289)
                      |.+.     .....++..+
T Consensus       370 p~~~-----~a~~~lg~~~  383 (388)
T 1w3b_A          370 PTFA-----DAYSNMGNTL  383 (388)
T ss_dssp             TTCH-----HHHHHHHHHH
T ss_pred             CCCH-----HHHHhHHHHH
Confidence            7653     3344555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.70  E-value=7.1e-16  Score=135.72  Aligned_cols=235  Identities=9%  Similarity=0.023  Sum_probs=170.8

Q ss_pred             HhhHHHHHHHHHHhhcc---------CCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNG---------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~---------~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~   60 (289)
                      ..+|..++.++-+....         ..++. |++++|...|.++              |.+|...|++++|..+|.+++
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  160 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI  160 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            56788888877655431         11233 9999999999998              567889999999999999999


Q ss_pred             HHHHhcCCHH----HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           61 NCHLKLESKH----EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFF  135 (289)
Q Consensus        61 ~~~~~~~~~~----~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y  135 (289)
                      ++........    +.+..+..+|.++... ++++|+.+|++++.+.+...+    +.++..+|.++...|++++|+.+|
T Consensus       161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~  236 (365)
T 4eqf_A          161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAF  236 (365)
T ss_dssp             HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9866432211    2355666778888877 999999999999998665333    458899999999999999999999


Q ss_pred             HHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (289)
Q Consensus       136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~  215 (289)
                      ++++++.+..      ..++..+|.++...|++++|+.+|++++...+.       ....+.++|.++...|++.+|...
T Consensus       237 ~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          237 NAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-------FIRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999986543      358899999999999999999999999854321       234577889999999999999999


Q ss_pred             HHHHhhcCCCCCCc-------hHHHHHHHHHHHHc-ccCHHHHHHHHHh
Q 022992          216 LERYQDMDPTFSGT-------REYRLLSDIAASMD-EEDIAKFTDVVKE  256 (289)
Q Consensus       216 ~~~~~~~~~~~~~~-------~e~~~l~~l~~a~~-~~d~~~~~~al~~  256 (289)
                      |++++++.|.....       ....+...++.++. .|+.+....+...
T Consensus       304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999988765321       01245566666664 6777776666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.69  E-value=2.1e-15  Score=129.45  Aligned_cols=149  Identities=12%  Similarity=0.026  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLSM  110 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~~  110 (289)
                      +.++...+.++...+++++|+.+|.+++++....+++...+.++.++|.+|... ++++|+.+|++|+.++... ++...
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            334444566677788999999999999998777777778888999999999877 9999999999999999888 78889


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ  181 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~  181 (289)
                      .+.++.++|.++..+|++++|+.+|++|+++.+..++....+.++.++|.++..+| .+++|+++|++++..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888888999999999999999 579999999999743

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=1.2e-15  Score=125.51  Aligned_cols=179  Identities=13%  Similarity=0.093  Sum_probs=131.2

Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      .++..+...++.     |++++|+..|.++              |.++...|++++|+.+|.+++++....      ..+
T Consensus         7 ~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a   75 (217)
T 2pl2_A            7 NPLRLGVQLYAL-----GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------LGG   75 (217)
T ss_dssp             HHHHHHHHHHHT-----TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHH
Confidence            444444444442     5788888888776              678889999999999999999985432      446


Q ss_pred             HHHHHHHHc-c-----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           76 YVDAAHCYK-K-----------TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        76 ~~~~a~~~~-~-----------~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      +..+|.++. .           .++++|+.+|++++++.+..      +.++.++|.++...|++++|+.+|++|+++. 
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-  148 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE-  148 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence            777787773 4           58999999999999987643      3588999999999999999999999999986 


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                      .  .    ..++.++|.++..+|++++|+..|++++...+++       ...+.+++.++...|++++|...|++.
T Consensus       149 ~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          149 D--T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-------LDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             C--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTC--------------
T ss_pred             c--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            2  1    3578999999999999999999999998553222       245677889999999999999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.68  E-value=9.7e-14  Score=122.55  Aligned_cols=225  Identities=10%  Similarity=-0.060  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      .+.....+.++...|++++|...+.+++.... .+++...+.++..+|.++... ++++|+.++++++.+.+..|++...
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            44555567778889999999999999998763 445566777888999998766 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      +.++.++|.++...|++++|+.+|++++.+.+..+..  .....++..+|.++...|++++|..++++++........ .
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~  171 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-Q  171 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-G
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-H
Confidence            9999999999999999999999999999999877654  456678899999999999999999999999855433211 1


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHH--HHHH-HHcccCHHHHHHHHHhcccc
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLS--DIAA-SMDEEDIAKFTDVVKEFDSM  260 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~--~l~~-a~~~~d~~~~~~al~~~~~~  260 (289)
                      . ....+..++.++...|++++|...++++..+.+............  .++. ....|+.+.....+......
T Consensus       172 ~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          172 Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            1 234566788899999999999999999987654433221111111  1222 22578877666665554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=4.1e-15  Score=127.65  Aligned_cols=168  Identities=12%  Similarity=0.057  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992            9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------------ANSFKLAKSWDKAGATYVKLANCHLKLES   68 (289)
Q Consensus         9 ~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   68 (289)
                      ..++.++...+..     ++|++|.+.+.++                    +.++...|++++|+.+|.+++++.....+
T Consensus        76 ~~l~~~~~~~~~~-----~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           76 KQFKDQVIMLCKQ-----KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHh-----hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            3444444444432     5777777777644                    45567788999999999999998877777


Q ss_pred             HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~-~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      ....+.++.++|.+|... ++++|+.+|++|+.++...++. ...+.++.++|.++..+|++++|+.+|++|+++.+..+
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            777889999999999877 9999999999999998877654 34458999999999999999999999999999988777


Q ss_pred             ccchHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHH
Q 022992          147 VTTSANQCKQKVAQYAAELEQYHKS-IEIYEEIARQ  181 (289)
Q Consensus       147 ~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~  181 (289)
                      .....+.++.++|.++..+|++++| ..+|++++..
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            7777889999999999999999999 7789998743

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=1e-15  Score=147.06  Aligned_cols=166  Identities=13%  Similarity=0.170  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      ++.+...|.+|...|++++|+.+|++|+++....      +.++.++|.+|.+. ++++|+.+|++|+++.+..      
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------   76 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------   76 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence            4567788999999999999999999999985432      56899999999887 9999999999999986643      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +.++.++|.++..+|++++|+++|++|+++.+..      ..++.++|.++..+|++++|++.|++++.....       
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-------  143 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-------  143 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence            5589999999999999999999999999986643      368999999999999999999999999855322       


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      ....+.++|.++...|++.+|.+.+++++++.
T Consensus       144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV  175 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence            23467889999999999999999999887653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.66  E-value=7.1e-15  Score=128.92  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |++++|..+|.++              |.++...|++++|..+|.+++++...      ...++..+|.+|... ++++|
T Consensus        78 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A  151 (368)
T 1fch_A           78 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD------NQTALMALAVSFTNESLQRQA  151 (368)
T ss_dssp             TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence            6777777777776              55677788888888888888776432      133555666666554 66666


Q ss_pred             HHHHHHHHHHHHhcCCHHH---------------------------------------------HHHHHHHHHHHHHhcC
Q 022992           92 ISCLEQAVNMFCDIGRLSM---------------------------------------------AARYYKEIAELYESEH  126 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~---------------------------------------------~a~~l~~la~~~~~~g  126 (289)
                      +.++++++.+.+.......                                             .+.++..+|.++...|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g  231 (368)
T 1fch_A          152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  231 (368)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence            6666666554432211100                                             2345555566666556


Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  206 (289)
                      ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++....       .....+..+|.++...
T Consensus       232 ~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          232 EYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLGISCINL  298 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHC
Confidence            6666666666665553321      23555566666666666666666666553211       1112344555555556


Q ss_pred             CCHHHHHHHHHHHhhcCCC
Q 022992          207 GDVVAITNALERYQDMDPT  225 (289)
Q Consensus       207 gd~~~A~~~~~~~~~~~~~  225 (289)
                      |++..|...|++++.+.|.
T Consensus       299 g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            6666666666665555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.65  E-value=4.5e-15  Score=130.21  Aligned_cols=199  Identities=12%  Similarity=0.047  Sum_probs=146.5

Q ss_pred             CCCCHHHHHH-HHH------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992           25 FGSKYEDAAD-LFD------------------KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus        25 ~~~~~~~A~~-~~~------------------~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      |-++|++|++ .|.                  ..|.++...|++++|+.+|.++++....      ...++..+|.++..
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~  110 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAE  110 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence            4467777776 544                  4578899999999999999999987432      24578889999977


Q ss_pred             C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch--------------
Q 022992           86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS--------------  150 (289)
Q Consensus        86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~--------------  150 (289)
                      . ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+.......              
T Consensus       111 ~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 1fch_A          111 NEQELLAISALRRCLELKPDN------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS  184 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             CcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence            7 9999999999999886542      457888899998889999999999888877654332221              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHH
Q 022992          151 -------------------------------ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNA  199 (289)
Q Consensus       151 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  199 (289)
                                                     ...++..+|.++...|++++|+.+|++++.....       ....+..+
T Consensus       185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~l  257 (368)
T 1fch_A          185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-------DYLLWNKL  257 (368)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHH
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------CHHHHHHH
Confidence                                           3467888999999999999999999999754321       13456778


Q ss_pred             HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992          200 GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDI  247 (289)
Q Consensus       200 ~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~  247 (289)
                      |.++...|++..|...|++++.+.|...     .....++..+. .|+.
T Consensus       258 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          258 GATLANGNQSEEAVAAYRRALELQPGYI-----RSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCCH
Confidence            8899999999999999999988876532     34555666553 5664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.65  E-value=7.8e-15  Score=126.32  Aligned_cols=223  Identities=12%  Similarity=0.056  Sum_probs=170.3

Q ss_pred             HhhHHHHHHHHHHhhccC---------CCC-CC-CHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW---------GLF-GS-KYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKL   59 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~---------~~~-~~-~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a   59 (289)
                      ..+|..++.++-+.-...         .++ .+ ++++|..+|.++              +.++...|++++|+.+|.++
T Consensus        72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  151 (330)
T 3hym_B           72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA  151 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            467777777776544311         112 26 899999999987              56788999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           60 ANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKA  138 (289)
Q Consensus        60 ~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A  138 (289)
                      ++.....      ...+..+|.+|... ++++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|+++
T Consensus       152 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          152 AQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9886542      23566689998777 9999999999999886543      468999999999999999999999999


Q ss_pred             HHHHhccCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH
Q 022992          139 ADMFQNEEVT---TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA  215 (289)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~  215 (289)
                      +++.+..+..   .....++..+|.++...|++++|+.+|++++.....       ....+..+|.++...|++..|...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-------NASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-------chHHHHHHHHHHHHhccHHHHHHH
Confidence            9998765543   223468899999999999999999999999854321       234567889999999999999999


Q ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHH--cccCHHHHH
Q 022992          216 LERYQDMDPTFSGTREYRLLSDIAASM--DEEDIAKFT  251 (289)
Q Consensus       216 ~~~~~~~~~~~~~~~e~~~l~~l~~a~--~~~d~~~~~  251 (289)
                      |++++++.|...     .....++.++  ..|+.+.+.
T Consensus       293 ~~~al~~~p~~~-----~~~~~l~~~~~~~~g~~~a~~  325 (330)
T 3hym_B          293 FHTALGLRRDDT-----FSVTMLGHCIEMYIGDSEAYI  325 (330)
T ss_dssp             HHTTTTTCSCCH-----HHHHHHHHHHHTTTTC-----
T ss_pred             HHHHHccCCCch-----HHHHHHHHHHHHHhCchhccC
Confidence            999988876643     2344455544  366655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=1.3e-15  Score=128.25  Aligned_cols=239  Identities=14%  Similarity=0.085  Sum_probs=170.6

Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      .++..|...++.     +++++|...|.++              +.+|...|++++|+.+|.++++. .  +++...+.+
T Consensus         5 ~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~   76 (272)
T 3u4t_A            5 VEFRYADFLFKN-----NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSAD   76 (272)
T ss_dssp             CHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHH
T ss_pred             HHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHH
Confidence            344444444442     6788888888877              56888999999999999999982 2  344445677


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      +..+|.++... ++++|+.+|++++++.+...      .++..+|.++...|++++|+.+|++++++.+.      ...+
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~  144 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKV  144 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHH
Confidence            89999999877 99999999999999876544      48999999999999999999999999987332      2357


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC---HHHHHHHHHHHhhcCCCCCCch-
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD---VVAITNALERYQDMDPTFSGTR-  230 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd---~~~A~~~~~~~~~~~~~~~~~~-  230 (289)
                      +..+|......+++++|+.+|++++......       ...+...|.++...|+   +..|...+++++++....+... 
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  217 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK  217 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch
Confidence            8899944444569999999999998543221       2345667888887787   7789999999887654333211 


Q ss_pred             --HHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          231 --EYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       231 --e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                        -......++..+. .|+.   .+|+..|+....++|.+......+....
T Consensus       218 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          218 DELIEANEYIAYYYTINRDK---VKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence              1244555666553 5554   4555555556566677666666555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.65  E-value=3.4e-15  Score=133.36  Aligned_cols=223  Identities=7%  Similarity=-0.001  Sum_probs=160.5

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKS-WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNE   90 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~   90 (289)
                      +++++|+.+|.++              |.++...|+ +++|+.+|.+++++..+.      ..+|.+.|.++... ++++
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~g~~~~~~g~~~e  184 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRDPSQ  184 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTT
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHccCHHH
Confidence            5677777777776              456777785 888888888888775432      45777788888666 8888


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH-hcCHH
Q 022992           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE-LEQYH  169 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  169 (289)
                      |+.+|++|+++.+.+-      .++.++|.++..+|++++|+.+|++++++.+..      ..+++++|.++.. .|.++
T Consensus       185 Al~~~~kal~ldP~~~------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          185 ELEFIADILNQDAKNY------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHHHHhCccCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcch
Confidence            8888888888766543      488888888888899999999999998886653      2578888888888 55557


Q ss_pred             HH-----HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC--CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992          170 KS-----IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG--DVVAITNALERYQDMDPTFSGTREYRLLSDIAASM  242 (289)
Q Consensus       170 ~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~  242 (289)
                      +|     +.+|++++.....       ....+++++.++...|  ++.+|.+.+.+. +..+.   +.  ..+..++..+
T Consensus       253 eA~~~~el~~~~~Al~l~P~-------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~---~~--~al~~La~~~  319 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS---SP--YLIAFLVDIY  319 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC---CH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC---CH--HHHHHHHHHH
Confidence            77     4788888754322       1235667777776666  678888888775 44433   22  3455566655


Q ss_pred             c-cc-----CH-HHHHHHHHhcccc-CCCchhHHHHHHHHHHhccc
Q 022992          243 D-EE-----DI-AKFTDVVKEFDSM-TPLDPWKTTLLLRVKEKLKA  280 (289)
Q Consensus       243 ~-~~-----d~-~~~~~al~~~~~~-~~~d~~~~~~~~~~~~~~~~  280 (289)
                      . .+     +. +.+.+|++.|..+ ..+||.....|..+...|..
T Consensus       320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            3 22     22 2468999999999 78999999888877777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=7.2e-14  Score=116.20  Aligned_cols=212  Identities=11%  Similarity=0.027  Sum_probs=163.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      .+.......+...|.++...|++++|..+|.++++....      ...++..+|.+|... ++++|++++++++.+.+..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  104 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRN  104 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence            566666888889999999999999999999999987432      256788899999777 9999999999999886532


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                            ..++..+|.++...|++++|+.+|++++.    .+.......++..+|.++...|++++|+.+|++++..... 
T Consensus       105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-  173 (252)
T 2ho1_A          105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-  173 (252)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-
T ss_pred             ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-
Confidence                  45889999999999999999999999987    2222345578899999999999999999999999754321 


Q ss_pred             cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCc
Q 022992          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLD  264 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d  264 (289)
                            ....+..++.++...|++..|...+++++...|..   .+  ....++..+ ..|+.+.....++......+-+
T Consensus       174 ------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          174 ------QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN---AR--SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC---HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence                  13356778889999999999999999998876542   22  233445444 4777766655555544444444


Q ss_pred             hh
Q 022992          265 PW  266 (289)
Q Consensus       265 ~~  266 (289)
                      +.
T Consensus       243 ~~  244 (252)
T 2ho1_A          243 LE  244 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=9.7e-14  Score=120.54  Aligned_cols=209  Identities=15%  Similarity=0.077  Sum_probs=129.5

Q ss_pred             HhhHHHHHHHHHHhhcc---------CCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNG---------WGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLA   60 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~---------~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~   60 (289)
                      ..+|..++.++-+.-..         ..++. |++++|...|.++              |.++...|++++|..+|.+++
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   98 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL   98 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            45666666666443321         01223 6777777777766              445666777777777777776


Q ss_pred             HHHHhcCCHHHH---------HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           61 NCHLKLESKHEA---------AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQ  130 (289)
Q Consensus        61 ~~~~~~~~~~~a---------a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~  130 (289)
                      ......++....         ...+...|.++... ++++|+.++++++...+..      ..++..+|.++...|++++
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  172 (359)
T 3ieg_A           99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRK  172 (359)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHH
Confidence            553200001111         11122235666555 8888888888888775532      3578899999999999999


Q ss_pred             HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch-----hhHHHHHHHHHHc
Q 022992          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV-----KGHLLNAGICQLC  205 (289)
Q Consensus       131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~l~  205 (289)
                      |+.+|++++.+.+..      ..++..+|.++...|++++|+..|++++......+......     .......+.++..
T Consensus       173 A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  246 (359)
T 3ieg_A          173 AISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  246 (359)
T ss_dssp             HHHHHHHHHTTCSCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999875432      35789999999999999999999999975432221100000     0001122445555


Q ss_pred             cCCHHHHHHHHHHHhhcCCC
Q 022992          206 KGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       206 ~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .|++..|...+++++...|.
T Consensus       247 ~~~~~~A~~~~~~~~~~~~~  266 (359)
T 3ieg_A          247 DGRYTDATSKYESVMKTEPS  266 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCCS
T ss_pred             cCCHHHHHHHHHHHHhcCCC
Confidence            56666666666666555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=7.9e-14  Score=121.13  Aligned_cols=247  Identities=16%  Similarity=0.091  Sum_probs=176.5

Q ss_pred             HhhHHHHHHHHHHhhccC---------CCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDKA-----------------------------ANSFKL   45 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~---------~~~~-~~~~~A~~~~~~A-----------------------------~~~~~~   45 (289)
                      ..+|...+.++-+.-...         .++. |++++|...|.++                             +.++..
T Consensus        53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  132 (359)
T 3ieg_A           53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD  132 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777777776543311         1223 8888888888877                             567888


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .|++++|+.++.++++.....      ..++..+|.++... ++++|+.++++++...+..      ..++..+|.++..
T Consensus       133 ~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~  200 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQ  200 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            999999999999999875421      45788899999777 9999999999999875432      3589999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCccch------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEEVTTS------ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      .|++++|+.+|++++++.+.......      .......+|.++...|++++|+..|++++.....++   ......+..
T Consensus       201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~  277 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA---EYTVRSKER  277 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch---HHHHHHHHH
Confidence            99999999999999998765432111      011234568899999999999999999985543221   112234566


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHH
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRV  274 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~  274 (289)
                      +|.++...|++..|...+++++++.|...     .....++..+. .|+.+   +|+..|.....++|.+......+
T Consensus       278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~---~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          278 ICHCFSKDEKPVEAIRICSEVLQMEPDNV-----NALKDRAEAYLIEEMYD---EAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHH---HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCChHHHHHH
Confidence            78899999999999999999998866532     34556666653 66654   44444444444555544444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=1.3e-13  Score=111.92  Aligned_cols=207  Identities=11%  Similarity=0.072  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      -...+...|.++...|++++|+.+|.++++.....      ..++..+|.++... ++++|+.++++++.+.+..     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----   75 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-----   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence            35567778889999999999999999999875432      45788889999776 9999999999999886532     


Q ss_pred             HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          111 AARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       111 ~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                       ..++..+|.++... |++++|+.+|+++++    .+.......++..+|.++...|++++|+.+|++++.....     
T Consensus        76 -~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----  145 (225)
T 2vq2_A           76 -AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-----  145 (225)
T ss_dssp             -HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred             -hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence             45889999999999 999999999999998    1222334568899999999999999999999999754321     


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC-CCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCchh
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP-TFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDPW  266 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~-~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~~  266 (289)
                        ....+..++.++...|++..|...+++++.+.| ..   .+.  ...+...+ ..|+.+......+......+-+|.
T Consensus       146 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          146 --FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADD--LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence              123567788899999999999999999988766 32   222  22333333 467766655555554444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=5.5e-14  Score=118.85  Aligned_cols=201  Identities=13%  Similarity=0.192  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----C
Q 022992           27 SKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T   86 (289)
Q Consensus        27 ~~~~~A~~~~~~A------------~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~----~   86 (289)
                      +++++|..+|.++            |.+|..    .+++++|+.+|.++++.    +    ...++..+|.+|..    .
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~   91 (273)
T 1ouv_A           20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVS   91 (273)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSC
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcc
Confidence            5788888877776            567888    99999999999999876    2    25678889999976    5


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                       ++++|+.+|++|++.    +    ...++.++|.++..    .+++++|+.+|++|++..        ...++.++|.+
T Consensus        92 ~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~  155 (273)
T 1ouv_A           92 QNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------DGDGCTILGSL  155 (273)
T ss_dssp             CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------cHHHHHHHHHH
Confidence             999999999999875    2    35689999999998    899999999999999852        13578899999


Q ss_pred             HHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992          162 AAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYR  233 (289)
Q Consensus       162 ~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~  233 (289)
                      +..    .+++++|+.+|++++..  +       ....+..+|.++..    .+++..|...|+++++..+     .  .
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~--~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----~--~  219 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDL--K-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-----G--G  219 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT--T-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-----H--H
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC--C-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-----H--H
Confidence            998    99999999999999732  1       12456778899988    8999999999999987643     2  3


Q ss_pred             HHHHHHHHHcccC--HHHHHHHHHhccccCCCchhH
Q 022992          234 LLSDIAASMDEED--IAKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       234 ~l~~l~~a~~~~d--~~~~~~al~~~~~~~~~d~~~  267 (289)
                      ....++..+..|.  ...+.+|+..|.....++|..
T Consensus       220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            3555666664311  233344444444444444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=5.8e-15  Score=131.85  Aligned_cols=214  Identities=7%  Similarity=0.030  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C-HHHHHHHHHHHHHHHHhcCCHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S-SNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~-~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      .+.+...+.++...|++++|+.+|.+++.+....      ..++.+.|.++... + +++|+.+|++|+.+.++.     
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----  165 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----  165 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----
Confidence            4557778889999999999999999999885432      56888899999776 5 999999999999997764     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                       ..++.++|.++..+|++++|+.+|++|+++.+..      ..++.++|.++..+|++++|+.+|++++.....      
T Consensus       166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------  232 (382)
T 2h6f_A          166 -YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------  232 (382)
T ss_dssp             -HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------
T ss_pred             -HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------
Confidence             3489999999999999999999999999987654      368999999999999999999999999865322      


Q ss_pred             chhhHHHHHHHHHHc-cCCHHHH-----HHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCC
Q 022992          191 GVKGHLLNAGICQLC-KGDVVAI-----TNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPL  263 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~-~gd~~~A-----~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~  263 (289)
                       ...++++.|.++.. .|..+.|     ..+|++++.+.|...     .....++..+. .| ...+.+++..+..+ ..
T Consensus       233 -~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~-----~a~~~l~~ll~~~g-~~~~~~a~~~~~~~-~~  304 (382)
T 2h6f_A          233 -NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE-----SAWNYLKGILQDRG-LSKYPNLLNQLLDL-QP  304 (382)
T ss_dssp             -CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHTTTC-GGGCHHHHHHHHHH-TT
T ss_pred             -CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHccC-ccchHHHHHHHHHh-cc
Confidence             23467788888877 5554666     588999999888754     23344444443 33 12233444444444 45


Q ss_pred             chhHHHHHHHHHHhc
Q 022992          264 DPWKTTLLLRVKEKL  278 (289)
Q Consensus       264 d~~~~~~~~~~~~~~  278 (289)
                      +|-+...+..+.+.+
T Consensus       305 ~p~~~~al~~La~~~  319 (382)
T 2h6f_A          305 SHSSPYLIAFLVDIY  319 (382)
T ss_dssp             TCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            554444444444333

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.61  E-value=2.6e-14  Score=131.17  Aligned_cols=197  Identities=9%  Similarity=0.121  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           35 LFDKAANSFKLAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      .+...|.++...|++ ++|+.+|.+++++....      +.++..+|.+|... ++++|+.+|++|+++.+.       .
T Consensus       104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~  170 (474)
T 4abn_A          104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------K  170 (474)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------H
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------H
Confidence            344457788889999 99999999999885432      56889999999777 999999999999988532       3


Q ss_pred             HHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh--------cCHHHHHHHH
Q 022992          113 RYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------EQYHKSIEIY  175 (289)
Q Consensus       113 ~~l~~la~~~~~~---------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~  175 (289)
                      .++.++|.++...         |++++|+.+|++|+++.+..      ..++..+|.++..+        |++++|+.+|
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            7999999999999         99999999999999987654      35789999999999        9999999999


Q ss_pred             HHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHH
Q 022992          176 EEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVK  255 (289)
Q Consensus       176 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~  255 (289)
                      ++++.....    .......++++|.++...|++++|...|++++++.|...     .....+...+.  ....+.+|+.
T Consensus       245 ~~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~a~~~l~~~~~--~lg~~~eAi~  313 (474)
T 4abn_A          245 AQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP-----EPQQREQQLLE--FLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH--HHHHHHHHHH
Confidence            999855321    012345678899999999999999999999999887753     22334444432  2456788888


Q ss_pred             hccccC
Q 022992          256 EFDSMT  261 (289)
Q Consensus       256 ~~~~~~  261 (289)
                      .+..+.
T Consensus       314 ~~~~~~  319 (474)
T 4abn_A          314 SKGKTK  319 (474)
T ss_dssp             HTTTCC
T ss_pred             Hhcccc
Confidence            877664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.61  E-value=4.5e-14  Score=131.95  Aligned_cols=227  Identities=12%  Similarity=0.048  Sum_probs=161.4

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |++++|...|.++              +.+|...|++++|..+|.++.++...      ...++..++.+|.+. ++++|
T Consensus       353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A  426 (597)
T 2xpi_A          353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQA  426 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Confidence            5666666655544              34566677777777777777665321      134666777777655 88888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +++|++++...+..      ..++..+|.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|
T Consensus       427 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          427 ISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHH
Confidence            88888888775543      3478889999999999999999999999875542      25789999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHH
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKF  250 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~  250 (289)
                      +++|+++.......+.........+..++.++...|+++.|...|++++++.|...     .....++..+. .|+.   
T Consensus       495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~---  566 (597)
T 2xpi_A          495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA-----NVHTAIALVYLHKKIP---  566 (597)
T ss_dssp             HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH-----HHHHHHHHHHHHTTCH---
T ss_pred             HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHhCCH---
Confidence            99999998554321111111244677889999999999999999999988775432     34556666664 6654   


Q ss_pred             HHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          251 TDVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       251 ~~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      ++|...|+.+..++|.+...+..+.+.+.
T Consensus       567 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          567 GLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            44555555565667777777777766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.61  E-value=2.5e-13  Score=116.67  Aligned_cols=218  Identities=11%  Similarity=0.017  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA   72 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a   72 (289)
                      .+..++..|...++.     +++++|..+|.++              +.++...|++++|..+|.++++.....      
T Consensus        20 ~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------   88 (327)
T 3cv0_A           20 YHENPMEEGLSMLKL-----ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------   88 (327)
T ss_dssp             GSSCHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             hhHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC------
Confidence            344445555444442     4666666666665              556777788888888888877663211      


Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-----------------------------CCHHH------------
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-----------------------------GRLSM------------  110 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-----------------------------g~~~~------------  110 (289)
                      ..++..+|.++... ++++|+.++++++...+..                             |++..            
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            33455555555444 6666666666655432211                             11111            


Q ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          111 --AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       111 --~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                        ...++..+|.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....    
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----  238 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGNRPQEALDAYNRALDINPG----  238 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Confidence              24567788888888899999999999988875432      357788899999999999999999888744221    


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch-------HHHHHHHHHHHHc-ccCHH
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR-------EYRLLSDIAASMD-EEDIA  248 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~-------e~~~l~~l~~a~~-~~d~~  248 (289)
                         ....+..++.++...|++..|...|++++.+.|......       .......++..+. .|+.+
T Consensus       239 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          239 ---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence               123466778888888999999999988888776632111       2344555665553 55543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.60  E-value=1.9e-13  Score=123.10  Aligned_cols=134  Identities=14%  Similarity=0.102  Sum_probs=94.2

Q ss_pred             HHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992           80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (289)
Q Consensus        80 a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l  158 (289)
                      |.++... ++++|+.+|++++.+.+.      ...++..+|.++...|++++|+.+|++++++.+..      ..++..+
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l  217 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKI  217 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            4444443 666777777766665432      23467888999999999999999999999886543      3678999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhccccccc-----hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG-----VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |.++...|++++|+..|++++............     ........+.++...|++.+|...|++++.+.|.
T Consensus       218 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999997443222110000     0001123367777889999999999988887665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.60  E-value=2.4e-13  Score=122.50  Aligned_cols=248  Identities=16%  Similarity=0.098  Sum_probs=175.3

Q ss_pred             HhhHHHHHHHHHHhhccC---------CCCC-CCHHHHHHHHHHH-----------------------------HHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW---------GLFG-SKYEDAADLFDKA-----------------------------ANSFKL   45 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~---------~~~~-~~~~~A~~~~~~A-----------------------------~~~~~~   45 (289)
                      ..+|...+.++-+.-...         .+.. |++++|...|.++                             +.++..
T Consensus        76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  155 (450)
T 2y4t_A           76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG  155 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777765543211         1222 8888888888876                             334778


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .|++++|+.+|.++++....      ...++..+|.+|... ++++|+.+|++++...+..      ..++..+|.++..
T Consensus       156 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~  223 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQ  223 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence            99999999999999986432      245788899999777 9999999999999986533      4689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCccchH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEEVTTSA------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      .|++++|+.+|++++.+.+........      ......+|.++...|++++|+.+|++++.....++   ......+..
T Consensus       224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~  300 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA---EYTVRSKER  300 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH---HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch---HHHHHHHHH
Confidence            999999999999999886643221110      11124459999999999999999999985432211   111235677


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHHHHH
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~  275 (289)
                      ++.++...|++..|...+++++.+.|...     .....++.++. .|+.+.   |+..|.....++|.+...+..+.
T Consensus       301 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNV-----NALKDRAEAYLIEEMYDE---AIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHH---HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhcCHHH---HHHHHHHHHHhCcchHHHHHHHH
Confidence            88899999999999999999988766532     44556776664 666544   44444444444444444443333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.60  E-value=1.7e-14  Score=118.70  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      +.+...|.++...|++++|+.+|.+++++.... +    ...+..+|.++... ++++|+.+|++++.+.+.      ..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-D----SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-C----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence            566778899999999999999999999886411 2    24566689999777 999999999999977543      45


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      .++..+|.++...|++++|+.+|++++++.+..... .....++..+|.++..+|++++|+..|++++...+.    .+ 
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~-  151 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK----KW-  151 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH----HH-
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC----cc-
Confidence            689999999999999999999999999998764321 234467999999999999999999999999733111    00 


Q ss_pred             hhhHHHHHHHHHHccCCH
Q 022992          192 VKGHLLNAGICQLCKGDV  209 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~  209 (289)
                      ....+.++|.++...|+.
T Consensus       152 ~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            234677888888766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=1.6e-14  Score=119.17  Aligned_cols=161  Identities=17%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      +.++...|++++|..+|.++++....      ...++..+|.++... ++++|+.++++++.+.+..      ..++..+
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~  131 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYML  131 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence            45566666666666666666655321      134555566666544 6666666666666654322      2356666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....       ....+..
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~  198 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-------HADAFYN  198 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-------CHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------cHHHHHH
Confidence            666666666666666666666654322      235566666666666666666666666533211       1223455


Q ss_pred             HHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          199 AGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       199 ~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ++.++...|++..|...+++++++.|.
T Consensus       199 la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          199 AGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            566666666666666666666665544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.59  E-value=1.4e-13  Score=126.69  Aligned_cols=204  Identities=12%  Similarity=0.110  Sum_probs=157.5

Q ss_pred             HhhHHHHHHHHHHhhc--------cCCCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLN--------GWGLFG-SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLAN   61 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k--------~~~~~~-~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~   61 (289)
                      ..+|...+.++-+.-.        +..++. +++++|...|.++              |.++...|++++|...|.+++.
T Consensus       259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4567777777755432        112334 8888988888887              5667788999999999999988


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           62 CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        62 ~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      .....      ..++..+|.++... ++++|+.++++++...+...      .++..+|.++...|++++|+.+|+++++
T Consensus       339 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          339 LNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------EVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            75432      24677888888766 99999999999998866543      3788899999999999999999999999


Q ss_pred             HHhccCccchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH
Q 022992          141 MFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV  210 (289)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~  210 (289)
                      +.+...........+..+|.++...          |++++|+.+|++++.....       ....+..+|.++...|++.
T Consensus       407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-------SEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccHH
Confidence            9887665544444567788888888          9999999999999754321       2245677899999999999


Q ss_pred             HHHHHHHHHhhcCCCCC
Q 022992          211 AITNALERYQDMDPTFS  227 (289)
Q Consensus       211 ~A~~~~~~~~~~~~~~~  227 (289)
                      +|...|++++++.|...
T Consensus       480 ~A~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          480 EAIELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHHHHHHHC--CH
T ss_pred             HHHHHHHHHHHhCCCcH
Confidence            99999999999887754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.59  E-value=1.2e-13  Score=116.17  Aligned_cols=183  Identities=17%  Similarity=0.105  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...|..+...|++++|+..|.++++.+...   .....++..+|.+|... ++++|+.+|++++..++....   ...
T Consensus        17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~   90 (261)
T 3qky_A           17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VPQ   90 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hHH
Confidence            44456777778999999999999999875432   23366888999999777 999999999999999876543   457


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHhcCHHHHHHH
Q 022992          114 YYKEIAELYES--------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAELEQYHKSIEI  174 (289)
Q Consensus       114 ~l~~la~~~~~--------~g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~  174 (289)
                      ++..+|.++..        .|++++|+..|+++++.++........           ...+..+|.++...|+|++|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            89999999998        899999999999999998765432211           11128899999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHcc----------CCHHHHHHHHHHHhhcCCCCC
Q 022992          175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCK----------GDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      |++++...+..+    .....++.+|.++...          |++++|...|+++++..|...
T Consensus       171 ~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          171 YEAVFDAYPDTP----WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHCTTST----THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHCCCCc----hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            999986543221    1345677888888766          888999999999998877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.58  E-value=3.9e-13  Score=111.70  Aligned_cols=176  Identities=16%  Similarity=0.085  Sum_probs=142.9

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      +++++|..+|.++              +.+|...|++++|..+|.++++....      ....+..+|.+|... ++++|
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A  124 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEA  124 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHH
Confidence            5777777777766              56788999999999999999987432      245788889998776 99999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.++++++.    .+.......++..+|.++...|++++|+.+|+++++..+..      ..++..+|.++...|++++|
T Consensus       125 ~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          125 YQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHH
Confidence            999999987    22333456789999999999999999999999999886542      35789999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      +.+|++++....       .....+..++.++...|++.+|...++++.++.|.
T Consensus       195 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          195 RQYYDLFAQGGG-------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHTTSC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCc-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            999999863221       12234566778888999999999999999887665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.57  E-value=1.9e-13  Score=125.91  Aligned_cols=249  Identities=13%  Similarity=0.069  Sum_probs=176.8

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYED----AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAA   80 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~----A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a   80 (289)
                      ..++...+.+|.+.++......|+...    -+..+...|.++...|++++|..+|.++++...     .  ...+..+|
T Consensus       211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-----~--~~~~~~l~  283 (537)
T 3fp2_A          211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-----T--PNSYIFLA  283 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----C--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-----C--chHHHHHH
Confidence            344555666776666531112233222    345577778899999999999999999998732     2  46788899


Q ss_pred             HHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992           81 HCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (289)
Q Consensus        81 ~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~  159 (289)
                      .++... ++++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+...      .++..+|
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la  351 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV------YPYIQLA  351 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS------HHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH
Confidence            999777 9999999999999887643      45899999999999999999999999999876543      5789999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch-HHHHHHHH
Q 022992          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR-EYRLLSDI  238 (289)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~-e~~~l~~l  238 (289)
                      .++...|++++|+.+|++++.....       ....+..+|.++...|++..|...|++++++.|...... ....+..+
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  424 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPT-------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK  424 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence            9999999999999999999854322       123567789999999999999999999988766544221 11112222


Q ss_pred             HHHHc-cc-------CHHHHHHHHHhccccCCCchhHHHHHHHHHHhcc
Q 022992          239 AASMD-EE-------DIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       239 ~~a~~-~~-------d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      +..+. .+       +...+.+|+..|.....++|.+...+..+...+.
T Consensus       425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  473 (537)
T 3fp2_A          425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL  473 (537)
T ss_dssp             HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            22221 20       1145566666666665556666666655555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=3.9e-14  Score=136.08  Aligned_cols=152  Identities=11%  Similarity=0.213  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      .-+.++.++|.+|.+. ++++|+.+|++|+++.+..      +.++.++|.++..+|++++|+.+|++|+++.+..    
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----   76 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----   76 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Confidence            4578999999999887 9999999999999997643      4589999999999999999999999999986643    


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCc
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGT  229 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~  229 (289)
                        ..++.++|.++..+|++++|++.|++++....       .....+.++|.++..+|++++|...|++++++.|.+.  
T Consensus        77 --~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~--  145 (723)
T 4gyw_A           77 --ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP--  145 (723)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--
Confidence              36899999999999999999999999985532       2245678899999999999999999999999988764  


Q ss_pred             hHHHHHHHHHHHHc-ccC
Q 022992          230 REYRLLSDIAASMD-EED  246 (289)
Q Consensus       230 ~e~~~l~~l~~a~~-~~d  246 (289)
                         ....+|+..+. .|+
T Consensus       146 ---~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A          146 ---DAYCNLAHCLQIVCD  160 (723)
T ss_dssp             ---HHHHHHHHHHHHTTC
T ss_pred             ---HHHhhhhhHHHhccc
Confidence               34556666553 555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=7.7e-13  Score=118.84  Aligned_cols=218  Identities=11%  Similarity=0.139  Sum_probs=164.7

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           46 AKSWDKAGATYVKLANCHLKLES-----------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~-----------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .|++++|++.|.++++..+..++           ......++.++|.+|... ++++|++++.+++.+....++......
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            34555555555555544433221           122345678899999776 999999999999999999998888889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      +...+|.++...|++++|+.+|++++.+.+..+.......+..++|.++...|+|++|+.+++++......... .....
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~~  175 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD-KPSLV  175 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-STHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-chhHH
Confidence            99999999999999999999999999999988888888899999999999999999999999999744322211 22344


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHHc-ccCH----HHHHHHHHhccccCCCc
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR--EYRLLSDIAASMD-EEDI----AKFTDVVKEFDSMTPLD  264 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~--e~~~l~~l~~a~~-~~d~----~~~~~al~~~~~~~~~d  264 (289)
                      ..+...+.++...||+.+|...+++++.+.+......  .+.+...++..+. .++.    ..+.+++..++.....+
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~  253 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN  253 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence            5677889999999999999999999987766555332  3445555555553 5664    45666777766665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=1.2e-13  Score=113.62  Aligned_cols=185  Identities=10%  Similarity=0.030  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      ..+.+.|.++... ++++|+.+|++++++.+. .+.    .++..+|.++...|++++|+.+|++++++.+.      ..
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hH
Confidence            5778889988776 999999999999998752 111    46777999999999999999999999987654      34


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC--CCCch
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT--FSGTR  230 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~--~~~~~  230 (289)
                      .++..+|.++..+|++++|+..|++++...+.++.........+..+|.++...|++++|...|++++++.|.  ..   
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---  153 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT---  153 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH---
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH---
Confidence            6899999999999999999999999986554432212223356788899999999999999999999987665  32   


Q ss_pred             HHHHHHHHHHHHc-ccCH------------------------HHHHHHHHhccccCCCchhHHHHHHHH
Q 022992          231 EYRLLSDIAASMD-EEDI------------------------AKFTDVVKEFDSMTPLDPWKTTLLLRV  274 (289)
Q Consensus       231 e~~~l~~l~~a~~-~~d~------------------------~~~~~al~~~~~~~~~d~~~~~~~~~~  274 (289)
                        .....++..+. .|+.                        +.+++|+..|.....++|.+...+..+
T Consensus       154 --~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  220 (228)
T 4i17_A          154 --DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ  220 (228)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence              23344444432 2221                        234667777777766666665444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=5.6e-14  Score=115.84  Aligned_cols=196  Identities=14%  Similarity=0.152  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~  109 (289)
                      -....+...|.++...|++++|..+|.++++....      ....+..+|.++... ++++|+.++++++.+.+..    
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----   90 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYINFANLLSSVNELERALAFYDKALELDSSA----   90 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence            34555667788888999999999999999875332      256788889998777 9999999999999886532    


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                        ..++..+|.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....     
T Consensus        91 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----  157 (243)
T 2q7f_A           91 --ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-----  157 (243)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----
T ss_pred             --hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----
Confidence              5688999999999999999999999999987543      357889999999999999999999999754321     


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHh
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKE  256 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~  256 (289)
                        ....+..+|.++...|+++.|...+++++...|...     .....++..+ ..|+.+.....++.
T Consensus       158 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          158 --DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-----DAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             --CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHccCHHHHHHHHHH
Confidence              123567788899999999999999999988766532     3455566655 36665444444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.55  E-value=1.9e-12  Score=120.84  Aligned_cols=224  Identities=13%  Similarity=0.062  Sum_probs=163.0

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      |++++|...|.++              +.++...|++++|...|.++......      ....+..+|.+|.+. ++++|
T Consensus       319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------SHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHhccHHHH
Confidence            7888888888876              34566788888888888887754221      245677788888776 99999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+...      .++..+|.++...|++++|
T Consensus       393 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          393 RRYFSKSSTMDPQF------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH------LPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS------HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------HHHHHHHHHHHHcCCHHHH
Confidence            99999999875432      34788999999999999999999999998765432      5788999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHc-ccCHH
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE--YRLLSDIAASMD-EEDIA  248 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e--~~~l~~l~~a~~-~~d~~  248 (289)
                      +++|+++......       ....+..++.++...|++++|...|+++.++.+..+..+.  ......++..+. .|+.+
T Consensus       461 ~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          461 NEYLQSSYALFQY-------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             HHHHHHHHHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence            9999999754321       2235677888999999999999999999887554332222  456777777764 77755


Q ss_pred             HHHHHHHhccccCCCchhHHHHHHHHHHhc
Q 022992          249 KFTDVVKEFDSMTPLDPWKTTLLLRVKEKL  278 (289)
Q Consensus       249 ~~~~al~~~~~~~~~d~~~~~~~~~~~~~~  278 (289)
                      ......+.   +..++|.+...+..+...+
T Consensus       534 ~A~~~~~~---~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          534 AAIDALNQ---GLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHHHHHH---HHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHhCCCChHHHHHHHHHH
Confidence            43333333   3233344444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=2.2e-13  Score=114.46  Aligned_cols=204  Identities=15%  Similarity=0.056  Sum_probs=161.2

Q ss_pred             HhhHHHHHHHHHHhhccC--C-------CC-CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW--G-------LF-GSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYV   57 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~--~-------~~-~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~   57 (289)
                      .++|...+.++-+.-...  .       ++ .+++++|.+.|.++                 |.+|...|++++|+.+|.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~   98 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ   98 (272)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            678888888886655321  1       12 38999999988876                 567888999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHhcCCHHHHHHHH
Q 022992           58 KLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA-ELYESEHNIEQTIVFF  135 (289)
Q Consensus        58 ~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la-~~~~~~g~~~~A~~~y  135 (289)
                      ++++.....      ..++..+|.+|... ++++|+.+|++++.+.+.      ...++..+| .++.. +++++|+.+|
T Consensus        99 ~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~-~~~~~A~~~~  165 (272)
T 3u4t_A           99 AAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT------DPKVFYELGQAYYYN-KEYVKADSSF  165 (272)
T ss_dssp             HHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC------CHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC------cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999975542      35788999999777 999999999999988332      245889999 66666 7999999999


Q ss_pred             HHHHHHHhccCccchHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHccCCHHH
Q 022992          136 EKAADMFQNEEVTTSANQCKQKVAQYAAELEQ---YHKSIEIYEEIARQSLNNNLL-KYGVKGHLLNAGICQLCKGDVVA  211 (289)
Q Consensus       136 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~l~~gd~~~  211 (289)
                      ++++++.+..      ..++..+|.++..+|+   +++|+..|++++......+.. .......+..+|.++...|++.+
T Consensus       166 ~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          166 VKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999987654      3578889999999998   999999999998554322211 11123567778999999999999


Q ss_pred             HHHHHHHHhhcCCCCC
Q 022992          212 ITNALERYQDMDPTFS  227 (289)
Q Consensus       212 A~~~~~~~~~~~~~~~  227 (289)
                      |...|+++++++|...
T Consensus       240 A~~~~~~al~~~p~~~  255 (272)
T 3u4t_A          240 ADAAWKNILALDPTNK  255 (272)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhcCccHH
Confidence            9999999999987753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=1.4e-13  Score=109.19  Aligned_cols=170  Identities=12%  Similarity=0.109  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~  150 (289)
                      .+..|.++|.+|... ++++|+.+|++|+++.+..      +.++..+|.++...|++++|+..+.+++...+..     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-----   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-----   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-----
Confidence            367899999999776 9999999999999987654      4589999999999999999999999999876543     


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR  230 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~  230 (289)
                       ..++..+|.++...++++.|+..+.++......       ....+..+|.++...|++++|...|++++++.|...   
T Consensus        73 -~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~---  141 (184)
T 3vtx_A           73 -AEAYYILGSANFMIDEKQAAIDALQRAIALNTV-------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI---  141 (184)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh---
Confidence             357888999999999999999999999754322       223567789999999999999999999999887643   


Q ss_pred             HHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHH
Q 022992          231 EYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKT  268 (289)
Q Consensus       231 e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~  268 (289)
                        .....++..+. .|+   +++|+..|...-.++|.+.
T Consensus       142 --~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          142 --RAYQSIGLAYEGKGL---RDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             --HHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred             --hHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCccCH
Confidence              34566777664 555   4556666666666677653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=2.9e-12  Score=103.96  Aligned_cols=176  Identities=11%  Similarity=0.051  Sum_probs=139.0

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc-c-CCHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK-K-TSSNE   90 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~-~-~~~~~   90 (289)
                      +++++|..+|.++              +.+|...|++++|..+|.+++.....      ....+..+|.++. . .++++
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~~   95 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCGRLNRPAE   95 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCCHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCcHHH
Confidence            5677777776665              56788999999999999999987532      1446778888884 4 59999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH
Q 022992           91 AISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK  170 (289)
Q Consensus        91 A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  170 (289)
                      |+.++++++.    .+.......++..+|.++...|++++|+.+|+++++..+..      ..++..+|.++...|++++
T Consensus        96 A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           96 SMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHH
Confidence            9999999988    22223356788999999999999999999999999986543      3578999999999999999


Q ss_pred             HHHHHHHHHHHHh-hccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          171 SIEIYEEIARQSL-NNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       171 A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |+.+|++++.... ..       ...+...+.++...|+...|...++......|.
T Consensus       166 A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQ-------ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             HHHHHHHHHHHHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCCCC-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            9999999985442 11       223445567778899999999999888776655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.54  E-value=1.1e-13  Score=108.74  Aligned_cols=173  Identities=10%  Similarity=0.070  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      +.....+...+.++...|++++|...+.+++.....      ...++..+|.++... ++++|+.++++++...+..   
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---   75 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---   75 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Confidence            455677888899999999999999999998866432      156788889998776 9999999999999885432   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                         ..++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.....    
T Consensus        76 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----  142 (186)
T 3as5_A           76 ---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN----  142 (186)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----
Confidence               4578999999999999999999999999986542      357899999999999999999999999754321    


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                         ....+..++.++...|++..|...+++++++.|...
T Consensus       143 ---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          143 ---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             ---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence               134567788999999999999999999988766543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.53  E-value=1.1e-12  Score=110.16  Aligned_cols=167  Identities=22%  Similarity=0.297  Sum_probs=133.3

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Q 022992            6 ARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLES   68 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   68 (289)
                      ..+..++..|...++.     |+|++|+..|.++                 |.+|...|++++|+..|.+++..+.....
T Consensus        13 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQ-----GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             SSHHHHHHHHHHHHHT-----TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4567777777777763     4777777777665                 67788999999999999999998764322


Q ss_pred             HHHHHHHHHHHHHHHcc--------C-CHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHhcCCH
Q 022992           69 KHEAAQAYVDAAHCYKK--------T-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAELYESEHNI  128 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~--------~-~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~~~~~~g~~  128 (289)
                         ...++..+|.++..        . ++++|+.+|++++..++.......+           +..+..+|.++...|++
T Consensus        88 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  164 (261)
T 3qky_A           88 ---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY  164 (261)
T ss_dssp             ---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence               34678889999976        5 9999999999999998876554322           22238899999999999


Q ss_pred             HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHh
Q 022992          129 EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL----------EQYHKSIEIYEEIARQSL  183 (289)
Q Consensus       129 ~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~a~~~~~  183 (289)
                      ++|+..|+++++.++...   ....++..+|.++..+          |++++|+..|++++...+
T Consensus       165 ~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          165 EAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            999999999999877532   3457889999999877          999999999999986543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=1.5e-12  Score=109.99  Aligned_cols=169  Identities=12%  Similarity=0.148  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----C-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~----~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      ..+...|.+|...|++++|..+|.++++    .++    ..++..+|.+|..    . ++++|+.+|++|++.    +  
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--   72 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N--   72 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence            3456778899999999999999999998    333    3578889999977    5 999999999999876    2  


Q ss_pred             HHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR  180 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~  180 (289)
                        .+.++..+|.++..    .+++++|+.+|++|++.    +    ...++..+|.++..    .+++++|+.+|++++.
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence              35689999999999    99999999999999986    1    23678999999999    9999999999999974


Q ss_pred             HHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992          181 QSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM  242 (289)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~  242 (289)
                      .  +       ....+.++|.++..    .+++++|...|+++.+..     ..  .....++..+
T Consensus       143 ~--~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~a~~~lg~~~  192 (273)
T 1ouv_A          143 L--N-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DS--PGCFNAGNMY  192 (273)
T ss_dssp             T--T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH--HHHHHHHHHH
T ss_pred             c--C-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CH--HHHHHHHHHH
Confidence            2  1       23356778888887    899999999999998752     12  3345566655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.52  E-value=1.9e-12  Score=106.68  Aligned_cols=180  Identities=13%  Similarity=0.029  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      +...|..+...|++++|+..|.+++..+....   ....++..+|.+|... ++++|+..|++++..++....   ...+
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a   80 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGP---YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYV   80 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHH
Confidence            34456677788999999999999998754322   2345788889999777 999999999999999887654   3345


Q ss_pred             HHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHhccCccchH-----------HHHHHHHHHHHHHh
Q 022992          115 YKEIAELYES------------------EHNIEQTIVFFEKAADMFQNEEVTTSA-----------NQCKQKVAQYAAEL  165 (289)
Q Consensus       115 l~~la~~~~~------------------~g~~~~A~~~y~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~  165 (289)
                      +..+|.++..                  .|++++|+..|+++++.++.......+           ......+|.++...
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~  160 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER  160 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6666666653                  589999999999999998876432211           12225788899999


Q ss_pred             cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          166 EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       166 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |++++|+..|++++...++++    .....+..+|.++..+|+.+.|...++......|.
T Consensus       161 ~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          161 GAWVAVVNRVEGMLRDYPDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             TCHHHHHHHHHHHHHHSTTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             CcHHHHHHHHHHHHHHCcCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            999999999999986543321    23356788999999999999999999988776554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.2e-12  Score=119.65  Aligned_cols=222  Identities=16%  Similarity=0.129  Sum_probs=153.1

Q ss_pred             HhhHHHHHHHHHHhhc-----------------------cCCCC-CCCHHHHHHHHHHH-------------HHHHHHcC
Q 022992            5 IARAEEFEKKAEKKLN-----------------------GWGLF-GSKYEDAADLFDKA-------------ANSFKLAK   47 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k-----------------------~~~~~-~~~~~~A~~~~~~A-------------~~~~~~~g   47 (289)
                      ..+|..++.++-+.+.                       +..++ .|++++|...|.++             +.++...|
T Consensus       205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~  284 (514)
T 2gw1_A          205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRN  284 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCC
Confidence            7788888888877321                       00112 25666666655554             34455556


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992           48 SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (289)
Q Consensus        48 ~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g  126 (289)
                      ++++|...|.+++......      ..++..+|.++... ++++|+.++++++.+.+..      ..++..+|.++...|
T Consensus       285 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~  352 (514)
T 2gw1_A          285 DSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYREN  352 (514)
T ss_dssp             CCTTGGGHHHHHHTTCTTC------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHHHhhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcC
Confidence            6666666666665543221      23566677777665 7888888888887765543      237888999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc-
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC-  205 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~-  205 (289)
                      ++++|+.+|+++++..+...      .++..+|.++...|++++|+.+|++++......+.. ......+..+|.++.. 
T Consensus       353 ~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~  425 (514)
T 2gw1_A          353 KFDDCETLFSEAKRKFPEAP------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI-YVGIAPLVGKATLLTRN  425 (514)
T ss_dssp             CHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC-SSCSHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHcccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHhhh
Confidence            99999999999998866433      578899999999999999999999998654433211 1112356788999999 


Q ss_pred             --cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHH
Q 022992          206 --KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKF  250 (289)
Q Consensus       206 --~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~  250 (289)
                        .|+++.|...|++++.+.|...     .....++..+ ..|+.+..
T Consensus       426 ~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          426 PTVENFIEATNLLEKASKLDPRSE-----QAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhcCHHHH
Confidence              9999999999999998876542     3345566655 36665443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.51  E-value=4.6e-12  Score=115.67  Aligned_cols=202  Identities=12%  Similarity=0.009  Sum_probs=141.7

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHH
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHE   71 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   71 (289)
                      .+.|..++..|...++.     |+|++|+..|.++             |.++...|++++|..+|.++++....      
T Consensus         3 ~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------   71 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRN-----KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------   71 (514)
T ss_dssp             HHHHHHHHHHHHHHHHT-----SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC------
T ss_pred             chhHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH------
Confidence            45777778888777763     5888998888887             56788899999999999999987432      


Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH------------------------------------------
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL------------------------------------------  108 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~------------------------------------------  108 (289)
                      ...++..+|.+|... ++++|+.+|++++...+.....                                          
T Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  151 (514)
T 2gw1_A           72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER  151 (514)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence            145778888888776 9999999999887654311000                                          


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhc-----cCc--
Q 022992          109 -------------------------------SMAARYYKEIAELYES---EHNIEQTIVFFEKAADMFQN-----EEV--  147 (289)
Q Consensus       109 -------------------------------~~~a~~l~~la~~~~~---~g~~~~A~~~y~~A~~~~~~-----~~~--  147 (289)
                                                     ...+..+...|.++..   .|++++|+.+|+++++.++.     ...  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  231 (514)
T 2gw1_A          152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK  231 (514)
T ss_dssp             -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred             HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence                                           0015566777776665   68899999999999884321     111  


Q ss_pred             -cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          148 -TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       148 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                       ......++..+|.++...|++++|+.+|++++....       . ...+..++.++...|++..|...+++++.+.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  302 (514)
T 2gw1_A          232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN  302 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence             134456788889999999999999999988864321       1 234455566666666666666666666655544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=8e-13  Score=107.71  Aligned_cols=168  Identities=11%  Similarity=0.094  Sum_probs=120.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992           38 KAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (289)
Q Consensus        38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g  106 (289)
                      .-|..+...|++++|+.+|.+++++.....          ..........++|.+|... ++++|+.+|++++++.+.. 
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-   87 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN-   87 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence            334555566777777777777776633210          0011122223389999777 9999999999999997754 


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhh
Q 022992          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ--YHKSIEIYEEIARQSLN  184 (289)
Q Consensus       107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~  184 (289)
                           ..++.++|.++...|++++|+.+|++++++.+..      ..++.++|.++...|+  ...+...|.++..    
T Consensus        88 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~----  152 (208)
T 3urz_A           88 -----VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS----  152 (208)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C----
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence                 4589999999999999999999999999987654      3588999999987764  4556666766541    


Q ss_pred             ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .+    .....++..|+++...|++.+|...|++++++.|.
T Consensus       153 ~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          153 PT----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             CC----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            10    11224566788988899999999999999998775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.50  E-value=2.1e-12  Score=110.84  Aligned_cols=198  Identities=11%  Similarity=0.025  Sum_probs=146.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      .+...-...+...|..+...|++++|..+|.+++.....      ...++..+|.++... ++++|+.++++++.+.+..
T Consensus        15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~   88 (327)
T 3cv0_A           15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   88 (327)
T ss_dssp             SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Confidence            333333444556677888999999999999999987432      245777889998777 9999999999999885433


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc------------------------------------
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT------------------------------------  149 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~------------------------------------  149 (289)
                            ..++..+|.++...|++++|+.+|++++...+......                                    
T Consensus        89 ------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  162 (327)
T 3cv0_A           89 ------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH  162 (327)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence                  45788889999988999999999998887644322110                                    


Q ss_pred             -------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          150 -------SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       150 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                             ....++..+|.++...|++++|+.+|++++.....       ....+..+|.++...|++++|...|++++.+
T Consensus       163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-------DAQLWNKLGATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                   11356788999999999999999999999754321       2245677888999999999999999999887


Q ss_pred             CCCCCCchHHHHHHHHHHHH-cccCHH
Q 022992          223 DPTFSGTREYRLLSDIAASM-DEEDIA  248 (289)
Q Consensus       223 ~~~~~~~~e~~~l~~l~~a~-~~~d~~  248 (289)
                      .|...     .....++..+ ..|+.+
T Consensus       236 ~~~~~-----~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          236 NPGYV-----RVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             CTTCH-----HHHHHHHHHHHHTTCHH
T ss_pred             CCCCH-----HHHHHHHHHHHHhccHH
Confidence            76532     2344566655 366643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=125.37  Aligned_cols=197  Identities=11%  Similarity=0.013  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      +..|...|.++...|++++|+++|.+|+++.+....   ....+.+|.++|.+|... ++++|+.++++++.+.+....+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            446777899999999999999999999999876542   234577899999999877 9999999999999999886543


Q ss_pred             H--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHH
Q 022992          109 S--MAARYYKEIAELYESE--HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA---ELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       109 ~--~~a~~l~~la~~~~~~--g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~  181 (289)
                      .  ..+.++.++|..+...  +++++|+.+|++|+++.+...      .++..++.++.   ..+++++|++.|++++..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~------~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP------EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence            2  3466777888776654  579999999999999876432      45566666644   456778899999888754


Q ss_pred             HhhccccccchhhHHHHHHHHH----HccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCH
Q 022992          182 SLNNNLLKYGVKGHLLNAGICQ----LCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDI  247 (289)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~----l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~  247 (289)
                      .+.+       ...+..++.++    ...|++..|...+++++.+.|...     .....++..+. .|+.
T Consensus       205 ~p~~-------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~~~  263 (472)
T 4g1t_A          205 NPDN-------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT-----DVLRSAAKFYRRKDEP  263 (472)
T ss_dssp             CSSC-------HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHTTCH
T ss_pred             CCcc-------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-----HHHHHHHHHHHHcCch
Confidence            3221       11223333332    334667778888888877766543     33455565553 4443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.46  E-value=2.7e-11  Score=101.43  Aligned_cols=211  Identities=6%  Similarity=-0.114  Sum_probs=140.9

Q ss_pred             HhhHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Q 022992            5 IARAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK   84 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~   84 (289)
                      .++|...+.++-+...      .+...-...+...|.++...|++++|..+|.++++....      ...++..+|.+|.
T Consensus        21 ~~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~   88 (275)
T 1xnf_A           21 QEVILARMEQILASRA------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLT   88 (275)
T ss_dssp             HHHHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHH
Confidence            5566666665544322      123344566777889999999999999999999987432      2457888999997


Q ss_pred             cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 022992           85 KT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA  163 (289)
Q Consensus        85 ~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~  163 (289)
                      .. ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+...      .....+ .+..
T Consensus        89 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~~-~~~~  155 (275)
T 1xnf_A           89 QAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP------FRSLWL-YLAE  155 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHH-HHHH
T ss_pred             HccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh------HHHHHH-HHHH
Confidence            77 9999999999999987654      35899999999999999999999999999866432      122222 3446


Q ss_pred             HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc
Q 022992          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD  243 (289)
Q Consensus       164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~  243 (289)
                      ..|++++|+..|++++......   .     .....+.+++..++...|...+.+++...+... .........++..+.
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~  226 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKE---Q-----WGWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYL  226 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCC---S-----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcc---h-----HHHHHHHHHHHhcCHHHHHHHHHHHhccccccc-ccccHHHHHHHHHHH
Confidence            6799999999998886432111   0     112244455566666666666666554322210 011234445555443


Q ss_pred             -ccCHHH
Q 022992          244 -EEDIAK  249 (289)
Q Consensus       244 -~~d~~~  249 (289)
                       .|+.+.
T Consensus       227 ~~g~~~~  233 (275)
T 1xnf_A          227 SLGDLDS  233 (275)
T ss_dssp             HTTCHHH
T ss_pred             HcCCHHH
Confidence             555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=1.9e-12  Score=97.10  Aligned_cols=111  Identities=13%  Similarity=0.078  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL  187 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  187 (289)
                      ....|.++.++|..+...|++++|+.+|++|+++.+..      ..++.++|.++..+|+|++|++.|++++........
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            34678889999999999999999999999999987653      368999999999999999999999999866544332


Q ss_pred             cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          188 LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      ........+.++|.++...|++..|...|++++.+.|
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            2223345678899999999999999999999988654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.45  E-value=9.2e-13  Score=126.15  Aligned_cols=200  Identities=12%  Similarity=0.042  Sum_probs=153.5

Q ss_pred             HHcCCHHHHHHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           44 KLAKSWDKAGATYVKLANCH-LKL-ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAE  120 (289)
Q Consensus        44 ~~~g~~~~A~~~~~~a~~~~-~~~-~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~  120 (289)
                      ...|++++|++.|.++++.. ... ......+.++..+|.++... ++++|+..|++++++.+..      +.++.++|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHH
Confidence            46789999999999998211 100 01112345778889888766 9999999999999987654      458999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (289)
Q Consensus       121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  200 (289)
                      ++...|++++|+..|++|+++.+...      .++.++|.++..+|++++ +..|++++.....       ....++++|
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-------~~~a~~~lg  541 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGEL------APKLALAATAELAGNTDE-HKFYQTVWSTNDG-------VISAAFGLA  541 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-------CHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-------hHHHHHHHH
Confidence            99999999999999999999977643      578999999999999999 9999999854322       234678899


Q ss_pred             HHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcc-cC-----HHHHHHHHHhccccCCCchhHH
Q 022992          201 ICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDE-ED-----IAKFTDVVKEFDSMTPLDPWKT  268 (289)
Q Consensus       201 ~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~-~d-----~~~~~~al~~~~~~~~~d~~~~  268 (289)
                      .++...|++++|...|++++++.|.+.     .....++.++.. ++     .+.+++|+..+..+...+|-..
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPTSRHFT-----TARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTTSTTHH-----HHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHcCCHHHHHHHHHhhcccCcccH-----HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            999999999999999999988776643     234455665532 22     5889999999888865554433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.43  E-value=2.1e-13  Score=105.43  Aligned_cols=126  Identities=11%  Similarity=0.079  Sum_probs=103.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      .|.+++..|++++|+..+.+++....      .....+..+|.+|.+. ++++|+++|++++++.+..      +.++..
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~   70 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRF   70 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence            46778888999999999998876543      3455677899999777 9999999999999997654      459999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHH
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIY-EEIARQS  182 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~a~~~~  182 (289)
                      +|.++...|++++|+.+|++|+++.+..      ..++.++|.++...|++++|++.| ++++...
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence            9999999999999999999999987653      368999999999999999988865 8887554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.42  E-value=1.9e-12  Score=97.13  Aligned_cols=106  Identities=14%  Similarity=0.184  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-
Q 022992           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-  147 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-  147 (289)
                      .+.|.++.++|.++.+. ++++|+.+|++|+++.+..      +.++.++|.++..+|++++|+.+|++|+++.+.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            46678889999998776 9999999999999986643      458999999999999999999999999999887543 


Q ss_pred             cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ....+.++.++|.++..+|++++|+++|++++..
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3456678999999999999999999999999743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.41  E-value=1.3e-12  Score=100.97  Aligned_cols=131  Identities=10%  Similarity=0.035  Sum_probs=104.2

Q ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      .+|.+++.. ++++|+..+++++...+.      ....+..+|.+|...|++++|+.+|++++++.+..      ..++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence            367788776 999999999999776554      44578899999999999999999999999987653      36899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHH-HHHHhhcCCCCC
Q 022992          157 KVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNA-LERYQDMDPTFS  227 (289)
Q Consensus       157 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~-~~~~~~~~~~~~  227 (289)
                      .+|.++..+|++++|+..|++++...+.       ....++++|.++...|+..+|... ++++++++|..+
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            9999999999999999999999855322       234678899999999988766655 589999988753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=1.8e-11  Score=102.52  Aligned_cols=159  Identities=11%  Similarity=-0.016  Sum_probs=125.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .|++++|+..|.++++..  ..++...+.++..+|.++... ++++|+.+|++++.+.+..      ..++..+|.++..
T Consensus        18 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~   89 (275)
T 1xnf_A           18 TLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQ   89 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHH
Confidence            467788888888887752  134556688899999999777 9999999999999986542      4589999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          125 EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      .|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++......+       ......+.+ .
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~-~  155 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-------FRSLWLYLA-E  155 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHH-H
T ss_pred             ccCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-------HHHHHHHHH-H
Confidence            999999999999999986653      25789999999999999999999999985432221       112222333 5


Q ss_pred             ccCCHHHHHHHHHHHhhcCCCC
Q 022992          205 CKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ..|++..|...+.+.....+..
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~  177 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKE  177 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCC
T ss_pred             HhcCHHHHHHHHHHHHhcCCcc
Confidence            5699999999999888766553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=118.11  Aligned_cols=155  Identities=10%  Similarity=0.073  Sum_probs=116.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           65 KLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        65 ~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      ...+....+..|+.+|.++... ++++|+++|++|+++.+....   ....+.++.++|.+|..+|++++|+.+|+++++
T Consensus        43 ~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           43 EFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             TSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3445555678899999999766 999999999999999886543   234577899999999999999999999999999


Q ss_pred             HHhccCcc--chHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH---ccCCHHHHH
Q 022992          141 MFQNEEVT--TSANQCKQKVAQYAAEL--EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL---CKGDVVAIT  213 (289)
Q Consensus       141 ~~~~~~~~--~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l---~~gd~~~A~  213 (289)
                      +.+....+  ...+.++..+|.++...  ++|++|+.+|++++...+.+       ...+...+.++.   ..++...|.
T Consensus       123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-------~~~~~~~~~~~~~l~~~~~~~~al  195 (472)
T 4g1t_A          123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-------PEFTSGLAIASYRLDNWPPSQNAI  195 (472)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHSCCCCCTH
T ss_pred             HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCchHHHHHH
Confidence            98875433  23456788888877765  57999999999998654322       223344444433   346677889


Q ss_pred             HHHHHHhhcCCCC
Q 022992          214 NALERYQDMDPTF  226 (289)
Q Consensus       214 ~~~~~~~~~~~~~  226 (289)
                      ..+++++++.|..
T Consensus       196 ~~~~~al~l~p~~  208 (472)
T 4g1t_A          196 DPLRQAIRLNPDN  208 (472)
T ss_dssp             HHHHHHHHHCSSC
T ss_pred             HHHHHHhhcCCcc
Confidence            9999999887764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=9.6e-12  Score=97.46  Aligned_cols=132  Identities=8%  Similarity=0.016  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...+.++...|++++|..++.++++....      ...++..+|.++... ++++|+.++++++...+..      ..
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~  111 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FN  111 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HH
Confidence            3445578899999999999999999987432      145778888888766 9999999999999886532      45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      ++..+|.++...|++++|+.+|+++++..+..      ..++..+|.++...|++++|+.+|++++.....
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            88999999999999999999999999886432      367899999999999999999999999855433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.41  E-value=8.1e-12  Score=114.57  Aligned_cols=195  Identities=16%  Similarity=0.115  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHccC-CH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992           53 GATYVKLANCHLKL-ESKHEAAQAYVDAAHCYKKT-SS-NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE  129 (289)
Q Consensus        53 ~~~~~~a~~~~~~~-~~~~~aa~~~~~~a~~~~~~-~~-~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~  129 (289)
                      ...+.+++..+... ......+..+..+|.++... ++ ++|+.+|++|+.+.+..      +.++..+|.++...|+++
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~  154 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVT  154 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHH
Confidence            33444444444321 22224577889999999877 99 99999999999986643      458999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992          130 QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---------EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (289)
Q Consensus       130 ~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  200 (289)
                      +|+.+|++|+++.+.       ..++.++|.++..+         |++++|+..|++++.....       ....+.++|
T Consensus       155 ~A~~~~~~al~~~p~-------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg  220 (474)
T 4abn_A          155 SAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-------DGRSWYILG  220 (474)
T ss_dssp             HHHHHHHHHHTTCCC-------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC-------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-------CHHHHHHHH
Confidence            999999999988532       36899999999999         9999999999999855322       234577889


Q ss_pred             HHHHcc--------CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHH
Q 022992          201 ICQLCK--------GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLL  271 (289)
Q Consensus       201 ~~~l~~--------gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~  271 (289)
                      .++...        |++++|...|++++.+.|...  ........++.++. .|+.+   +|+..|.....++|.+...+
T Consensus       221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS--SNPDLHLNRATLHKYEESYG---EALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG--GCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Confidence            998888        999999999999999876311  12345666777664 66643   34444444433444444333


Q ss_pred             H
Q 022992          272 L  272 (289)
Q Consensus       272 ~  272 (289)
                      .
T Consensus       296 ~  296 (474)
T 4abn_A          296 Q  296 (474)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.40  E-value=3.1e-11  Score=120.16  Aligned_cols=229  Identities=11%  Similarity=0.151  Sum_probs=158.9

Q ss_pred             HhhHHHHHHHHHHhhccC-CCC-C-CCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992            5 IARAEEFEKKAEKKLNGW-GLF-G-SKYEDAADLFDKA---------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA   72 (289)
Q Consensus         5 ~~~a~~~~~~A~~~~k~~-~~~-~-~~~~~A~~~~~~A---------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a   72 (289)
                      .+||..++++++...+.. .+. . ++|++|.+++.++         |.++...|++++|+++|.+|       ++    
T Consensus      1065 yEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD---- 1133 (1630)
T 1xi4_A         1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD---- 1133 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC----
Confidence            566666666665333311 112 2 6777777777554         67777788888888888775       22    


Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHH-------------HHhcCCHHHHHH--------HHHHHHHHHHhcCCHHH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNM-------------FCDIGRLSMAAR--------YYKEIAELYESEHNIEQ  130 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~-------------~~~~g~~~~~a~--------~l~~la~~~~~~g~~~~  130 (289)
                      ...|.+.+.++.+. ++++|+++|..|...             |.+.++......        .+.++|..+...|++++
T Consensus      1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A         1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence            34566778888776 889999999887633             233344433222        35579999999999999


Q ss_pred             HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------hccccccc----------
Q 022992          131 TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL---------NNNLLKYG----------  191 (289)
Q Consensus       131 A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---------~~~~~~~~----------  191 (289)
                      |+.+|.+|              ..+.+++.++..+|+|++|+++++++.....         +.+  .+.          
T Consensus      1214 A~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~--Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A         1214 AKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIV 1277 (1630)
T ss_pred             HHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh--HHHHHHHHHHhhh
Confidence            99999986              2578899999999999999999998842211         000  000          


Q ss_pred             -hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992          192 -VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP  265 (289)
Q Consensus       192 -~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~  265 (289)
                       ..+.+..++..|...|.+++|...++.++.+.+.+.     .+...|+.++..-.++.+.++++.|.+...+.|
T Consensus      1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~-----gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHM-----GMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh-----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence             112233455667788999999999999988776543     445667777766678888888888888877766

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.38  E-value=2.6e-11  Score=111.32  Aligned_cols=144  Identities=10%  Similarity=0.014  Sum_probs=125.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHH
Q 022992           41 NSFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYY  115 (289)
Q Consensus        41 ~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l  115 (289)
                      ..++.+|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.+++++++++.+.  .+....+..+
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4567899999999999999999874 55 3457899999999999877 9999999999999999875  4677899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      +++|.+|..+|++++|+.+|++|+++.+.. | +.+...++...++.++..++.|++|...|.++......
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~  467 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN  467 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998864 3 33556678899999999999999999999998654433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.37  E-value=1.8e-11  Score=91.60  Aligned_cols=105  Identities=11%  Similarity=0.129  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ..+..+.+.|..+...|++++|+.+|++|+++.+..      ..++.++|.++..+|++++|+..|++++....      
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------   78 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDS------   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------
Confidence            456678888999888899999999999999886543      35788899999999999999999999875422      


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                       .....++++|.++..+|++++|...|+++++++|...
T Consensus        79 -~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           79 -KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             -hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence             1234577888999999999999999999998887753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=2e-11  Score=116.88  Aligned_cols=158  Identities=13%  Similarity=0.005  Sum_probs=122.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |.++...|++++|+..|.++++.....      ..++..+|.+|... ++++|+.+|++|+.+.+..-      .++.++
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~l  507 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGWR------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL------APKLAL  507 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHH
Confidence            557888999999999999999885432      56888999999776 99999999999999987654      488999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLN  198 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  198 (289)
                      |.++...|++++ +.+|++|+++.+..      ..++.++|.++..+|++++|+..|++++....       ....++.+
T Consensus       508 g~~~~~~g~~~~-~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------~~~~a~~~  573 (681)
T 2pzi_A          508 AATAELAGNTDE-HKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-------HFTTARLT  573 (681)
T ss_dssp             HHHHHHHTCCCT-TCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-------THHHHHHH
T ss_pred             HHHHHHcCChHH-HHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-------ccHHHHHH
Confidence            999999999999 99999999986653      25789999999999999999999999863211       12345677


Q ss_pred             HHHHHHccCC-----HHHHHHHHHHHhhcC
Q 022992          199 AGICQLCKGD-----VVAITNALERYQDMD  223 (289)
Q Consensus       199 ~~~~~l~~gd-----~~~A~~~~~~~~~~~  223 (289)
                      .+.+++..++     .....++...+..+.
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          574 SAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            7888766554     344444454444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.35  E-value=9.1e-11  Score=100.67  Aligned_cols=201  Identities=13%  Similarity=0.101  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...+..+...+++++|+..+++.+....   ++ .....+..+|.++... ++++|++++++       .+    -..
T Consensus        67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~---~P-~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~----~~~  131 (291)
T 3mkr_A           67 AVRMFAEYLASHSRRDAIVAELDREMSRSV---DV-TNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD----SLE  131 (291)
T ss_dssp             HHHHHHHHHHCSTTHHHHHHHHHHHHHSCC---CC-SCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC----SHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhccc---CC-CCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC----CHH
Confidence            344456666677778888877777654310   11 1134567777887665 88888888887       12    234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHH----HHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA----QYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ++..+|.++..+|++++|+..|++++++.+..        ...+++    .++...|++++|+.+|++++...+.     
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-----  198 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDA--------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-----  198 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc--------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-----
Confidence            78889999999999999999999999885431        122333    3334558999999999999854321     


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCH-HHHHHHHHhccccCCCchhH
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDI-AKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~-~~~~~al~~~~~~~~~d~~~  267 (289)
                        ....+.++|.++...|++++|...|++++.+.|...     .++.+++..+ ..|+. +...+.++....+.+-+|+.
T Consensus       199 --~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          199 --TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence              234567789999999999999999999999887653     3456666554 35554 33445555555556556555


Q ss_pred             HHH
Q 022992          268 TTL  270 (289)
Q Consensus       268 ~~~  270 (289)
                      ..+
T Consensus       272 ~d~  274 (291)
T 3mkr_A          272 KEY  274 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=6.4e-11  Score=97.38  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992            8 AEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA-----------------ANSFKLAKSWDKAGATYVKLANCHLKLESKH   70 (289)
Q Consensus         8 a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A-----------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   70 (289)
                      +..++..|...++.     |+|++|+..|.++                 |.+|...|++++|+..|.++++.+.....  
T Consensus         4 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~--   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQD-----GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--   76 (225)
T ss_dssp             HHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--
T ss_pred             HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--
Confidence            34455555555542     4666666666665                 56788899999999999999998765433  


Q ss_pred             HHHHHHHHHHHHHc------------------cC-CHHHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHH
Q 022992           71 EAAQAYVDAAHCYK------------------KT-SSNEAISCLEQAVNMFCDIGRLSMA-----------ARYYKEIAE  120 (289)
Q Consensus        71 ~aa~~~~~~a~~~~------------------~~-~~~~A~~~~~~A~~~~~~~g~~~~~-----------a~~l~~la~  120 (289)
                       ...++..+|.++.                  .. ++++|+.+|++++..++.......+           +.....+|.
T Consensus        77 -~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~  155 (225)
T 2yhc_A           77 -IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE  155 (225)
T ss_dssp             -HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2334555565553                  23 7899999999999998876654321           223357889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          121 LYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       121 ~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ++...|++++|+..|+++++.++...   ....++..+|.++..+|++++|++.++++..
T Consensus       156 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          156 YYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            99999999999999999999987642   3457899999999999999999999998763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.34  E-value=5.2e-11  Score=102.22  Aligned_cols=192  Identities=14%  Similarity=0.121  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHH
Q 022992           27 SKYEDAADLFDK----------------AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSN   89 (289)
Q Consensus        27 ~~~~~A~~~~~~----------------A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~   89 (289)
                      +++++|++.+++                .|.++...|++++|+.++.+       -++    ..++..+|.++... +++
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~----~~~~~~l~~~~~~~g~~~  147 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDS----LECMAMTVQILLKLDRLD  147 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCS----HHHHHHHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCC----HHHHHHHHHHHHHCCCHH
Confidence            456666665554                35678889999999999887       122    34777889998776 999


Q ss_pred             HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992           90 EAISCLEQAVNMFCDIGRL-SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (289)
Q Consensus        90 ~A~~~~~~A~~~~~~~g~~-~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (289)
                      +|+.++++++...+.  +. ...+.++.   .++...|++++|+.+|+++++.++..      ..+++.+|.++..+|++
T Consensus       148 ~A~~~l~~~~~~~p~--~~~~~l~~a~~---~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          148 LARKELKKMQDQDED--ATLTQLATAWV---SLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHHHHHHHHHHHCTT--CHHHHHHHHHH---HHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhCcC--cHHHHHHHHHH---HHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCH
Confidence            999999999988532  21 11122222   23334589999999999999986542      35889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHH-HHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCH
Q 022992          169 HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVA-ITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDI  247 (289)
Q Consensus       169 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~-A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~  247 (289)
                      ++|+..|++++...+.       ....+.++|.++...|+..+ +...+++++++.|..+      .+..+..     -.
T Consensus       217 ~eA~~~l~~al~~~p~-------~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~------~~~d~~~-----~~  278 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSG-------HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP------FIKEYRA-----KE  278 (291)
T ss_dssp             HHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH------HHHHHHH-----HH
T ss_pred             HHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh------HHHHHHH-----HH
Confidence            9999999999855322       23457788888888998765 6788999999988864      1222211     13


Q ss_pred             HHHHHHHHhcc
Q 022992          248 AKFTDVVKEFD  258 (289)
Q Consensus       248 ~~~~~al~~~~  258 (289)
                      ..|.+++..|.
T Consensus       279 ~~fd~~~~~~~  289 (291)
T 3mkr_A          279 NDFDRLVLQYA  289 (291)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHcC
Confidence            56777776663

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.32  E-value=1.3e-11  Score=115.54  Aligned_cols=155  Identities=5%  Similarity=-0.063  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~  125 (289)
                      |++++|..+|.++++....      .+.++..+|.++... ++++|+++|++++++.+..      ..++.++|.++...
T Consensus         3 g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~   70 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ   70 (568)
T ss_dssp             ------------------C------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC
Confidence            4556666666666555332      134556666666544 6666666666666654432      34566666666666


Q ss_pred             CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc
Q 022992          126 HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC  205 (289)
Q Consensus       126 g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~  205 (289)
                      |++++|+.+|++++++.+..      ..++.++|.++..+|++++|+++|++++.....       ....+.+++.++..
T Consensus        71 g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           71 QRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-------EPYITAQLLNWRRR  137 (568)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHH
Confidence            66666666666666654432      245666666666666666666666666533211       12234555666666


Q ss_pred             c---CCHHHHHHHHHHHhhcCCCC
Q 022992          206 K---GDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       206 ~---gd~~~A~~~~~~~~~~~~~~  226 (289)
                      .   |+.++|...++++++..|..
T Consensus       138 ~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          138 LCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             hhccccHHHHHHHHHHHHhcCCcc
Confidence            6   66666666666666665553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.32  E-value=2.9e-11  Score=90.55  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      ..+..+.+.|..|.+. ++++|+++|++|+++.+..      +.++.++|.++..+|++++|+..|++|+++.+..    
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----   80 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----
Confidence            4577888889988766 9999999999999886643      4589999999999999999999999999986543    


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                        ..++..+|.++..+|++++|++.|++++...
T Consensus        81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           81 --IKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence              3578999999999999999999999998654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.31  E-value=1.4e-10  Score=94.73  Aligned_cols=176  Identities=14%  Similarity=0.024  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT   86 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~   86 (289)
                      +|..++++|.+.  |      +    ...+...|.+|...+++++|+.+|.++++.    |+    +.++.++|.+|...
T Consensus         4 eA~~~~~~aa~~--g------~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~   63 (212)
T 3rjv_A            4 EPGSQYQQQAEA--G------D----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRN   63 (212)
T ss_dssp             CTTHHHHHHHHT--T------C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSS
T ss_pred             hHHHHHHHHHHC--C------C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcC
Confidence            566666666543  2      3    233556788888899999999999999864    44    56788999999776


Q ss_pred             ----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992           87 ----SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (289)
Q Consensus        87 ----~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l  158 (289)
                          ++++|+.+|++|++    .|+    +.++.++|.+|..    .+++++|+.+|++|++.-.    ......++.+|
T Consensus        64 g~~~~~~~A~~~~~~A~~----~g~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~L  131 (212)
T 3rjv_A           64 PQQADYPQARQLAEKAVE----AGS----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLL  131 (212)
T ss_dssp             TTSCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHH
Confidence                89999999999954    343    5588999999987    7899999999999987532    11235688999


Q ss_pred             HHHHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc-C-----CHHHHHHHHHHHhhc
Q 022992          159 AQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK-G-----DVVAITNALERYQDM  222 (289)
Q Consensus       159 ~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g-----d~~~A~~~~~~~~~~  222 (289)
                      |.+|..    .+++++|+.+|+++... .       +....++++|.+|... |     |+..|...|+++.+.
T Consensus       132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~-------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          132 GLIYASGVHGPEDDVKASEYFKGSSSL-S-------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHTSSSSCCHHHHHHHHHHHHHT-S-------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHc-C-------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            999998    88999999999999743 1       1223567888888642 3     899999999998775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.31  E-value=5.5e-11  Score=96.18  Aligned_cols=139  Identities=14%  Similarity=0.065  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+.+.|.++... ++++|+.+|++++.     .    .+.++.++|.++...|++++|+.+|++++.+.+..      
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------   70 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------   70 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence            44566777777665 99999999999851     1    24699999999999999999999999999986532      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc---------cccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNL---------LKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      ..++.++|.++..+|++++|+..|++++.....++.         ........++++|.++...|++..|...|++++++
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            367899999999999999999999999854433220         11123356788999999999999999999999998


Q ss_pred             CCCC
Q 022992          223 DPTF  226 (289)
Q Consensus       223 ~~~~  226 (289)
                      .|..
T Consensus       151 ~p~~  154 (213)
T 1hh8_A          151 KSEP  154 (213)
T ss_dssp             CCSG
T ss_pred             Cccc
Confidence            8764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.30  E-value=8.2e-10  Score=101.26  Aligned_cols=163  Identities=15%  Similarity=0.128  Sum_probs=109.7

Q ss_pred             CCCHHHHHHHHHHH------------HHHHHH----cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc----
Q 022992           26 GSKYEDAADLFDKA------------ANSFKL----AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK----   85 (289)
Q Consensus        26 ~~~~~~A~~~~~~A------------~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~----   85 (289)
                      .+|+++|..+|.+|            |.+|..    .+++++|..+|.++++.    |+    ..++..+|.+|..    
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~  127 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGV  127 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence            37888888888876            345666    77888888888888753    33    3456677777765    


Q ss_pred             C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992           86 T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (289)
Q Consensus        86 ~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~  160 (289)
                      . ++++|+.+|++|++.    |+    +.++.++|.+|..    .+++++|+.+|++|++.    ++    ..++..+|.
T Consensus       128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~  191 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VWSCNQLGY  191 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHH
Confidence            3 788888888887653    33    4567777877776    57788888888887764    21    246677777


Q ss_pred             HHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhh
Q 022992          161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQD  221 (289)
Q Consensus       161 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~  221 (289)
                      +|..    .+++++|+.+|+++...         +....++.+|.++..    .+|+..|...|+++.+
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  251 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATS---------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE  251 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            7776    67778888877777521         112234555666553    5666777777666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.29  E-value=8.6e-11  Score=91.02  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~------g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .+..+.+.|..+... ++++|+.+|++|+++.+..      .....-+.+|.++|.++..+|++++|+.+|.+|+++|..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            455667777777665 8999999999999988762      111134559999999999999999999999999999443


Q ss_pred             cCcc-chHHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 022992          145 EEVT-TSANQCK----QKVAQYAAELEQYHKSIEIYEEIARQSLNNN  186 (289)
Q Consensus       145 ~~~~-~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  186 (289)
                      .+.. +.-..++    .+.|.++..+|++++|+..|++++...+++.
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            2211 2344567    9999999999999999999999997765553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.29  E-value=2.6e-10  Score=104.58  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=100.0

Q ss_pred             HHHHHHHHHcc----C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhc
Q 022992           75 AYVDAAHCYKK----T-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        75 ~~~~~a~~~~~----~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-----g~~~~A~~~y~~A~~~~~~  144 (289)
                      ++..+|.+|..    . ++++|+.+|++|++.    |+    ..++..+|.++...     +++++|+.+|++|++.   
T Consensus       257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---  325 (490)
T 2xm6_A          257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GN----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---  325 (490)
T ss_dssp             HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TC----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence            44455555544    2 666666666666532    32    23666778887776     7888888888888764   


Q ss_pred             cCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHH
Q 022992          145 EEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALE  217 (289)
Q Consensus       145 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~  217 (289)
                       +.    ..++.++|.++...|   ++++|+.+|+++...         +....++++|.++..    .+|+.+|...|+
T Consensus       326 -~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  391 (490)
T 2xm6_A          326 -GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR  391 (490)
T ss_dssp             -TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             -CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence             21    246788888887755   888888888888632         123456778888877    789999999999


Q ss_pred             HHhhcCCCCCCchHHHHHHHHHHHHcccC--HHHHHHHHHhccccCCCc
Q 022992          218 RYQDMDPTFSGTREYRLLSDIAASMDEED--IAKFTDVVKEFDSMTPLD  264 (289)
Q Consensus       218 ~~~~~~~~~~~~~e~~~l~~l~~a~~~~d--~~~~~~al~~~~~~~~~d  264 (289)
                      ++.+..     ..  .....|+..+..|.  ...+.+|...|......+
T Consensus       392 ~A~~~~-----~~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          392 KAAEQG-----LS--AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHTT-----CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhCC-----CH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            987742     22  34556777664321  233344444444443333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=3.2e-11  Score=97.61  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      .++...| ..|..+...|++++|+..|.+++.      .   .+.++.++|.+|... ++++|+.+|++++.+.+..   
T Consensus         4 ~~~~~~~-~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---   70 (213)
T 1hh8_A            4 VEAISLW-NEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---   70 (213)
T ss_dssp             HHHHHHH-HHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHH-HHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence            3445444 456677789999999999998841      1   246889999999777 9999999999999986532   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE----------VTTSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                         ..++.++|.++...|++++|+.+|++++++.+...          .......++.++|.++..+|++++|+.+|+++
T Consensus        71 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           71 ---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence               46899999999999999999999999999887655          44456688999999999999999999999999


Q ss_pred             HH
Q 022992          179 AR  180 (289)
Q Consensus       179 ~~  180 (289)
                      +.
T Consensus       148 l~  149 (213)
T 1hh8_A          148 TS  149 (213)
T ss_dssp             HT
T ss_pred             HH
Confidence            74

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.27  E-value=2.6e-10  Score=92.65  Aligned_cols=179  Identities=12%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR----------LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~----------~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+...|..+... ++++|+.+|++++.+.+....          .........++|.++...|++++|+.+|++++++.+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   85 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP   85 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            444455555444 999999999999988764322          011122223399999999999999999999999876


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC--HHHHHHHHHHHhh
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD--VVAITNALERYQD  221 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd--~~~A~~~~~~~~~  221 (289)
                      ..      ..++..+|.++..+|++++|+.+|++++...+.       ....++++|.++...|+  ...+...+.....
T Consensus        86 ~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~  152 (208)
T 3urz_A           86 NN------VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS  152 (208)
T ss_dssp             TC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred             CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC
Confidence            54      368899999999999999999999999865322       23457788888766654  3344444444321


Q ss_pred             cCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHH--HHHHHH
Q 022992          222 MDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT--TLLLRV  274 (289)
Q Consensus       222 ~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~--~~~~~~  274 (289)
                            ..+.......++.++.  ....+.+|+..|+....++|...  ..+.+|
T Consensus       153 ------~~~~~~a~~~~g~~~~--~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          153 ------PTKMQYARYRDGLSKL--FTTRYEKARNSLQKVILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             ------CCHHHHHHHHHHHHHH--HHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             ------CCchhHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                  1222112222333322  13456677777777777766542  344444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.26  E-value=1.1e-10  Score=90.43  Aligned_cols=103  Identities=16%  Similarity=0.102  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      .-...+..+|.++...|++++|+.+|++++.+.+..      ..++.++|.++..+|+|++|+..|++++...+.+    
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~----  103 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND----  103 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC----
Confidence            445678888999988899999999999999886643      3578889999999999999999999998554222    


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                         ...++++|.|+...|++++|..+|++++++.|.
T Consensus       104 ---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          104 ---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             ---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence               245778899999999999999999999887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.25  E-value=5.9e-10  Score=86.28  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~  107 (289)
                      .+...|+.+...|+|++|+.+|.+|+++....      .....-+.+|.+.|.++... ++++|+.+|++|+++|-+.+.
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34455677778889999999999999887652      11223456999999999888 999999999999999554432


Q ss_pred             HH-HHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992          108 LS-MAARYY----KEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (289)
Q Consensus       108 ~~-~~a~~l----~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~  147 (289)
                      .. .-+.+|    .+.|.++..+|++++|+..|++|+++.+++..
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            21 345567    99999999999999999999999999987653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.24  E-value=1.7e-10  Score=85.11  Aligned_cols=131  Identities=17%  Similarity=0.276  Sum_probs=86.4

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      ++..+|.++... ++++|+.++++++...+..      ..++..+|.++...|++++|+.+|++++...+..      ..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence            445566666444 7777777777776653321      3466677777777788888888888877764332      24


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      ++..+|.++...|++++|+.++++++.....       ....+..++.++...|++.+|...+++++...|
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            5677777888888888888888777643211       123345567777777888888888777766554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.24  E-value=5.5e-11  Score=92.05  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      ......+..+|.++... ++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++|+.+.+...  
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~--  104 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY--  104 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--
Confidence            34466778888888766 9999999999999997654      34899999999999999999999999999987643  


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                          .++.++|.++..+|++++|+..|++++...
T Consensus       105 ----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          105 ----TPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                578999999999999999999999998543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.23  E-value=2.1e-10  Score=88.47  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      ..+..+..+|.++... ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+..    
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----   80 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Confidence            3455666666666554 7777777777777664432      4467777777777777777777777777765432    


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                        ..++..+|.++..+|++++|+.+|++++.....+     .........+..+...|++.+|...+.....
T Consensus        81 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           81 --IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence              2466777777777777777777777776432211     1111112233335556667777666665543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.22  E-value=2.3e-10  Score=93.34  Aligned_cols=189  Identities=12%  Similarity=0.069  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--
Q 022992           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH--  126 (289)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g--  126 (289)
                      ++|...|.++++.    |+    +.++..+|.+|... ++++|+.+|++|++.    |+    +.++.++|.+|.. +  
T Consensus         3 ~eA~~~~~~aa~~----g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~-~g~   65 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIR-NPQ   65 (212)
T ss_dssp             -CTTHHHHHHHHT----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTS-STT
T ss_pred             chHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHc-CCC
Confidence            3566777887754    44    56788899999766 999999999999763    43    5688999999998 7  


Q ss_pred             --CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHH
Q 022992          127 --NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAG  200 (289)
Q Consensus       127 --~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  200 (289)
                        ++++|+.+|++|++.    +    ...++.++|.+|..    .+++++|+.+|+++....  +   .......++++|
T Consensus        66 ~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~---~~~~~~a~~~Lg  132 (212)
T 3rjv_A           66 QADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--E---SDAAVDAQMLLG  132 (212)
T ss_dssp             SCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--T---SHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--C---CcchHHHHHHHH
Confidence              999999999999753    2    23578999999987    889999999999997221  1   001245678899


Q ss_pred             HHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC----HHHHHHHHHhccccCCC-chhHHHHH
Q 022992          201 ICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED----IAKFTDVVKEFDSMTPL-DPWKTTLL  271 (289)
Q Consensus       201 ~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d----~~~~~~al~~~~~~~~~-d~~~~~~~  271 (289)
                      .+|..    .+|+.+|...|+++.++ +..   ..  ....|+..+..|.    ...+.+|+..|...... ++.-...+
T Consensus       133 ~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l  206 (212)
T 3rjv_A          133 LIYASGVHGPEDDVKASEYFKGSSSL-SRT---GY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF  206 (212)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHT-SCT---TH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHc-CCC---HH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99887    78999999999999876 222   22  3556777765331    22444555555444332 23333444


Q ss_pred             HHH
Q 022992          272 LRV  274 (289)
Q Consensus       272 ~~~  274 (289)
                      .++
T Consensus       207 ~~l  209 (212)
T 3rjv_A          207 DRI  209 (212)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.21  E-value=4.3e-10  Score=86.73  Aligned_cols=135  Identities=14%  Similarity=0.121  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      ...+..+...|.++...|++++|..+|.+++......      ..++..+|.++... ++++|+.++++++.+.+..   
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence            3445667778888899999999999999999875432      56788899999777 9999999999999986543   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                         ..++..+|.++...|++++|+.+|++++++.+...    ........+..+...|++++|+..++++..
T Consensus        81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           81 ---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence               45899999999999999999999999999866432    122335556668889999999999998853

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.20  E-value=6.5e-10  Score=102.06  Aligned_cols=138  Identities=5%  Similarity=-0.091  Sum_probs=110.1

Q ss_pred             ccCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHH
Q 022992           84 KKTSSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVA  159 (289)
Q Consensus        84 ~~~~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~  159 (289)
                      .++++++|+..|++++++..+.  .+....+.++.++|.+|..+|++++|+.+|++++++++.. | +.+..+..+++||
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4449999999999999998764  3567899999999999999999999999999999998764 3 3456778999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhcccccc-chhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          160 QYAAELEQYHKSIEIYEEIARQSLNNNLLKY-GVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      .+|..+|+|++|+.+|++++.+....-...+ .+.....+++.++..++.+.+|...|.++.+
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999754322111122 2444455667788888888888888877643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.20  E-value=2.9e-10  Score=99.57  Aligned_cols=136  Identities=13%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      -+..+...|.++...|++++|+.+|.+++.+......         ....+.++.++|.+|... ++++|+.+|++|+.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456667788999999999999999999999765431         122367899999999887 999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH-HHHHHHH
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI-EIYEEIA  179 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~  179 (289)
                      .+..      +.++.++|.++..+|++++|+.+|++|+++.+..      ..++..++.++..+|++++|. ..|+++.
T Consensus       226 ~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6643      4689999999999999999999999999987643      257899999999999999994 4677665

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=1.8e-09  Score=92.95  Aligned_cols=188  Identities=12%  Similarity=0.036  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 022992           50 DKAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN  127 (289)
Q Consensus        50 ~~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~  127 (289)
                      ++|..+|++|++ +...      -...+...|.++... ++++|+..|++++.+.+..  +.   .++.++|.++...|+
T Consensus        81 ~~A~~~~~rAl~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~---~~~~~~~~~~~~~~~  149 (308)
T 2ond_A           81 DEAANIYERAISTLLKK------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PT---LVYIQYMKFARRAEG  149 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--TH---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--cc---HHHHHHHHHHHHhcC
Confidence            677777777776 3221      245777777777655 7778888888777754321  11   267777777777777


Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHcc
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCK  206 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  206 (289)
                      +++|+..|++|+++.+..      ..++...+.+.. ..|++++|+.+|++++...   +    .....+...+..+...
T Consensus       150 ~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~~~~~~~~  216 (308)
T 2ond_A          150 IKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---G----DIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---T----TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHC
Confidence            888888888777654422      123333443322 2577888888887776432   1    1234455666666677


Q ss_pred             CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCC
Q 022992          207 GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTP  262 (289)
Q Consensus       207 gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~  262 (289)
                      |++++|+..|++++...+ +++.....+...++... ..|+.+......+......+
T Consensus       217 g~~~~A~~~~~~al~~~~-l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          217 NEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            788888888887776421 11111122333334333 35666666655555444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.19  E-value=5.2e-10  Score=82.47  Aligned_cols=129  Identities=18%  Similarity=0.287  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...+.++...|++++|...+.+++.....  +    ...+..+|.++... ++++|+.++++++...+..      ..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--c----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hH
Confidence            4556788888999999999999999876432  1    45677788888666 9999999999999875432      45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ++..+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++++..
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            78899999999999999999999999876532      357889999999999999999999998743

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=3.8e-09  Score=90.89  Aligned_cols=178  Identities=11%  Similarity=0.086  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHH
Q 022992           30 EDAADLFDKAA---------------NSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAIS   93 (289)
Q Consensus        30 ~~A~~~~~~A~---------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~   93 (289)
                      ++|...|++|.               .++...|++++|...|.+++++...  +.   ..++.+.|.++.+. ++++|+.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CT---HHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--Cc---cHHHHHHHHHHHHhcCHHHHHH
Confidence            88888888884               4566789999999999999986321  11   12788888888766 9999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992           94 CLEQAVNMFCDIGRLSMAARYYKEIAELYE-SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus        94 ~~~~A~~~~~~~g~~~~~a~~l~~la~~~~-~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      +|++|+...+..      ..++...+.+.. ..|++++|+..|++++++++..      ..++..++.++..+|++++|+
T Consensus       156 ~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~  223 (308)
T 2ond_A          156 IFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTR  223 (308)
T ss_dssp             HHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHH
Confidence            999999875432      334555555533 3699999999999999998753      367899999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .+|++++....-+   .......+...+......|+.+.|...++++++..|.-.
T Consensus       224 ~~~~~al~~~~l~---p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          224 VLFERVLTSGSLP---PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHSSSSC---GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhccCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence            9999997431001   111234566667777788999999999999999887644

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=3.3e-10  Score=84.02  Aligned_cols=103  Identities=10%  Similarity=0.100  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .+..+..+|..+...|++++|+.+|++++++.+..      ..++.++|.++..+|++++|+..|++++.....      
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence            45678888888888899999999999998876543      357888899999999999999999888754321      


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                       ....++.+|.++...|++.+|...|++++++.|.+
T Consensus        71 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  105 (126)
T 3upv_A           71 -FVRAYIRKATAQIAVKEYASALETLDAARTKDAEV  105 (126)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc
Confidence             23456778888888899999999998888877443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=6.4e-10  Score=97.31  Aligned_cols=155  Identities=12%  Similarity=0.088  Sum_probs=120.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------HHHHHHHH
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYY  115 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---------~~~~a~~l  115 (289)
                      .+++++|+.+|.++.+..      ...+..+.++|.++... ++++|+.+|++|+.+.+....         ....+.++
T Consensus       126 L~~~~~A~~~~~~a~~~~------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~  199 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH  199 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence            345566666666665543      34577888999999776 999999999999999876642         22336899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  195 (289)
                      .++|.++..+|++++|+.+|++|+++.+..      ..++.++|.++..+|++++|+..|++++.....       ....
T Consensus       200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~~a  266 (336)
T 1p5q_A          200 LNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-------NKAA  266 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-------CHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CHHH
Confidence            999999999999999999999999986643      368899999999999999999999999855322       2235


Q ss_pred             HHHHHHHHHccCCHHHHH-HHHHHH
Q 022992          196 LLNAGICQLCKGDVVAIT-NALERY  219 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~-~~~~~~  219 (289)
                      +..++.++...|+..+|. ..|.+.
T Consensus       267 ~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          267 KTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888888773 344443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.17  E-value=1.1e-10  Score=92.24  Aligned_cols=162  Identities=14%  Similarity=0.025  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      +...+..+...|++++|+..|.++++.....      ..++..+|.++... ++++|+.++++++...+   ++.    .
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~----~   75 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR------GDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNS----Y   75 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHH----H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChH----H
Confidence            4455677888999999999999999886543      56788899999776 99999999999987654   221    1


Q ss_pred             HHHHHHH-HHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          115 YKEIAEL-YESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       115 l~~la~~-~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ....+.+ +...+...+|+..|++++++.+..      ..++..+|.++...|++++|+..|++++...+.     +...
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~  144 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLG-----AQDG  144 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-----TTTT
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-----cChH
Confidence            2222322 122234456899999999987653      257899999999999999999999999743211     1122


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      ..+..++.++...|+.+.|...|++++.
T Consensus       145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          145 EVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            3567788888899999999999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.17  E-value=2.1e-10  Score=98.06  Aligned_cols=163  Identities=9%  Similarity=-0.072  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      ....|..+...|++++|...|.++++.....      ..++..+|.++... ++++|+.++++++...+   +   ....
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~~~~  187 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---TRYQ  187 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---HHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---hHHH
Confidence            3455777888999999999999999886532      45788899999776 99999999999977654   2   2234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG  194 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  194 (289)
                      ....+..+...++.++|+..|++++...+..      ..++..+|.++...|++++|+..|++++....+.     ....
T Consensus       188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-----~~~~  256 (287)
T 3qou_A          188 GLVAQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTA-----ADGQ  256 (287)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-----GGGH
T ss_pred             HHHHHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----ccch
Confidence            5566666767788999999999999987653      2578999999999999999999999998553221     2234


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          195 HLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       195 ~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      .+.+++.++...|+.+.|...|++.+.
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            567788888889998899999988754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.17  E-value=2.6e-10  Score=106.54  Aligned_cols=131  Identities=11%  Similarity=0.001  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..+...|.++...|++++|..+|.+++++...      ...++.++|.+|... ++++|+.+|++++++.+..      .
T Consensus        24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~   91 (568)
T 2vsy_A           24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------P   91 (568)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------H
Confidence            45667788999999999999999999987542      256888999999777 9999999999999986543      5


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL---EQYHKSIEIYEEIARQS  182 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~  182 (289)
                      .++.++|.++...|++++|+.+|++++++.+..      ..++..+|.++..+   |++++|++.|++++...
T Consensus        92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999986643      35789999999999   99999999999998543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=4.6e-10  Score=83.18  Aligned_cols=94  Identities=14%  Similarity=0.079  Sum_probs=44.7

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      .+.+.|..+... ++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++++++.+..      ..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~   73 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VR   73 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HH
Confidence            344444444333 4555555555554443322      2345555555555555555555555555543321      23


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ++..+|.++..+|++++|+..|++++.
T Consensus        74 ~~~~lg~~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           74 AYIRKATAQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            445555555555555555555555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.15  E-value=9.3e-11  Score=90.24  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      .....+.++|.++... ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++|+.+.+...   
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---   89 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---   89 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence            3455677788888666 9999999999999886643      45889999999999999999999999999876543   


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                         .++.++|.++..+|++++|+..|++++.....
T Consensus        90 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           90 ---RFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence               57899999999999999999999999865543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.15  E-value=5.8e-10  Score=86.56  Aligned_cols=111  Identities=8%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc------------cchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV------------TTSANQCKQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                      ...+..+...|..+...|++++|+.+|.+|+.+++....            ......++.++|.++..+|+|++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            356778999999999999999999999999998653211            23345789999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       177 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      +++...+.       ....++..|.++...|+++.|...|++++.+.|..
T Consensus        88 ~al~~~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           88 EVLKREET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhcCCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            99855321       23467889999999999999999999999987763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.14  E-value=3.9e-09  Score=105.47  Aligned_cols=164  Identities=12%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      +.|++|..+|++++......+-+-+++..+.+|.+.+.+...    ..+|.++|.++... ++++|+++|.+|       
T Consensus      1063 glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------- 1131 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------- 1131 (1630)
T ss_pred             CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------
Confidence            455566555555532222222222233334444444444433    45777889999777 999999999887       


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-------------Ccc---------chHHHHHHHHHHHHH
Q 022992          106 GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-------------EVT---------TSANQCKQKVAQYAA  163 (289)
Q Consensus       106 g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-------------~~~---------~~~~~~~~~l~~~~~  163 (289)
                      ++    ...+.++|.++.+.|++++|+++|..|....+..             +..         ... ..+.++|..+.
T Consensus      1132 dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le 1206 (1630)
T 1xi4_A         1132 DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCY 1206 (1630)
T ss_pred             CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            22    3367779999999999999999998887544221             111         111 23557999999


Q ss_pred             HhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          164 ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       164 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      ..|+|++|+.+|.++.               .|.+++.|+...|+++.|.++++++..
T Consensus      1207 ~eg~YeeA~~~Y~kA~---------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1207 DEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             hcCCHHHHHHHHHhhh---------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            9999999999998862               356788888889999999999998744

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.13  E-value=1.1e-09  Score=85.17  Aligned_cols=103  Identities=12%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .+..+..+|.++...|++++|+.+|++++++.+..      ..++.++|.++..+|+|++|+..|++++.....      
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------   77 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------   77 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Confidence            34455555555555555555555555555554322      234555555555555555555555555432211      


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                       ....++++|.++...|++..|...|++++++.|..
T Consensus        78 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           78 -YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred             -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence             12234445555555555555555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.12  E-value=8.7e-10  Score=85.57  Aligned_cols=104  Identities=11%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES------------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQA   98 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A   98 (289)
                      .+..+...|..+...|+|++|+.+|.+++.+......            ....+.++.++|.+|... ++++|+.++++|
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3455666677777777777777777777777543210            112233444444444333 444444444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 022992           99 VNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADM  141 (289)
Q Consensus        99 ~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~  141 (289)
                      +.+.+..      +.++..+|.++..+|++++|+.+|++++++
T Consensus        90 l~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           90 LKREETN------EKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4442221      224444444444444444444444444444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.12  E-value=3.8e-10  Score=101.22  Aligned_cols=198  Identities=11%  Similarity=0.032  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHH-------------HHhcCCHHHH--------HHHH
Q 022992           27 SKYEDAADLFDKAA---------NSFKLAKSWDKAGATYVKLANC-------------HLKLESKHEA--------AQAY   76 (289)
Q Consensus        27 ~~~~~A~~~~~~A~---------~~~~~~g~~~~A~~~~~~a~~~-------------~~~~~~~~~a--------a~~~   76 (289)
                      +++.+|++.|.++.         ..+...|++++|+.++..+.+.             +.++|+....        ..++
T Consensus        46 g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~  125 (449)
T 1b89_A           46 GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHI  125 (449)
T ss_dssp             ---------------------------------------------------------------CHHHHTTTTTCC-----
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHH
Confidence            67777777777662         3445567777777766665532             2222222211        1133


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      ..+|..+... .+++|+.+|.++              ..+.++|.++..+|++++|++.|++|.       +    ..++
T Consensus       126 ~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~----~~~W  180 (449)
T 1b89_A          126 QQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN-------S----TRTW  180 (449)
T ss_dssp             -----------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------C----HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC-------C----chhH
Confidence            4444444333 444444444433              134444444444455555555544440       0    1234


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL  235 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l  235 (289)
                      ..+..+++..|+++.|..+...+.         .  .+.....++.+|...|.+++|...++.++.+++.+.     .+.
T Consensus       181 k~v~~aCv~~~ef~lA~~~~l~L~---------~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~-----~~f  244 (449)
T 1b89_A          181 KEVCFACVDGKEFRLAQMCGLHIV---------V--HADELEELINYYQDRGYFEELITMLEAALGLERAHM-----GMF  244 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTTTTT---------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH-----HHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHH---------h--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH-----HHH
Confidence            444444444555555433322211         0  011223455678889999999999999998876653     456


Q ss_pred             HHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992          236 SDIAASMDEEDIAKFTDVVKEFDSMTPLDP  265 (289)
Q Consensus       236 ~~l~~a~~~~d~~~~~~al~~~~~~~~~d~  265 (289)
                      ..|+.++..=.++.+.+.++.|.+...+.|
T Consensus       245 tel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          245 TELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            677888877789999999999988777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.12  E-value=2e-09  Score=82.66  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      .....+..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|++++|+..|++++.....+    
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----   88 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE----   88 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence            456688899999999999999999999999986643      3578999999999999999999999998553222    


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                         ...++++|.++...|++++|...|++++++.|..+
T Consensus        89 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           89 ---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence               24578899999999999999999999999877643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.10  E-value=7.2e-10  Score=86.23  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      ...+..+..+|.++... ++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++++++.+..   
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---   78 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence            44567888888888766 9999999999999987653      4689999999999999999999999999987653   


Q ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 022992          149 TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSL  183 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  183 (289)
                         ..++..+|.++..+|++++|+.+|++++....
T Consensus        79 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           79 ---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence               36789999999999999999999999986543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.9e-10  Score=90.80  Aligned_cols=149  Identities=13%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      .++..|...+..     |++++|...|.++              |.++...|++++|+.+|.+++....   ++    ..
T Consensus         8 ~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~~   75 (176)
T 2r5s_A            8 QLLKQVSELLQQ-----GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----SY   75 (176)
T ss_dssp             THHHHHHHHHHT-----TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----HH
T ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----HH
Confidence            345555555542     5778887777765              6778899999999999999876643   22    11


Q ss_pred             HHHHHHHH-cc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           76 YVDAAHCY-KK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        76 ~~~~a~~~-~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      +...+.+. .. .+..+|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+....    ..
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~  145 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GE  145 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----TH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HH
Confidence            22222222 12 24456899999999987653      358999999999999999999999999988664322    24


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ++..+|.++..+|++++|+..|++++.
T Consensus       146 a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          146 VKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            788999999999999999999999874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.09  E-value=4.9e-10  Score=89.97  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 022992           31 DAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH----------EAAQAYVDAAHCYKKT-SSNEAISCLEQAV   99 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~   99 (289)
                      ..+..+...|..+...|++++|+.+|.+++.+.....++.          -...++.++|.+|... ++++|+.++++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3556677778888899999999999999998765433111          1246888889998777 9999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHH
Q 022992          100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSI  172 (289)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  172 (289)
                      .+.+..      ..++..+|.++..+|++++|+.+|++++++.+..      ..++..++.++..++++.++.
T Consensus       116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred             HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence            885532      4588899999999999999999999999886543      256788888888888887776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.07  E-value=3.3e-09  Score=80.55  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      .....+...|.++... ++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++|+.+.+...   
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---   86 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---   86 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence            3455667778887666 9999999999999886643      45889999999999999999999999999876543   


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                         .++..+|.++..+|++++|+..|++++.....
T Consensus        87 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           87 ---RFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence               47889999999999999999999999865543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.07  E-value=1.3e-09  Score=87.44  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLS----------MAARYYKEIAELYESEHNIEQTIVFFEKAA  139 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~----------~~a~~l~~la~~~~~~g~~~~A~~~y~~A~  139 (289)
                      ..+..+...|.++... ++++|+.+|++++.+.+...+..          ....++.++|.++...|++++|+.+|++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4566788888888666 99999999999998876654221          125789999999999999999999999999


Q ss_pred             HHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHH
Q 022992          140 DMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAI  212 (289)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A  212 (289)
                      .+.+..      ..++..+|.++..+|++++|+.+|++++.....+       ...+..++.++...++..++
T Consensus       116 ~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          116 KIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-------LDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHHHHHC-
T ss_pred             HhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHHHHHHHH
Confidence            985532      3578999999999999999999999998543221       23345566666655554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.06  E-value=7.7e-09  Score=94.12  Aligned_cols=203  Identities=11%  Similarity=0.017  Sum_probs=130.2

Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           39 AANSFKLAK---SWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        39 A~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      .|.+|...|   ++++|+..|.++++.-    +.  .+..+.++|.+|...     ++++|+.+|++|.   +  |    
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--g----  246 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRG----TV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--G----  246 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTT----CS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--G----
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCC----CH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--C----
Confidence            356777788   8888888888887652    21  244557788888654     8889999999986   2  2    


Q ss_pred             HHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Q 022992          111 AARYYKEIAEL-Y--ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-----QYHKSIEIYEEIARQS  182 (289)
Q Consensus       111 ~a~~l~~la~~-~--~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~  182 (289)
                      -+.++.++|.+ +  ...+++++|+.+|++|++.    |    -..++.++|.+|. .|     ++++|+.+|+++.   
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---  314 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---  314 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence            24478888888 4  4568999999999998853    2    2357788898887 55     8999999998886   


Q ss_pred             hhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccC--HHHHHHHHHh
Q 022992          183 LNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEED--IAKFTDVVKE  256 (289)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d--~~~~~~al~~  256 (289)
                      .+       ....++++|.+|..    ..|+.+|...|+++.+..  .   .+  ....|+..+..|.  ......|...
T Consensus       315 ~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~---~~--A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          315 GR-------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--Q---NS--ADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             TT-------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--C---TT--HHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             CC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--h---HH--HHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            11       23356777877765    338888999988887632  2   12  2345566554432  2234444444


Q ss_pred             ccccCCC-chhHHHHHHHHHHhccccc
Q 022992          257 FDSMTPL-DPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       257 ~~~~~~~-d~~~~~~~~~~~~~~~~~~  282 (289)
                      |...... ++.-...+..+...+++.+
T Consensus       381 ~~~A~~~g~~~a~~~l~~l~~~~~~~~  407 (452)
T 3e4b_A          381 SQLAKAQDTPEANDLATQLEAPLTPAQ  407 (452)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCHHH
Confidence            4443222 2333344455554444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.05  E-value=5.1e-09  Score=79.48  Aligned_cols=105  Identities=10%  Similarity=0.100  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      .....+..+|..+...|++++|+.+|++++.+.+..      ..++..+|.++..+|++++|+..|++++...+.+    
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----   85 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE----   85 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence            345678889999999999999999999999986643      3578999999999999999999999998653222    


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                         ...++++|.++...|+++.|...|++++.+.|..+
T Consensus        86 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           86 ---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             ---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence               23567889999999999999999999998877644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.05  E-value=3.3e-09  Score=78.39  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~  150 (289)
                      ....+..+|.++... ++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++++++.+..     
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----   83 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-----   83 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----
Confidence            355677777777665 8888888888888765432      4578888999888899999999999998875532     


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG  207 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  207 (289)
                       ..++..+|.++..+|++++|+.+|++++.....       ....+..++.++...|
T Consensus        84 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           84 -IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-------CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-------GTHHHHHHHHHHHHHT
T ss_pred             -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHhc
Confidence             357888899999999999999999888744321       1223455566665544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.05  E-value=5.5e-09  Score=76.76  Aligned_cols=108  Identities=12%  Similarity=0.055  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .+..+..+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++++......+....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            46788999999999999999999999999986542      367899999999999999999999999865433221111


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDP  224 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~  224 (289)
                      .....+..+|.++...|++..|...|++++.+.+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            1245677889999999999999999999988755

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=2e-09  Score=95.45  Aligned_cols=129  Identities=12%  Similarity=0.174  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      +..+...|..+...|++++|+.+|.+++++.....          .....+.++.++|.+|... ++++|+.++++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            44566678888899999999999999999765431          3345577888999998777 999999999999887


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE  173 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  173 (289)
                      .+.      -+.++..+|.++..+|++++|+.+|++|+++.+..      ..++..++.++..+++++++.+
T Consensus       303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence            543      35688899999999999999999999999886543      2467788888888888877765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.04  E-value=1e-08  Score=75.10  Aligned_cols=121  Identities=13%  Similarity=0.093  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc
Q 022992           69 KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV  147 (289)
Q Consensus        69 ~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~  147 (289)
                      ....+..+..+|.++... ++++|+.++++++...+..      ..++..+|.++...|++++|+.+|++++.+.+..  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--   79 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--
Confidence            344566777788888666 8999999999998875432      4578899999998999999999999999875432  


Q ss_pred             cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC
Q 022992          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD  208 (289)
Q Consensus       148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd  208 (289)
                          ..++..+|.++...|++++|+.+|++++.....       ....+..++.++...|+
T Consensus        80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           80 ----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-------NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------CHHHHHHHHHHHHHHTT
T ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-------chHHHHHHHHHHHHHhc
Confidence                357889999999999999999999998754321       12345566777766665

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.03  E-value=4.7e-09  Score=95.68  Aligned_cols=131  Identities=13%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      .+..+...|..+...|+|++|+.+|.+|+.+......         ....+.++.++|.+|.+. ++++|+.+|++|+.+
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            3456667788889999999999999999998765421         122367899999999887 999999999999998


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  174 (289)
                      .+.+      ..++.++|.++..+|++++|+.+|++|+++.+...      .++..++.++..++++++|.+.
T Consensus       347 ~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~------~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          347 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK------AARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             STTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            7643      56899999999999999999999999999866433      4788999999999999888763

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.02  E-value=1.3e-08  Score=74.73  Aligned_cols=121  Identities=19%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI-GRLS  109 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~-g~~~  109 (289)
                      .+..+...|.++...|++++|..+|.+++.....      ...++..+|.++... ++++|+.++++++.+.+.. ++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4556777888999999999999999999987532      146788889998766 9999999999999999875 5556


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL  165 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~  165 (289)
                      ....++..+|.++...|++++|+.+|++++++.+.       ......++.+...+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~  125 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence            66889999999999999999999999999987542       23455555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.02  E-value=4.1e-09  Score=77.34  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           30 EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        30 ~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      ..-...+...|..+...|++++|+.+|.+++......      ...+..+|.++... ++++|+.++++++.+.+..   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---   79 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---
Confidence            4445677778889999999999999999999874321      55788899999777 9999999999999985533   


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (289)
                         ..++..+|.++...|++++|+.+|++++++.+..      ..++..++.++..+|++
T Consensus        80 ---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 ---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence               4588999999999999999999999999986543      25778899999888875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.01  E-value=1.4e-09  Score=85.37  Aligned_cols=121  Identities=7%  Similarity=0.106  Sum_probs=91.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH-HHHh
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAEL  165 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~  165 (289)
                      ++++|+.++++++...+..      +.++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.+ +...
T Consensus        25 ~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQN------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQA   92 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhc
Confidence            6778888888888775432      3478888888888888999999998888886543      3567888888 7788


Q ss_pred             cCH--HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          166 EQY--HKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       166 g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      |++  ++|+.+|++++.....       ....++.+|.++...|++..|...|++++.+.|..
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSN-------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             CCcchHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            888  8888888888754321       12346677888888888888888888888877764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.01  E-value=4.1e-09  Score=77.85  Aligned_cols=118  Identities=16%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      -...+...|.++...|++++|+.+|.++++.....      ..++..+|.++... ++++|+.++++++.+.+.      
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------   82 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------
Confidence            34456677888899999999999999999874321      56888999999877 999999999999998654      


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (289)
                      ...++..+|.++...|++++|+.+|++++++.+...      .++..++.++..+|+
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK------EAADGYQRCMMAQYN  133 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT------HHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhcC
Confidence            245899999999999999999999999999866532      467888888877664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.01  E-value=3.3e-09  Score=78.55  Aligned_cols=100  Identities=11%  Similarity=0.017  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      .+..+|..+...|++++|+..|++++.+.+..      ..++..+|.++..+|++++|+..|++++.....       ..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------~~   85 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------DI   85 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Confidence            45677888888899999999999998876643      357888999999999999999999988754322       12


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ..+..+|.++...|++++|...|++++++.|.+
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            356778888888889999999998888877764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.00  E-value=6.6e-10  Score=101.97  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+.++|.++... ++++|+++|++|+++.+..      +.++.++|.++..+|++++|+.+|++|+++.+..      
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------   73 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------   73 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence            44555666666655 8999999999999885543      6689999999999999999999999999885532      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH--HHccCCHHHHHHHHH-----------H
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC--QLCKGDVVAITNALE-----------R  218 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~gd~~~A~~~~~-----------~  218 (289)
                      ..++.++|.++..+|++++|++.|++++.....+       ...+..++.+  +...|++++|.+.++           +
T Consensus        74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  146 (477)
T 1wao_1           74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIE  146 (477)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhh
Confidence            3578899999999999999999999998553222       1234455555  677788889999888           6


Q ss_pred             HhhcCCCCC
Q 022992          219 YQDMDPTFS  227 (289)
Q Consensus       219 ~~~~~~~~~  227 (289)
                      ++.+.+.+.
T Consensus       147 al~~~~~~~  155 (477)
T 1wao_1          147 SMTIEDEYS  155 (477)
T ss_dssp             SCCCCTTCC
T ss_pred             hcccccccc
Confidence            666666654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.00  E-value=6.9e-09  Score=92.05  Aligned_cols=129  Identities=9%  Similarity=-0.013  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g----------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      .+..+...|..+... ++++|+.+|++|+.+.....          .....+.++.++|.++..+|++++|+.+|++|++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            355678888888766 99999999999999876532          3456678999999999999999999999999999


Q ss_pred             HHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHH
Q 022992          141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAIT  213 (289)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~  213 (289)
                      +.+..      ..++..+|.++..+|++++|+..|++++.....+       ...+..++.++...++..++.
T Consensus       302 ~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-------~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          302 IDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-------KAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             TCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHH
Confidence            76532      4688999999999999999999999998553222       223445556665555555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.00  E-value=5.5e-09  Score=95.26  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=114.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHH
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR---------LSMAARYYK  116 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~---------~~~~a~~l~  116 (289)
                      +++++|...|.++.+..      ...+..+.+.|.++... ++++|+.+|++|+.+.+....         ....+.++.
T Consensus       248 ~~~~~A~~~~~~~~~~~------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  321 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL  321 (457)
T ss_dssp             EEEECCCCGGGSCHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence            34455555555554442      24577888899998777 999999999999999876531         223478999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHL  196 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  196 (289)
                      ++|.++..+|++++|+.+|++|+++.+..      ..++.++|.++..+|+|++|+..|++++.....       ....+
T Consensus       322 nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-------~~~a~  388 (457)
T 1kt0_A          322 NLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-------NKAAR  388 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHH
Confidence            99999999999999999999999987643      367999999999999999999999999743221       12356


Q ss_pred             HHHHHHHHccCCHHHHHHH
Q 022992          197 LNAGICQLCKGDVVAITNA  215 (289)
Q Consensus       197 ~~~~~~~l~~gd~~~A~~~  215 (289)
                      ..++.++...++..++.+.
T Consensus       389 ~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          389 LQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6778888888877766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=6.4e-09  Score=88.80  Aligned_cols=148  Identities=9%  Similarity=-0.070  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      ...+..+|..+... ++++|+..|++++...+..      ..++..+|.++...|++++|+.+|++++...+.      .
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------~  184 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------T  184 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS------H
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc------h
Confidence            34556777777555 9999999999999998754      358999999999999999999999999877552      1


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE  231 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e  231 (289)
                      .......+..+...++.++|+..|++++...++       ....+++++.++...|++++|...|.+++...|.+.+   
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~---  254 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD---  254 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG---
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc---
Confidence            234566677788889999999999999855332       2345778899999999999999999999998887632   


Q ss_pred             HHHHHHHHHHH
Q 022992          232 YRLLSDIAASM  242 (289)
Q Consensus       232 ~~~l~~l~~a~  242 (289)
                      ......++..+
T Consensus       255 ~~a~~~l~~~~  265 (287)
T 3qou_A          255 GQTRXTFQEIL  265 (287)
T ss_dssp             GHHHHHHHHHH
T ss_pred             chHHHHHHHHH
Confidence            23344455544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.99  E-value=7.5e-09  Score=77.31  Aligned_cols=101  Identities=12%  Similarity=0.016  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +..+..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|++++|+..|++++.....       
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------   75 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ-------   75 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-------
Confidence            4567778888888888888888888888775542      356778888888888888888888887644211       


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ....++.+|.++...|++..|...|++++.+.|.
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            2235667777888888888888888887776554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.98  E-value=3.4e-09  Score=90.25  Aligned_cols=100  Identities=14%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..+...|..+...|++++|+..|.+++.....      ....+.++|.+|... ++++|+.++++|+.+.+..      .
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~   72 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------V   72 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------H
Confidence            44555566666666666666666666665321      134566666666554 6666666666666553321      2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .++..+|.++...|++++|+.+|++++++.+..
T Consensus        73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            456666666666666666666666666665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.97  E-value=5.3e-09  Score=78.15  Aligned_cols=100  Identities=19%  Similarity=0.181  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+..+|.++... ++++|+.+|++++.+.+..      ..++.++|.++...|++++|+.+|++++.+.+..      
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence            56777888888766 9999999999999886543      4589999999999999999999999999986542      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      ..++..+|.++..+|++++|+..|++++.....
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            357899999999999999999999999865544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.96  E-value=1e-08  Score=74.48  Aligned_cols=99  Identities=18%  Similarity=0.331  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      ..+..+..+|.++... ++++|+.++++++...+..      ..++..+|.++...|++++|+.+|++++.+.+..    
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----   76 (125)
T 1na0_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----   76 (125)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----
Confidence            3456777888888666 9999999999998875422      3578899999999999999999999999875432    


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                        ..++..+|.++...|++++|+.+|++++..
T Consensus        77 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           77 --AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence              357789999999999999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.95  E-value=1.5e-09  Score=85.33  Aligned_cols=120  Identities=15%  Similarity=0.172  Sum_probs=94.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-H
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAEL-Y  122 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~-~  122 (289)
                      ..|++++|+..+.+++.....      ...++..+|.+|... ++++|+.+|++++.+.+..      ..++..+|.+ +
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~   89 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLY   89 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHH
Confidence            356677777777777765432      145778889999776 9999999999999987643      4588899999 7


Q ss_pred             HhcCCH--HHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          123 ESEHNI--EQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       123 ~~~g~~--~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ...|++  ++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++...
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            788998  99999999999986543      3578999999999999999999999998543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.94  E-value=1.2e-08  Score=92.30  Aligned_cols=101  Identities=12%  Similarity=-0.023  Sum_probs=88.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIA  119 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la  119 (289)
                      ..|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.+++++++++.+.  .+....+..++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            467899999999999999874 45 3457889999999999776 9999999999999999875  46788999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhcc
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .+|..+|++++|+.+|++|+++++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.94  E-value=4.1e-09  Score=78.00  Aligned_cols=93  Identities=8%  Similarity=0.004  Sum_probs=74.6

Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      +...|.++... ++++|+.+|++++.+.+..      +.++..+|.++...|++++|+.+|++|+++.+..      ..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~   87 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAV   87 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Confidence            34455555444 8888888888888876643      4588899999999999999999999999986653      257


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      +..+|.++...|++++|+..|++++.
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88999999999999999999999873

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.94  E-value=1.5e-08  Score=74.86  Aligned_cols=105  Identities=10%  Similarity=0.138  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      .+..+|.++...|++++|+..|+++++..+..   .....++..+|.++...|++++|+..|++++......+    ...
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~   76 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----KAA   76 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----THH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----ccH
Confidence            46778888888899999999999999876643   23346788999999999999999999999875432221    123


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      ..++.+|.++...|++++|...|++++...|.
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45778889999999999999999998887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.93  E-value=4.3e-08  Score=70.41  Aligned_cols=102  Identities=11%  Similarity=-0.013  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +..+..+|.++...|++++|+.+|++++...+..      ..++..+|.++...|++++|+..+++++.....       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-------
Confidence            4678888899888899999999999999876543      357888999999999999999999998754321       


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ....+..+|.++...|++..|...+++++++.|..
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            22356778888888999999999999988876653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.93  E-value=1.6e-08  Score=91.42  Aligned_cols=125  Identities=10%  Similarity=0.058  Sum_probs=104.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 022992           42 SFKLAKSWDKAGATYVKLANCHLK-LE-SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--GRLSMAARYYK  116 (289)
Q Consensus        42 ~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~  116 (289)
                      -++..|+|++|...|++++++..+ +| +....+.++.++|.+|... ++++|+.++++++.++.+.  .+....+..+.
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            355789999999999999988763 44 3456789999999999766 9999999999999999874  56778999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHHHHhc
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++|.+|..+|++++|+.+|++|+++++.. | +.+...+++.+++.+...++
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998864 3 33455677788888776543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.93  E-value=9e-08  Score=87.02  Aligned_cols=159  Identities=14%  Similarity=0.061  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHH--------------HHHHHc----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc---cC
Q 022992           28 KYEDAADLFDKAA--------------NSFKLA----KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYK---KT   86 (289)
Q Consensus        28 ~~~~A~~~~~~A~--------------~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~---~~   86 (289)
                      ++++|+..|.+++              .+|...    +++++|+..|.+++     .|+    ..++.++|.+|.   ..
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~----~~a~~~Lg~~~~~~~~~  264 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY----PASWVSLAQLLYDFPEL  264 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS----THHHHHHHHHHHHSGGG
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC----HHHHHHHHHHHHhCCCC
Confidence            8999999998874              334333    69999999999987     233    457888999843   23


Q ss_pred             -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 022992           87 -SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-----NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQ  160 (289)
Q Consensus        87 -~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-----~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~  160 (289)
                       ++++|+.+|++|++.    |    -+.++.++|.+|.. |     ++++|+.+|++|+     .|.    ..++.++|.
T Consensus       265 ~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~  326 (452)
T 3e4b_A          265 GDVEQMMKYLDNGRAA----D----QPRAELLLGKLYYE-GKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQ  326 (452)
T ss_dssp             CCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHH-CSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHH
Confidence             999999999999843    4    35688999999995 7     9999999999998     222    357899999


Q ss_pred             HHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992          161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM  222 (289)
Q Consensus       161 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~  222 (289)
                      +|..    ..++++|+.+|+++...         +.....+++|.+|..    ..|...|...|+++.+.
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~Aa~~---------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTAARN---------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHHHTT---------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHhh---------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            8887    34999999999999731         223456788888863    35899999999998763

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.92  E-value=3.7e-09  Score=90.04  Aligned_cols=89  Identities=21%  Similarity=0.263  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992            7 RAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEA   72 (289)
Q Consensus         7 ~a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~a   72 (289)
                      .+..+...|...++.     |+|++|+..|.+|              |.+|...|++++|+..|.+++++...      .
T Consensus         3 ~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~   71 (281)
T 2c2l_A            3 SAQELKEQGNRLFVG-----RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S   71 (281)
T ss_dssp             CHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------C
T ss_pred             hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------C
Confidence            345555556555552     6888888888887              56677888888888888888876332      2


Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG  106 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g  106 (289)
                      ..++..+|.+|... ++++|+.+|++++.+.+...
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            45777888888766 88888888888888887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.90  E-value=2.5e-08  Score=90.12  Aligned_cols=96  Identities=8%  Similarity=0.034  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-C-ccchHHHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-E-VTTSANQCKQKVAQYA  162 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~-~~~~~~~~~~~l~~~~  162 (289)
                      ++++|+..|++++++..+.  .+....+.++.++|.+|..+|++++|+.+|++++++++.. | +.+..+..+++||.+|
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            8999999999999998764  4567899999999999999999999999999999998864 3 4466778999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHHH
Q 022992          163 AELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ..+|+|++|+.+|++++.+.
T Consensus       393 ~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          393 MGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHHH
Confidence            99999999999999997543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.90  E-value=8.4e-08  Score=88.69  Aligned_cols=187  Identities=12%  Similarity=0.105  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc--------CCHH-------HHHHHHHHHHH-HHHhcCCHHHHHH
Q 022992           50 DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK--------TSSN-------EAISCLEQAVN-MFCDIGRLSMAAR  113 (289)
Q Consensus        50 ~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~--------~~~~-------~A~~~~~~A~~-~~~~~g~~~~~a~  113 (289)
                      ..+...|++++......      ...+...|.++..        ++++       +|+..|++|+. +.+.      ...
T Consensus       255 ~~a~~~y~~al~~~p~~------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~  322 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHH------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NML  322 (530)
T ss_dssp             HHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHH
T ss_pred             HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHH
Confidence            36677888888875432      4567777777753        3665       89999999986 5442      345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      .+..+|.++...|++++|...|++++++.+..     ...++..++.++...|++++|.++|++++...   + ..   .
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~-~~---~  390 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---R-TR---H  390 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---T-CC---T
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---C-Cc---h
Confidence            88999999999999999999999999864321     22478899999999999999999999997321   1 11   1


Q ss_pred             hHHHHH-HHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccccCCCch
Q 022992          194 GHLLNA-GICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDSMTPLDP  265 (289)
Q Consensus       194 ~~~~~~-~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~~~~~d~  265 (289)
                      ..+... .+++...|+.+.|+..|+++++..|..   .  .+...++... ..|+.+..+...+..-...+++|
T Consensus       391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~---~--~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI---P--EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC---H--HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC---H--HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            122222 233456899999999999998876643   2  3344555544 36776555444444433344444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.90  E-value=6.2e-08  Score=89.58  Aligned_cols=189  Identities=11%  Similarity=0.005  Sum_probs=130.1

Q ss_pred             cCCHH-------HHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           46 AKSWD-------KAGATYVKLAN-CHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (289)
Q Consensus        46 ~g~~~-------~A~~~~~~a~~-~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~  116 (289)
                      .|+++       +|..+|.+|++ +..      .....+...+.++... ++++|...|++++++.+.  +   ...++.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~  360 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYI  360 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHH
Confidence            68876       88888888886 422      1245777888888766 999999999999986332  2   235899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY-AAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  195 (289)
                      ..|.++...|++++|+..|++|++..+..      ..++...+.+ +...|++++|..+|++++.....+       ...
T Consensus       361 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-------~~~  427 (530)
T 2ooe_A          361 QYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEY  427 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-------HHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-------HHH
Confidence            99999988899999999999999864321      1233333433 346899999999999998654321       235


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCHHHHHHHHHhccc
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDIAKFTDVVKEFDS  259 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~~~~~~al~~~~~  259 (289)
                      +...+......|+...|+..|++++...+.-+... ..+....+... ..||.+......+....
T Consensus       428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~-~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56677777889999999999999988654422111 22333333322 36787655554444333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=3.3e-08  Score=72.93  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=82.6

Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      +...|.++... ++++|+.+|++++...+...   ....++..+|.++...|++++|+.+|++++...+...   ....+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~   78 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV---YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGG   78 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHH
Confidence            45566776555 99999999999988876443   2456889999999999999999999999999876542   24568


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          155 KQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       155 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      +..+|.++..+|++++|+..|++++...
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8999999999999999999999998543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.88  E-value=1.2e-08  Score=72.78  Aligned_cols=103  Identities=17%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      .++..+|.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....     ...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~   75 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYN   75 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cch
Confidence            356788999999999999999999999886542      357889999999999999999999999743211     012


Q ss_pred             hhHHHHHHHHHHcc-CCHHHHHHHHHHHhhcCCCC
Q 022992          193 KGHLLNAGICQLCK-GDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       193 ~~~~~~~~~~~l~~-gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ...+..++.++... |++.+|...+++.....|..
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            34567888999999 99999999999998877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.88  E-value=2.3e-09  Score=93.92  Aligned_cols=141  Identities=11%  Similarity=-0.021  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC------CHHH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG------RLSM-----AARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g------~~~~-----~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      +..+...|.++... ++++|+.+|++|+.+.+...      +...     ...++.++|.++..+|++++|+.+|++|++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455556666554 66666666666665543211      0000     113889999999999999999999999999


Q ss_pred             HHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH-HHccCCHHHHHHHHHHH
Q 022992          141 MFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGIC-QLCKGDVVAITNALERY  219 (289)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gd~~~A~~~~~~~  219 (289)
                      +.+..      ..++.++|.++..+|+|++|+..|++++.....+       ...+..++.+ ....+....+...|.+.
T Consensus       259 ~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          259 EEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86542      3578999999999999999999999987433221       1122334434 23345566777777777


Q ss_pred             hhcCCCC
Q 022992          220 QDMDPTF  226 (289)
Q Consensus       220 ~~~~~~~  226 (289)
                      +...|..
T Consensus       326 l~~~p~~  332 (338)
T 2if4_A          326 FKGKDEG  332 (338)
T ss_dssp             -------
T ss_pred             hCCCCCC
Confidence            6665554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.88  E-value=3e-08  Score=71.92  Aligned_cols=117  Identities=19%  Similarity=0.306  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      ....+...+.++...|++++|...|.+++.....      ....+..+|.++... ++++|+.++++++...+..     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----   76 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----   76 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----
Confidence            3556777888999999999999999999987432      145778889998777 9999999999999875432     


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                       ..++..+|.++...|++++|+.+|++++++.+..      ..++..++.++...|
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence             4578899999999999999999999999886543      246777887776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.86  E-value=4e-08  Score=88.76  Aligned_cols=108  Identities=3%  Similarity=-0.053  Sum_probs=90.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--Cccch
Q 022992           75 AYVDAAHCYKKTSSNEAISCLEQAVNMFCDI--GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE--EVTTS  150 (289)
Q Consensus        75 ~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~--g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~--~~~~~  150 (289)
                      .+..+..++.+.++++|+..+++++++..+.  .+....+.++.++|.+|..+|++++|+.+|++++++++..  ...+.
T Consensus       290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~  369 (429)
T 3qwp_A          290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV  369 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence            3444555556669999999999999887543  3566789999999999999999999999999999998764  34466


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .+..+++||.+|..+|+|++|+.+|++++...
T Consensus       370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999997543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.8e-09  Score=77.54  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+..+|.++... ++++|+.+|++++.+.+..      +.++.++|.++...|++++|+.+|++++++.+..+.....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            45778888888766 9999999999999986643      4689999999999999999999999999998877555556


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                      ..++..+|.++..+|++++|+..+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            77889999999999988887766544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.85  E-value=4.1e-08  Score=70.55  Aligned_cols=96  Identities=13%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+...|.++... ++++|+.+|++++...+..      ..++..+|.++...|++++|+.+|++++++.+..      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   71 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------   71 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence            45677778888666 9999999999998876543      4588999999999999999999999999986542      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..++..+|.++...|++++|+.+|++++.
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35789999999999999999999999873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.85  E-value=6.1e-09  Score=76.26  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++++|+.+|++|+++.   .+......++.++|.++...|++++|+.+|++++++.+..      ..++..+|.++..+|
T Consensus         5 ~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLG   75 (117)
T ss_dssp             --CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcC
Confidence            6788999999998762   1123456789999999999999999999999999987654      367899999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 022992          167 QYHKSIEIYEEIARQS  182 (289)
Q Consensus       167 ~~~~A~~~~~~a~~~~  182 (289)
                      ++++|+..|++++...
T Consensus        76 ~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           76 RYEQGVELLLKIIAET   91 (117)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999998554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.84  E-value=1.6e-09  Score=99.43  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEI  118 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~l  118 (289)
                      |.++...|++++|+.+|.+++++....      +.++.++|.+|... ++++|+.+|++|+++.+.      .+.++.++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l   80 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRR   80 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHH
Confidence            445556777888888888888774322      67889999999877 999999999999998543      25689999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH--HHHhcCHHHHHHHHH
Q 022992          119 AELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY--AAELEQYHKSIEIYE  176 (289)
Q Consensus       119 a~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  176 (289)
                      |.++..+|++++|+.+|++|+++.+...      .++..++.+  +...|++++|++.++
T Consensus        81 g~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           81 AASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999876543      356667777  888999999999999

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=7.2e-08  Score=72.48  Aligned_cols=106  Identities=10%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .+..+..+|..+...|++++|+.+|++++++.+..   .....++..+|.++...|++++|+.+|++++.....      
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence            35677788888888888888888888888764421   123467788888888888888888888888744211      


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                       ....++.+|.++...|+++.|...|++++.+.|..
T Consensus        98 -~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A           98 -DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence             12345677888888888888888888888776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.81  E-value=6.5e-09  Score=90.98  Aligned_cols=138  Identities=17%  Similarity=0.129  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc------CCHHHH-----HHHHHHHHHHHccC-CHHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKL------ESKHEA-----AQAYVDAAHCYKKT-SSNEAISCLEQAV   99 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~a-----a~~~~~~a~~~~~~-~~~~A~~~~~~A~   99 (289)
                      .+..+...|..+...|++++|+.+|.+++.+....      +....+     ..++.++|.+|... ++++|+.+|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445566677777788888888888877664221      111111     13789999999887 9999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Q 022992          100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AELEQYHKSIEIYEEI  178 (289)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a  178 (289)
                      .+.+..      ..++.++|.++..+|++++|+.+|++|+++.+...      .++..++.+. ...+..+++...|.++
T Consensus       258 ~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~------~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          258 TEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK------AIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            986533      46899999999999999999999999999876532      4567777774 4456778888888888


Q ss_pred             HHH
Q 022992          179 ARQ  181 (289)
Q Consensus       179 ~~~  181 (289)
                      +..
T Consensus       326 l~~  328 (338)
T 2if4_A          326 FKG  328 (338)
T ss_dssp             ---
T ss_pred             hCC
Confidence            643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.3e-07  Score=71.11  Aligned_cols=100  Identities=10%  Similarity=0.002  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           73 AQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        73 a~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      +..+...|.++... ++++|+.+|++++.+.+   +......++.++|.++...|++++|+.+|++++.+.+..      
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------
Confidence            45666777777665 88888888888877543   333457789999999999999999999999999885542      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ..++..+|.++..+|++++|+.+|++++..
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            357889999999999999999999999754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.77  E-value=5e-09  Score=74.85  Aligned_cols=95  Identities=9%  Similarity=0.075  Sum_probs=78.8

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      .+..+|.++... ++++|+.++++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+..    ....
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~   77 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----YNKD   77 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----TCHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----chHH
Confidence            456678888666 9999999999999875432      3578899999999999999999999999886541    1235


Q ss_pred             HHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAEL-EQYHKSIEIYEEIA  179 (289)
Q Consensus       154 ~~~~l~~~~~~~-g~~~~A~~~~~~a~  179 (289)
                      ++..+|.++..+ |++++|++++++++
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            789999999999 99999999999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.77  E-value=8e-08  Score=72.75  Aligned_cols=108  Identities=13%  Similarity=0.242  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-
Q 022992           47 KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-  124 (289)
Q Consensus        47 g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-  124 (289)
                      +++++|+..|.++++.    |++.    +.  +|.+|... .+++|+.+|++|++.    |+    +.+..++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~----g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL----NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHT----TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcC----CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcC
Confidence            4678888888888754    3332    22  89999887 888999999999875    43    5688999999998 


Q ss_pred             ---cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 022992          125 ---EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIAR  180 (289)
Q Consensus       125 ---~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~  180 (289)
                         .+++++|+.+|++|++.    +.    ..+..++|.+|..    .+++++|+.+|+++..
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence               78999999999999875    22    3578999999999    8999999999999973

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=2.4e-08  Score=84.65  Aligned_cols=131  Identities=16%  Similarity=0.098  Sum_probs=97.1

Q ss_pred             HHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHH
Q 022992           80 AHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKV  158 (289)
Q Consensus        80 a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l  158 (289)
                      +.++... ++++|.+.|...+.     +.+...  ....+|.++...+++++|+.+|+++...-    ++.....++..+
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~~a~~~L  177 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAGAAGVAH  177 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHHHHHHHH
Confidence            4444333 88888888776654     334344  77888889999999999999998664421    222334688999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          159 AQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       159 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      |.++..+|++++|+..|++++... ..+  . -.....++.|+|+..+|+.++|+..|++.....|.
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~-~~P--~-~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSP-AGE--A-CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTST-TTT--T-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCC-CCc--c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999999999999996211 001  0 03345678899999999999999999999988775

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.75  E-value=7.7e-09  Score=92.81  Aligned_cols=191  Identities=9%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH-------------HH
Q 022992           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-------------MF  102 (289)
Q Consensus        37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~-------------~~  102 (289)
                      ...|.++...|++++|+++|.++-       +    ...+..++.++... ++++|+.+++.+..             .|
T Consensus        36 s~La~A~l~~g~~~eAIdsfika~-------D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y  104 (449)
T 1b89_A           36 SQLAKAQLQKGMVKEAIDSYIKAD-------D----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcCC-------C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            355788889999999999998752       2    12555556666555 77888888777763             33


Q ss_pred             HhcCCHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHH
Q 022992          103 CDIGRLSMA--------ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI  174 (289)
Q Consensus       103 ~~~g~~~~~--------a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  174 (289)
                      .+.|+...+        ...+.++|..+...|++++|+.+|.++              ..+..+|.++..+|+|++|++.
T Consensus       105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea  170 (449)
T 1b89_A          105 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDG  170 (449)
T ss_dssp             ----CHHHHTTTTTCC----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHH
Confidence            344444332        237888888888889999999998866              2467889999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHH
Q 022992          175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVV  254 (289)
Q Consensus       175 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al  254 (289)
                      |+++.            ....+..++.++...|++..|..+...   +.    ..++.  +..++..+.  +...+.+++
T Consensus       171 ~~KA~------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~----~~ad~--l~~lv~~Ye--k~G~~eEai  227 (449)
T 1b89_A          171 ARKAN------------STRTWKEVCFACVDGKEFRLAQMCGLH---IV----VHADE--LEELINYYQ--DRGYFEELI  227 (449)
T ss_dssp             HHHHT------------CHHHHHHHHHHHHHTTCHHHHHHTTTT---TT----TCHHH--HHHHHHHHH--HTTCHHHHH
T ss_pred             HHHcC------------CchhHHHHHHHHHHcCcHHHHHHHHHH---HH----hCHhh--HHHHHHHHH--HCCCHHHHH
Confidence            98882            112345556666778888888655432   21    12221  334555553  123455555


Q ss_pred             HhccccCCCchhHHHHHHHHH
Q 022992          255 KEFDSMTPLDPWKTTLLLRVK  275 (289)
Q Consensus       255 ~~~~~~~~~d~~~~~~~~~~~  275 (289)
                      +-++..-.+|+-...++..+.
T Consensus       228 ~lLe~aL~le~ah~~~ftel~  248 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELA  248 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHH
Confidence            555555556655555555543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.75  E-value=4.4e-05  Score=67.63  Aligned_cols=245  Identities=9%  Similarity=0.018  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      ..+.+..|...|+.++-.++.......+.... -..++....++-..+...  ..+.-++.+..+++-.........-..
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34558899999999999888887776665543 345677777888877665  566777888888877777777666666


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      .-.++|..|...|+|.+|...+.+...-....++.....+++..-..+|..++++.++-.+|.++......-...+.-.+
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            77799999999999999999999999988877766677788888889999999999999999999643321100011112


Q ss_pred             hHHHHHHHHHH-ccCCHHHHHHHHHHHhhcCCCCC------------------------------------CchHHHHHH
Q 022992          194 GHLLNAGICQL-CKGDVVAITNALERYQDMDPTFS------------------------------------GTREYRLLS  236 (289)
Q Consensus       194 ~~~~~~~~~~l-~~gd~~~A~~~~~~~~~~~~~~~------------------------------------~~~e~~~l~  236 (289)
                      ......|+.|+ ..+|+..|...|-++...+...+                                    ..++...+.
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~  260 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMK  260 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHH
Confidence            22334588888 88999888666554321111100                                    134455567


Q ss_pred             HHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcccc
Q 022992          237 DIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAK  281 (289)
Q Consensus       237 ~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~  281 (289)
                      .|+.++..+|...|...+..|...-..||....-+..+.+.++-.
T Consensus       261 ~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~  305 (394)
T 3txn_A          261 SVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQ  305 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            788888889999999999998876667887666666666555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.71  E-value=2.5e-07  Score=69.98  Aligned_cols=109  Identities=12%  Similarity=0.165  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH--
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE--  164 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~--  164 (289)
                      ++++|+.+|++|.+.    |++...      +|.+|...+..++|+.+|++|++.    ++    ..+..++|.+|..  
T Consensus        10 d~~~A~~~~~~aa~~----g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~   71 (138)
T 1klx_A           10 DLKKAIQYYVKACEL----NEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK   71 (138)
T ss_dssp             HHHHHHHHHHHHHHT----TCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHcC----CCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCC
Confidence            788999999999754    443322      999999888999999999999885    22    3578999999998  


Q ss_pred             --hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992          165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM  222 (289)
Q Consensus       165 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~  222 (289)
                        .+++++|+.+|+++...         +....++++|.+|..    .+|...|...|+++.+.
T Consensus        72 g~~~d~~~A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           72 YVKKDLRKAAQYYSKACGL---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence              89999999999999732         223456788999887    78999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.68  E-value=4e-08  Score=71.83  Aligned_cols=91  Identities=14%  Similarity=0.086  Sum_probs=74.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           46 AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      .|++++|+.+|.+++++.   .+......++.++|.+|... ++++|+.+|++++++.+..      ..++..+|.++..
T Consensus         3 ~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~   73 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYN   73 (117)
T ss_dssp             ----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence            578899999999998752   11334577899999999877 9999999999999997755      5689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcc
Q 022992          125 EHNIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~  145 (289)
                      .|++++|+.+|++++...+..
T Consensus        74 ~g~~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHHCCC
T ss_pred             cCCHHHHHHHHHHHHHhCCCc
Confidence            999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.66  E-value=2e-08  Score=71.90  Aligned_cols=96  Identities=10%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +..+..+|.++...|++++|+.+|++|+++.+..      ..++.++|.++..+|++++|+..|++++......+. ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~   76 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH-VAI   76 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS-HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH-HHH
Confidence            5678999999999999999999999999986643      367899999999999999999999999843322111 011


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHH
Q 022992          192 VKGHLLNAGICQLCKGDVVAITN  214 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~  214 (289)
                      ....+..++.++...|+...|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHh
Confidence            13445667777777665544433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=98.63  E-value=6.4e-05  Score=64.78  Aligned_cols=241  Identities=10%  Similarity=0.057  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhccCCCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc
Q 022992            9 EEFEKKAEKKLNGWGLFGSKY---EDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK   85 (289)
Q Consensus         9 ~~~~~~A~~~~k~~~~~~~~~---~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~   85 (289)
                      .+.+++-++..+.     |+|   -+|.+.|.-...-|..+++|++|++.....+..+-+.|....++.....+..+|.+
T Consensus        13 ~~~i~rl~~~I~~-----G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~   87 (336)
T 3lpz_A           13 ERIIARLQRRIAE-----GQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ   87 (336)
T ss_dssp             HHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-----CCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence            3444444444442     799   99999999999999999999999999999999999999888888877777788866


Q ss_pred             C--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ccchHHHHHHHHHHHH
Q 022992           86 T--SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-VTTSANQCKQKVAQYA  162 (289)
Q Consensus        86 ~--~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-~~~~~~~~~~~l~~~~  162 (289)
                      .  .+++  +...+.++++......                  .++ =..+..+|+.--.+.| .+.+-...+..+|.++
T Consensus        88 ~~~~~~~--~~~~rL~~L~~~~~~~------------------~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~  146 (336)
T 3lpz_A           88 AGQRVDG--ASRGKLLGCLRLFQPG------------------EPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLY  146 (336)
T ss_dssp             HTCCCCH--HHHHHHHHHHTTSCTT------------------CHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHH
T ss_pred             cCCCCCH--HHHHHHHHHHHhCCCC------------------CcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence            5  3332  4555555555544321                  111 1223334443333222 2334446778888888


Q ss_pred             HHhcCHHHHHHHHH-----------HHH-HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc----CCC-
Q 022992          163 AELEQYHKSIEIYE-----------EIA-RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM----DPT-  225 (289)
Q Consensus       163 ~~~g~~~~A~~~~~-----------~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~----~~~-  225 (289)
                      .+-++|.+|..+|-           +.+ .......  .....-+..++.+.|++.++...|..+++.+++.    .+. 
T Consensus       147 ~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L  224 (336)
T 3lpz_A          147 VEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGL  224 (336)
T ss_dssp             HHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCc
Confidence            88888888877651           111 1111111  1122233456678899999999999988887642    232 


Q ss_pred             --------------CCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCch-hHHHHHHHHHHh
Q 022992          226 --------------FSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDP-WKTTLLLRVKEK  277 (289)
Q Consensus       226 --------------~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~-~~~~~~~~~~~~  277 (289)
                                    |+..+--.++.-|+.+++.+.++.|......|.....-|| ....-+.+|.+.
T Consensus       225 ~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~  291 (336)
T 3lpz_A          225 TVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEM  291 (336)
T ss_dssp             CCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHH
T ss_pred             cccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence                          2334455688888899999999999999999998876677 777888888775

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.59  E-value=4e-08  Score=75.83  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=70.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C----------HHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           45 LAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        45 ~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~----------~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      ..+.|++|+.+|.+++++...      -+.++.+.|.++... +          +++|+.+|++|+.+.+..      +.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~   81 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DE   81 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HH
Confidence            345678888899998888543      256777788877655 3          569999999999997764      34


Q ss_pred             HHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhcc
Q 022992          114 YYKEIAELYESEH-----------NIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       114 ~l~~la~~~~~~g-----------~~~~A~~~y~~A~~~~~~~  145 (289)
                      ++.++|.+|..+|           ++++|+.+|++|+++-+..
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            8899999998774           8999999999999997753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.58  E-value=5.3e-07  Score=76.42  Aligned_cols=134  Identities=9%  Similarity=-0.065  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ++.-.-+.++...|++++|.+.|..+...     .+...  .....|.++.+. ++++|+.+++++...    .++....
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~  171 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVA-----GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAG  171 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHH
Confidence            33444467788899999999999877752     33333  445556666555 999999999866332    2444556


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      .+...+|.++..+|++++|+.+|++++.   ....+.....+...+|.++..+|+.++|...|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            7899999999999999999999999973   11113336678899999999999999999999999744

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=98.57  E-value=2.8e-05  Score=66.65  Aligned_cols=240  Identities=9%  Similarity=0.056  Sum_probs=159.6

Q ss_pred             HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--
Q 022992            9 EEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--   86 (289)
Q Consensus         9 ~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--   86 (289)
                      .+.+++-++....     |+|-+|.+.|.-...-|..++++++|++.....+..+-+.|....++.....+..+|.+.  
T Consensus        14 ~r~l~rl~~~I~~-----G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~   88 (312)
T 2wpv_A           14 AKTLQRFENKIKA-----GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV   88 (312)
T ss_dssp             HHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhc-----cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            3344444444442     799999999999999999999999999999999999888898888888777777888665  


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-cchHHHHHHHHHHHHHHh
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAEL  165 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~  165 (289)
                      .++  .+...+..+++.....                  ..+ .=..+..+|+.-..+.+. +.+-+..+..+|.++.+-
T Consensus        89 ~~~--~~~~~rl~~l~~~~p~------------------~~~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e  147 (312)
T 2wpv_A           89 KVD--DISVARLVRLIAELDP------------------SEP-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG  147 (312)
T ss_dssp             CCS--HHHHHHHHHHHTTCCT------------------TCT-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred             CCC--HHHHHHHHHHHHHCCC------------------CCc-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence            222  2233444444433221                  111 113455555555444332 445557788889999888


Q ss_pred             cCHHHHHHHHH-----HH------H-HHHhhc-cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC---------
Q 022992          166 EQYHKSIEIYE-----EI------A-RQSLNN-NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMD---------  223 (289)
Q Consensus       166 g~~~~A~~~~~-----~a------~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~---------  223 (289)
                      |++.+|..+|-     ..      + ...... ........-+..++.+.+++.|+...|..+|..+.+..         
T Consensus       148 ~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~  227 (312)
T 2wpv_A          148 DFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYE  227 (312)
T ss_dssp             TCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccc
Confidence            99988888662     11      1 111110 01111122234456778999999999999999886432         


Q ss_pred             ------CC---CCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHh
Q 022992          224 ------PT---FSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEK  277 (289)
Q Consensus       224 ------~~---~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~  277 (289)
                            ..   |+..+--.++.-|+.++..++++.|+...+.|...-.   .....+.+|.+.
T Consensus       228 ~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~---~~~~~L~~Ig~~  287 (312)
T 2wpv_A          228 KIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ---AYKSELEFLGQE  287 (312)
T ss_dssp             EEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH---HTHHHHHHHHHH
T ss_pred             cccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence                  11   2345667888888999988899999999999887743   445677777765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.56  E-value=8.9e-08  Score=73.90  Aligned_cols=85  Identities=7%  Similarity=0.019  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNI----------EQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~----------~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      .+++|+.++++|+++.+..      +..+.++|.++..++++          ++|+..|++|+++.+..      ..++.
T Consensus        17 ~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~~   84 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHHH
Confidence            5789999999999997753      44889999999887764          59999999999997753      36889


Q ss_pred             HHHHHHHHhc-----------CHHHHHHHHHHHHHHHh
Q 022992          157 KVAQYAAELE-----------QYHKSIEIYEEIARQSL  183 (289)
Q Consensus       157 ~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~  183 (289)
                      ++|.+|..+|           ++++|+++|++++....
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            9999999875           89999999999986543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.56  E-value=7.5e-07  Score=61.08  Aligned_cols=84  Identities=15%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ..+.++..+|.++...|++++|+.+|++++++.+..      ..++..+|.++...|++++|+.+|++++.....     
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----   75 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----   75 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----
Confidence            456788899999999999999999999999876532      357889999999999999999999999754321     


Q ss_pred             cchhhHHHHHHHHHHcc
Q 022992          190 YGVKGHLLNAGICQLCK  206 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~  206 (289)
                        ....+.+++.++...
T Consensus        76 --~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           76 --NAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             --CHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhc
Confidence              123455666665543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.53  E-value=1.6e-07  Score=68.12  Aligned_cols=82  Identities=9%  Similarity=0.018  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCH
Q 022992           89 NEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQY  168 (289)
Q Consensus        89 ~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  168 (289)
                      ++|+.+|++++...+..      +.++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|++
T Consensus         2 ~~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~   69 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDR   69 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCH
Confidence            35788888888765532      4589999999999999999999999999986543      35789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 022992          169 HKSIEIYEEIARQS  182 (289)
Q Consensus       169 ~~A~~~~~~a~~~~  182 (289)
                      ++|+..|++++...
T Consensus        70 ~~A~~~~~~al~~~   83 (115)
T 2kat_A           70 AGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999997543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.51  E-value=4e-07  Score=62.48  Aligned_cols=84  Identities=19%  Similarity=0.347  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      ..+..+..+|.++... ++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++++.+..    
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----   76 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence            4566788889888776 9999999999999885532      4588999999999999999999999999986543    


Q ss_pred             hHHHHHHHHHHHHHHhc
Q 022992          150 SANQCKQKVAQYAAELE  166 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g  166 (289)
                        ..++..+|.++..+|
T Consensus        77 --~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 --AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHhcC
Confidence              356788888887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.46  E-value=6.8e-06  Score=70.70  Aligned_cols=226  Identities=9%  Similarity=-0.007  Sum_probs=150.1

Q ss_pred             HHHHHHHHHH--------------HHHHHHcC--CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHcc-CCHHHH
Q 022992           30 EDAADLFDKA--------------ANSFKLAK--SWDKAGATYVKLANCHLKLES-KHEAAQAYVDAAHCYKK-TSSNEA   91 (289)
Q Consensus        30 ~~A~~~~~~A--------------~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~-~~~aa~~~~~~a~~~~~-~~~~~A   91 (289)
                      ++|+.++.++              +.++...|  ++++++.++.+++....+.-. +..-..++..+...... .+++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            5677777776              34455677  999999999999987554321 11112222111111111 378999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC--
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE--QTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ--  167 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~--~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  167 (289)
                      +.++.++++..+++-.      ++..-+.++...|.++  ++++++.++++..+.+.      .++...+.++..+++  
T Consensus       130 L~~~~~~l~~~pkny~------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~------sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          130 FDILEAMLSSDPKNHH------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN------SAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             HHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHSSGGGC
T ss_pred             HHHHHHHHHhCCCCHH------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhccccc
Confidence            9999999998877654      8999999999999988  99999999999866543      477888888888887  


Q ss_pred             ----HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC-HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 022992          168 ----YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-VVAITNALERYQDMDPTFSGTREYRLLSDIAASM  242 (289)
Q Consensus       168 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd-~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~  242 (289)
                          ++++++++.+++...+.+       ..+++..+.+....|. .........++.++.+.-..+.  ..+.-+++.+
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~al~~la~~~  268 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS--FALETLAKIY  268 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH--HHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH--HHHHHHHHHH
Confidence                999999999998654332       2234444444444444 3334445555544331111222  3455566666


Q ss_pred             c-ccCHHHHHHHHHhccccCC-CchhHHHHHHHHHHhcc
Q 022992          243 D-EEDIAKFTDVVKEFDSMTP-LDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       243 ~-~~d~~~~~~al~~~~~~~~-~d~~~~~~~~~~~~~~~  279 (289)
                      . .|+   .++|++.|+.+.. +||...+-|.-..+.|+
T Consensus       269 ~~~~~---~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~  304 (306)
T 3dra_A          269 TQQKK---YNESRTVYDLLKSKYNPIRSNFWDYQISKLT  304 (306)
T ss_dssp             HHTTC---HHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred             HccCC---HHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence            4 444   4667777888775 89999999888777765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.44  E-value=1.3e-06  Score=61.93  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ++..+|.+|... ++++|+.+|++++++.+....      ++..+|.++...|++++|+.+|++++++.+.
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            344444444333 445555555555444333221      4444555555445555555555555544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.43  E-value=1.7e-06  Score=61.27  Aligned_cols=65  Identities=11%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      +.++..+|.++...|++++|+.+|++++++.+...      .++..+|.++..+|++++|+..|++++...
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45789999999999999999999999999876543      478999999999999999999999998543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.41  E-value=8.8e-07  Score=64.10  Aligned_cols=85  Identities=8%  Similarity=0.019  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHH
Q 022992           51 KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIE  129 (289)
Q Consensus        51 ~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~  129 (289)
                      +++..|.++++....      ....+..+|.+|... ++++|+.+|++++.+.+..      ..++..+|.++...|+++
T Consensus         3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHH
Confidence            456677777765332      245788899999777 9999999999999986543      458899999999999999


Q ss_pred             HHHHHHHHHHHHHhccCc
Q 022992          130 QTIVFFEKAADMFQNEEV  147 (289)
Q Consensus       130 ~A~~~y~~A~~~~~~~~~  147 (289)
                      +|+.+|++++++.+..+.
T Consensus        71 ~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           71 GARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            999999999999887654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.17  E-value=2e-05  Score=56.26  Aligned_cols=70  Identities=11%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .-...||..+...++|..|+.+|++|+...+.... ......++..+|.++.++|++++|+.++++++...
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            34568899999999999999999999998865432 24566899999999999999999999999998543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.15  E-value=0.00023  Score=61.74  Aligned_cols=196  Identities=9%  Similarity=0.040  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 022992           49 WDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE  125 (289)
Q Consensus        49 ~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~  125 (289)
                      +++++.++..++....+  +    -.++..-+-+....   ++++++.++.++++..+++..      +|..-+.++...
T Consensus        90 l~~EL~~~~~~L~~~PK--n----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK--S----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------CWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh
Confidence            56777777777765433  2    22333334444443   589999999999999887765      888889998888


Q ss_pred             CC-HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHHHhhcccccc
Q 022992          126 HN-IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL--------------EQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       126 g~-~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      |. ++++++++.++++..+.+.      .++...+.++..+              +.++++++++.+++...+++.    
T Consensus       158 ~~~~~eel~~~~~~I~~~p~N~------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~----  227 (331)
T 3dss_A          158 AVAPAEELAFTDSLITRNFSNY------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ----  227 (331)
T ss_dssp             TCCHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH----
T ss_pred             CcCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH----
Confidence            88 5999999999999876543      4677888877776              679999999999986654431    


Q ss_pred             chhhHH-HHHHHHHHccC----------CHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH---HHHc-ccCHHHHHHHHH
Q 022992          191 GVKGHL-LNAGICQLCKG----------DVVAITNALERYQDMDPTFSGTREYRLLSDIA---ASMD-EEDIAKFTDVVK  255 (289)
Q Consensus       191 ~~~~~~-~~~~~~~l~~g----------d~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~---~a~~-~~d~~~~~~al~  255 (289)
                         ..+ +..+++....|          -+.++.+.+++.+++.|...     ..+..++   .... .+   ...++..
T Consensus       228 ---SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~-----w~l~~~~~~~~~~~~~~---~~~~~~~  296 (331)
T 3dss_A          228 ---SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK-----WCLLTIILLMRALDPLL---YEKETLQ  296 (331)
T ss_dssp             ---HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHCTTT---THHHHHH
T ss_pred             ---HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc-----hHHHHHHHHHHhhcccc---cHHHHHH
Confidence               122 23344433333          36788899999999888641     1122222   1222 22   2334555


Q ss_pred             hccccCCCchhHHHHHHHHHHh
Q 022992          256 EFDSMTPLDPWKTTLLLRVKEK  277 (289)
Q Consensus       256 ~~~~~~~~d~~~~~~~~~~~~~  277 (289)
                      .+..+..+||.-..-+.-+..+
T Consensus       297 ~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          297 YFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHhCcchhhHHHHHHHH
Confidence            5556666777666555554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.11  E-value=0.0001  Score=63.16  Aligned_cols=196  Identities=13%  Similarity=0.101  Sum_probs=123.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 022992           37 DKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYY  115 (289)
Q Consensus        37 ~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l  115 (289)
                      .-+|.++...|++++|+..+.+.+..    +...+...++..++.++... +++.|...+++.....+..  ....-.++
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~l  177 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEMI  177 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHHH
Confidence            37789999999999999999987543    11123455677788888776 9999999999876654310  00111233


Q ss_pred             HHHHHH--HHhcC--CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh--cc-cc
Q 022992          116 KEIAEL--YESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN--NN-LL  188 (289)
Q Consensus       116 ~~la~~--~~~~g--~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~-~~  188 (289)
                      ..++..  ....|  ++.+|...|++..+.++..    .....+.+   ++..+|++++|.+.++.+......  +. ..
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~  250 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENA  250 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence            444433  33334  8999999999987655420    11123333   899999999999999976533211  00 00


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhcc
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFD  258 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~  258 (289)
                      .......+.+++.+....|+  .|.+.+++..++.|.++      ++..+-.     --..|.+++..|.
T Consensus       251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp------~i~d~~~-----k~~~Fd~~~~ky~  307 (310)
T 3mv2_B          251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA------FIKHHQE-----IDAKFDELVRKYD  307 (310)
T ss_dssp             HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH------HHHHHHH-----HHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh------HHHHHHH-----HHHHHHHHHHHhc
Confidence            01233455566666666787  68899999888888764      2222211     1356777777764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.08  E-value=0.00075  Score=57.88  Aligned_cols=174  Identities=9%  Similarity=-0.022  Sum_probs=124.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHH
Q 022992           26 GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKK---TSSNEAISCLEQAVNMF  102 (289)
Q Consensus        26 ~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~---~~~~~A~~~~~~A~~~~  102 (289)
                      +++|.++...+..   +.......++|+.++.+++.+....      ..+++.-+.+...   .++++++.++.+++.+.
T Consensus        29 ~~~y~~~~~~~~a---~~~~~e~s~~aL~~t~~~L~~nP~~------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n   99 (306)
T 3dra_A           29 DEDYKQIMGLLLA---LMKAEEYSERALHITELGINELASH------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN   99 (306)
T ss_dssp             CHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHCcHH------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence            3555555554443   2233334478999999999885432      2344444555432   38999999999999998


Q ss_pred             HhcCCHHHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH--HHHH
Q 022992          103 CDIGRLSMAARYYKEIAELY----ESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--KSIE  173 (289)
Q Consensus       103 ~~~g~~~~~a~~l~~la~~~----~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~  173 (289)
                      ++.-.      +++.-+.++    ...   +++++++.++.++++..+++-      .++..-+.++..+|.++  ++++
T Consensus       100 Pk~y~------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny------~aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A          100 EKNYQ------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH------HVWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             TTCCH------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             cccHH------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcccChHHHHH
Confidence            88776      677777777    555   789999999999999877643      57888899999999998  9999


Q ss_pred             HHHHHHHHHhhccccccchhhHHHHHHHHHHccCC------HHHHHHHHHHHhhcCCCCC
Q 022992          174 IYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD------VVAITNALERYQDMDPTFS  227 (289)
Q Consensus       174 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd------~~~A~~~~~~~~~~~~~~~  227 (289)
                      ++.+++...+.+       ..++...+.+....|.      +.++.+.+.+++.++|...
T Consensus       168 ~~~~~i~~d~~N-------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          168 FVDKVIDTDLKN-------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             HHHHHHHHCTTC-------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHhCCCC-------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence            999998553222       2345555555555555      7888999999988887643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.04  E-value=6.2e-06  Score=57.62  Aligned_cols=61  Identities=10%  Similarity=0.105  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ-CKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .+.|..+...|++++|+..|+++++..+..      .. ++..+|.++..+|++++|+..|++++...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456778888899999999999999875542      24 78899999999999999999999998543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.99  E-value=7.2e-05  Score=69.87  Aligned_cols=158  Identities=8%  Similarity=0.014  Sum_probs=116.5

Q ss_pred             HcCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-C----------HHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           45 LAKSW-DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-S----------SNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        45 ~~g~~-~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~----------~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..|++ ++|+..+.+++++..+.      ..+|..-+.+.... +          ++++++++.+++...++.-.     
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~-----  108 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDF------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----  108 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----
T ss_pred             HcCCCCHHHHHHHHHHHHHCchh------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----
Confidence            44544 67799999998875432      23444445555444 3          89999999999998876554     


Q ss_pred             HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhhccccc
Q 022992          113 RYYKEIAELYESEH--NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       113 ~~l~~la~~~~~~g--~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                       +|..-+.++...+  ++++++.++.+++++.+.+.      .++..-+.+...+| .++++++++.+++...+.+    
T Consensus       109 -aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~------~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n----  177 (567)
T 1dce_A          109 -TWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----  177 (567)
T ss_dssp             -HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC----
T ss_pred             -HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC----
Confidence             8999999999999  66999999999999877643      57888999999999 9999999999997432221    


Q ss_pred             cchhhHHHHHHHHHHc--------------cCCHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLC--------------KGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~--------------~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                         ..++...+.+...              .+.++++.+.+.+++.++|...
T Consensus       178 ---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          178 ---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             ---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             ---ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence               2344444444332              1457889999999999888754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.95  E-value=0.0018  Score=61.55  Aligned_cols=203  Identities=8%  Similarity=-0.040  Sum_probs=128.2

Q ss_pred             HHHHHcCCHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc--------C-C--
Q 022992           41 NSFKLAKSWDKAG-ATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI--------G-R--  107 (289)
Q Consensus        41 ~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~--------g-~--  107 (289)
                      ......|+.++|. ..|.+|......  +    ...+...+.+.... ++++|.+.|++++......        . +  
T Consensus       351 ~~~~~~~~~~~a~r~il~rAi~~~P~--s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~  424 (679)
T 4e6h_A          351 NYQGEKNTDSTVITKYLKLGQQCIPN--S----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES  424 (679)
T ss_dssp             HHHHHHSCCTTHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence            3455677778886 888888765332  1    23445556666555 8999999999999875321        1 1  


Q ss_pred             -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q 022992          108 -----LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE-QYHKSIEIYEEIARQ  181 (289)
Q Consensus       108 -----~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~  181 (289)
                           ......+|...+.+....|+.+.|...|.+|+...+...     ..++...+.+-...+ +++.|.++|++++..
T Consensus       425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                 113456788888888888999999999999987632211     235556666665654 599999999999865


Q ss_pred             HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHH-HHHHHHHHHH-cccCHHHHHHHHHhccc
Q 022992          182 SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREY-RLLSDIAASM-DEEDIAKFTDVVKEFDS  259 (289)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~-~~l~~l~~a~-~~~d~~~~~~al~~~~~  259 (289)
                      ....       ...+...+......|+...|+..|++++...+.   .... .+....+.-- ..|+.+......+.+..
T Consensus       500 ~p~~-------~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          500 FATD-------GEYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             CCCc-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4322       122333333344578999999999999875542   1122 2222222211 36777666666655555


Q ss_pred             cCCCc
Q 022992          260 MTPLD  264 (289)
Q Consensus       260 ~~~~d  264 (289)
                      ..+-+
T Consensus       570 ~~P~~  574 (679)
T 4e6h_A          570 KFPEV  574 (679)
T ss_dssp             HSTTC
T ss_pred             hCCCC
Confidence            54443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.94  E-value=0.00033  Score=60.02  Aligned_cols=178  Identities=9%  Similarity=0.089  Sum_probs=111.5

Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQC  154 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~  154 (289)
                      +..+|.++... ++++|+.++.+.+..    +.......+...++.++...|+++.|.+.+++..+..+..  ....-.+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~~  176 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchHH
Confidence            35678888665 999999999987432    2113455678888999999999999999999987764410  0001134


Q ss_pred             HHHHHHH--HHHhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC--
Q 022992          155 KQKVAQY--AAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG--  228 (289)
Q Consensus       155 ~~~l~~~--~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~--  228 (289)
                      +..++..  ....|  ++.+|..+|+++....   +  .+.....+++   +++.+|++++|...++...+..|.+..  
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p--~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTF---P--TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---C--SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---C--CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence            5566544  55556  9999999999975321   1  1111223333   888999999999999977666544311  


Q ss_pred             ---chHHHHHHHHHH-HHcccCHHHHHHHHHhccccCCCchhHHH
Q 022992          229 ---TREYRLLSDIAA-SMDEEDIAKFTDVVKEFDSMTPLDPWKTT  269 (289)
Q Consensus       229 ---~~e~~~l~~l~~-a~~~~d~~~~~~al~~~~~~~~~d~~~~~  269 (289)
                         .....++.+++. .+..|+  ...+.+.....+.+-.||-..
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence               223455645543 333555  233444444555555555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.93  E-value=0.00037  Score=60.41  Aligned_cols=212  Identities=8%  Similarity=0.034  Sum_probs=133.2

Q ss_pred             HHcCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----------CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           44 KLAKSWD-KAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        44 ~~~g~~~-~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----------~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      +..|.++ +|+.++.+++.+..+.    -.+..+  -+.+....           .+++++.++..++...+++-.    
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~----ytaWn~--Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~----  109 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDF----ATLWNC--RREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----  109 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTC----HHHHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh----HHHHHH--HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH----
Confidence            3456665 7788888888764321    112222  22222211           267889999999888776654    


Q ss_pred             HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhcccc
Q 022992          112 ARYYKEIAELYESEHN--IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ-YHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       112 a~~l~~la~~~~~~g~--~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~  188 (289)
                        +|..-+.++...++  +++++.++.+++++.+.+.      .++..-+.+....|. ++++++++.+++...+.+   
T Consensus       110 --aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N---  178 (331)
T 3dss_A          110 --TWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---  178 (331)
T ss_dssp             --HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC---
T ss_pred             --HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC---
Confidence              88888899988884  8999999999999877653      578888888889998 699999999998553322   


Q ss_pred             ccchhhHHHHHHHHHHcc--------------CCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-ccc-----CHH
Q 022992          189 KYGVKGHLLNAGICQLCK--------------GDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEE-----DIA  248 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~--------------gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~-----d~~  248 (289)
                       +   .++...+.+....              +.+.++.+.+..++.++|.....-  ..+..++... ...     +.+
T Consensus       179 -~---SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW--~Y~r~ll~~~~~~~~~~~~~~~  252 (331)
T 3dss_A          179 -Y---SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW--FYHRWLLGAGSGRCELSVEKST  252 (331)
T ss_dssp             -H---HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH--HHHHHHHHSSSCGGGCCHHHHH
T ss_pred             -H---HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHhccCccccchHHHH
Confidence             2   2333333332222              346788999999998887753221  1244444322 111     135


Q ss_pred             HHHHHHHhccccCCCch---hHHHHHHHHHHhccccc
Q 022992          249 KFTDVVKEFDSMTPLDP---WKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       249 ~~~~al~~~~~~~~~d~---~~~~~~~~~~~~~~~~~  282 (289)
                      .++++++.+..+-.++|   |+-..+..+...+.+.+
T Consensus       253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~  289 (331)
T 3dss_A          253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL  289 (331)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccc
Confidence            67777777777766555   44333344444444333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.91  E-value=0.00062  Score=52.34  Aligned_cols=103  Identities=12%  Similarity=0.007  Sum_probs=81.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc----
Q 022992           76 YVDAAHCYKKTSSNEAISCLEQAVNMFCDIGR---LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT----  148 (289)
Q Consensus        76 ~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~----  148 (289)
                      +.++-.++....++.|+.....++.+.....+   +...+.++..+|..+...++|..|...|++|+.+.+.....    
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~  103 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR  103 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            34444555555889999999998888765544   78889999999999999999999999999999887643211    


Q ss_pred             ---------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 022992          149 ---------------TSANQCKQKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       149 ---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                                     ....++..+++.|+.++|++++|+..++.+
T Consensus       104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                           223478899999999999999999998876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.90  E-value=6.8e-05  Score=52.12  Aligned_cols=88  Identities=11%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKG-HLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL  234 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~  234 (289)
                      .+.|.++...|++++|+..|++++.....       ... .++.+|.++...|++.+|...|++++.+.|.....   ..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~   73 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV-------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL---QA   73 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH---HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HH
Confidence            56788999999999999999999854321       223 67888999999999999999999999988875421   11


Q ss_pred             HHHHHHHHcccCHHHHHHHHHhccccCCCch
Q 022992          235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDP  265 (289)
Q Consensus       235 l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~  265 (289)
                      .            ..+.+++..|+.+...+|
T Consensus        74 ~------------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           74 R------------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             H------------HHHHHHHHHHCCTTHHHH
T ss_pred             H------------HHHHHHHHHHHHHhccCc
Confidence            0            345556666666655544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.90  E-value=0.0027  Score=57.34  Aligned_cols=204  Identities=10%  Similarity=0.050  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCC
Q 022992            8 AEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS   87 (289)
Q Consensus         8 a~~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~   87 (289)
                      ..+.+.+|+++.+      +++.+|++.+-..-.--+..++...........+.+....+++.........+.  .+++.
T Consensus        17 ~~~~~~~~~~l~~------~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls--kkr~q   88 (445)
T 4b4t_P           17 LKEEFPKIDSLAQ------NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS--KKHGQ   88 (445)
T ss_dssp             -----------CH------HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH--TTTTT
T ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHhhh
Confidence            4456666666544      477777776654444444445555555556666666666666654333222211  12223


Q ss_pred             HHHHHHHH-HHHHHHHHhc--------------------CCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992           88 SNEAISCL-EQAVNMFCDI--------------------GRL---SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus        88 ~~~A~~~~-~~A~~~~~~~--------------------g~~---~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      ...|+... +.++......                    |..   ..-+++...++.++...|++.+|...++....-..
T Consensus        89 lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~  168 (445)
T 4b4t_P           89 LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY  168 (445)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            33333322 2222222111                    111   23577888999999999999999999988753333


Q ss_pred             ccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHH
Q 022992          144 NEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERY  219 (289)
Q Consensus       144 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~  219 (289)
                      ...+.....+++.....++...++|..|..++.++............--..++...|..+...+++..|-.+|...
T Consensus       169 ~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          169 GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3334455667888889999999999999999999853322221111011123334466666677776665555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.87  E-value=0.00018  Score=67.22  Aligned_cols=176  Identities=7%  Similarity=-0.005  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHN----------IEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~----------~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      ..++|++++.+++.+.++.-.      +|..-+.++...|+          +++++.++.++++..++.-      .++.
T Consensus        44 ~~eeal~~~~~~l~~nP~~~t------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y------~aW~  111 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFAT------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY------GTWH  111 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH------HHHH
T ss_pred             CCHHHHHHHHHHHHHCchhHH------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH------HHHH
Confidence            457899999999998776554      78888888888877          9999999999999877643      5788


Q ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccC-CHHHHHHHHHHHhhcCCCCCCchHHH
Q 022992          157 KVAQYAAELE--QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKG-DVVAITNALERYQDMDPTFSGTREYR  233 (289)
Q Consensus       157 ~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-d~~~A~~~~~~~~~~~~~~~~~~e~~  233 (289)
                      .-+.++..+|  +++++++++.+++.....+       ..+|...+.+....| .++++.+.+.++++.+++...+-  .
T Consensus       112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW--~  182 (567)
T 1dce_A          112 HRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW--H  182 (567)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH--H
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH--H
Confidence            8999999999  7799999999998654222       234555666656677 78888999888887776643221  1


Q ss_pred             HHHHHHHHH-cc--------cCHHHHHHHHHhccccCCCchhHHHHHHHHHHhcccccc
Q 022992          234 LLSDIAASM-DE--------EDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKEL  283 (289)
Q Consensus       234 ~l~~l~~a~-~~--------~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  283 (289)
                      ....++... ..        -+.+.++++++.+.....++|.+...|.-.+-.+...+-
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            112222222 11        124778888888888888888888888887777765443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.84  E-value=0.0002  Score=62.62  Aligned_cols=142  Identities=10%  Similarity=0.030  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHH
Q 022992           27 SKYEDAADLFDKAANSFKL--AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAV   99 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~   99 (289)
                      |.-..|.++|-++-..+..  ..++.+|+.+|++|+++-...      +.++..++.+|...     .....+.-..+++
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF------TYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            5557889999988665543  334689999999999985433      22333334443211     1122333334444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          100 NMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       100 ~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ............+.++.-++..+...|++++|+.++++|+.+-+      . ...+..+|.++...|++++|++.|++++
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM------S-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            43333333345677888888887767999999999999999841      1 2467889999999999999999999998


Q ss_pred             HH
Q 022992          180 RQ  181 (289)
Q Consensus       180 ~~  181 (289)
                      ..
T Consensus       338 rL  339 (372)
T 3ly7_A          338 NL  339 (372)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.78  E-value=0.00038  Score=60.70  Aligned_cols=174  Identities=7%  Similarity=-0.015  Sum_probs=126.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Q 022992           25 FGSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMF  102 (289)
Q Consensus        25 ~~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~  102 (289)
                      ++++|..+...+..   +....+..++|+.++.+++.+..+.      ..+++.-+.+....  ++++++.++.+++...
T Consensus        49 y~~~y~~~~~~~r~---~~~~~e~se~AL~lt~~~L~~nP~~------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n  119 (349)
T 3q7a_A           49 YSEEYKDAMDYFRA---IAAKEEKSERALELTEIIVRMNPAH------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN  119 (349)
T ss_dssp             CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             eCHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            35677777765544   3444556688999999999885432      23444455555444  6999999999999888


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH--------HHH
Q 022992          103 CDIGRLSMAARYYKEIAELYESE-H-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH--------KSI  172 (289)
Q Consensus       103 ~~~g~~~~~a~~l~~la~~~~~~-g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~  172 (289)
                      +++-.      ++..-+.++... + ++++++.++.++++..+++-      .++..-+.+...+|.++        +++
T Consensus       120 PKny~------aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy------~AW~~R~wvl~~l~~~~~~~~~~~~eEL  187 (349)
T 3q7a_A          120 LKSYQ------VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY------HTWAYLHWLYSHFSTLGRISEAQWGSEL  187 (349)
T ss_dssp             CCCHH------HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CCcHH------HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccccccchhhHHHHH
Confidence            77655      888888888887 7 89999999999998766542      57788888888888887        999


Q ss_pred             HHHHHHHHHHhhccccccchhhHHHHHHHHHHccCC-------HHHHHHHHHHHhhcCCCC
Q 022992          173 EIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGD-------VVAITNALERYQDMDPTF  226 (289)
Q Consensus       173 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd-------~~~A~~~~~~~~~~~~~~  226 (289)
                      +++.+++.....+       ..++...+.+....+.       +.++.+.+.+++.++|..
T Consensus       188 e~~~k~I~~dp~N-------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          188 DWCNEMLRVDGRN-------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             HHHHHHHHHCTTC-------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC-------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            9999998553322       2345555555555554       577888888888877764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.68  E-value=0.00041  Score=49.20  Aligned_cols=74  Identities=14%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      -...+|.++...|+|..|+..|+.++......+.........+..+|.|+..+|++..|...+++++.+.|...
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45689999999999999999999998554322211123345677889999999999999999999999888763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.63  E-value=0.0021  Score=61.22  Aligned_cols=184  Identities=9%  Similarity=0.060  Sum_probs=124.7

Q ss_pred             CCHHHHH-HHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHh--------cC-C-------HHHHHHH
Q 022992           27 SKYEDAA-DLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLK--------LE-S-------KHEAAQA   75 (289)
Q Consensus        27 ~~~~~A~-~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~--------~~-~-------~~~aa~~   75 (289)
                      ++.++|. +.|.+|              +.+....|+++.|...|++++.....        .. .       .......
T Consensus       357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            5556675 777666              34455789999999999999987531        10 0       0123345


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      +...+.+.++. +.+.|...|.+|+...+...     ..++...|.+-... ++++.|...|+++++.++...      .
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~------~  505 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG------E  505 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH------H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch------H
Confidence            66666666555 89999999999987622221     23566666665554 459999999999999987542      3


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .+...+.+....|+.+.|..+|++++.....    .......+.....--...|+...+.+..+++.+..|.
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~----~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISD----SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS----TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            5667888888899999999999999743211    0011222222222334569999999999999887765

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.46  E-value=0.0029  Score=55.36  Aligned_cols=126  Identities=14%  Similarity=-0.055  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYE----SEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~----~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      ++.+|+.+|++|+++.+....      ++..++.++.    ........+.-..+++............+.++.-++.++
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~  287 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTY------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA  287 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHH
Confidence            678999999999999775433      3333333332    111222233333444443222222233456778888888


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ...|++++|+..+++++...  +     . ...+...|.++...|+.++|.+.|+++..+.|..
T Consensus       288 l~~gd~d~A~~~l~rAl~Ln--~-----s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          288 LVKGKTDESYQAINTGIDLE--M-----S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC--C-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HhCCCHHHHHHHHHHHHhcC--C-----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            88899999999999998542  1     1 2234556888888999999999999999988764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.44  E-value=0.00055  Score=59.66  Aligned_cols=180  Identities=12%  Similarity=-0.025  Sum_probs=120.4

Q ss_pred             HHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCccchHHHHHHHHH
Q 022992           82 CYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVA  159 (289)
Q Consensus        82 ~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~  159 (289)
                      +.... ..++|++++.+++.+.++.-.      +++.-+.++...| ++++++.++.+++...++..      .+++.-+
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~yt------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny------~aW~hR~  130 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYT------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY------QVWHHRL  130 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH------HHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH------HHHHHHH
Confidence            33334 557899999999999876654      8888899999888 59999999999998877643      5788888


Q ss_pred             HHHHHh-c-CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHH--------HHHHHHHHHhhcCCCCCCc
Q 022992          160 QYAAEL-E-QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVV--------AITNALERYQDMDPTFSGT  229 (289)
Q Consensus       160 ~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~--------~A~~~~~~~~~~~~~~~~~  229 (289)
                      .++..+ + +++++++++.+++.....    .+   .++...+.+....|.+.        ++.+.+++.++.+++...+
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpk----Ny---~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SA  203 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPK----NY---HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSA  203 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTT----CH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHH
Confidence            888887 7 999999999998733211    11   23333333322233333        7888888888887764322


Q ss_pred             hHHHHHHHHHHHHc--ccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992          230 REYRLLSDIAASMD--EEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       230 ~e~~~l~~l~~a~~--~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~  282 (289)
                      --.  ...++....  .++.+.+.+++..+.....++|.+...+.-++-.|...+
T Consensus       204 W~~--R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          204 WGW--RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHH--HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHH--HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            111  111111111  134566788888888877788888887766655554433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.43  E-value=0.0014  Score=55.37  Aligned_cols=86  Identities=13%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE-----HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQY  161 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~-----g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~  161 (289)
                      ....|...+++|+++-+.    ...+.++..+|.+|...     |+.++|..+|++|+++.+...     ..++.-.|..
T Consensus       178 ~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~  248 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH
Confidence            467899999999999764    12345899999999985     999999999999999977431     2467888998


Q ss_pred             HHH-hcCHHHHHHHHHHHHHH
Q 022992          162 AAE-LEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       162 ~~~-~g~~~~A~~~~~~a~~~  181 (289)
                      ++. .|++++|.+++++++..
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHhcCCHHHHHHHHHHHHcC
Confidence            887 59999999999999854

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.39  E-value=0.038  Score=48.86  Aligned_cols=149  Identities=9%  Similarity=-0.005  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCH
Q 022992           31 DAADLFDKAANSFKL-AKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRL  108 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~  108 (289)
                      .++......-..+.. -+..+.-++....+++..++.+...---..-.++|.+|... ++.+|...+.+...-....++.
T Consensus        56 k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~  135 (394)
T 3txn_A           56 KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK  135 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence            334434333333322 35567778888888888887766654444555788888766 9999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Q 022992          109 SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA-ELEQYHKSIEIYEEIA  179 (289)
Q Consensus       109 ~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~  179 (289)
                      ...-.++..-..+|...+++.++-..|.+|..+.... .++...+.+...-|.++. ..++|.+|..+|-++.
T Consensus       136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            8888888888999999999999999999999887654 556667777788888899 8999999999998875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.38  E-value=0.0027  Score=48.30  Aligned_cols=99  Identities=8%  Similarity=0.060  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      ...+.+.|.+++..    +.  ...++.+++|.++++.+   ++++++.+++++....  .|   ....++++++++.+.
T Consensus        14 l~~~~~~y~~e~~~----~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p---~~~rd~lY~LAv~~~   82 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY   82 (152)
T ss_dssp             HHHHHHHHHHHHHT----TC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---cchHHHHHHHHHHHH
Confidence            34455566655432    22  23367899999999887   7779999999987532  01   123467788888899


Q ss_pred             ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992          205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA  240 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~  240 (289)
                      ..||+..|+++++..+++.|.+   .++..+..++.
T Consensus        83 kl~~Y~~A~~y~~~lL~ieP~n---~QA~~Lk~~ie  115 (152)
T 1pc2_A           83 RLKEYEKALKYVRGLLQTEPQN---NQAKELERLID  115 (152)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Confidence            9999999999999999988864   34444544443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.37  E-value=0.0055  Score=47.04  Aligned_cols=98  Identities=8%  Similarity=-0.054  Sum_probs=72.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccC---ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh---ccc------
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNEE---VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN---NNL------  187 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~------  187 (289)
                      ..+...|.|+.|+-....++.+.....   .+....+++..+|+.+...++|..|...|++++....-   .+.      
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~  107 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG  107 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence            333444999999999999998876543   35677889999999999999999999999999733210   100      


Q ss_pred             ---------cccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992          188 ---------LKYGVKGHLLNAGICQLCKGDVVAITNALE  217 (289)
Q Consensus       188 ---------~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~  217 (289)
                               ......+.-++++.||...++...|...++
T Consensus       108 ~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          108 NSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                     001122566889999999999998887754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.25  E-value=0.0014  Score=45.50  Aligned_cols=63  Identities=13%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          112 ARYYKEIAELYESEHN---IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       112 a~~l~~la~~~~~~g~---~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      +..+..+|.++...++   .++|..++++|+.+.+...      .++..+|.++...|+|++|+.+|++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3566777777754444   7999999999999876542      5788899999999999999999999974

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00056  Score=62.24  Aligned_cols=221  Identities=13%  Similarity=0.082  Sum_probs=110.6

Q ss_pred             cCCHHHHHHHHHHHH--HHHHhcCC---HHHHHHHHHHHHHHHccC-CHHH----------HHHHHHHHHHHHHhcCCHH
Q 022992           46 AKSWDKAGATYVKLA--NCHLKLES---KHEAAQAYVDAAHCYKKT-SSNE----------AISCLEQAVNMFCDIGRLS  109 (289)
Q Consensus        46 ~g~~~~A~~~~~~a~--~~~~~~~~---~~~aa~~~~~~a~~~~~~-~~~~----------A~~~~~~A~~~~~~~g~~~  109 (289)
                      .++++++.++-....  +.....+.   ..-+|+.|.-.+.++... ....          -...+..++....-..|..
T Consensus       149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~  228 (523)
T 4b4t_S          149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE  228 (523)
T ss_dssp             ------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc
Confidence            456777777665554  22222221   122455555545555433 2221          1222333333333345667


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      +.+-+++.+=..|...+.|++|..+..++.  |+.. .+.......+.-+|.++.-.++|.+|.+++..+...+..+.. 
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~-  305 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK-  305 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS-
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh-
Confidence            888999999999999999999999999985  5543 233445677888999999999999999999998744332211 


Q ss_pred             ccchh-hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHHhccccCCCchhH
Q 022992          189 KYGVK-GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK  267 (289)
Q Consensus       189 ~~~~~-~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~  267 (289)
                      ..+.. ..+-.+..|.+.+|+.+. +..|..       +.-.....-...|..++..||+..|..++..+...=.-| -+
T Consensus       306 a~gfr~~a~K~lI~V~LLlG~iP~-r~lf~q-------~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~D-gt  376 (523)
T 4b4t_S          306 SLGFLQQSNKLHCCIQLLMGDIPE-LSFFHQ-------SNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKD-DT  376 (523)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTCCCC-HHHHTT-------TSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHT-TC
T ss_pred             hhhHHHHHHHHHHhHHhhcCCCCC-hHHhhc-------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccC-Ch
Confidence            11111 122234566667788654 233321       111111122345788999999999999999876653223 22


Q ss_pred             HHHHHHHHHhc
Q 022992          268 TTLLLRVKEKL  278 (289)
Q Consensus       268 ~~~~~~~~~~~  278 (289)
                      -.++.|++.++
T Consensus       377 y~LI~rLr~~v  387 (523)
T 4b4t_S          377 YQLCVRLRSNV  387 (523)
T ss_dssp             THHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            25666665554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.05  E-value=0.029  Score=51.32  Aligned_cols=167  Identities=9%  Similarity=0.021  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----------CHHHHHHHHHHHHHHHHh
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----------SSNEAISCLEQAVNMFCD  104 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----------~~~~A~~~~~~A~~~~~~  104 (289)
                      .+...-..|.+.|++++|...|.++.+.--..     -..+|+.+-.++...          ++++|.+.|++-..    
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-----d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----   98 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-----SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----   98 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-----CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----
Confidence            35566778889999999999999887542111     133566666666432          24566666554322    


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      .|-. --..+++.+-..+...|++++|.+.|++..+    .|-.+.. .+++.+-..+.+.|++++|.++|++.......
T Consensus        99 ~G~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A           99 DKVV-PNEATFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQPRL-RSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             TTCC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             hCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            2211 1134677777888888999999999987654    2322222 46888889999999999999999998643222


Q ss_pred             ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhc
Q 022992          185 NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDM  222 (289)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~  222 (289)
                      .      ....|..+..++...|+.++|.+.|++..+.
T Consensus       173 P------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          173 P------EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            1      1123444556677889999999999987653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.97  E-value=0.098  Score=44.07  Aligned_cols=90  Identities=14%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAEL-----EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGI  201 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  201 (289)
                      ....|...+++|+++.+..    ....++..+|.+|...     |+.++|.++|++++....+..      ...++..+.
T Consensus       178 ~l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~------id~~v~YA~  247 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD------PDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC------SHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC------chHHHHHHH
Confidence            3689999999999997752    1235889999999985     999999999999986643211      111222333


Q ss_pred             HHHc-cCCHHHHHHHHHHHhhcCCCC
Q 022992          202 CQLC-KGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       202 ~~l~-~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      .+.. .||...|...+++++...++.
T Consensus       248 ~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          248 ALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            3333 599999999999999988775

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.012  Score=52.85  Aligned_cols=184  Identities=13%  Similarity=0.109  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~  150 (289)
                      ...++..+|..|.+. ++++|.++|.++.+.....+.   ....+..+-.++...+++..+..++.+|-.+....+++..
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            345667788888665 999999999998876655554   2334444444444559999999999999999888877766


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHH------HHHHHhhcCC
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITN------ALERYQDMDP  224 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~------~~~~~~~~~~  224 (289)
                      .+......|.++...++|.+|...|-++..........  .........++|.+...+...-..      .+..+++   
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~--~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~---  281 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELT--SYESIATYASVTGLFTLERTDLKSKVIDSPELLSLIS---  281 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGG---
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchh--hHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhcc---
Confidence            66666677778888999999999998886433221111  111222233455554444332111      1111111   


Q ss_pred             CCCCchHHHHHHHHHHHHcccCH-HHHHHHHHhccccCCCchh
Q 022992          225 TFSGTREYRLLSDIAASMDEEDI-AKFTDVVKEFDSMTPLDPW  266 (289)
Q Consensus       225 ~~~~~~e~~~l~~l~~a~~~~d~-~~~~~al~~~~~~~~~d~~  266 (289)
                         ..++...+..++.++..++. ..+...+..++..-..|+.
T Consensus       282 ---~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~  321 (429)
T 4b4t_R          282 ---TTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKY  321 (429)
T ss_dssp             ---SHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTT
T ss_pred             ---CChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHH
Confidence               12334445566666655554 4455556666665555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.80  E-value=0.0051  Score=42.62  Aligned_cols=65  Identities=15%  Similarity=-0.033  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHc-cC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992           74 QAYVDAAHCYK-KT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus        74 ~~~~~~a~~~~-~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..+...|.++. ..   ..++|..++++|+.+.+.+.      +++..+|..+...|+|++|+.+|+++++..+.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34455555553 22   47999999999999987654      48999999999999999999999999987665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.78  E-value=0.014  Score=44.34  Aligned_cols=71  Identities=15%  Similarity=0.105  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      ...+..++|.++...+   +.++++.+++..++..    .+....+++..+|..+.++|+|++|.+++++++...+++
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            4567888888888876   5669999999988753    233456899999999999999999999999998665443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.64  E-value=0.2  Score=45.81  Aligned_cols=166  Identities=10%  Similarity=0.046  Sum_probs=104.2

Q ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhccC
Q 022992           77 VDAAHCYKK-TSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE---------HNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus        77 ~~~a~~~~~-~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~---------g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      ..+-..+-+ +++++|++.|++..+.-... +    ..+++.+=..+...         ++.+.|.+.|.+-..    .|
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~----~G  100 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-S----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV----DK  100 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-C----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----hC
Confidence            333444434 48888888888775431111 1    12333333333332         335677777766433    23


Q ss_pred             ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       147 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      -.+.. .+++.+...+.+.|++++|.++|++........      ....|..+...+...|+.+.|.+.|++..+.  ++
T Consensus       101 ~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~  171 (501)
T 4g26_A          101 VVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP------RLRSYGPALFGFCRKGDADKAYEVDAHMVES--EV  171 (501)
T ss_dssp             CCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC
T ss_pred             CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------ccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence            33333 478899999999999999999999986432211      1123444555677889999999999987652  22


Q ss_pred             CCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCC
Q 022992          227 SGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTP  262 (289)
Q Consensus       227 ~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~  262 (289)
                      .  +.......|+.++. .|+.+...+.+..++..+.
T Consensus       172 ~--Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          172 V--PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR  206 (501)
T ss_dssp             C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             C--CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence            2  23345677888774 8999888888888776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.61  E-value=0.1  Score=49.96  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQA   98 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A   98 (289)
                      ..+.++|..+.+. +++.|..+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3556677766555 777777776654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.2  Score=44.96  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH-HHHhcCCHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN-MFCDIGRLS  109 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~-~~~~~g~~~  109 (289)
                      -+.+-...+.+|...|++.+|.........=.....+...-...+.....+|... ++.+|...+.++.. .+.....+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            3556677889999999999999998877533333445556666666666666555 99999999999875 445556778


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQK  157 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~  157 (289)
                      ..+..+.-.|.++...++|.+|..+|..+.+.+...+++.....++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~  263 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH  263 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence            889999999999999999999999999999987766655443333333

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.18  Score=45.07  Aligned_cols=105  Identities=14%  Similarity=0.041  Sum_probs=84.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCY-KKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKE  117 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~-~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~  117 (289)
                      .|..|...|++++|.++|.++.+.....+..   ...+.....++ ...++..+..++.+|..+....+++...++...-
T Consensus       137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k---id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAK---IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCChHHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            4677888999999999999988766555543   33444444444 3449999999999999999999999999888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992          118 IAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus       118 la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      .|.++...++|..|..+|..+...+...+
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e  242 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATFTSIE  242 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999887765443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.59  E-value=0.39  Score=35.29  Aligned_cols=80  Identities=10%  Similarity=0.077  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCC
Q 022992          152 NQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSG  228 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~  228 (289)
                      .++.+++|..+++..   +..++|.++++.....      .....+.++-+++.|...||+..|+++.+..+++.|.   
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~---  110 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN---  110 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT---
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---
Confidence            467899999998775   5568999998886432      1124556777888899999999999999999988766   


Q ss_pred             chHHHHHHHHHH
Q 022992          229 TREYRLLSDIAA  240 (289)
Q Consensus       229 ~~e~~~l~~l~~  240 (289)
                      ...+..|..++.
T Consensus       111 N~QA~~Lk~~Ie  122 (134)
T 3o48_A          111 NKQVGALKSMVE  122 (134)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            456666666664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.58  E-value=0.22  Score=36.34  Aligned_cols=99  Identities=7%  Similarity=0.051  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhhccccccchhhHHHHHHHHHH
Q 022992          128 IEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHK---SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQL  204 (289)
Q Consensus       128 ~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (289)
                      ...+...|.+++..    +.  ...++.+++|+.++.......   +|.++++.....  .+   .....+++.+++.|.
T Consensus        17 l~~~~~~y~~e~~~----~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p---~~~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA----GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK---EEQRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHH----SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc----CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc---chHHHHHHHHHHHHH
Confidence            34455566655442    22  223678999999998875555   999999876321  01   123456777888899


Q ss_pred             ccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 022992          205 CKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAA  240 (289)
Q Consensus       205 ~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~  240 (289)
                      ..|++..|+++++..+++.|.   ..++..|..++.
T Consensus        86 klg~Y~~A~~~~~~lL~~eP~---n~QA~~Lk~~i~  118 (126)
T 1nzn_A           86 RLKEYEKALKYVRGLLQTEPQ---NNQAKELERLID  118 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence            999999999999999998876   446666666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.34  E-value=0.72  Score=41.90  Aligned_cols=22  Identities=9%  Similarity=-0.139  Sum_probs=17.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 022992           41 NSFKLAKSWDKAGATYVKLANC   62 (289)
Q Consensus        41 ~~~~~~g~~~~A~~~~~~a~~~   62 (289)
                      ..+...|+.++|...|++|+..
T Consensus       221 ~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          221 EYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Confidence            3455678999999999999887

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.12  E-value=0.44  Score=35.90  Aligned_cols=104  Identities=9%  Similarity=0.138  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHhccCccchHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          114 YYKEIAELYESEHNI------EQTIVFFEKAADMFQNEEVTTSAN--QCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       114 ~l~~la~~~~~~g~~------~~A~~~y~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      .|-......+..|++      ++-++.|++|+...+......+..  ..+.+.+.. ...++.++|...|+.++..  . 
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--h-   90 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--C-   90 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--C-
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--h-
Confidence            455555666666888      888999999999877654444443  344555544 5669999999999999753  1 


Q ss_pred             cccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          186 NLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                      .  .+  +..+...+.--+++|+...|++.+.+++.+.+.
T Consensus        91 K--kF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 K--KF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             T--TB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             H--HH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            1  22  333444444446789999999999999886544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.05  E-value=0.69  Score=34.41  Aligned_cols=81  Identities=10%  Similarity=0.077  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          151 ANQCKQKVAQYAAELE---QYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ..++.++++++++...   +..+++.++++.....   +   ....+.++.+++.+...||+..|+++.+..+++.|.  
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~--  109 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---E---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN--  109 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---C---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC--
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---c---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--
Confidence            4468899999999875   5567999999886421   1   134556777888899999999999999999998876  


Q ss_pred             CchHHHHHHHHHH
Q 022992          228 GTREYRLLSDIAA  240 (289)
Q Consensus       228 ~~~e~~~l~~l~~  240 (289)
                       ..++..|..++.
T Consensus       110 -n~QA~~Lk~~Ie  121 (144)
T 1y8m_A          110 -NKQVGALKSMVE  121 (144)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHH
Confidence             445666666554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.82  E-value=1.7  Score=37.26  Aligned_cols=152  Identities=9%  Similarity=0.100  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHh
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKTS--SNEAISCLEQAVNMFCD  104 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~--~~~A~~~~~~A~~~~~~  104 (289)
                      ++|++|+++....+..+...|++..+.+.-.-.++++.+.+-+... ....++..++....  -.+=..+..+|+.-..+
T Consensus        49 k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~  127 (336)
T 3lpz_A           49 GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK  127 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999977633221 46677788877651  12335566666665555


Q ss_pred             cC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----H--------HHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992          105 IG-RLSMAARYYKEIAELYESEHNIEQTIVFFEK----A--------ADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus       105 ~g-~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~----A--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      .| .+.+-......+|..+.+.+++.+|..+|--    +        ++.+... .+........+..--|..+++...|
T Consensus       128 ~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~-~~~e~dlfiaRaVL~yL~l~n~~~A  206 (336)
T 3lpz_A          128 FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD-ESHTAPLYCARAVLPYLLVANVRAA  206 (336)
T ss_dssp             HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS-CGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhCCHHHH
Confidence            43 3445556778899999888999999888731    1        1111222 2333333344455566778999999


Q ss_pred             HHHHHHHHH
Q 022992          172 IEIYEEIAR  180 (289)
Q Consensus       172 ~~~~~~a~~  180 (289)
                      -..+.....
T Consensus       207 ~~~~~~f~~  215 (336)
T 3lpz_A          207 NTAYRIFTS  215 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.74  E-value=0.34  Score=36.52  Aligned_cols=85  Identities=19%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhc
Q 022992           89 NEAISCLEQAVNMFCD--IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELE  166 (289)
Q Consensus        89 ~~A~~~~~~A~~~~~~--~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  166 (289)
                      ++-++.|++|+...+-  ......-+..|.+.|... ..+|++.|.+.|+.++.+.    ...  +.++...|.+-.+.|
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~~h----KkF--AKiwi~~AqFEiRqg  108 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARANC----KKF--AFVHISFAQFELSQG  108 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHHHC----TTB--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHh----HHH--HHHHHHHHHHHHHcc
Confidence            5566777777766543  456677889999999774 5599999999999999972    222  678899999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 022992          167 QYHKSIEIYEEIAR  180 (289)
Q Consensus       167 ~~~~A~~~~~~a~~  180 (289)
                      +...|.+++.+++.
T Consensus       109 nl~kARkILg~AiG  122 (161)
T 4h7y_A          109 NVKKSKQLLQKAVE  122 (161)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc
Confidence            99999999999973

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.45  E-value=2  Score=36.47  Aligned_cols=129  Identities=13%  Similarity=0.039  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992           88 SNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (289)
Q Consensus        88 ~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (289)
                      +=+|.+.|+....-|.+.+++..+...+...+..+.+.|++..|.++-.--++.+++.+.+... ....++..++.....
T Consensus        29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~-~~~~rl~~l~~~~p~  107 (312)
T 2wpv_A           29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD-ISVARLVRLIAELDP  107 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH-HHHHHHHHHHTTCCT
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCC
Confidence            3334444444444444444444444444444444444444444444444444444444333221 233344444433211


Q ss_pred             HHH-HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHH
Q 022992          168 YHK-SIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALE  217 (289)
Q Consensus       168 ~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~  217 (289)
                      -+. =.++.++++......+..+++.......+|..+...|++..|+..|-
T Consensus       108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            111 12333444433322222234444555566777777788887777663

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.40  E-value=0.16  Score=46.27  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .-+++..+|.+....+.++.|..+|.+|+.+.+..|      ..++.||.+....|+.-+|+-+|.+++
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~rsl  213 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHHHH
Confidence            456899999999999999999999999999999988      478999999999999999999988885

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.13  E-value=0.56  Score=34.16  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          112 ARYYKEIAELYESEHNIEQ---TIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~---A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      ..+..++|.++....+...   +|.+++..+.-    +.+...-+++..+|..+.++|+|++|..+++..+...+++
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            4567777777777655554   77777765442    2344566899999999999999999999999998665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.89  E-value=2.1  Score=40.68  Aligned_cols=102  Identities=10%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             HHcCCHHHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           44 KLAKSWDKAGA---------TYVKLANCHLKLESKHEAAQAYVDAAHCYKKTSSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        44 ~~~g~~~~A~~---------~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      ...|++++|.+         ...++++.+.+.++...|..+|.+++      +++.+..       ++...|+..    .
T Consensus       663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~-------l~~~~~~~~----~  725 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH------DLESLFL-------LHSSFNNKE----G  725 (814)
T ss_dssp             HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT------CHHHHHH-------HHHHTTCHH----H
T ss_pred             hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc------ChhhhHH-------HHHHcCCHH----H
Confidence            44567777733         44566666666677666666665543      3333322       233344332    2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                      +.+++.+....|+++.|...|.+.       |+       ......+|.+++++++|+.+-+
T Consensus       726 ~~~~~~~a~~~~~~~~A~~~~~~~-------g~-------~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          726 LVTLAKDAETTGKFNLAFNAYWIA-------GD-------IQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-------TC-------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHc-------CC-------HHHHHHHHHHcCChHHHHHHHH
Confidence            445555555556666665555432       11       1223344555556666655444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.15  E-value=0.18  Score=46.04  Aligned_cols=61  Identities=18%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAAD  140 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~  140 (289)
                      +++..+|.+.+.. .+..|..+|.+|..+.+..|.      .++.+|.+....|+.-+|+-+|.+++-
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            4677889998777 899999999999999999997      899999999999999999999999974

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.54  E-value=5.8  Score=35.82  Aligned_cols=47  Identities=11%  Similarity=0.059  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Q 022992           52 AGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDI  105 (289)
Q Consensus        52 A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~  105 (289)
                      ....|++++......      ...+...+..+... ++++|...|++|+.. +..
T Consensus       198 v~~~ye~al~~~p~~------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~  245 (493)
T 2uy1_A          198 MHFIHNYILDSFYYA------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG  245 (493)
T ss_dssp             HHHHHHHHHHHTTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred             HHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence            345666666543221      34455555555444 888999999999887 543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.32  E-value=1.5  Score=38.44  Aligned_cols=61  Identities=10%  Similarity=-0.053  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      .++..++..+...|++++++..+.+++...+-..      ..+..+..++...|+..+|++.|++..
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E------~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYRE------PLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3556677777888999999999999988766432      367888889999999999999999885

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.09  E-value=3.3  Score=31.99  Aligned_cols=80  Identities=4%  Similarity=0.024  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      ..|..+|......|+++-|.++|+++-++              ..+.-+|.-.|+.+.=.+.-+.+.            .
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~Ly~~tg~~e~L~kla~iA~------------~   88 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFLYLVTGDVNKLSKMQNIAQ------------T   88 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHHHHHHTCHHHHHHHHHHHH------------H
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHHHHHhCCHHHHHHHHHHHH------------H
Confidence            36777777777777777777777665332              223334444555443322222221            0


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHH
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALER  218 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~  218 (289)
                      .+.+..+..+++..||++++.+.|.+
T Consensus        89 ~g~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           89 REDFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            11123345677778888887777754

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.26  E-value=2  Score=37.70  Aligned_cols=166  Identities=11%  Similarity=0.125  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc--hHHH
Q 022992           87 SSNEAISCLEQAVNMFCDI-----------GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT--SANQ  153 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~-----------g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~--~~~~  153 (289)
                      ++++|++++++........           ........+...++..|...|+.++|..+.+++-......++..  ....
T Consensus        91 d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~  170 (393)
T 4b4t_O           91 DFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNS  170 (393)
T ss_dssp             CHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHH
Confidence            7788888777654332211           11233456777888888888999999999999998877665433  3445


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC---CCCc
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQSLN-NNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT---FSGT  229 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~---~~~~  229 (289)
                      .+.-.+..+...++|..+...+-........ ............+.++.+-+...+.    -.|.+.+. .|.   +..+
T Consensus       171 ~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i----~~f~eLL~-~p~i~~L~~~  245 (393)
T 4b4t_O          171 FYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKI----YNFGELLH-HPIMETIVND  245 (393)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSS----CSTHHHHH-SCCTTSSCSS
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCC----CChHHHhC-ChHHHHhhcC
Confidence            5666677788888988877665555432211 1111111111223334443332211    11333232 222   2334


Q ss_pred             hHHHHHHHHHHHHcccCHHHHHHHHHhc
Q 022992          230 REYRLLSDIAASMDEEDIAKFTDVVKEF  257 (289)
Q Consensus       230 ~e~~~l~~l~~a~~~~d~~~~~~al~~~  257 (289)
                      .+...+..|+.++..||...|...++.+
T Consensus       246 ~~~~~l~~Ll~~f~~g~~~~f~~~~~~~  273 (393)
T 4b4t_O          246 SNYDWLFQLLNALTVGDFDKFDSLIKVQ  273 (393)
T ss_dssp             SSTTHHHHHHHHHHHTCHHHHHHHCCHH
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            4555677899999999999998876543

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=91.11  E-value=7.8  Score=34.51  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      +--+..+.|+..++.+.=+....+.++.+...+++.+||-++...+.++...  ..-.++.   .. ..++..-.....-
T Consensus        17 ~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~---~~-~~~~~qt~~~~ke   92 (436)
T 2yin_A           17 CTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVM---QT-GQQHPQTHRQLKE   92 (436)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------CHHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccc---cC-CCCccccHHHHHH
Confidence            4557778888888899999999999999999999999999887766655433  1111110   00 0111111112223


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CccchHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNE-EVTTSANQCKQKVAQYAA  163 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~-~~~~~~~~~~~~l~~~~~  163 (289)
                      ..+..+...+..-+.++.|+..|+..+..++.. -+....+.++..++.+|.
T Consensus        93 ~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~  144 (436)
T 2yin_A           93 TLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE  144 (436)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777678888888888888888874 555556666666666654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.05  E-value=2  Score=28.67  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..+..-|.-....|++++|+.+|.+|++.+..
T Consensus        20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           20 RKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33444455566779999999999999998753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.81  E-value=0.84  Score=33.96  Aligned_cols=70  Identities=7%  Similarity=0.011  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          110 MAARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      -...+..+.|.++....   +..++|.+++..+..     .+...-+|+..+|.-+.++|+|++|.++.+..+...++
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            45566777777776653   346788888876652     22345689999999999999999999999998855443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.77  E-value=0.98  Score=33.15  Aligned_cols=69  Identities=7%  Similarity=0.003  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 022992          111 AARYYKEIAELYESEH---NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN  184 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g---~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  184 (289)
                      ...+..+.|.++....   +..++|..++..+...     +....+|+..+|.-+.++|+|++|.++.+..+...++
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            3456666666666543   4567888887766521     3345689999999999999999999999998755433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.08  E-value=9.7  Score=36.45  Aligned_cols=85  Identities=8%  Similarity=0.135  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHh----c--CCH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           88 SNEAISCLEQAVNMFCD----I--GRL------SMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        88 ~~~A~~~~~~A~~~~~~----~--g~~------~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      =-+|+....++++-...    .  .+.      ...+..|..-+..+...|+++-|+++-++|+.+.+..      ..++
T Consensus       301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse------F~tW  374 (754)
T 4gns_B          301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS------FESW  374 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh------hHHH
Confidence            34677777777653321    1  111      1223355555666666799999999999999987653      4689


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEI  178 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a  178 (289)
                      ..|+.+|+.+|+|+.|+=.+...
T Consensus       375 ~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          375 YNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccHHHHHHHHhcC
Confidence            99999999999999999866544

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=88.38  E-value=4.4  Score=27.57  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|..+..-|.-....|++++|+.+|..|++++..
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4444555556667779999999999999998764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=88.31  E-value=4.1  Score=27.12  Aligned_cols=35  Identities=9%  Similarity=0.001  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..|..+..-|.-....|++++|+.+|..|++++..
T Consensus        11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A           11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34444555556666779999999999999998653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.25  E-value=3.2  Score=37.79  Aligned_cols=138  Identities=7%  Similarity=-0.035  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHH--HHHHhcCC---HHHHHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHHHHhccCccchH
Q 022992           87 SSNEAISCLEQAV--NMFCDIGR---LSMAARYYKEIAELYESEHNIEQT----------IVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        87 ~~~~A~~~~~~A~--~~~~~~g~---~~~~a~~l~~la~~~~~~g~~~~A----------~~~y~~A~~~~~~~~~~~~~  151 (289)
                      ++++|.++-...+  +.....+.   -...|++|.-.+.+++..|+....          ...+..++....-..+....
T Consensus       151 ~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~q  230 (523)
T 4b4t_S          151 ELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETK  230 (523)
T ss_dssp             ----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchh
Confidence            6778888776555  22222221   124678888888888877776543          23444555544444556677


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      +.+++-+-..|...+.|+.|..+..+...  +...........+++-.|.++..++++.+|.++|..+....|.-
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            88899999999999999999999998842  11111112234566678999999999999999999988766653

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.94  E-value=2.7  Score=30.08  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|..+...|.-....|+|++|+.+|..|++++-.
T Consensus        17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3444445555566669999999999999998754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.74  E-value=11  Score=32.80  Aligned_cols=90  Identities=10%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhccC-----ccchH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc
Q 022992          125 EHNIEQTIVFFEKAADMFQNEE-----VTTSA-----------NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL  188 (289)
Q Consensus       125 ~g~~~~A~~~y~~A~~~~~~~~-----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  188 (289)
                      .|+++.|+..+.+|+.+++..-     ...+.           ..+...++..+...|++.+|+..++.++...   +  
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P--  202 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH---P--  202 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T--
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C--
Confidence            4788888999999988876421     11111           1344566677788999999999998886432   1  


Q ss_pred             ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          189 KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                       +.. ..+..+..++...|+..+|.+.|+++..
T Consensus       203 -~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          203 -YRE-PLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             -TCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             -CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             111 1334455677889999999999988754

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=87.48  E-value=1.4  Score=29.42  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      +..-|.-....|++++|+.+|.+|++.+.
T Consensus        14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A           14 YAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            33344445566888888888888887764

>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*

Probab=86.94  E-value=8.3  Score=34.22  Aligned_cols=92  Identities=11%  Similarity=0.100  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----c-----C----------------------------CHHHHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLK----L-----E----------------------------SKHEAAQA   75 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~----~-----~----------------------------~~~~aa~~   75 (289)
                      ...+.+.+..+...|+|.+|+-|+..++.+.-.    .     +                            ...+.-..
T Consensus        11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~l   90 (428)
T 2wm9_A           11 KTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMEL   90 (428)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHH
Confidence            445666777777777777777777644432211    0     0                            01112224


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES  124 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~  124 (289)
                      +..++..+.++ .++.|+.+|+..+.+|....++...+.++..++.+|..
T Consensus        91 l~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~  140 (428)
T 2wm9_A           91 LEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK  140 (428)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            56666666666 77888888888888888777877777777777777664

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=86.57  E-value=5.5  Score=26.68  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|..+..-|.-....|++++|+.+|..|++++-.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4445555566667779999999999999998753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.55  E-value=5  Score=39.86  Aligned_cols=103  Identities=11%  Similarity=0.023  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .-.+++.+=..+.+.|+.++|...|.+..+.-.. |-.... .+|+-+..-+.+.|++++|.++|++...........  
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~Pdv-vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv--  201 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLTL-DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL--  201 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCCH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH--
Confidence            3446777777777778888888888765443221 111112 367888888888899999999988886433222211  


Q ss_pred             chhhHHHHHHHHHHccCC-HHHHHHHHHHHhh
Q 022992          191 GVKGHLLNAGICQLCKGD-VVAITNALERYQD  221 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd-~~~A~~~~~~~~~  221 (289)
                          .|..+..++...|. .+.|.+.|++..+
T Consensus       202 ----TYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          202 ----SYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             ----HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence                22333334444464 4567777776543

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.25  E-value=2.1  Score=28.99  Aligned_cols=38  Identities=16%  Similarity=0.058  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .+...|......+..+...|+|++||++.++|+.+..+
T Consensus        10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34556777777888888889999999999998877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.80  E-value=5.9  Score=39.87  Aligned_cols=127  Identities=8%  Similarity=-0.027  Sum_probs=86.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcC----CH-------------HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLE----SK-------------HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVN  100 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~-------------~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~  100 (289)
                      .|.+|...|++++|..+|.+|+......+    ..             ..-...|..+..++.+. .++-+++..+.|++
T Consensus       848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~  927 (1139)
T 4fhn_B          848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA  927 (1139)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            47788899999999999998854321111    00             11234677777777655 78889999999987


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHH
Q 022992          101 MFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIE  173 (289)
Q Consensus       101 ~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  173 (289)
                      .. ..++.......|.++=..+...|+|++|.......    +..   ....+|+..+...+++.|..+.=+.
T Consensus       928 ~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~---~~r~~cLr~LV~~lce~~~~~~L~~  992 (1139)
T 4fhn_B          928 SK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STT---PLKKSCLLDFVNQLTKQGKINQLLN  992 (1139)
T ss_dssp             HC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHS---SSCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             hc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCH---HHHHHHHHHHHHHHHhCCChhhhhC
Confidence            53 34555556667888888888889999987766432    211   1234688888888887776665544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.80  E-value=4.1  Score=27.10  Aligned_cols=35  Identities=17%  Similarity=-0.018  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (289)
Q Consensus        29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~   64 (289)
                      .+.|+++..+|- -....|++++|+.+|.++++.+.
T Consensus        16 ~~~Ai~lv~~Av-e~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           16 EEMARKYAINAV-KADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence            345666555553 34567788888888877777764

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.20  E-value=4  Score=27.38  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHL   64 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~   64 (289)
                      |....|+++..+|-.. ...|++++|+.+|..+++.+.
T Consensus        11 ~~~~~A~~lv~~Ave~-D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           11 PQSTAAATVLKRAVEL-DSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence            4445566655555444 567788888888888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-53

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (440), Expect = 2e-53
 Identities = 88/288 (30%), Positives = 152/288 (52%), Gaps = 10/288 (3%)

Query: 5   IARAEEFEKKAEKKLNGWGLFGS--------KYEDAADLFDKAANSFKLAKSWDKAGATY 56
           I+   E  K+AEKK      F          K+E+AADL  +AA  ++L K  + AG ++
Sbjct: 1   ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSF 60

Query: 57  VKLANCHLKLESKHEAAQAYVDAAHCYKKTSS-NEAISCLEQAVNMFCDIGRLSMAARYY 115
           +K A+   K  ++ EA   YV+A  C+K   +   A+  LE A+ +F   G+    A + 
Sbjct: 61  LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120

Query: 116 KEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEI 174
            E+ E+ E++ H+  + I  +E A + +  ++    +N+C  K A   A   QY ++ +I
Sbjct: 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180

Query: 175 YEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRL 234
           Y ++ + S+ N L ++ +K + L  G+CQL   D VA    L+  Q  DP F+ +RE   
Sbjct: 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240

Query: 235 LSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE 282
           L  +  +++E D  + ++  KEFD+   LD WK T+L ++KE ++ +E
Sbjct: 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQE 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	100.0
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.19
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.19
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.19
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.17
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.1
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.09
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.06
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.01
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.95
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.86
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.78
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.65
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.39
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.03
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.27
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.04
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.74
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.68
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.95
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.55
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.22
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	81.98
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	81.47

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-39  Score=279.08  Aligned_cols=277  Identities=32%  Similarity=0.537  Sum_probs=246.7

Q ss_pred             hhHHHHHHHHHHhhcc-CCC----C---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992            6 ARAEEFEKKAEKKLNG-WGL----F---GSKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYV   77 (289)
Q Consensus         6 ~~a~~~~~~A~~~~k~-~~~----~---~~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~   77 (289)
                      .||++++++|+|++++ -++    +   +++|++|+++|.+||++|+..|+|++|+++|.+|++++.+.+++..++.+|.
T Consensus         2 ~~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~   81 (290)
T d1qqea_           2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYV   81 (290)
T ss_dssp             CCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4789999999999983 222    2   2679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           78 DAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES-EHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        78 ~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~-~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      ++|.+|.+. ++++|+++|+++++++...|++...+.++.++|.++.. .|++++|+.+|++|+++++..+++.....++
T Consensus        82 ~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~  161 (290)
T d1qqea_          82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF  161 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHH
Confidence            999999877 99999999999999999999999999999999999865 6999999999999999999999888888999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLL  235 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l  235 (289)
                      .++|.++..+|+|++|+.+|++++......+...+.....++++++|++..||+..|...++++.+++|.|..++|+.++
T Consensus       162 ~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l  241 (290)
T d1qqea_         162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFL  241 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHH
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHH
Confidence            99999999999999999999999866555554556666778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccc
Q 022992          236 SDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKE  282 (289)
Q Consensus       236 ~~l~~a~~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~  282 (289)
                      ..|+.++..+|.+.+.+++..|+.+.++|||.+.++.++++.|.-++
T Consensus       242 ~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~~le~~e  288 (290)
T d1qqea_         242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQE  288 (290)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhcccC
Confidence            99999999999999999999999999999999999999999887654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=5.9e-17  Score=137.29  Aligned_cols=210  Identities=16%  Similarity=0.154  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc
Q 022992           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT  148 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~  148 (289)
                      .+++..|.++|.+|... ++++|+++|.+|++++...+++...+.++.++|.+|...|++++|+.+|++++++++..+..
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            34455555666667666 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          149 TSANQCKQKVAQYAAE-LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       149 ~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .....++.++|.++.. .|++++|+++|++++......+. .......+.++|.++..+|++.+|...|+++....+...
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            9999999999999865 69999999999999754333222 122345678899999999999999999999988777654


Q ss_pred             Cc--hHHHHHHHHHH-HHcccCHHHHHHHHHhccccCC--CchhHHHHHHHHHHhccc
Q 022992          228 GT--REYRLLSDIAA-SMDEEDIAKFTDVVKEFDSMTP--LDPWKTTLLLRVKEKLKA  280 (289)
Q Consensus       228 ~~--~e~~~l~~l~~-a~~~~d~~~~~~al~~~~~~~~--~d~~~~~~~~~~~~~~~~  280 (289)
                      ..  .-...+..++. .+..+|++....++..+..+.+  .++....++..+...+..
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~  250 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE  250 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh
Confidence            22  11122223333 3357888777777776655543  122223445555444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-14  Score=122.92  Aligned_cols=194  Identities=12%  Similarity=0.073  Sum_probs=139.8

Q ss_pred             HHHHHHHHhhccCCCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           10 EFEKKAEKKLNGWGLFGSKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQA   75 (289)
Q Consensus        10 ~~~~~A~~~~k~~~~~~~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~   75 (289)
                      ..+.+|...++.     |++++|..+|+++              |.+|...|++++|+.+|.+++++....      ...
T Consensus        21 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~   89 (323)
T d1fcha_          21 QPFEEGLRRLQE-----GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTA   89 (323)
T ss_dssp             SHHHHHHHHHHT-----TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------ccc
Confidence            345566665552     5888888888887              677888999999999999998774321      345


Q ss_pred             HHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC-----------------------------CHH----------------
Q 022992           76 YVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG-----------------------------RLS----------------  109 (289)
Q Consensus        76 ~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g-----------------------------~~~----------------  109 (289)
                      +..+|.+|... ++++|++++++++.+.+...                             ...                
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~  169 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS  169 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             cccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            56666666554 66666666666554322100                             000                


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLK  189 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  189 (289)
                      ..+.++..+|.++...|++++|+.+|++++.+.+..      ..++..+|.++..+|++++|+.+|++++...+      
T Consensus       170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------  237 (323)
T d1fcha_         170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQP------  237 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred             cccccchhhHHHHHHHHHHhhhhccccccccccccc------ccchhhhhhcccccccchhHHHHHHHHHHHhh------
Confidence            013467788999999999999999999999876543      35788999999999999999999999875421      


Q ss_pred             cchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          190 YGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       190 ~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                       .....++++|.++...|+++.|...|++++++.|...
T Consensus       238 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         238 -GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence             1234577889999999999999999999988777543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-14  Score=124.65  Aligned_cols=212  Identities=13%  Similarity=0.152  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+...+..+...|++++|...+.++++....      ...++..+|.++... ++++|+..++++..+.+.      .+.
T Consensus       171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~  238 (388)
T d1w3ba_         171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAV  238 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHH
T ss_pred             HHHhhcccccccCcHHHHHHHHHHHHHhCcc------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh------HHH
Confidence            3444577888899999999999999987432      245788899999777 999999999999887543      245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ++..+|.++...|++++|+.+|++|+++.+..      ..++..+|.++...|++++|++.|+++......       ..
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~  305 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-------HA  305 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-------CH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-------cc
Confidence            78899999999999999999999999986543      367899999999999999999999998744211       22


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccCHHHHHHHHHhccccCCCchhHHHHHH
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EEDIAKFTDVVKEFDSMTPLDPWKTTLLL  272 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d~~~~~~al~~~~~~~~~d~~~~~~~~  272 (289)
                      ..+..++.++...|++++|...|++++++.|...     .....++..+. .|+   +++|+..|...-.++|.+...+.
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~  377 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-----AAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH-----HHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Confidence            3456778899999999999999999998877642     34566777663 544   55666777777778888888888


Q ss_pred             HHHHhcc
Q 022992          273 RVKEKLK  279 (289)
Q Consensus       273 ~~~~~~~  279 (289)
                      .+...+.
T Consensus       378 ~lg~~~~  384 (388)
T d1w3ba_         378 NMGNTLK  384 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.2e-15  Score=126.50  Aligned_cols=190  Identities=16%  Similarity=0.198  Sum_probs=153.1

Q ss_pred             CCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHH
Q 022992           27 SKYEDAADLFDKA--------------ANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEA   91 (289)
Q Consensus        27 ~~~~~A~~~~~~A--------------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A   91 (289)
                      +++++|...+.++              |.++...|++++|+..|.++......      .+..+..+|.++... ++++|
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A  256 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLA  256 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh------HHHHHHHHHHHHHHCCCHHHH
Confidence            6777777777765              56778899999999999998876432      245677889999777 99999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992           92 ISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus        92 ~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      +.+|++++++.+..      ..++..+|.++...|++++|+..|++++...+..      ..++..+|.++...|++++|
T Consensus       257 ~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A  324 (388)
T d1w3ba_         257 IDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc------chhhhHHHHHHHHCCCHHHH
Confidence            99999999886543      4588999999999999999999999998876543      35788999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHc-ccC
Q 022992          172 IEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMD-EED  246 (289)
Q Consensus       172 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~-~~d  246 (289)
                      +++|++++...+       .....++++|.++...|++++|...|+++++++|.+.     .....|+.++. .||
T Consensus       325 ~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         325 VRLYRKALEVFP-------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA-----DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTTSCT-------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH-----HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC
Confidence            999999973321       1234678899999999999999999999999988753     34566776653 443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.9e-12  Score=107.62  Aligned_cols=235  Identities=11%  Similarity=0.007  Sum_probs=175.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC--HHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR--LSMAARYY  115 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~--~~~~a~~l  115 (289)
                      .|.+|...|++++|...|.+++++....++....+..+..++.++... ++..|...+.+++.+....+.  ....+.++
T Consensus        57 lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  136 (366)
T d1hz4a_          57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV  136 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHH
Confidence            367788999999999999999999999999999999999999999777 999999999999999987653  34567788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhH
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGH  195 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  195 (289)
                      ..+|.++...|+++.+..+|.++....+..+.... ..++...+.++...+++.++...+.++.................
T Consensus       137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            89999999999999999999999999887665543 46788899999999999999999999875433222111112233


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-cccCH----HHHHHHHHhccccCCCchhHHHH
Q 022992          196 LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASM-DEEDI----AKFTDVVKEFDSMTPLDPWKTTL  270 (289)
Q Consensus       196 ~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~-~~~d~----~~~~~al~~~~~~~~~d~~~~~~  270 (289)
                      +...+.++...|++..|...+.++..+.+... .........++.++ ..|+.    ..++.++...... ..+|.....
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~  293 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRN  293 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc-ccChHHHHH
Confidence            44567778888999999999998877666543 22333444555554 36664    3445555554443 344555544


Q ss_pred             HHHHHH
Q 022992          271 LLRVKE  276 (289)
Q Consensus       271 ~~~~~~  276 (289)
                      +..+..
T Consensus       294 ~~~la~  299 (366)
T d1hz4a_         294 LLLLNQ  299 (366)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-14  Score=123.25  Aligned_cols=195  Identities=11%  Similarity=0.023  Sum_probs=149.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 022992           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYK  116 (289)
Q Consensus        38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~  116 (289)
                      +-|..+...|++++|+.+|.++++.....      +.++..+|.+|... ++++|+.+|.+|+++.+..      ...+.
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~   91 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALM   91 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc------ccccc
Confidence            34666778999999999999999775432      56889999999877 9999999999999986543      35889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhccCc---------------------------------------------cchH
Q 022992          117 EIAELYESEHNIEQTIVFFEKAADMFQNEEV---------------------------------------------TTSA  151 (289)
Q Consensus       117 ~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~---------------------------------------------~~~~  151 (289)
                      .+|.++...|++++|++.|++++.+.+....                                             ....
T Consensus        92 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~  171 (323)
T d1fcha_          92 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID  171 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred             cccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999998876442110                                             0011


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchH
Q 022992          152 NQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTRE  231 (289)
Q Consensus       152 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e  231 (289)
                      +.++..+|.++...|++++|+.+|++++.....       ....+..+|.++...|++++|...|++++++.|.+.    
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----  240 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI----  240 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccc-------cccchhhhhhcccccccchhHHHHHHHHHHHhhccH----
Confidence            345678899999999999999999999754321       234677889999999999999999999999887653    


Q ss_pred             HHHHHHHHHHHc-ccCH----HHHHHHHHh
Q 022992          232 YRLLSDIAASMD-EEDI----AKFTDVVKE  256 (289)
Q Consensus       232 ~~~l~~l~~a~~-~~d~----~~~~~al~~  256 (289)
                       .....++.++. .|+.    ..+++|++.
T Consensus       241 -~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         241 -RSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence             34566777664 6663    345555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=6.3e-12  Score=106.32  Aligned_cols=224  Identities=10%  Similarity=-0.079  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           34 DLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        34 ~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ++..--+.++...|++++|+..|.++++.... +++...+.++..+|.+|... ++++|+.+|++++.+.+..++....+
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            33444577888999999999999999987654 34555677889999999776 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc--chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT--TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      ..+..++.++...|++..|+..+.+++.+.+.....  .....++..+|.++...|+++.|...++++.........  .
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  169 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP--Q  169 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG--G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh--h
Confidence            999999999999999999999999999998765433  445567888999999999999999999999754432221  1


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch-H-HHHHHHHHHHH-cccCHHHHHHHHHhcccc
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR-E-YRLLSDIAASM-DEEDIAKFTDVVKEFDSM  260 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~-e-~~~l~~l~~a~-~~~d~~~~~~al~~~~~~  260 (289)
                      .....+...+.++...|+...+...+..+..+.+...... . ......++..+ ..++.+.....+.....+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  242 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  242 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            2233445567778888999999999998877666554322 2 22233333333 367776655555554444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-12  Score=111.27  Aligned_cols=169  Identities=8%  Similarity=0.002  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT--SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~--~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      .+.+...+.++...+.+++|+.++.+|+++-...      ..+|.+.|.++...  ++++|+.++++++.+.++..    
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~----  112 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----  112 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh----
Confidence            4455566888999999999999999999985432      56788889888765  79999999999999987654    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                        .++..+|.++..+|++++|+.+|.+|+++.+..      ..++.++|.++..+|++++|+..|++++...+.+     
T Consensus       113 --~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n-----  179 (315)
T d2h6fa1         113 --QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-----  179 (315)
T ss_dssp             --HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----
T ss_pred             --hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc-----
Confidence              499999999999999999999999999987654      2589999999999999999999999998553221     


Q ss_pred             chhhHHHHHHHHHHccC------CHHHHHHHHHHHhhcCCCC
Q 022992          191 GVKGHLLNAGICQLCKG------DVVAITNALERYQDMDPTF  226 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~g------d~~~A~~~~~~~~~~~~~~  226 (289)
                        ..++.+.|.++...+      +..+|...+.+++++.|..
T Consensus       180 --~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~  219 (315)
T d2h6fa1         180 --NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN  219 (315)
T ss_dssp             --HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred             --HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc
Confidence              234566666654443      3678899999999988875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.2e-13  Score=106.40  Aligned_cols=136  Identities=16%  Similarity=0.181  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC
Q 022992           29 YEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR  107 (289)
Q Consensus        29 ~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~  107 (289)
                      +.+|+.+|++ |..+...|+|++|++.|.++       .++.  +..+.++|.+|... ++++|+++|++|+++.+..  
T Consensus         2 ~~~~~~l~~~-g~~~~~~~d~~~Al~~~~~i-------~~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~--   69 (192)
T d1hh8a_           2 LVEAISLWNE-GVLAADKKDWKGALDAFSAV-------QDPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--   69 (192)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCHHHHHHHHHTS-------SSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHH-HHHHHHCCCHHHHHHHHHhc-------CCCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh--
Confidence            4678889988 88888999999999988753       2221  35788999999887 9999999999999986643  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc----------cchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV----------TTSANQCKQKVAQYAAELEQYHKSIEIYEE  177 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  177 (289)
                          +.++.++|.++..+|++++|+..|++|+...+....          .....+++.++|.++..+|++++|++.|++
T Consensus        70 ----~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          70 ----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                559999999999999999999999999987665432          133467899999999999999999999999


Q ss_pred             HHH
Q 022992          178 IAR  180 (289)
Q Consensus       178 a~~  180 (289)
                      ++.
T Consensus       146 A~~  148 (192)
T d1hh8a_         146 ATS  148 (192)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            873

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.3e-12  Score=104.75  Aligned_cols=176  Identities=7%  Similarity=-0.041  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSM  110 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~  110 (289)
                      -+..+..-|.+|...|++++|+.+|.+++.+....      +.++.++|.+|... ++++|+.+|++++.+.+...    
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----  105 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----  105 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh----
Confidence            35667788999999999999999999999885432      56789999999887 99999999999999977654    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH------------
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEI------------  178 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------  178 (289)
                        .++.++|.++..+|++++|+..|++++++.+....      ....++..+...+..+.+..+....            
T Consensus       106 --~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (259)
T d1xnfa_         106 --YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF------RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI  177 (259)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH
T ss_pred             --hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH------HHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH
Confidence              38999999999999999999999999998764321      2223333333333222222111111            


Q ss_pred             -----------------HHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          179 -----------------ARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       179 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                                       .................++.+|.++...|+++.|...|++++...|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence                             00000000000011234567889999999999999999999988775

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=1.3e-11  Score=94.22  Aligned_cols=127  Identities=15%  Similarity=0.106  Sum_probs=103.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-----
Q 022992           40 ANSFKLAKSWDKAGATYVKLANCHLKLES------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-----  107 (289)
Q Consensus        40 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-----  107 (289)
                      |..+...|+|++|+..|.+|+++.+..++      ....+.+|.++|.+|... ++++|+.++++++.++++.+.     
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            66677889999999999999999987654      345678999999999887 999999999999999987654     


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-chHHHHHHHHHHHHHHhc
Q 022992          108 LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-TSANQCKQKVAQYAAELE  166 (289)
Q Consensus       108 ~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  166 (289)
                      ....+.++.++|.+|..+|++++|+.+|++|++++++.... .........++.-+..+|
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence            34566789999999999999999999999999999876443 444555666666555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-12  Score=111.10  Aligned_cols=191  Identities=11%  Similarity=0.017  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCc
Q 022992           70 HEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEV  147 (289)
Q Consensus        70 ~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g-~~~~A~~~y~~A~~~~~~~~~  147 (289)
                      ..-+.++..+|.++.+. .+++|+.++++|+++.+..-      .++.+.|.++..+| ++++|+.+|++++++.+..  
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~------~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--  111 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY------TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--  111 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh--
Confidence            34577888889999877 89999999999999977554      48999999999876 5999999999999987654  


Q ss_pred             cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          148 TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       148 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                          ..++..+|.++..+|++++|+++|++++...+.       ....+.+.|.++...|+++.|...++++++++|...
T Consensus       112 ----~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         112 ----YQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             ----HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             ----hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccH
Confidence                368999999999999999999999999854322       234678889999999999999999999999988864


Q ss_pred             CchHHHHHHHHHHHH----cccCHHHHHHHHHhccccCCCchhHHHHHHHHHHhccccccc
Q 022992          228 GTREYRLLSDIAASM----DEEDIAKFTDVVKEFDSMTPLDPWKTTLLLRVKEKLKAKELE  284 (289)
Q Consensus       228 ~~~e~~~l~~l~~a~----~~~d~~~~~~al~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  284 (289)
                      .+     ...++..+    ...+...+.+++..+.....++|.+...+..+...+...++.
T Consensus       181 ~a-----~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~  236 (315)
T d2h6fa1         181 SV-----WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLS  236 (315)
T ss_dssp             HH-----HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGG
T ss_pred             HH-----HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChH
Confidence            22     22222222    244567788888888888888888888887777766655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-11  Score=98.03  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccch
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTS  150 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~  150 (289)
                      +...|.+ |..+... ++++|+++|.++       .++  -+.++.++|.+|..+|++++|+.+|++|+++.+..     
T Consensus         5 ~~~l~~~-g~~~~~~~d~~~Al~~~~~i-------~~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-----   69 (192)
T d1hh8a_           5 AISLWNE-GVLAADKKDWKGALDAFSAV-------QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-----   69 (192)
T ss_dssp             HHHHHHH-HHHHHHTTCHHHHHHHHHTS-------SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHH-HHHHHHCCCHHHHHHHHHhc-------CCC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-----
Confidence            3444554 5555444 899999888764       221  24578999999999999999999999999986643     


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccc---------ccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          151 ANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLL---------KYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       151 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                       +.++.++|.++..+|+|++|++.|++++....+++..         .......++++|.++...|++..|...|.++..
T Consensus        70 -~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          70 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence             3689999999999999999999999997532222111         112245678899999999999999999999988


Q ss_pred             cCCC
Q 022992          222 MDPT  225 (289)
Q Consensus       222 ~~~~  225 (289)
                      +.+.
T Consensus       149 ~~~~  152 (192)
T d1hh8a_         149 MKSE  152 (192)
T ss_dssp             TCCS
T ss_pred             cCCC
Confidence            7665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.34  E-value=3.8e-11  Score=91.50  Aligned_cols=114  Identities=12%  Similarity=0.063  Sum_probs=91.8

Q ss_pred             HHHHHHHH--HHHHcc-CCHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           72 AAQAYVDA--AHCYKK-TSSNEAISCLEQAVNMFCDIGR------LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus        72 aa~~~~~~--a~~~~~-~~~~~A~~~~~~A~~~~~~~g~------~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      .+.++..+  |..+.. +++++|+..|++|+++.+..++      ....+.++.++|.+|..+|++++|+..|++|+.++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34455555  445544 3999999999999999998765      34568899999999999999999999999999998


Q ss_pred             hccCcc-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          143 QNEEVT-----TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       143 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      +.....     .....+++++|.+|..+|++++|+..|++++......
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            865432     2345578999999999999999999999998655433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.3e-11  Score=89.63  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc-c
Q 022992           72 AAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT-T  149 (289)
Q Consensus        72 aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~-~  149 (289)
                      .|..+.++|+.+... ++++|+.+|++|+++.+..      +.++.++|.++..+|++++|+..|++|+++.+..... .
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            466788899988766 9999999999999986543      4589999999999999999999999999998876543 4


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..+.++..+|.++..++++++|+.+|++++.
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            5578899999999999999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2.5e-10  Score=93.17  Aligned_cols=103  Identities=10%  Similarity=0.029  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q 022992           68 SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE  146 (289)
Q Consensus        68 ~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~  146 (289)
                      .+...+.++.+.|.+|... ++++|+.+|++|+.+.+..      +.++.++|.++...|++++|+.+|++++++.+...
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh
Confidence            3556788999999999877 9999999999999986543      45899999999999999999999999999876543


Q ss_pred             ccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          147 VTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       147 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                            .++.++|.++..+|++++|+..|++++...
T Consensus       106 ------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         106 ------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ------hhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence                  578999999999999999999999998553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.7e-11  Score=86.71  Aligned_cols=107  Identities=12%  Similarity=0.058  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcccccc
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKY  190 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  190 (289)
                      .|..+.++|..+...|++++|+.+|++|+++.+..      ..++.++|.++..+|+|++|+..|++++......+....
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            45677899999999999999999999999986643      358999999999999999999999999866554433333


Q ss_pred             chhhHHHHHHHHHHccCCHHHHHHHHHHHhhcC
Q 022992          191 GVKGHLLNAGICQLCKGDVVAITNALERYQDMD  223 (289)
Q Consensus       191 ~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~  223 (289)
                      .....+.++|.++...+++..|...|++++...
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            344567788999999999999999999998764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.1e-10  Score=88.64  Aligned_cols=128  Identities=13%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      .+..+..-|+.+...|+|++|+.+|.+++.+......         ..-...++.++|.||.+. ++++|+.++++|+.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4555666777777788888888888888877653322         112244666777777666 788888888888877


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHH
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKS  171 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  171 (289)
                      .+..      ..++..+|.++..+|++++|+.+|++|+++.+.+      ..+...++.+....+++.+.
T Consensus        92 ~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n------~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 DSNN------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Confidence            5432      4577788888888888888888888888776543      13455666666555554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=5.5e-11  Score=93.60  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSAN  152 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~  152 (289)
                      ..+.+.|..+... ++++|+.+|++|+++.+..      +.++.++|.+|...|++++|+.+|++|+++.+..      .
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~------~   72 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------V   72 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------H
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc------H
Confidence            3455566666544 6777777777776665432      3466777777777777777777777776664432      2


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          153 QCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       153 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .++.++|.++..+|+|++|+..|++++...
T Consensus        73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          73 KAHFFLGQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            456667777777777777777777766443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.2e-10  Score=87.35  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      .+..-|+.|...|+|++|+.+|.+++.+...      -+.+|.++|.+|... ++++|+.+|++|+++.+...      .
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~------~   79 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI------K   79 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch------H
Confidence            3445577777888899999999988887543      266888899999777 99999999999998865433      4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH--HHhcCHHHHHHHHH
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA--AELEQYHKSIEIYE  176 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~  176 (289)
                      ++..+|.++..+|++++|+.+|++++.+.+...      .++..++.+.  ...+.+++|+...+
T Consensus        80 a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~~a~~~~~  138 (159)
T d1a17a_          80 GYYRRAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            789999999999999999999999998865432      3444455443  34455666665543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-10  Score=86.93  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccc
Q 022992           71 EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTT  149 (289)
Q Consensus        71 ~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~  149 (289)
                      +.|..+...|+.|.+. ++++|+.+|++|+.+.+..      +.++.++|.++...|++++|+..|++|+++.+..    
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~----   77 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc----
Confidence            3455666677777555 9999999999999997654      5599999999999999999999999999986653    


Q ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          150 SANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       150 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                        ..++..+|.++..+|+|++|+..|++++...
T Consensus        78 --~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          78 --IKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence              2578999999999999999999999998553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-10  Score=81.50  Aligned_cols=101  Identities=11%  Similarity=-0.013  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      .-+...|..+...|++++|+.+|.+++.+.+..      +.++.++|.++..+|++++|+..|++++...+.       .
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~   70 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------W   70 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccc-------h
Confidence            346678888888899999999999999886654      358899999999999999999999999854322       2


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ...++++|.++..+|++..|...|+++++++|..
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            3467889999999999999999999999887764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.16  E-value=2.8e-10  Score=87.69  Aligned_cols=126  Identities=13%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           32 AADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLES---------KHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        32 A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      .++.+...|+.+...|+|.+|+.+|.+|+.+....-.         ....+.++.++|.||... ++++|+.++++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            3555666777777778888888888887776532211         122345666777777666 777777777777776


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHH
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYH  169 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  169 (289)
                      .+.+      ..++.++|.++..+|++++|+..|++++.+.+...      .+...++.+....+.+.
T Consensus        94 ~p~~------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~------~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          94 DSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK------AARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH------HHHHHHHHHHHHHHHHH
T ss_pred             ccch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhHH
Confidence            4433      34677777777777777777777777777654321      34555565555555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7e-10  Score=85.58  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIAR  180 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  180 (289)
                      ..+..+...|..+...|++++|+.+|++|+.+++.....         .....++.++|.+|..+|+|++|+.++++++.
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            457788889999988899999999999999998765432         22335678899999999999999999999985


Q ss_pred             HHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          181 QSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ..+.       ...+++..|.|+..+|+++.|...|+++++++|..
T Consensus        91 ~~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          91 LDSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             cccc-------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            5321       23467889999999999999999999999998864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.14  E-value=6.2e-10  Score=84.31  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc----------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT----------TSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ..+..+...|..+...|+|.+|+..|++|++++......          .....++.++|.+|..+|+|++|+++|++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            455667778888888899999999999999987654432          1123578899999999999999999999998


Q ss_pred             HHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          180 RQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      ...+.       ...++++.|.++..+|++..|...|+++++++|..
T Consensus        95 ~~~p~-------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          95 KIDKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHSTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             cccch-------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            55321       12467889999999999999999999999998864

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-10  Score=83.48  Aligned_cols=95  Identities=13%  Similarity=0.149  Sum_probs=78.2

Q ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHH
Q 022992           75 AYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQ  153 (289)
Q Consensus        75 ~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~  153 (289)
                      -+.+-|..+... ++++|+.+|++++.+.+..      +.++.++|.++..+|++++|+..|.+++++.+...      .
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~   72 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG------K   72 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------hhhhhcccccccccccccccchhhhhHHHhccchh------h
Confidence            345567766555 8999999999998886644      34899999999999999999999999999876532      5


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          154 CKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       154 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      ++.++|.++..+|++++|+..|++++..
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            7899999999999999999999999743

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.10  E-value=2.5e-09  Score=82.10  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcc---------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVT---------TSANQCKQKVAQYAAELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  181 (289)
                      .+..+...|..+...|++.+|+.+|.+|+.+.+.....         .....++.++|.+|..+|+|++|+..+++++..
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            46678888888888899999999999999887643321         223456788999999999999999999999854


Q ss_pred             HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCC
Q 022992          182 SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTF  226 (289)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~  226 (289)
                      .+.       ....+++.|.++..+|++..|...|+++++++|..
T Consensus        94 ~p~-------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          94 DSA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             ccc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            321       23457788999999999999999999999988764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=1.1e-09  Score=84.24  Aligned_cols=105  Identities=14%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 022992           33 ADLFDKAANSFKLAKSWDKAGATYVKLANCHLKLE----------SKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNM  101 (289)
Q Consensus        33 ~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~  101 (289)
                      ++.+...++.+...|+|.+|+..|.+++.......          .....+.++.++|.+|.+. ++++|+.+|.+|+++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            33455557777777788888888877776543210          0122344455555555554 555555555555554


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          102 FCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       102 ~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+.      -+.++..+|.++..+|++++|+..|++|+++.+
T Consensus       107 ~p~------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1         107 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhh------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            332      133555555555555555555555555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.09  E-value=4.5e-10  Score=85.12  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHh
Q 022992           36 FDKAANSFKLAKSWDKAGATYVKLANCHLKLESKH----------EAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCD  104 (289)
Q Consensus        36 ~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~  104 (289)
                      +..-|+.+...|+|.+|+.+|.+|+.+........          ....++.++|.+|.+. ++++|++++++|+++.+.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            44445555566777777777777776544322110          0122334444444333 444444444444444322


Q ss_pred             cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992          105 IGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus       105 ~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      .      .+++..+|.++..+|++++|+.+|++++++.
T Consensus       100 ~------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1         100 N------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             C------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             h------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            1      1244444444444444444444444444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.8e-10  Score=90.53  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccc
Q 022992          112 ARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYG  191 (289)
Q Consensus       112 a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  191 (289)
                      +..+...|..+...|++++|+.+|++|+++.+..      +.++.++|.+|..+|+|++|+.+|++++...+       .
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-------~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALELDG-------Q   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-------C
Confidence            4568889999999999999999999999997643      36899999999999999999999999973321       1


Q ss_pred             hhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          192 VKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       192 ~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ....++++|.++..+|+++.|...|++++++.|...
T Consensus        71 ~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            234578899999999999999999999988777543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.06  E-value=3.4e-10  Score=81.10  Aligned_cols=91  Identities=8%  Similarity=0.024  Sum_probs=76.0

Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHH
Q 022992           77 VDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCK  155 (289)
Q Consensus        77 ~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~  155 (289)
                      .+.|.++.+. ++++|+.+|++++.+.+..      +.++..+|.++...|++++|+.+|++|+++.+..      ..++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~   87 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVH   87 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhccccccccccccc------ccch
Confidence            4556666555 8889999999998886643      5689999999999999999999999999987653      3688


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          156 QKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       156 ~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ..+|.++...|++++|++++++++
T Consensus        88 ~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          88 AALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.02  E-value=1.4e-09  Score=77.85  Aligned_cols=94  Identities=11%  Similarity=-0.012  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchh
Q 022992          114 YYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVK  193 (289)
Q Consensus       114 ~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  193 (289)
                      ....+|.++...|++++|+.+|++++.+.+..      ..++..+|.++...|++++|+.+|++++...+.       ..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~   84 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------DI   84 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc------chhhhhhhhhhhhhhhHHHhhcccccccccccc-------cc
Confidence            45678999999999999999999999987643      468999999999999999999999999855322       23


Q ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHh
Q 022992          194 GHLLNAGICQLCKGDVVAITNALERYQ  220 (289)
Q Consensus       194 ~~~~~~~~~~l~~gd~~~A~~~~~~~~  220 (289)
                      ..+..+|.++...|++.+|.+++++++
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            567889999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=5.4e-09  Score=80.20  Aligned_cols=103  Identities=10%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIG----------RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMF  142 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g----------~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~  142 (289)
                      ..+...|..+... ++.+|+.+|.+|+.+.....          .....+.++.++|.++..+|++++|+..|.+|+++.
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            3445566666554 89999999999987754321          123467789999999999999999999999999986


Q ss_pred             hccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          143 QNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      +..      +.++.++|.++..+|+|++|+..|++++...
T Consensus       108 p~~------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1         108 PSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhh------hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            542      3689999999999999999999999998654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-09  Score=78.45  Aligned_cols=101  Identities=8%  Similarity=0.026  Sum_probs=79.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE---LEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      .+++..+...+++++|.+.|++|+.+.+..      ..+++++|.++..   .+++++|+.+|++++.....     ...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-----~~~   71 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-----EEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-----HHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-----chH
Confidence            455666667789999999999999986653      3688999999976   45777899999998632111     112


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ...++++|.+|...|+++.|+.+|++++++.|.+.
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence            34678899999999999999999999999998864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.9e-09  Score=93.41  Aligned_cols=124  Identities=11%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcC
Q 022992           89 NEAISCLEQAVNMFCDI-GRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQ  167 (289)
Q Consensus        89 ~~A~~~~~~A~~~~~~~-g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  167 (289)
                      .+|...|..++..+... +-....+..+.++|..+...|++++|+..|.+++.+...        .++..+|+++...|+
T Consensus        96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~LG~l~~~~~~  167 (497)
T d1ya0a1          96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--------HCLVHLGDIARYRNQ  167 (497)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--------HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHccc
Confidence            34455555555444332 112234456778888888888888888888888876532        477888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          168 YHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       168 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      |++|+.+|++++...+.       ....++++|.++...|+...|...|.+++.+.+.|.
T Consensus       168 ~~~A~~~y~~A~~l~P~-------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPS-------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHHHCTT-------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             HHHHHHHHHHHHHHCCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence            88888888888754322       234567788888888888888888888888877775

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-08  Score=70.03  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCc-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEV-TTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      .-..++|.++.+.|++++|+.+|++|+++.+.... ....+.++.++|.++..+|++++|+.+|++++...
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            44568999999999999999999999999887543 35567899999999999999999999999998654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.8e-10  Score=98.19  Aligned_cols=212  Identities=6%  Similarity=-0.079  Sum_probs=139.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT---SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIA  119 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~---~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la  119 (289)
                      +...|++++|+.++.+++....+.      ..++...|.++...   ++++|+.++.+++++.+..     ....+..+|
T Consensus        83 ~~~~~~~~~al~~~~~~l~~~pk~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~  151 (334)
T d1dcea1          83 EESAALVKAELGFLESCLRVNPKS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRF  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCc------HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-----hhhhhhHHH
Confidence            334556788888888888764332      34556666666444   7899999999999985532     222456788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh----------ccccc
Q 022992          120 ELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLN----------NNLLK  189 (289)
Q Consensus       120 ~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------~~~~~  189 (289)
                      .++...+.+++|+.++++++.+.+..      ..++..+|.++..+|++++|+..++++......          .....
T Consensus       152 ~~~~~~~~~~~Al~~~~~~i~~~p~~------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~  225 (334)
T d1dcea1         152 VAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  225 (334)
T ss_dssp             HHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHhccccHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchh
Confidence            99998999999999999999886643      357889999999999888776544333211100          00000


Q ss_pred             cchhhH--------------HHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHcccCHHHHHHHHH
Q 022992          190 YGVKGH--------------LLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVK  255 (289)
Q Consensus       190 ~~~~~~--------------~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a~~~~d~~~~~~al~  255 (289)
                       .....              +..++.++...|+...|...+.++....|.     -......++..+.  +.+.+++|++
T Consensus       226 -~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~--~~~~~~eA~~  297 (334)
T d1dcea1         226 -QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-----CLLTIILLMRALD--PLLYEKETLQ  297 (334)
T ss_dssp             -SHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHC--TGGGHHHHHH
T ss_pred             -HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-----HHHHHHHHHHHHH--HCCCHHHHHH
Confidence             00000              112344555567777888887776654432     2244555666654  4567778888


Q ss_pred             hccccCCCchhHHHHHHHHHHhcc
Q 022992          256 EFDSMTPLDPWKTTLLLRVKEKLK  279 (289)
Q Consensus       256 ~~~~~~~~d~~~~~~~~~~~~~~~  279 (289)
                      .|..+..+||.....+..++..+.
T Consensus       298 ~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         298 YFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcccHHHHHHHHHHHh
Confidence            989898899988877776655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.7e-08  Score=69.79  Aligned_cols=86  Identities=5%  Similarity=0.036  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchH
Q 022992           74 QAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGR-LSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSA  151 (289)
Q Consensus        74 ~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~-~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~  151 (289)
                      ..+.++|.++.+. ++++|+.+|++|+.+.+.... ....+.++.++|.++...|++++|+.+|++|+++.+...     
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~-----   80 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ-----   80 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH-----
Confidence            3456778877665 999999999999999987643 334678999999999999999999999999999976542     


Q ss_pred             HHHHHHHHHHHHHh
Q 022992          152 NQCKQKVAQYAAEL  165 (289)
Q Consensus       152 ~~~~~~l~~~~~~~  165 (289)
                       .++.+++.+...+
T Consensus        81 -~a~~Nl~~~~~~l   93 (95)
T d1tjca_          81 -RANGNLKYFEYIM   93 (95)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHh
Confidence             4677776655443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.4e-09  Score=92.63  Aligned_cols=181  Identities=6%  Similarity=-0.043  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHH--------------HHHHc--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHH
Q 022992           27 SKYEDAADLFDKAAN--------------SFKLA--KSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSN   89 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~--------------~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~   89 (289)
                      +.+.+|..+|.++..              ++...  +++++|+.++.++++...+     .....+..+|.++... .++
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-----hhhhhhhHHHHHHHhccccH
Confidence            346778877777632              23333  4689999999999998432     2223455678888765 899


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----------CccchHHH------
Q 022992           90 EAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNE----------EVTTSANQ------  153 (289)
Q Consensus        90 ~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~----------~~~~~~~~------  153 (289)
                      +|+.++++++.+.+..      ..++.++|.++...|++++|+..+++++.+.+..          +.......      
T Consensus       162 ~Al~~~~~~i~~~p~~------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         162 EELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             HHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            9999999998886543      3478889999988888777666665555554421          01111111      


Q ss_pred             --------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCC
Q 022992          154 --------CKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPT  225 (289)
Q Consensus       154 --------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~  225 (289)
                              .+..++.++...|++.+|+..+.+++...       ......+..+|.++...|++++|...|+++++++|.
T Consensus       236 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         236 LGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence                    11246667788899999999998886221       123346778899999999999999999999999885

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.9e-08  Score=70.67  Aligned_cols=96  Identities=11%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 022992           39 AANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT----SSNEAISCLEQAVNMFCDIGRLSMAARY  114 (289)
Q Consensus        39 A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~----~~~~A~~~~~~A~~~~~~~g~~~~~a~~  114 (289)
                      .++.+...+++++|.+.|.+++.+....      ..++.+.|.++.+.    ++++|+..|++++..-    .....+.+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----~~~~~~~~   74 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----CCchHHHH
Confidence            3445556667777777777777663321      34666667666432    4556666666665421    12334556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          115 YKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       115 l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      +.++|.+|...|++++|+.+|++++++.+.
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            777777777777777777777777776554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.5e-08  Score=89.70  Aligned_cols=117  Identities=11%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 022992           49 WDKAGATYVKLANCHLK-LESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEH  126 (289)
Q Consensus        49 ~~~A~~~~~~a~~~~~~-~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g  126 (289)
                      ..+|...|..++..+.. .+-.......+.++|.++... ++++|+..+.+++.+.+        .+++.++|.++...|
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~  166 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRN  166 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcc
Confidence            45566667777665542 222334455677888888766 88999999999987654        368999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          127 NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       127 ~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ++++|+.+|++|+++.+..+      .+++++|.++...|++.+|+.+|.+++
T Consensus       167 ~~~~A~~~y~~A~~l~P~~~------~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         167 QTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             CHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999998877      578999999999999999999999997

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=4e-07  Score=76.18  Aligned_cols=176  Identities=10%  Similarity=0.050  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 022992           35 LFDKAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAAR  113 (289)
Q Consensus        35 ~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~  113 (289)
                      +....+.+....|+++.|...|.+++.....     .....+...+.+..+. ++++|++.|.+++...+....      
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-----~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~------  169 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH------  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH------
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------
Confidence            3344466777899999999999998865221     1223456666666555 899999999999877654433      


Q ss_pred             HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccccch
Q 022992          114 YYKEIAELY-ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGV  192 (289)
Q Consensus       114 ~l~~la~~~-~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  192 (289)
                      .+...|... ...|+++.|...|++++..++...      ..+...+.+....|++++|..+|++++.....++   ...
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~------~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~---~~~  240 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP------EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP---EKS  240 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG---GGC
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---HHH
Confidence            566666653 345899999999999999876542      5788889999999999999999999975432211   111


Q ss_pred             hhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCch
Q 022992          193 KGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTR  230 (289)
Q Consensus       193 ~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~  230 (289)
                      ...+.....--...|+...+.++++++.+..|......
T Consensus       241 ~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~  278 (308)
T d2onda1         241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccc
Confidence            22233333333456999999999999988877654433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.65  E-value=1.8e-08  Score=75.37  Aligned_cols=91  Identities=16%  Similarity=0.091  Sum_probs=69.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----------CHHHHHHHHHHHHHHHHhcCCHHHH
Q 022992           43 FKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----------SSNEAISCLEQAVNMFCDIGRLSMA  111 (289)
Q Consensus        43 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----------~~~~A~~~~~~A~~~~~~~g~~~~~  111 (289)
                      |...+.|++|+..|++++++....      +.++.++|.++...           .+++|+.+|++|+++-+...     
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~-----   75 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----   75 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcc------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh-----
Confidence            456677899999999999986532      56777778776532           46889999999999876543     


Q ss_pred             HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhcc
Q 022992          112 ARYYKEIAELYESEH-----------NIEQTIVFFEKAADMFQNE  145 (289)
Q Consensus       112 a~~l~~la~~~~~~g-----------~~~~A~~~y~~A~~~~~~~  145 (289)
                       .++.++|.+|..+|           ++++|+++|++|+++.+..
T Consensus        76 -~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~  119 (145)
T d1zu2a1          76 -EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  119 (145)
T ss_dssp             -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             -HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH
Confidence             47888999887654           3688888888888887643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=9e-06  Score=67.62  Aligned_cols=202  Identities=13%  Similarity=0.057  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Q 022992           31 DAADLFDKAANSFKLAKSW-------DKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMF  102 (289)
Q Consensus        31 ~A~~~~~~A~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~  102 (289)
                      ..+++...-+......|+.       +++...|.+|+....    + .....+...+.+.... ++++|...|++++...
T Consensus        55 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~----p-~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~  129 (308)
T d2onda1          55 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----K-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcC----C-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            4444444444444444444       444555555543321    1 1223556667777555 9999999999998653


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Q 022992          103 CDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA-AELEQYHKSIEIYEEIARQ  181 (289)
Q Consensus       103 ~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~  181 (289)
                      +..     ...++...+......|+++.|...|++|+...+...      ..+...+.+. ...|+.+.|..+|++++..
T Consensus       130 ~~~-----~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~------~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         130 DID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH------HVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             SSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             cCC-----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            322     234677888888888999999999999998765432      3556666654 3468999999999999854


Q ss_pred             HhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH-HcccCHHHHHHHHHh
Q 022992          182 SLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFSGTREYRLLSDIAAS-MDEEDIAKFTDVVKE  256 (289)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~~~~e~~~l~~l~~a-~~~~d~~~~~~al~~  256 (289)
                      ...+       ...+...+......||..+|+..|++++...+.-+... ..+....+.- ...||.+.+....++
T Consensus       199 ~p~~-------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~-~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         199 YGDI-------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC-HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhh-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3221       23445555666788999999999999988665432111 1222222221 136886555544443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.41  E-value=3.8e-07  Score=67.83  Aligned_cols=84  Identities=7%  Similarity=0.014  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhccCccchHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESE----------HNIEQTIVFFEKAADMFQNEEVTTSANQCKQ  156 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~----------g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~  156 (289)
                      .+++|+.+|++|+++.|.+-+      ++.++|.++...          +.+++|+.+|++|+++.+..      ..++.
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~------~~a~~   79 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDAD------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVW   79 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchH------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh------hHHHh
Confidence            689999999999999876544      788888887643          55689999999999986654      35788


Q ss_pred             HHHHHHHHhcC-----------HHHHHHHHHHHHHHH
Q 022992          157 KVAQYAAELEQ-----------YHKSIEIYEEIARQS  182 (289)
Q Consensus       157 ~l~~~~~~~g~-----------~~~A~~~~~~a~~~~  182 (289)
                      ++|.+|..+|+           |++|+++|++++...
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            99999987754           688999999988543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=1.5e-06  Score=66.86  Aligned_cols=63  Identities=10%  Similarity=-0.053  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 022992          111 AARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIA  179 (289)
Q Consensus       111 ~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  179 (289)
                      ...++.+++.++...|++++|+.++++++.+.+...      .++..++.++..+|++.+|++.|++..
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e------~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE------PLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccH------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            345788999999999999999999999999977543      588999999999999999999999985

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.28  E-value=4.3e-05  Score=61.59  Aligned_cols=92  Identities=11%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhc
Q 022992          114 YYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE----LEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       114 ~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      .+..+|.++..    ..+...+..+++++.+.    ++    ..+..++|.++..    ..++++|+.+|+++...    
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~----~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----  211 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----  211 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc----cc----cccccchhhhcccCcccccchhhhhhhHhhhhcc----
Confidence            34455666654    24456666666666542    11    2466777777765    45788888888777521    


Q ss_pred             cccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992          186 NLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM  222 (289)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~  222 (289)
                           +....++++|.+|..    ..|...|.+.|+++...
T Consensus       212 -----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         212 -----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             -----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                 112345667777653    23667777777777653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=7.6e-06  Score=62.83  Aligned_cols=102  Identities=9%  Similarity=-0.068  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-----cc-----------chHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 022992          113 RYYKEIAELYESEHNIEQTIVFFEKAADMFQNEE-----VT-----------TSANQCKQKVAQYAAELEQYHKSIEIYE  176 (289)
Q Consensus       113 ~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~-----~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  176 (289)
                      ..+.+.|..+...|++++|+.+|.+|+.+++..-     ..           .....++.+++.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4667777888888889999999999988876431     00           1123577889999999999999999999


Q ss_pred             HHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 022992          177 EIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQD  221 (289)
Q Consensus       177 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~  221 (289)
                      +++.....+       ...+..++.++...|+..+|...|+++..
T Consensus        92 ~al~~~P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          92 ALTFEHPYR-------EPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHSTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            998553221       23567788899999999999999999744

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.03  E-value=3.3e-06  Score=69.07  Aligned_cols=127  Identities=8%  Similarity=0.012  Sum_probs=89.9

Q ss_pred             HccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           83 YKKTSSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        83 ~~~~~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      +..+++++|+..|++++...+.+..      .+..+|.++...|++++|+..|++++++.+...      .....++.++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~------~~~~~l~~ll   74 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDAS------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYL------PGASQLRHLV   74 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH------HHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHH
Confidence            3445899999999999988776544      899999999999999999999999999876432      3556677776


Q ss_pred             HHhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          163 AELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       163 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      ...+..+++...+.+..  ...    .......+...+.++...||.++|...++++.+..|..+
T Consensus        75 ~a~~~~~~a~~~~~~~~--~~~----~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          75 KAAQARKDFAQGAATAK--VLG----ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHHHTTSCCCEE--CCC----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HhccccHHHHHHhhhhh--ccc----CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            66665555443322211  000    011112334456677788999999999999988887765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=0.00068  Score=54.17  Aligned_cols=191  Identities=11%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHHhcCCHHHHH
Q 022992           38 KAANSFKLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-----SSNEAISCLEQAVNMFCDIGRLSMAA  112 (289)
Q Consensus        38 ~A~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-----~~~~A~~~~~~A~~~~~~~g~~~~~a  112 (289)
                      ..|..+...+++++|+.+|++|++.    |+    +.++..+|.+|..+     ++.+|..+++.+...    +.+    
T Consensus         7 ~lG~~~~~~~d~~~A~~~~~kAa~~----g~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----~~~----   70 (265)
T d1ouva_           7 GLGAKSYKEKDFTQAKKYFEKACDL----KE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYS----   70 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH----
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----ccc----
Confidence            3455666677777777777777543    44    34566677777542     677777777765432    221    


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhc-------------cC-c--------------cchHHHHHHHHHH
Q 022992          113 RYYKEIAELYES----EHNIEQTIVFFEKAADMFQN-------------EE-V--------------TTSANQCKQKVAQ  160 (289)
Q Consensus       113 ~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~-------------~~-~--------------~~~~~~~~~~l~~  160 (289)
                      .....+|.++..    ..+.++|+.+|+++.+.-..             .. .              ...-...+..+|.
T Consensus        71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~  150 (265)
T d1ouva_          71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS  150 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence            223344444432    24556666666666432100             00 0              0001123455566


Q ss_pred             HHHH----hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhcCCCCCCchHH
Q 022992          161 YAAE----LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDMDPTFSGTREY  232 (289)
Q Consensus       161 ~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~~~~~~~~~e~  232 (289)
                      ++..    ..+...+..+++.+..         .+...+++++|.++..    ..|+..|...|.++.+..     ... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~---------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~-  215 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACD---------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGG-  215 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHH-
T ss_pred             hhccCCCcccccccchhhhhcccc---------ccccccccchhhhcccCcccccchhhhhhhHhhhhccc-----CHH-
Confidence            5554    2355555555555541         1223456778877765    468999999999987752     222 


Q ss_pred             HHHHHHHHHHcccC--HHHHHHHHHhcccc
Q 022992          233 RLLSDIAASMDEED--IAKFTDVVKEFDSM  260 (289)
Q Consensus       233 ~~l~~l~~a~~~~d--~~~~~~al~~~~~~  260 (289)
                       ....|+..+..|.  ...+..|++.|...
T Consensus       216 -a~~~LG~~y~~G~g~~~n~~~A~~~~~kA  244 (265)
T d1ouva_         216 -GCFNLGAMQYNGEGVTRNEKQAIENFKKG  244 (265)
T ss_dssp             -HHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence             3456777665442  22333444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.88  E-value=3e-05  Score=56.14  Aligned_cols=78  Identities=10%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHH
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYES----EHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYA  162 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~----~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~  162 (289)
                      ++++|+.++++|.+.    |+    +.+...+|.+|..    ..++++|+++|++|++.-.        +.+...||.+|
T Consensus        38 ~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--------~~a~~~Lg~~y  101 (133)
T d1klxa_          38 NKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND--------QDGCLILGYKQ  101 (133)
T ss_dssp             CHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc--------chHHHHHHHHH
Confidence            566666666666532    33    2345556666553    2456666666666666521        13455666666


Q ss_pred             HH----hcCHHHHHHHHHHHHH
Q 022992          163 AE----LEQYHKSIEIYEEIAR  180 (289)
Q Consensus       163 ~~----~g~~~~A~~~~~~a~~  180 (289)
                      ..    ..++.+|+++|+++..
T Consensus       102 ~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_         102 YAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HcCCccCCCHHHHHHHHHHHHH
Confidence            54    6666666666666643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.80  E-value=0.0002  Score=51.55  Aligned_cols=109  Identities=12%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHH--
Q 022992           87 SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAE--  164 (289)
Q Consensus        87 ~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~--  164 (289)
                      |+++|+.+|++|.+.    |++.    +...++..  ...++++|+.+|++|.+.    |.    +.+...||.+|..  
T Consensus         8 d~~~A~~~~~kaa~~----g~~~----a~~~l~~~--~~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~~g~   69 (133)
T d1klxa_           8 DLKKAIQYYVKACEL----NEMF----GCLSLVSN--SQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHHT----TCTT----HHHHHHTC--TTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHC----CChh----hhhhhccc--cccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhhhcc
Confidence            788999999999754    4432    34445543  337899999999999864    22    2467889999875  


Q ss_pred             --hcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHc----cCCHHHHHHHHHHHhhc
Q 022992          165 --LEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLC----KGDVVAITNALERYQDM  222 (289)
Q Consensus       165 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~----~gd~~~A~~~~~~~~~~  222 (289)
                        ..++++|+++|+++...         +.....+++|.+|..    ..|...|...|+++.+.
T Consensus        70 ~~~~d~~~A~~~~~~aa~~---------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGL---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHhhhhcc---------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence              45899999999999732         223346778888764    35889999999998764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.002  Score=45.30  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHccCCHHHHHHHHHHHhhcCCCCC
Q 022992          152 NQCKQKVAQYAAEL---EQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQDMDPTFS  227 (289)
Q Consensus       152 ~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~~~A~~~~~~~~~~~~~~~  227 (289)
                      .++.+++|.++++.   .+.++++.+++++....   +   ......++.+|+.|...||++.|.+++++++++.|...
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~---p---~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---E---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---G---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC---c---hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            57889999999865   56789999999987431   1   12346778899999999999999999999999988754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.04  E-value=0.00022  Score=57.86  Aligned_cols=122  Identities=10%  Similarity=-0.056  Sum_probs=83.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 022992           44 KLAKSWDKAGATYVKLANCHLKLESKHEAAQAYVDAAHCYKKT-SSNEAISCLEQAVNMFCDIGRLSMAARYYKEIAELY  122 (289)
Q Consensus        44 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~aa~~~~~~a~~~~~~-~~~~A~~~~~~A~~~~~~~g~~~~~a~~l~~la~~~  122 (289)
                      ...|++++|+..|.++++.....      +..+..++.++... ++++|+..|++++++.+...      .....++.++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~------~~~~~l~~ll   74 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKD------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL------PGASQLRHLV   74 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH------HHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHH
Confidence            35689999999999998875432      55778888888766 99999999999999876432      3555556655


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 022992          123 ESEHNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQS  182 (289)
Q Consensus       123 ~~~g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  182 (289)
                      ...+..+++...+.++..    .+.+ .....+...+.++...|++++|.+.++++....
T Consensus        75 ~a~~~~~~a~~~~~~~~~----~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          75 KAAQARKDFAQGAATAKV----LGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHTTSCCCEEC----CCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HhccccHHHHHHhhhhhc----ccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            543333333222211111    1122 233456667888999999999999999987544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.0055  Score=43.01  Aligned_cols=70  Identities=9%  Similarity=0.028  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 022992          111 AARYYKEIAELYESE---HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNN  185 (289)
Q Consensus       111 ~a~~l~~la~~~~~~---g~~~~A~~~y~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  185 (289)
                      ...+..+.|.++...   .+..++|.++++++...     +....+++..+|..|.++|+|++|.+++++++...+.+
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            356667777777643   55678999998887542     23345899999999999999999999999998665443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.68  E-value=0.16  Score=31.95  Aligned_cols=38  Identities=16%  Similarity=0.058  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          107 RLSMAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       107 ~~~~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      .|...|..+..-|.-+...|.|++||+++++|+..+.+
T Consensus         3 sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           3 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            45556667777777777778999999999888887654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=1.2  Score=28.89  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 022992          110 MAARYYKEIAELYESEHNIEQTIVFFEKAADMFQN  144 (289)
Q Consensus       110 ~~a~~l~~la~~~~~~g~~~~A~~~y~~A~~~~~~  144 (289)
                      ..|..+.+-|.-+...|+|++|+.+|.+|++++..
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34555566667777779999999999999998754

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.55  E-value=0.9  Score=28.45  Aligned_cols=21  Identities=14%  Similarity=0.078  Sum_probs=9.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHH
Q 022992           42 SFKLAKSWDKAGATYVKLANC   62 (289)
Q Consensus        42 ~~~~~g~~~~A~~~~~~a~~~   62 (289)
                      .+...|.|++|++|+.+|++.
T Consensus        17 r~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1          17 RLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            334444555555555554444

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.22  E-value=0.97  Score=29.28  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 022992           27 SKYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCHLK   65 (289)
Q Consensus        27 ~~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~~~   65 (289)
                      ++...|+++..+|-.. ...|+|++|+.+|.++++.+..
T Consensus        10 ~~~~~A~~l~~~Av~~-D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVEL-DAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHH
Confidence            6677888876666555 5778999999999999888753

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.98  E-value=0.68  Score=28.89  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=18.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 022992          116 KEIAELYESEHNIEQTIVFFEKAADMFQ  143 (289)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~y~~A~~~~~  143 (289)
                      .+-|.-....|+|++|+.+|.+|++++.
T Consensus        15 ~~~Av~~D~~~~y~~A~~~Y~~a~~~l~   42 (77)
T d1wr0a1          15 ASKAAQEDKAGNYEEALQLYQHAVQYFL   42 (77)
T ss_dssp             HHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3344445555777777777777777654

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=0.89  Score=28.29  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 022992           28 KYEDAADLFDKAANSFKLAKSWDKAGATYVKLANCH   63 (289)
Q Consensus        28 ~~~~A~~~~~~A~~~~~~~g~~~~A~~~~~~a~~~~   63 (289)
                      ..++|.++..+|-.. ...|+|++|+.+|..|++.+
T Consensus         7 ~l~~A~~l~~~Av~~-D~~~~y~~A~~~Y~~a~~~l   41 (77)
T d1wr0a1           7 NLQKAIDLASKAAQE-DKAGNYEEALQLYQHAVQYF   41 (77)
T ss_dssp             HHHHHHHHHHHHHHH-HHTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Confidence            344455544444332 34455555555555555554