Citrus Sinensis ID: 022994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccEEEcccHHHHHHHEEHHHHcHHHHEEEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
mnsltakpcfiyqppsssvtvvscrpklfssvrcpiktkknnngrLALRIQAYdssknesnnngsndskppngalpkgrRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNmigtlppqfFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQvalpevldkkdtpdyapgtqknvsgevfrwnnvsgpekidAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKtlepqnlkvrSVASLFIISVVFLAYVGQVDVFLLIGIlpagscifqyd
Flexible Loop (DISEMBL)
mnsltakpcfiyqppsssvtvvsCRPKlfssvrcpiktkknnngrlaLRIQAYDSsknesnnngsndskppngalPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEvldkkdtpdyapgtqknvsgevfrwnnvsgpekiDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Low Complexity Region (SEG)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYdssknesnnngsndskPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Disordered region (IsUnstruct)
********CFIYQPPSSSVTVVSCRPKLFSSVRCPIKT********AL********************************DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEV*****************SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQ**
Disordered Region (DISOPRED)
**********************************************************************************LLEYVKNVQPEFMELF*K*A*EQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLEL********************************************IDAKKYIEF************************EYLKTLEP**********LFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Disordered Region (DISEMBL)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDS**************PPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Disordered Region (DISPRO)
******KPC*******SSVT*********SSVRCPIKT**NNNGRLALRIQAYDS************************RDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQV***********************GEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPExxxxxxxxxxxxxxxxxxxxxxxxxxxxGQNELLEYLKTLEPQNLKVRSVASLFIISVVFLAYVGQVDVFLLIGILPAGSCIFQYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
225459864	333	PREDICTED: uncharacterized protein LOC10	0.778	0.675	0.804	4e-93
358248580	345	uncharacterized protein LOC100815202 [Gl	0.754	0.631	0.802	3e-91
449452967	331	PREDICTED: uncharacterized protein LOC10	0.723	0.631	0.823	1e-88
255539126	348	conserved hypothetical protein [Ricinus	0.785	0.652	0.810	7e-88
356517424	341	PREDICTED: uncharacterized protein LOC10	0.712	0.604	0.822	3e-87
118487779	343	unknown [Populus trichocarpa]	0.782	0.658	0.804	5e-87
388491314	341	unknown [Lotus japonicus]	0.712	0.604	0.784	1e-85
224083247	308	predicted protein [Populus trichocarpa]	0.761	0.714	0.812	6e-85
326510833	330	predicted protein [Hordeum vulgare subsp	0.653	0.572	0.794	9e-83
224065695	340	predicted protein [Populus trichocarpa]	0.778	0.661	0.777	1e-82

>gi|225459864|ref|XP_002285932.1| PREDICTED: uncharacterized protein LOC100247161 [Vitis vinifera] gi|302141665|emb|CBI18868.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 202/230 (87%), Gaps = 5/230 (2%)

Query: 21  VVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGAL-PKGR 79
           +V  R +L+SS+R P K K  + GR ALR Q+++S  N S+N  +NDSKPPNG+  PK R
Sbjct: 24  LVLNRSQLYSSIRFPRKRK--SRGRFALRAQSFESPPNNSSN--ANDSKPPNGSFQPKSR 79

Query: 80  RDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ 139
           RDILLEYVKNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ
Sbjct: 80  RDILLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ 139

Query: 140 LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNV 199
           LMYSVMMTGYMFKNAQYRLELQQSLEQ ALPEV +KKD  DYAPGTQKNVSGEV RWNNV
Sbjct: 140 LMYSVMMTGYMFKNAQYRLELQQSLEQAALPEVQEKKDDQDYAPGTQKNVSGEVIRWNNV 199

Query: 200 SGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           SG EKIDA KYIE LEAE+EELNRQ+GRK+ NGQNELLEYLK+LEPQNLK
Sbjct: 200 SGLEKIDAVKYIELLEAEVEELNRQVGRKSANGQNELLEYLKSLEPQNLK 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248580|ref|NP_001240161.1| uncharacterized protein LOC100815202 [Glycine max] gi|255641632|gb|ACU21088.1| unknown [Glycine max]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 179/223 (80%), Positives = 198/223 (88%), Gaps = 5/223 (2%)

Query: 30  SSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGS--NDSKPPNGALPKGRRDILLEYV 87
           SS+  P   K  + GR  LR++AYDSS N+++N  S   DSKPPNG L K RR+ILLEYV
Sbjct: 41  SSISFPRNLK--HKGRFGLRVEAYDSSNNDTSNPASAGGDSKPPNGTLSKSRREILLEYV 98

Query: 88  KNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
           KNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYS+MMT
Sbjct: 99  KNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSIMMT 158

Query: 148 GYMFKNAQYRLELQQSLEQ-VALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKID 206
           GYMFKNAQYRLELQ+ LEQ VALP+V DKKD PDYAPGTQKNVSGEV RWNNVSGPEKID
Sbjct: 159 GYMFKNAQYRLELQEGLEQVVALPDVQDKKDVPDYAPGTQKNVSGEVIRWNNVSGPEKID 218

Query: 207 AKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           AKKYIE LEAEIEELNRQ+GR+++NGQNELLEYLK+LEP+NLK
Sbjct: 219 AKKYIELLEAEIEELNRQVGRQSSNGQNELLEYLKSLEPRNLK 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452967|ref|XP_004144230.1| PREDICTED: uncharacterized protein LOC101214493 [Cucumis sativus] gi|449489317|ref|XP_004158277.1| PREDICTED: uncharacterized protein LOC101231379 [Cucumis sativus]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 40  KNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFV 99
           K  NG ++ R++AYDSSK+++++  S DSKPPNG LPK RRDILLEYVKNVQPEFMELFV
Sbjct: 39  KPRNG-VSFRLRAYDSSKSDNSDASSADSKPPNGTLPKTRRDILLEYVKNVQPEFMELFV 97

Query: 100 KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE 159
           ++AP+QVV+AMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQ RLE
Sbjct: 98  QKAPQQVVEAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQNRLE 157

Query: 160 LQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIE 219
           LQQSLEQVALPE  D+KD  +YA GTQKNV+GEV RWNNVSGPE IDAK+YIE LEAEIE
Sbjct: 158 LQQSLEQVALPEPKDEKDDSNYAAGTQKNVTGEVIRWNNVSGPESIDAKRYIELLEAEIE 217

Query: 220 ELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           ELNRQ+GRK+TNGQNELLEYLKTLEPQNLK
Sbjct: 218 ELNRQVGRKSTNGQNELLEYLKTLEPQNLK 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539126|ref|XP_002510628.1| conserved hypothetical protein [Ricinus communis] gi|223551329|gb|EEF52815.1| conserved hypothetical protein [Ricinus communis]

 Score =  329 bits (844), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 206/232 (88%), Gaps = 5/232 (2%)

Query: 18  SVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPK 77
           S  ++S RP    S+    K   +  GRL LRI+AYDSSKN+S++N S DSKPP+ +LPK
Sbjct: 38  STFILSGRP----SISFSRKRNTSIKGRLGLRIRAYDSSKNDSSSN-SADSKPPSSSLPK 92

Query: 78  GRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137
            R+DILLEYVKNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL
Sbjct: 93  TRKDILLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 152

Query: 138 AQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWN 197
           AQLMYSVMMTGYMFKNAQYR+ELQQSLEQVALPEV +KKD PDYAPGTQKNVSGEV RWN
Sbjct: 153 AQLMYSVMMTGYMFKNAQYRMELQQSLEQVALPEVEEKKDVPDYAPGTQKNVSGEVIRWN 212

Query: 198 NVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           NVSG EK+DAKKYIE LEAEIEELNRQ+GRK+TNGQNELLEYLK+LEPQNLK
Sbjct: 213 NVSGAEKMDAKKYIELLEAEIEELNRQVGRKSTNGQNELLEYLKSLEPQNLK 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517424|ref|XP_003527387.1| PREDICTED: uncharacterized protein LOC100783908 [Glycine max]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/208 (82%), Positives = 189/208 (90%), Gaps = 2/208 (0%)

Query: 44  GRLALRIQAYDSSKNESNNNGS-NDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRA 102
           GR  LR++AYDSS N+++N  S  DSKPPNG L K RR+ILLEYVKNVQPEFMELFVKRA
Sbjct: 50  GRFGLRVEAYDSSNNDNSNPASAGDSKPPNGTLSKSRREILLEYVKNVQPEFMELFVKRA 109

Query: 103 PEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQ 162
           P+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYS+MMTGYMFKNAQYRLELQ+
Sbjct: 110 PQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSIMMTGYMFKNAQYRLELQE 169

Query: 163 SLEQ-VALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEEL 221
           SLEQ VALP+V DKKD PD+A GTQKNVSGEV RWNNVSGPEKIDAKKYIE LEAEIEEL
Sbjct: 170 SLEQVVALPDVQDKKDVPDFASGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEEL 229

Query: 222 NRQLGRKATNGQNELLEYLKTLEPQNLK 249
           + Q+GR+ +N QNELLEYLK+LEP+NLK
Sbjct: 230 SCQVGRQTSNAQNELLEYLKSLEPRNLK 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487779|gb|ABK95713.1| unknown [Populus trichocarpa]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 203/230 (88%), Gaps = 4/230 (1%)

Query: 24  CRPKLFSSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS-NDSKPPNGAL-PKGRR 80
            RP+L SSV  P  K K  NNGRL  R++AYDSSK++S++N    D+KPPNG++ PK RR
Sbjct: 30  TRPRLCSSVSFPRNKEKYCNNGRLGFRVKAYDSSKDDSSSNNKSGDAKPPNGSVQPKNRR 89

Query: 81  DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQL 140
           +ILLEYVKNVQPEFMELFVKRAP QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQL
Sbjct: 90  EILLEYVKNVQPEFMELFVKRAPPQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQL 149

Query: 141 MYSVMMTGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNV 199
           MYSVMMTGYMFKNAQ+RLELQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNV
Sbjct: 150 MYSVMMTGYMFKNAQHRLELQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVLRWNNV 209

Query: 200 SGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           SGPE+IDAKKYIE LEAEIEELN Q+GRK  NGQNELLEYLK+LEPQNLK
Sbjct: 210 SGPERIDAKKYIELLEAEIEELNSQVGRKTANGQNELLEYLKSLEPQNLK 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491314|gb|AFK33723.1| unknown [Lotus japonicus]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/209 (78%), Positives = 185/209 (88%), Gaps = 3/209 (1%)

Query: 41  NNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVK 100
           N  GR  LR++AYDSS N +   G ++SKPPNG L K RR+ILLEYVKNVQPEFME+FVK
Sbjct: 52  NRKGRSPLRVEAYDSSTNPA---GDSNSKPPNGTLSKSRREILLEYVKNVQPEFMEMFVK 108

Query: 101 RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLEL 160
           RAP+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAEN AQLMYSVMMTGYMFKNAQYRLEL
Sbjct: 109 RAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENPAQLMYSVMMTGYMFKNAQYRLEL 168

Query: 161 QQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEE 220
           Q+ LE VALP+V DKKD PDYA G ++NVSGEV RWN+VSGPE+IDAKKYIE LE EIEE
Sbjct: 169 QEGLEHVALPDVQDKKDKPDYALGHKRNVSGEVLRWNHVSGPERIDAKKYIELLEVEIEE 228

Query: 221 LNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           LNRQ+GR+++N QNELLEYLK+LEP+NLK
Sbjct: 229 LNRQVGRQSSNAQNELLEYLKSLEPRNLK 257

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083247|ref|XP_002306971.1| predicted protein [Populus trichocarpa] gi|222856420|gb|EEE93967.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 182/224 (81%), Positives = 199/224 (88%), Gaps = 4/224 (1%)

Query: 30  SSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS-NDSKPPNGAL-PKGRRDILLEY 86
           SSV  P  K K  NNGRL  R++AYDSSK++S++N    D+KPPNG++ PK RR+ILLEY
Sbjct: 1   SSVSFPRNKEKYCNNGRLGFRVKAYDSSKDDSSSNNKSGDAKPPNGSVQPKNRREILLEY 60

Query: 87  VKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMM 146
           VKNVQPEFMELFVKRAP QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYSVMM
Sbjct: 61  VKNVQPEFMELFVKRAPPQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSVMM 120

Query: 147 TGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKI 205
           TGYMFKNAQ+RLELQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNVSGPE+I
Sbjct: 121 TGYMFKNAQHRLELQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVLRWNNVSGPERI 180

Query: 206 DAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           DAKKYIE LEAEIEELN Q+GRK  NGQNELLEYLK+LEPQNLK
Sbjct: 181 DAKKYIELLEAEIEELNSQVGRKTANGQNELLEYLKSLEPQNLK 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510833|dbj|BAJ91764.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  312 bits (800), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 164/190 (86%)

Query: 60  SNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIG 119
           +  NG N     N  LPK RRDILLEYVK VQPEFMELFVKRAP QVVDAMR TVTNMIG
Sbjct: 50  AGTNGVNGDAGANNNLPKNRRDILLEYVKGVQPEFMELFVKRAPTQVVDAMRHTVTNMIG 109

Query: 120 TLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTP 179
           TLPPQFFAVTVTTVAENLAQLMYSV+MTGYMF+NAQYRLELQQSLEQ+ALPE  ++KD+ 
Sbjct: 110 TLPPQFFAVTVTTVAENLAQLMYSVLMTGYMFRNAQYRLELQQSLEQIALPEPKEEKDSE 169

Query: 180 DYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEY 239
           DYAPGTQK VSGEV RWN  +GPEKIDA KYIE LEAEI+EL+RQ+ RK++ G NELLEY
Sbjct: 170 DYAPGTQKKVSGEVIRWNKTTGPEKIDAVKYIELLEAEIDELSRQVARKSSQGSNELLEY 229

Query: 240 LKTLEPQNLK 249
           LKTLEPQNLK
Sbjct: 230 LKTLEPQNLK 239

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065695|ref|XP_002301925.1| predicted protein [Populus trichocarpa] gi|222843651|gb|EEE81198.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 198/229 (86%), Gaps = 4/229 (1%)

Query: 25  RPKLFSSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS--NDSKPPNGALPKGRRD 81
           R +L SSV  P  K    +  R   R++AYDSSKN+S++N +   D+KPPNG +PK RR+
Sbjct: 28  RSRLCSSVCFPGNKGSYCSERRFGFRVKAYDSSKNDSSSNNNNSGDAKPPNGTMPKTRRE 87

Query: 82  ILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLM 141
           ILLEYVKNVQPEFMELFVKR+P+QVVDAMRQTV NMIGTLPPQFFAVTVTTVAENLAQLM
Sbjct: 88  ILLEYVKNVQPEFMELFVKRSPQQVVDAMRQTVANMIGTLPPQFFAVTVTTVAENLAQLM 147

Query: 142 YSVMMTGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNVS 200
           YSVMMTGYMFKNAQYRL+LQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNVS
Sbjct: 148 YSVMMTGYMFKNAQYRLDLQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVIRWNNVS 207

Query: 201 GPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           GPE+IDAKKYIE LEAEIEELN Q+GRK+ NGQNELLEYLK+LEP NLK
Sbjct: 208 GPERIDAKKYIELLEAEIEELNSQVGRKSANGQNELLEYLKSLEPLNLK 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2026669	341	AT1G63610 "AT1G63610" [Arabido	0.847	0.718	0.670	2.9e-80
TAIR|locus:2060495	386	AT2G14910 [Arabidopsis thalian	0.543	0.406	0.290	3.3e-10
TAIR|locus:2147875	355	AT5G14970 "AT5G14970" [Arabido	0.498	0.405	0.272	7.9e-10
GENEDB_PFALCIPARUM|PFE1330c	796	PFE1330c "hypothetical protein	0.522	0.189	0.246	4.6e-06
UNIPROTKB|Q8I3J8	796	PFE1330c "Putative uncharacter	0.522	0.189	0.246	4.6e-06

TAIR|locus:2026669 AT1G63610 "AT1G63610" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 175/261 (67%), Positives = 197/261 (75%)

Query:     1 MNSLTAKPCFIYQPPSSSVT--VVSCRPKLF---SSVRCPIKT---KKNNNGRL-ALRIQ 51
             M SL+ +   +  PPS      + +  PKL    SSV  P+KT   K +  G L  LR++
Sbjct:     1 MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVK 60

Query:    52 AYXXXXXXXXXXXXXXXXPPNGAL--PKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDA 109
             AY                PPNG    PK RRDILLEYV+NV+PEFME+FVKRAP+ VV+A
Sbjct:    61 AYGSSSDSSADSST----PPNGTRQQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEA 116

Query:   110 MRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVAL 169
             MRQTVTNMIGTLPPQFFAVTVT+VAENLAQLM SV+MTGYMF+NAQYRLELQQSLEQVAL
Sbjct:   117 MRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVAL 176

Query:   170 PEVLDKKD-TPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRK 228
             PE  D+K    DYAPGTQKNVSGEV RWNNVSGPEKIDAKKYIE LEAEIEELNRQ+GRK
Sbjct:   177 PEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELNRQVGRK 236

Query:   229 ATNGQNELLEYLKTLEPQNLK 249
             + N QNE+LEYLK+LEPQNLK
Sbjct:   237 SANQQNEILEYLKSLEPQNLK 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2060495 AT2G14910 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 48/165 (29%), Positives = 92/165 (55%)

Query:    79 RRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138
             ++ +L + ++ ++P  + L  K  P   +DAM++T++ M+G LP   F V + ++ E L+
Sbjct:    77 KKCVLSDLIQEIEPLDVSLIQKDVPVTTLDAMKRTISGMLGLLPSDRFQVHIESLWEPLS 136

Query:   139 QLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDY-APGT---QKNVSGEV- 193
             +L+ S MMTGY  +NA+YRL L+++L+           +  +Y   GT   + +VS +  
Sbjct:   137 KLLVSSMMTGYTLRNAEYRLFLEKNLDMSGGGLDSHASENTEYDMEGTFPDEDHVSSKRD 196

Query:   194 FRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLE 238
              R  N+S  E ID ++ +  + +E +E   +L  + ++ + EL E
Sbjct:   197 SRTQNLS--ETID-EEGLGRVSSEAQEYILRLQSQLSSVKKELQE 238

GO:0009507 "chloroplast" evidence=ISM

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2147875 AT5G14970 "AT5G14970" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
 Identities = 42/154 (27%), Positives = 81/154 (52%)

Query:    82 ILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLM 141
             ++   V  +QP    +  K   +   D+M+QT+++M+G LP   F+V+VT   + L +L+
Sbjct:    79 VIANLVNRIQPLDTSVISKGLSDSAKDSMKQTISSMLGLLPSDQFSVSVTISEQPLYRLL 138

Query:   142 YSVMMTGYMFKNAQYRLELQQSLEQVALP--EVLDKKDTPDYAPGTQKNVSGE----VFR 195
              S ++TGY   NA+YR+ L+++ +    P  E  D+    +   G++K +S +    V  
Sbjct:   139 ISSIITGYTLWNAEYRVSLRRNFDIPIDPRKEEEDQSSKDNVRFGSEKGMSEDLGNCVEE 198

Query:   196 WNNVS----GPEKIDAKKYIEFLEAEIEELNRQL 225
             +  +S    G    +A  YI+ L++E+  +  +L
Sbjct:   199 FERLSPQVFGDLSPEALSYIQLLQSELSSMKEEL 232

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PFE1330c PFE1330c "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 39/158 (24%), Positives = 75/158 (47%)

Query:    89 NVQP-EFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
             ++ P E +  F +   E+V +A++  + N+IG +       ++    E +   +  +++T
Sbjct:   462 SISPNELINRFFENTSERVKEAVKNIIFNIIGNIQKYTIETSILITYEKIYNFLLQIILT 521

Query:   148 GYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDA 207
             GYM KNA YRL L +SL       +L+KKD  D     Q++V+ +  + N     +  + 
Sbjct:   522 GYMIKNADYRLTLNESLYDQN--NILNKKDY-DQQEDEQEDVNKQKQQNNQYQEDDLFNL 578

Query:   208 KKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEP 245
             KK    L ++   +N  +  +  N + E+L     + P
Sbjct:   579 KKSFHTLFSD-NNINN-ISEEQLN-KGEMLNSKHIINP 613

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I3J8 PFE1330c "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 39/158 (24%), Positives = 75/158 (47%)

Query:    89 NVQP-EFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
             ++ P E +  F +   E+V +A++  + N+IG +       ++    E +   +  +++T
Sbjct:   462 SISPNELINRFFENTSERVKEAVKNIIFNIIGNIQKYTIETSILITYEKIYNFLLQIILT 521

Query:   148 GYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDA 207
             GYM KNA YRL L +SL       +L+KKD  D     Q++V+ +  + N     +  + 
Sbjct:   522 GYMIKNADYRLTLNESLYDQN--NILNKKDY-DQQEDEQEDVNKQKQQNNQYQEDDLFNL 578

Query:   208 KKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEP 245
             KK    L ++   +N  +  +  N + E+L     + P
Sbjct:   579 KKSFHTLFSD-NNINN-ISEEQLN-KGEMLNSKHIINP 613


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      289       273    0.0010  114 3  11 22  0.48    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  170 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.88u 0.19s 25.07t   Elapsed:  00:00:01
  Total cpu time:  24.88u 0.19s 25.07t   Elapsed:  00:00:01
  Start:  Sat May 11 06:01:44 2013   End:  Sat May 11 06:01:45 2013

GO:0020011 "apicoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015569001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (333 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.546
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.543
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.530
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.526
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.510
	GSVIVG00037743001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (178 aa)			•	•					0.504
	GSVIVG00034756001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_72, whole genome shotg [...] (213 aa)			•						0.503
	GSVIVG00023726001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (204 aa)			•						0.503
	GSVIVG00019961001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (204 aa)			•						0.503
	GSVIVG00007087001	SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (194 aa)			•						0.503

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam05542	85	pfam05542, DUF760, Protein of unknown function (DU	4e-35

>gnl|CDD|203271 pfam05542, DUF760, Protein of unknown function (DUF760)

 Score =  121 bits (306), Expect = 4e-35
 Identities = 38/84 (45%), Positives = 60/84 (71%)

Query: 81  DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQL 140
           ++LL+Y++++ PE +      A  +V++AMR+ V+ ++G+LP   F VT+ T  ENLAQL
Sbjct: 1   NVLLQYIQSLPPETLARLADSASPEVLEAMRRNVSGLLGSLPSDHFEVTIQTSRENLAQL 60

Query: 141 MYSVMMTGYMFKNAQYRLELQQSL 164
           + S MMTGY  +NA+ RLEL++SL
Sbjct: 61  LASSMMTGYFLRNAEQRLELERSL 84

This family contains several uncharacterized plant proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	100.0
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	95.42

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=100.00  E-value=4.8e-34  Score=223.14  Aligned_cols=85  Identities=44%  Similarity=0.733  Sum_probs=83.6

Q ss_pred             hHHHHHHHhcCchHHHHHhccCCHHHHHHHHHHHHHhhcCC-CCCCcceEEEEcHHhHHHHHHHHHhhhHhhcchhhhhH
Q 022994           81 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE  159 (289)
Q Consensus        81 N~Ll~YLqsl~Pe~is~lsk~aSpeV~eaM~qtV~gLLG~L-P~d~F~vtItTsrE~LArLL~SaMMTGYfLRNAEyRL~  159 (289)
                      |.||+|||+++||.+++|++++||||+|+|+++|++|||.+ |+++|+++|+|+|++||+|++|+|||||||||||||++
T Consensus         1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~   80 (86)
T PF05542_consen    1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE   80 (86)
T ss_pred             ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 022994          160 LQQSLE  165 (289)
Q Consensus       160 LErsL~  165 (289)
                      ||++|.
T Consensus        81 Le~sL~   86 (86)
T PF05542_consen   81 LERSLK   86 (86)
T ss_pred             HHHhcC
Confidence            999974

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=95.42  E-value=0.0044  Score=48.90  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=25.7

Q ss_pred             chHHHHhhcCCCccccccccccccchhh
Q 022994          234 NELLEYLKTLEPQNLKVRSVASLFIISV  261 (289)
Q Consensus       234 NdLLdYLRSL~Pe~v~ELS~~s~~~~~~  261 (289)
                      |+|++|||+++|+.+++|+++.||-+--
T Consensus         1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e   28 (86)
T PF05542_consen    1 NDLLQYIQSLKPERIQQLSEPASPEVLE   28 (86)
T ss_pred             ChHHHHHHHCCHHHHHHhhccCCHHHHH
Confidence            8999999999999999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	80.4

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=80.40  E-value=1.5  Score=32.68  Aligned_cols=23  Identities=13%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh
Q 022994          206 DAKKYIEFLEAEIEELNRQLGRK  228 (289)
Q Consensus       206 dA~~YI~~LesEl~eL~~q~~~~  228 (289)
                      .|.+||..|+.++++|+.++.+.
T Consensus        54 ~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           54 KATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	86.87

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.2  Score=34.25  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhh
Q 022994          205 IDAKKYIEFLEAEIEELNRQLGRK  228 (289)
Q Consensus       205 ~dA~~YI~~LesEl~eL~~q~~~~  228 (289)
                      -+|-+||..|+.++.+|+.+..+.
T Consensus        29 ~~Ai~YI~~Lq~~~~~L~~e~~~L   52 (61)
T d1uklc_          29 RKAIDYIKYLQQVNHKLRQENMVL   52 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999887653