Citrus Sinensis ID: 023003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHEEccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHcEEccHHHcccccEEEEEcHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHEEEEEEHHHEEEEcccccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQRLLSLKQLASKsnflknptnftfskpftchpnvqkrplssfskhpfhptfswrsqqslslktHAFLFNPLLARRFFTSLLSSQLRKsffdgkvlffraqfpersfaSFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRiadpkfmannftISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMsigrtlgpEYLLKLYMAGAIGGSVFYLVYHAFLAMSskrqgmwvvdpsrtpalgvfLIGKDMLRIIEgnsnisgsahLGGAAVAALAWARIRRRGF
Flexible Loop (DISEMBL)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFfraqfpersfasFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Low Complexity Region (SEG)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISgsahlggaavaalawarirrrgF
Disordered region (IsUnstruct)
**********************FTFSKPFTCH***************FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARI*****
Disordered Region (DISOPRED)
*********LA****************************************************THAFLFNPLLARRFFTSLLSSQL***************************WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Disordered Region (DISEMBL)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Disordered Region (DISPRO)
**RLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQRLLSLKQLASKSNFLKNPTNFTFSKPFTCHPNVQKRPLSSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
P53259	346	Rhomboid protein 1, mitoc	yes	no	0.335	0.280	0.346	1e-08
Q58EK4	383	Presenilins-associated rh	yes	no	0.301	0.227	0.366	4e-06
Q5R5H4	379	Presenilins-associated rh	yes	no	0.446	0.340	0.326	1e-05
Q9H300	379	Presenilins-associated rh	yes	no	0.446	0.340	0.326	1e-05
Q2KHV4	377	Presenilins-associated rh	yes	no	0.449	0.344	0.323	1e-05
Q5XJY4	377	Presenilins-associated rh	yes	no	0.449	0.344	0.316	4e-05
Q3B8P0	377	Presenilins-associated rh	yes	no	0.449	0.344	0.316	4e-05

>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 1/98 (1%)

Query: 125 EVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
            +VY L+  N AVF LW++         + +   ++++ ++ ++I SAFSH +  H+  N
Sbjct: 144 NLVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKDYVTSKI-SIIGSAFSHQEFWHLGMN 202

Query: 185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
           M+ L+ FG S+   LG      LYM  AI GS+F L Y
Sbjct: 203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240

Mitochondrial rhomboid serine protease processing the mitochondrial membrane fusion regulator MGM1, and the cytochrome c peroxidase (CCP1). Required for TIM11 stability, ATP synthase complex assembly, mitochondrial morphology, cytochrome c (CYC1) storage and mitochondrial genome maintenance.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 125 EVVYGLIIANTAVFMLWRI-ADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVS 183
           + V G+I  NT V   WR+ A  +F+   FT +  +    R   ++ S+FSH  V H+V 
Sbjct: 168 KTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS--KTRCLPMVLSSFSHYSVIHMVV 225

Query: 184 NMIGLYFFGMSIGRTLGPEYLLKLYMAGAI 213
           NM  L+ F  SI   LG E  L LY++G +
Sbjct: 226 NMYVLWTFSSSIVSLLGREQFLALYLSGGV 255

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of opa1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYL 220
            + +Y+ AG I   V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 9/138 (6%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 129 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPS 187

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 188 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 244

Query: 204 LLKLYM-AGAIGGSVFYL 220
            + +Y+ AG I   V Y+
Sbjct: 245 FMAVYLSAGVISNFVSYV 262

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals (By similarity). Promotes changes in mitochondria morphology regulated by phosphorylation of P-beta domain.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLV 221
            + +Y+ AG I   V Y+ 
Sbjct: 243 FMAVYLSAGVISTFVSYVC 261

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLV 221
            + +Y+ AG I   V Y+ 
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 88  KSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFMLWRIAD 145
           +S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF LWR+  
Sbjct: 127 QSYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPS 185

Query: 146 -PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEY 203
             + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI   LG E 
Sbjct: 186 LHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQ 242

Query: 204 LLKLYM-AGAIGGSVFYLV 221
            + +Y+ AG I   V Y+ 
Sbjct: 243 FVAVYLSAGVISNFVSYVC 261

Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
225456573	333	PREDICTED: rhomboid protein 1, mitochond	0.968	0.840	0.513	2e-79
297734076	362	unnamed protein product [Vitis vinifera]	0.961	0.767	0.510	7e-78
224092178	242	predicted protein [Populus trichocarpa]	0.674	0.805	0.580	1e-60
18394631	336	RHOMBOID-like protein 12 [Arabidopsis th	0.775	0.666	0.505	3e-60
297844814	336	rhomboid family protein [Arabidopsis lyr	0.775	0.666	0.498	5e-60
356513475	336	PREDICTED: uncharacterized protein C13E7	0.788	0.678	0.509	3e-56
449439341	336	PREDICTED: uncharacterized protein C13E7	1.0	0.860	0.452	5e-55
147790859	293	hypothetical protein VITISV_019858 [Viti	0.851	0.839	0.414	2e-52
255547155	195	conserved hypothetical protein [Ricinus	0.505	0.748	0.575	3e-43
297839291	323	hypothetical protein ARALYDRAFT_316359 [	0.716	0.640	0.416	8e-41

>gi|225456573|ref|XP_002265768.1| PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/339 (51%), Positives = 207/339 (61%), Gaps = 59/339 (17%)

Query: 1   MQRLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH------- 49
           MQRL+SLK  +  S  +       F+KP      HPN     LS  S  H  H       
Sbjct: 1   MQRLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPP 53

Query: 50  PTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA- 108
           P F W S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF  
Sbjct: 54  PHFPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGF 113

Query: 109 -----SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSG 163
                S+  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SG
Sbjct: 114 SPSFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSG 173

Query: 164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH 223
           R+HTLITSAFSHID+ H++SNMIGLYFFGM+IGR  GPE+LLKLY+AGA+ GSVFYLV+H
Sbjct: 174 RIHTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHH 233

Query: 224 AFLAMSSKRQGMWVVDPSRTPA-----------------------------------LGV 248
           AF+A SSK Q MW ++PS  P                                    LG+
Sbjct: 234 AFMAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGI 293

Query: 249 FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
           FLIGKDMLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 294 FLIGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734076|emb|CBI15323.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 172/337 (51%), Positives = 205/337 (60%), Gaps = 59/337 (17%)

Query: 3   RLLSLKQLASKSNFLKNPTNFTFSKP---FTCHPNVQKRPLSSFS-KHPFH-------PT 51
           RL+SLK  +  S  +       F+KP      HPN     LS  S  H  H       P 
Sbjct: 32  RLISLKVASDISRRV-------FTKPSSLLHSHPNKTFFSLSQPSPTHHLHTTSLIPPPH 84

Query: 52  FSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA--- 108
           F W S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF    
Sbjct: 85  FPWPSHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSP 144

Query: 109 ---SFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRL 165
              S+  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTISLDNF SGR+
Sbjct: 145 SFDSYGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRI 204

Query: 166 HTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAF 225
           HTLITSAFSHID+ H++SNMIGLYFFGM+IGR  GPE+LLKLY+AGA+ GSVFYLV+HAF
Sbjct: 205 HTLITSAFSHIDIGHLISNMIGLYFFGMNIGRVFGPEFLLKLYLAGAVVGSVFYLVHHAF 264

Query: 226 LAMSSKRQGMWVVDPSRTPA-----------------------------------LGVFL 250
           +A SSK Q MW ++PS  P                                    LG+FL
Sbjct: 265 MAPSSKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFL 324

Query: 251 IGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
           IGKDMLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 325 IGKDMLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092178|ref|XP_002309495.1| predicted protein [Populus trichocarpa] gi|222855471|gb|EEE93018.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/236 (58%), Positives = 157/236 (66%), Gaps = 41/236 (17%)

Query: 92  DGKVLFFRAQFPER------SFASFRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD 145
           D KV FF A+F         S  S R  WRSW  +  +  VV GLIIAN AVFMLWRI D
Sbjct: 4   DCKVGFFIARFARGYSWSNLSLGSNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIED 63

Query: 146 PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLL 205
            KFM  NF ISLDNF SGR+HTL+TSAFSHID+ HI  NMIGLYFFG +I RT GPE+LL
Sbjct: 64  QKFMMENFMISLDNFRSGRIHTLVTSAFSHIDIGHIAFNMIGLYFFGTNIARTFGPEFLL 123

Query: 206 KLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA-------------------- 245
           KLY+AGAIGGSVFYL++H ++ +SSK QGMW  D SRTP                     
Sbjct: 124 KLYLAGAIGGSVFYLLHHGYMDLSSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPR 183

Query: 246 ---------------LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
                          LG+FLIGKD+LR++EGNSNISGSAHLGGAAVAA+AWARI+R
Sbjct: 184 ATLYFDFIIPVPAILLGIFLIGKDLLRVMEGNSNISGSAHLGGAAVAAIAWARIKR 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394631|ref|NP_564058.1| RHOMBOID-like protein 12 [Arabidopsis thaliana] gi|9795596|gb|AAF98414.1|AC026238_6 Hypothetical protein [Arabidopsis thaliana] gi|13877607|gb|AAK43881.1|AF370504_1 Unknown protein [Arabidopsis thaliana] gi|20148713|gb|AAM10247.1| unknown protein [Arabidopsis thaliana] gi|21592397|gb|AAM64348.1| unknown [Arabidopsis thaliana] gi|332191612|gb|AEE29733.1| RHOMBOID-like protein 12 [Arabidopsis thaliana]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/283 (50%), Positives = 180/283 (63%), Gaps = 59/283 (20%)

Query: 48  FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
           F P+  WRS++                R FF S L ++  K  +  + +V F  +QFP++
Sbjct: 64  FDPSQLWRSEK---------------IRGFFASALGNKAVKLGNLVESRVGFIGSQFPKK 108

Query: 106 SF-----ASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
            F     + F+ R W+ WL+     +VV GL+IAN  VF++WR+ + +FM NNF ISLDN
Sbjct: 109 GFEFQRFSGFQRRGWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDN 168

Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
           F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R  GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FKSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228

Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPA--------------------------------- 245
           L++HA++A +S K QG +V DPSRTP                                  
Sbjct: 229 LIHHAYMAATSPKGQGAFVRDPSRTPGLGASGAVNAIMLLDIFLHPRATLYLEFFIPVPA 288

Query: 246 --LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
             LG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844814|ref|XP_002890288.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297336130|gb|EFH66547.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 141/283 (49%), Positives = 177/283 (62%), Gaps = 59/283 (20%)

Query: 48  FHPTFSWRSQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRK--SFFDGKVLFFRAQFPER 105
           F P+  WRS+                 R FF + L ++  K  +  + +V F  +QFP++
Sbjct: 64  FDPSQLWRSET---------------IRGFFATALGNKAVKLGNLVESRVGFIGSQFPKK 108

Query: 106 SFASFRYR------WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDN 159
            F   R+       W+ WL+     +VV GL+IANT VFM+WR+ + +FM  NF ISLDN
Sbjct: 109 GFEFERFSGFQRRGWKHWLQGLSDRDVVLGLVIANTGVFMMWRVFNQQFMMKNFMISLDN 168

Query: 160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFY 219
           F SGRLHTLITSAFSHID+ HIVSNMIGLYFFG SI R  GP++LLKLY+AGA+GGSVFY
Sbjct: 169 FTSGRLHTLITSAFSHIDIGHIVSNMIGLYFFGTSIARNFGPQFLLKLYLAGALGGSVFY 228

Query: 220 LVYHAFLAMSS-KRQGMWVVDPSRTPA--------------------------------- 245
           L++HA++A +S K QG ++ DPSRTP                                  
Sbjct: 229 LIHHAYMATTSPKGQGAFMRDPSRTPGLGASGAVNAIMLLDIFLHPTATLYLEFIIPVPA 288

Query: 246 --LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRR 286
             LG+FLIGKD+LRI EGNSNISGSAHLGGAAVAA+AWARIR+
Sbjct: 289 MLLGIFLIGKDILRITEGNSNISGSAHLGGAAVAAIAWARIRK 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513475|ref|XP_003525439.1| PREDICTED: uncharacterized protein C13E7.11-like [Glycine max]

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 162/269 (60%), Gaps = 41/269 (15%)

Query: 41  SSFSKHPFHPTFSWRSQQSLSLKTHAFLFNPLLARRF-FTSLLSSQLRKSFFDGKV---L 96
           S F  HP H    + S +S S K  AFL  P+++R F F  LL    R      +     
Sbjct: 53  SPFLTHPLH---HFHSCRSFSTKFRAFLSQPMISRHFAFNPLLRVSARSLQIGCRPSLHY 109

Query: 97  FFRAQFPERSFASFRYR-WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTI 155
           F R  F       F  R WRSWLR   ++++V GLIIAN A+F+LWRIAD  FM  NFTI
Sbjct: 110 FIRHNFNFSHNHDFSRRSWRSWLRGLTANDMVLGLIIANVAIFLLWRIADQNFMIKNFTI 169

Query: 156 SLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGG 215
           SLDNF SGRLHTLIT+AFSH+D  HIVSNMIGLYFFGM+IGR  GPE+LLKLY+AGA+GG
Sbjct: 170 SLDNFKSGRLHTLITNAFSHVDTWHIVSNMIGLYFFGMNIGRNFGPEFLLKLYLAGAVGG 229

Query: 216 SVFYLVYHAFLAMSSKRQGMWVVD----------------------PSRT---------P 244
           SVFYL++ A+ A +SK     +V                       P  T         P
Sbjct: 230 SVFYLIHQAYKAQTSKDWRTMIVSKELALGASGAVNAVMLLDIFLFPKATLYLDFFIPVP 289

Query: 245 A--LGVFLIGKDMLRIIEGNSNISGSAHL 271
           A  LG+FLIGKDMLRI+EGNS ISGSAHL
Sbjct: 290 AVLLGIFLIGKDMLRILEGNSQISGSAHL 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439341|ref|XP_004137444.1| PREDICTED: uncharacterized protein C13E7.11-like [Cucumis sativus]

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 152/336 (45%), Positives = 190/336 (56%), Gaps = 47/336 (13%)

Query: 1   MQRLLSLKQLASKSNFLKNPTNFTFSKPFT--CHPNVQKRPLSSFSKHPFHPTFSWRSQQ 58
           M +L S K ++  SN   N  +      F+     + Q     SF   P        S  
Sbjct: 1   MNKLFSRKLVSRLSNSYANSLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSWSSH 60

Query: 59  S-LSLKTHAFLFNPLLARRFFTSLLSSQLR---KSFFDGKVLFFRAQFPERSFA---SFR 111
              + K H F   P++ +RF  +  ++  +   KS  + + LF    F +  F     F 
Sbjct: 61  RSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120

Query: 112 YRW---RSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTL 168
           ++W   RSW ++   +EVV GLIIAN AVF+LWRIADP FM+ NFTISL+N  SGR+HTL
Sbjct: 121 HQWGGRRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMSKNFTISLENVRSGRIHTL 180

Query: 169 ITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAM 228
           ITSAFSHID  HIVSNM+GLYFFGM+IG   G E+LLKLY+AGAIGGS FYL +H F A+
Sbjct: 181 ITSAFSHIDTGHIVSNMVGLYFFGMNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQAL 240

Query: 229 SSKRQGMWVVDPSR---------------------------------TPA--LGVFLIGK 253
           SSK +  W  DP R                                  PA  LG+FLIGK
Sbjct: 241 SSKSRSFWGEDPVRAKGLGASGAVNAIMLLDIFLFPKATLYLQFFIPVPAILLGIFLIGK 300

Query: 254 DMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRGF 289
           DMLR++E +S ISGSAHLGGAAVAALAWAR+RR  F
Sbjct: 301 DMLRMLENDSQISGSAHLGGAAVAALAWARVRRGRF 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790859|emb|CAN61730.1| hypothetical protein VITISV_019858 [Vitis vinifera]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 138/333 (41%), Positives = 170/333 (51%), Gaps = 87/333 (26%)

Query: 1   MQRLLSLKQLASKSN-FLKNPTNFTFSKPFTCHPNV-QKRP---LSSFSKHPFHPTFSWR 55
           MQRL+SLK  +  S      P++   S P+    ++ Q  P   L + S  P  P F W 
Sbjct: 1   MQRLISLKVASDISRRVFTKPSSLLHSHPYKTFFSLSQPSPTHHLHTTSLIP-PPHFPWP 59

Query: 56  SQQSLSLKTHAFLFNPLLARRFFTSLLSSQLRKSFFDGKVLFFRAQFPERSFA------S 109
           S   LS   + F+ NP L ++F  + L     K+    +V F RAQFP RSF       S
Sbjct: 60  SHHGLSRSVYGFISNPTLLKQFLPTALLKGSSKTLAASRVGFLRAQFPRRSFGFSPSFDS 119

Query: 110 FRYRWRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLI 169
           +  RWRSWL    +++VV GLIIAN AVFMLWRI+D +FM NNFTI              
Sbjct: 120 YGRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTI-------------- 165

Query: 170 TSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMS 229
                                     GR  GPE+LLKLY+AGA+ GSVFYLV+HAF+A S
Sbjct: 166 --------------------------GRVFGPEFLLKLYLAGAVVGSVFYLVHHAFMAPS 199

Query: 230 SKRQGMWVVDPSRTPALG-----------------------------------VFLIGKD 254
           SK Q MW ++PS  P LG                                   +FLIGKD
Sbjct: 200 SKGQQMWSINPSAIPGLGASGAVNAIMLLDIFLFPRSTLYLEFFIPVPAILLGIFLIGKD 259

Query: 255 MLRIIEGNSNISGSAHLGGAAVAALAWARIRRR 287
           MLRIIEG+  ISGSAHLGGAAVAA+AW R+RRR
Sbjct: 260 MLRIIEGDDQISGSAHLGGAAVAAIAWTRLRRR 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547155|ref|XP_002514635.1| conserved hypothetical protein [Ricinus communis] gi|223546239|gb|EEF47741.1| conserved hypothetical protein [Ricinus communis]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/186 (57%), Positives = 126/186 (67%), Gaps = 40/186 (21%)

Query: 143 IADPKFMANNFT----ISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRT 198
           + DP       T    ISLDNF SGR+HTLITSAFSHI++EHI+SNMIGLYFFG  I R+
Sbjct: 11  VVDPSLYEQGGTLFGLISLDNFKSGRVHTLITSAFSHINLEHIISNMIGLYFFGTKIARS 70

Query: 199 LGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPA------------- 245
            G EYLLKLY+AGAIGGS+FYLV+HAF+A+S+K   MW +DPSRTP              
Sbjct: 71  FGHEYLLKLYVAGAIGGSLFYLVHHAFMALSTKEHRMW-MDPSRTPGLGASGAVNAVMLL 129

Query: 246 ----------------------LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWAR 283
                                 LG+FLIGKD+LRIIEGNSNISGSAHLGGAAVAA+A+AR
Sbjct: 130 DIFLDPRATLYLNYIIPVPAILLGIFLIGKDVLRIIEGNSNISGSAHLGGAAVAAIAFAR 189

Query: 284 IRRRGF 289
           I++  F
Sbjct: 190 IKKGRF 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839291|ref|XP_002887527.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp. lyrata] gi|297333368|gb|EFH63786.1| hypothetical protein ARALYDRAFT_316359 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 152/259 (58%), Gaps = 52/259 (20%)

Query: 77  FFTSLLSSQLRKSF---FDGKVLFFRAQFPE------RSFASFRYR-WRSWLRQYGSSEV 126
           F T+L ++ L+  F    + +V FF +Q P       + F  F+ R W+SW+   G++ V
Sbjct: 65  FATTLGNTNLKLKFRNVLESRVGFFSSQLPSNGLIESKGFTGFQKRGWKSWIN--GANGV 122

Query: 127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
           V+GLIIAN AVF +WR+++  +M  +F ++  +F SGR+HTLITS FS++    I+ NMI
Sbjct: 123 VFGLIIANVAVFTMWRVSNRWWMLKHFVLTTKSFTSGRIHTLITSGFSNVGTNQIILNMI 182

Query: 187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP-- 244
           GLY+FG  I RTLGP YLLKLY AGA+G SVF+L  HA LA + K QG+  +D S+ P  
Sbjct: 183 GLYYFGTRIARTLGPLYLLKLYFAGALGSSVFFLSNHALLA-TLKGQGVVTIDKSKLPYS 241

Query: 245 -----------AL-----------------------GVFLIGKDMLRIIEG-NSNISGSA 269
                      AL                       G+  +G +ML+I+EG N+NIS S+
Sbjct: 242 QLGADGSVFAIALLDMFLYPKVTTYFVLMLRVPVMGGILFLGLEMLKILEGKNNNISRSS 301

Query: 270 H--LGGAAVAALAWARIRR 286
              +GG  VAA+AWARIR+
Sbjct: 302 VRLMGGVVVAAMAWARIRK 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2027448	336	RBL12 "RHOMBOID-like protein 1	0.598	0.514	0.571	4.8e-58
TAIR|locus:2037333	322	AT1G74130 [Arabidopsis thalian	0.574	0.515	0.438	8.2e-37
TAIR|locus:2037328	320	AT1G74140 [Arabidopsis thalian	0.584	0.528	0.441	4.1e-33
SGD|S000003333	346	PCP1 "Mitochondrial serine pro	0.328	0.274	0.367	1.1e-08
UNIPROTKB|F1SG92	281	PARL "Uncharacterized protein"	0.463	0.476	0.326	4.3e-08
UNIPROTKB|Q9H300	379	PARL "Presenilins-associated r	0.463	0.353	0.326	5.4e-08
UNIPROTKB|E2RQQ1	379	PARL "Uncharacterized protein"	0.463	0.353	0.326	7e-08
UNIPROTKB|Q2KHV4	377	PARL "Presenilins-associated r	0.463	0.355	0.326	1.2e-07
MGI|MGI:1277152	377	Parl "presenilin associated, r	0.463	0.355	0.319	2.7e-07
RGD|1306191	377	Parl "presenilin associated, r	0.463	0.355	0.319	3.5e-07

TAIR|locus:2027448 RBL12 "RHOMBOID-like protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 104/182 (57%), Positives = 134/182 (73%)

Query:    75 RRFFTSLLSSQLRK--SFFDGKVLFFRAQFPERSF-----ASFRYR-WRSWLRQYGSSEV 126
             R FF S L ++  K  +  + +V F  +QFP++ F     + F+ R W+ WL+     +V
Sbjct:    76 RGFFASALGNKAVKLGNLVESRVGFIGSQFPKKGFEFQRFSGFQRRGWKHWLQGLSDRDV 135

Query:   127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
             V GL+IAN  VF++WR+ + +FM NNF ISLDNF SGRLHTLITSAFSHID+ HIVSNMI
Sbjct:   136 VLGLVIANAGVFVMWRVFNQQFMMNNFMISLDNFKSGRLHTLITSAFSHIDIGHIVSNMI 195

Query:   187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSS-KRQGMWVVDPSRTPA 245
             GLYFFG SI R  GP++LLKLY+AGA+GGSVFYL++HA++A +S K QG +V DPSRTP 
Sbjct:   196 GLYFFGTSIARNFGPQFLLKLYLAGALGGSVFYLIHHAYMAATSPKGQGAFVRDPSRTPG 255

Query:   246 LG 247
             LG
Sbjct:   256 LG 257

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2037333 AT1G74130 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 79/180 (43%), Positives = 111/180 (61%)

Query:    77 FFTSLL-SSQLRKSF---FDGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEV 126
             FF   L ++ L+  F    + +  FF ++ P   F S     F+ R W+SW+   G++ V
Sbjct:    60 FFAGKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGV 117

Query:   127 VYGLIIANTAVFMLWRIA--DPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
             V+GL+IAN AVF +WR+   D  +M  NF +S  +F++GR+HTLITS FSH+   HI+ N
Sbjct:   118 VFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTLITSGFSHVGATHIILN 177

Query:   185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTP 244
             M+GL +FG  I R+ GP YLLKLY AGA+GGSVF+L  HA   +S K Q +   D  + P
Sbjct:   178 MMGLCYFGARIARSFGPRYLLKLYFAGALGGSVFFLSSHALSVISLKGQRVVPKDQLKVP 237

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2037328 AT1G74140 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 83/188 (44%), Positives = 116/188 (61%)

Query:    77 FFTSLL-SSQLRKSF---FDGKVLFFRAQFPERSFAS-----FRYR-WRSWLRQYGSSEV 126
             FF S L ++ L+  F    + +  FF ++ P   F S     F+ R W+SW+   G++ V
Sbjct:    66 FFASKLGNTNLKLKFGNVMESRAGFFSSELPSHGFESGGFTGFQKRGWKSWIN--GANGV 123

Query:   127 VYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMI 186
             V+GL+IAN AVF +WR++D  +M + ++     F SG +HTLITS FSHI    I+ NMI
Sbjct:   124 VFGLVIANAAVFTMWRVSDRSWMLSTYS-----FTSGYIHTLITSGFSHIGTSQIILNMI 178

Query:   187 GLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVVDPSRTPAL 246
             G+ +FG  I RTLGP YLLKLY AGA+GGSV +L YHA LA + K +G+ + D   T  +
Sbjct:   179 GISYFGSRIARTLGPLYLLKLYFAGALGGSVCFLSYHALLA-TLKGEGVVIKDHQSTAPI 237

Query:   247 GVFLIGKD 254
                L+G D
Sbjct:   238 SQ-LLGAD 244

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

SGD|S000003333 PCP1 "Mitochondrial serine protease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 36/98 (36%), Positives = 56/98 (57%)

Query:   126 VVYGLIIANTAVFMLWRIADP-KFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSN 184
             +VY L+  N AVF LW++    +F+     +  D +++ ++ ++I SAFSH +  H+  N
Sbjct:   145 LVYALLGINVAVFGLWQLPKCWRFLQKYMLLQKD-YVTSKI-SIIGSAFSHQEFWHLGMN 202

Query:   185 MIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
             M+ L+ FG S+   LG      LYM  AI GS+F L Y
Sbjct:   203 MLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWY 240

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0006465 "signal peptide processing" evidence=IMP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|F1SG92 PARL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 47/144 (32%), Positives = 69/144 (47%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   124 LKSRVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFC 181

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L   ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   182 LWRVPSLQRTMIRYFT---SNPASKVLCAPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 238

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   239 ILGQEQFMAVYLSAGVISNFVSYV 262

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q9H300 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 47/144 (32%), Positives = 70/144 (48%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   124 LKSRVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVLVFC 181

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   182 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 238

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   239 ILGQEQFMAVYLSAGVISNFVSYV 262

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2RQQ1 PARL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 47/144 (32%), Positives = 70/144 (48%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   124 LKSRVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFC 181

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   182 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 238

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   239 ILGQEQFMAVYLSAGVISNFVSYV 262

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q2KHV4 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 47/144 (32%), Positives = 70/144 (48%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++    FR     W       +  V G+I AN  VF 
Sbjct:   122 LKSKVQ-SYFDGIKADWLDSIRPQKE-GDFRKEINKWWNNLSDGQRTVTGIIAANVFVFC 179

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   180 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 236

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   237 ILGQEQFMAVYLSAGVISTFVSYV 260

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:1277152 Parl "presenilin associated, rhomboid-like" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 46/144 (31%), Positives = 70/144 (48%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF 
Sbjct:   122 LKSRVQ-SYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFC 179

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   180 LWRVPSLQRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVN 236

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   237 ILGQEQFVAVYLSAGVISNFVSYV 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=IMP

RGD|1306191 Parl "presenilin associated, rhomboid-like" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 46/144 (31%), Positives = 70/144 (48%)

Query:    82 LSSQLRKSFFDG-KVLFFRAQFPERSFASFRYRWRSWLRQYGSSE-VVYGLIIANTAVFM 139
             L S+++ S+FDG K  +  +  P++   + R     W       +  V G+I AN  VF 
Sbjct:   122 LKSRVQ-SYFDGIKADWLDSIRPQKE-GNLRKEINKWWNSLSDGQRTVTGIIAANALVFC 179

Query:   140 LWRIAD-PKFMANNFTISLDNFLSGRLHT-LITSAFSHIDVEHIVSNMIGLYFFGMSIGR 197
             LWR+    + M   FT    N  S  L + ++ S FSH  + H+ +NM  L+ F  SI  
Sbjct:   180 LWRVPSLHRTMIRYFT---SNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVN 236

Query:   198 TLGPEYLLKLYM-AGAIGGSVFYL 220
              LG E  + +Y+ AG I   V Y+
Sbjct:   237 ILGQEQFVAVYLSAGVISNFVSYV 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:2001243 "negative regulation of intrinsic apoptotic signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000029001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (333 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038189001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (346 aa)			•				•		0.560
	GSVIVG00000363001	SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (289 aa)			•				•		0.470
	GSVIVG00001124001	SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (328 aa)			•				•		0.463
	GSVIVG00021327001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (388 aa)			•				•		0.461
	GSVIVG00001974001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_124, whole genome shot [...] (271 aa)							•		0.457
	GSVIVG00024303001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (391 aa)			•				•		0.441
	GSVIVG00023249001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (294 aa)							•		0.439
	GSVIVG00027108001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (408 aa)							•		0.436
	GSVIVG00007376001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (325 aa)			•				•		0.431
	GSVIVG00019747001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (328 aa)							•		0.428

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-14
COG0705	228	COG0705, COG0705, Membrane associated serine prote	1e-09

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 23/144 (15%)

Query: 163 GRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY 222
           G+L  LITS F H    H++ NM+ L FFG+ + R LG    L LY+   + GS+   ++
Sbjct: 5   GQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLLSYLF 64

Query: 223 H------------------AFLAMSSK-RQGMWVVDPSRTPALGVFLIGKDMLRIIEGNS 263
                              A L +  + R  ++    +    LG+ L+   +  +     
Sbjct: 65  SPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP---- 120

Query: 264 NISGSAHLGGAAVAALAWARIRRR 287
            IS  AHLGG     L    + RR
Sbjct: 121 GISNFAHLGGLIAGLLLGFLLLRR 144

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 34/197 (17%)

Query: 126 VVYGLIIANTAVFML--------WRIADPKFMANNFTISLDNFLSGR--LHTLITSAFSH 175
           V   LI+ N  VF+L          +    F               R  L  LIT+ F H
Sbjct: 19  VTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLH 78

Query: 176 IDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH------------ 223
               H++ NM+ L+ FG ++ R LG    L  Y+   +   +  +++             
Sbjct: 79  AGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASG 138

Query: 224 --------AFLAMSSKRQGMWVVD---PSRTPALGVFLIGKDMLRIIEGNSNISGSAHLG 272
                    FL     R  +  +    P+    L   L             +++ SAHLG
Sbjct: 139 AIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSG-AGSFGPSVAWSAHLG 197

Query: 273 GAAVAALAWARIRRRGF 289
           G     L  A + R+  
Sbjct: 198 GLIGGLLLAALLSRKLR 214

Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.91
COG0705	228	Membrane associated serine protease [Amino acid tr	99.85
KOG2980	310	consensus Integral membrane protease of the rhombo	99.78
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.74
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.66
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.53
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.06
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.27
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.01
KOG0858	239	consensus Predicted membrane protein [Function unk	97.73
KOG2890	326	consensus Predicted membrane protein [Function unk	95.94
COG5291	313	Predicted membrane protein [Function unknown]	92.69
KOG4463	323	consensus Uncharacterized conserved protein [Funct	91.86

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=8.2e-25  Score=202.33  Aligned_cols=172  Identities=15%  Similarity=0.181  Sum_probs=130.7

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--------hhHHHhcccccccccccCCcceeeecccccCChHHHHHHH
Q 023003          114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIAD--------PKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM  185 (289)
Q Consensus       114 ~~~~~~~l~~~~vt~~iI~inv~Vfll~~~~~--------~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm  185 (289)
                      .+.-+++...++++..|+++|+++|++....+        .+.+.+.++..+..+.++|+||++|++|+|.++.|+++||
T Consensus        43 ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm  122 (278)
T PTZ00101         43 LNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNV  122 (278)
T ss_pred             HHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHH
Confidence            34556778889999999999999999876532        1244555677888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--ec-------------ccchhHH--HH
Q 023003          186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--VD-------------PSRTPAL--GV  248 (289)
Q Consensus       186 ~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l~-------------p~~~p~l--~~  248 (289)
                      +.++.+|..+|+.+|++|++.+|+++|++|++++....+. ..++||||+++  ++             +.+...+  .+
T Consensus       123 ~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~-~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i  201 (278)
T PTZ00101        123 FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYC-PIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNII  201 (278)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccC-CcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            9999999999999999999999999999999998776543 45799999875  11             1111111  11


Q ss_pred             HHHHHHHH-HhccCCCchhHHHHHHHHHHHHHHHHHHhc
Q 023003          249 FLIGKDML-RIIEGNSNISGSAHLGGAAVAALAWARIRR  286 (289)
Q Consensus       249 ~~l~~~l~-~~~~~~~~vs~~AHLgGal~G~l~~~~lrk  286 (289)
                      +++.+.+. ......+++|+.||+||+++|++....+++
T Consensus       202 ~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~  240 (278)
T PTZ00101        202 FFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS  240 (278)
T ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            22222221 112235789999999999999997665543

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.91  E-value=2.7e-24  Score=198.90  Aligned_cols=157  Identities=20%  Similarity=0.301  Sum_probs=119.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~  202 (289)
                      .+++|..++++|++||++..+........++.........+|+||++|++|+|.|+.|+++||+++|.+|..+|+.+|++
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~  172 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG  172 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            45799999999999999988765444444443333344579999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--e---------cccc---hhH----HHHHHHHHHHHHhccCCCc
Q 023003          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--V---------DPSR---TPA----LGVFLIGKDMLRIIEGNSN  264 (289)
Q Consensus       203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l---------~p~~---~p~----l~~~~l~~~l~~~~~~~~~  264 (289)
                      +++.+|+++++.|++++++...  ....|+||+++  +         .|..   .|.    +.++++....... . .++
T Consensus       173 ~~l~l~l~s~i~~~~~~~~~~~--~~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~llwl~~g~~~~-~-g~~  248 (276)
T PRK10907        173 KLIVITLISALLSGWVQSKFSG--PWFGGLSGVVYALMGYVWLRGERDPQSGIYLPRGLIAFALLWLVAGYFDL-F-GMS  248 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc--chhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHc-c-Ccc
Confidence            9999999999999999877654  34579999886  1         1211   121    1222222222222 2 368


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 023003          265 ISGSAHLGGAAVAALAWAR  283 (289)
Q Consensus       265 vs~~AHLgGal~G~l~~~~  283 (289)
                      |++.||++|+++|++.+..
T Consensus       249 Ian~AHlgGli~Gll~g~~  267 (276)
T PRK10907        249 IANAAHVAGLAVGLAMAFW  267 (276)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997653

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.85  E-value=3.4e-21  Score=172.86  Aligned_cols=164  Identities=26%  Similarity=0.299  Sum_probs=121.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHH------hcccccccccc--cC--CcceeeecccccCChHHHHHHHHHHHHHH
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMA------NNFTISLDNFL--SG--RLHTLITSAFSHIDVEHIVSNMIGLYFFG  192 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~------~~f~l~p~~i~--~g--~~wrllTs~F~H~~~~HLl~Nm~~L~~~G  192 (289)
                      .+.++..++++|+++|+...........      +.+...|....  .+  |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            4568899999999999988776532111      12334443331  12  89999999999999999999999999999


Q ss_pred             HHHhhhcChhHHHHHHHHHHHHHHHHHHHHhccc-ceeeeeeeEee--------eccc------c--hh----HHHHHHH
Q 023003          193 MSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFL-AMSSKRQGMWV--------VDPS------R--TP----ALGVFLI  251 (289)
Q Consensus       193 ~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~~~~-~~~~GaSGai~--------l~p~------~--~p----~l~~~~l  251 (289)
                      ..+|+.+|+.+|+.+|+.+++.+++.+..+.+.. .+++||||+++        ..+.      .  .+    .+..+++
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  175 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL  175 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence            9999999999999999999999999988877654 46799999885        1111      0  22    1233444


Q ss_pred             HHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHhc
Q 023003          252 GKDMLRIIEG-NSNISGSAHLGGAAVAALAWARIRR  286 (289)
Q Consensus       252 ~~~l~~~~~~-~~~vs~~AHLgGal~G~l~~~~lrk  286 (289)
                      ..+++....+ .++|++.||++|+++|.+++....+
T Consensus       176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~  211 (228)
T COG0705         176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR  211 (228)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444433222 2379999999999999998765544

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=99.78  E-value=3e-19  Score=164.37  Aligned_cols=224  Identities=22%  Similarity=0.312  Sum_probs=164.0

Q ss_pred             ccccccccccccchhhhhhhhhhh-hhhcccccchhhhhhcCCCC------CCccchhhHHHHHhhcCChHHHHHHHHHH
Q 023003           62 LKTHAFLFNPLLARRFFTSLLSSQ-LRKSFFDGKVLFFRAQFPER------SFASFRYRWRSWLRQYGSSEVVYGLIIAN  134 (289)
Q Consensus        62 ~~~~~~~~~~~~s~~~f~~~~~~~-~~~~~~~~~~~~~~~~~P~~------~~~~~~r~~~~~~~~l~~~~vt~~iI~in  134 (289)
                      ..++...+.+...-..+.+.++++ .+.+.++.+..|+-+..|.+      ..+++++.++.|.+..+.  ++++++++|
T Consensus        48 p~~~~r~~~~~g~fa~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~f~~F~~~~~k~w~~~~~g--~v~~ll~~n  125 (310)
T KOG2980|consen   48 PSVVSRSAKTHGFFASALGNTNLKLKFGNLVESRVGFFGSLLPSHGFEFGGFTGFQKRGWKHWISGANG--VVFGLLIAN  125 (310)
T ss_pred             cccccccccCcceeeccchhhHHHHHhccccceeeEeecccCchhccccCCcccceecchHHHhhcCCc--chhHHHHHH
Confidence            345555555555556666777776 45577888888888876633      235667777777777554  999999999


Q ss_pred             HHHHHHHHhcChhH-HHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHH-HHhhhcChhHHHHHHHHHH
Q 023003          135 TAVFMLWRIADPKF-MANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGM-SIGRTLGPEYLLKLYMAGA  212 (289)
Q Consensus       135 v~Vfll~~~~~~~~-~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~-~le~~~G~~~fl~lyl~~g  212 (289)
                      +++|.+|++...+. +..++...+..  ..-+|.+++|.|.|.+.+|+-.||+.++.+.. .+....|...+.++|+.++
T Consensus       126 ~~vf~lWrv~~~~~~~~~~mls~~~~--~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~  203 (310)
T KOG2980|consen  126 AFVFTLWRVPQKQFTMIPWMLSRNAY--KTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAG  203 (310)
T ss_pred             HHHHHHHHhcchhhhhhhHHhhcccc--cccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccc
Confidence            99999999986543 44444444332  45678899999999999999999999999998 8888999999999999666


Q ss_pred             HHHHHHHHHHh---cccceeeeeeeEee--------ecc-----------cch--hHHHHHHHHHHHHHhccCCCchhHH
Q 023003          213 IGGSVFYLVYH---AFLAMSSKRQGMWV--------VDP-----------SRT--PALGVFLIGKDMLRIIEGNSNISGS  268 (289)
Q Consensus       213 i~g~l~~~l~~---~~~~~~~GaSGai~--------l~p-----------~~~--p~l~~~~l~~~l~~~~~~~~~vs~~  268 (289)
                      ..|........   ...++++||||+++        +.|           .+.  -.....++.+++.++..++.+.|+.
T Consensus       204 ~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~  283 (310)
T KOG2980|consen  204 VKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHA  283 (310)
T ss_pred             cccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhH
Confidence            66655443332   12456799999886        122           111  1122355677787788888899999


Q ss_pred             HHHHHHHHHHHH----HHHHhcCCC
Q 023003          269 AHLGGAAVAALA----WARIRRRGF  289 (289)
Q Consensus       269 AHLgGal~G~l~----~~~lrkgr~  289 (289)
                      ||++|.+.|.++    +..+||||+
T Consensus       284 Ah~~gsl~Gv~va~~~~~ri~kgR~  308 (310)
T KOG2980|consen  284 AHLSGSLFGVVVATYLWARIRKGRF  308 (310)
T ss_pred             hhhcchHHHHHHHHHHHHHHHcCcc
Confidence            999999999985    457899985

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.74  E-value=3.7e-19  Score=147.67  Aligned_cols=126  Identities=29%  Similarity=0.373  Sum_probs=90.6

Q ss_pred             ccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEeee--
Q 023003          161 LSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV--  238 (289)
Q Consensus       161 ~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~l--  238 (289)
                      +++|+||++|++|+|.|+.|++.|++.++.+|..+|+.+|++++..+|+.+++++++...+........+|+||+++-  
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            578999999999999999999999999999999999999999999999999999999998887764356899987751  


Q ss_pred             ------cc---cchhH------HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhcCC
Q 023003          239 ------DP---SRTPA------LGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWARIRRRG  288 (289)
Q Consensus       239 ------~p---~~~p~------l~~~~l~~~l~~~~~~~~~vs~~AHLgGal~G~l~~~~lrkgr  288 (289)
                            .+   .+...      ....++...+....  .+++++.+|++|+++|++++..++|.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF--IPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS--SSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                  01   11110      00011112221111  688999999999999999999887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.66  E-value=1e-17  Score=156.92  Aligned_cols=120  Identities=22%  Similarity=0.338  Sum_probs=92.6

Q ss_pred             cccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--
Q 023003          160 FLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--  237 (289)
Q Consensus       160 i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--  237 (289)
                      +..+|+||++||+|+|.|+.||++||+.+.++|..+|+..|.+|+..+|++|++.|++++.+..+. ..++||||+++  
T Consensus       114 ~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~-~~sVGASggvfaL  192 (316)
T KOG2289|consen  114 VHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPN-SISVGASGGVFAL  192 (316)
T ss_pred             hhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccC-CceecccHHHHHH
Confidence            367899999999999999999999999999999999999999999999999999999999998775 45799999986  


Q ss_pred             ec-------------ccchhHHH--HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q 023003          238 VD-------------PSRTPALG--VFLIGKDMLRIIEGNSNISGSAHLGGAAVAALAWA  282 (289)
Q Consensus       238 l~-------------p~~~p~l~--~~~l~~~l~~~~~~~~~vs~~AHLgGal~G~l~~~  282 (289)
                      ++             ..+...+.  ++++.+.+-  +...+.+++.||+||.+.|..+..
T Consensus       193 lgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~--~G~~~~~~~~~h~gg~~~G~~~~f  250 (316)
T KOG2289|consen  193 LGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLD--LGFAPYVDNFAHIGGLLAGFLLGF  250 (316)
T ss_pred             HHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHh--hccccceeccccccccCCCcchhH
Confidence            11             11222111  122222221  122466778888888888877654

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.53  E-value=2.6e-14  Score=129.75  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=113.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcC
Q 023003          121 YGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLG  200 (289)
Q Consensus       121 l~~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G  200 (289)
                      .+.+.+|..+..++.++|++-....-   .+.+.+.++.+.+.|.||++||.++|.+..|+++||+++|.+|..+|+.+|
T Consensus        12 ~~~p~~ts~~~~~~~~i~lv~~~~~i---~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G   88 (258)
T KOG2632|consen   12 MKIPLLTSIVVVLAILIYLVSFFPGI---VEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHG   88 (258)
T ss_pred             ccchHHHHHHHHHHHHHHHHhccchh---hhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhcc
Confidence            44667888888888888877655432   244556667778899999999999999999999999999999999999999


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhc----c----cceeeeeeeEeee--------cccc---------hhHHHHHHHHHH
Q 023003          201 -PEYLLKLYMAGAIGGSVFYLVYHA----F----LAMSSKRQGMWVV--------DPSR---------TPALGVFLIGKD  254 (289)
Q Consensus       201 -~~~fl~lyl~~gi~g~l~~~l~~~----~----~~~~~GaSGai~l--------~p~~---------~p~l~~~~l~~~  254 (289)
                       +.+++.+..+-++..++++++...    .    .+...|.||+.+.        .|.+         +|....-++.+.
T Consensus        89 ~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi  168 (258)
T KOG2632|consen   89 TTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLI  168 (258)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHH
Confidence             889998888999999998887653    1    1223566665541        1111         232111111111


Q ss_pred             HHHhccCCCchhHHHHHHHHHHHHHHHH
Q 023003          255 MLRIIEGNSNISGSAHLGGAAVAALAWA  282 (289)
Q Consensus       255 l~~~~~~~~~vs~~AHLgGal~G~l~~~  282 (289)
                      ...++  .|+.|+.+|++|+++|+.|.+
T Consensus       169 ~~~~l--vp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  169 ATQIL--VPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             HHHHH--ccCchHHHHHHHHHHHHHHHH
Confidence            11111  588999999999999999876

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.06  E-value=6.9e-11  Score=114.16  Aligned_cols=118  Identities=18%  Similarity=0.140  Sum_probs=88.7

Q ss_pred             cCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee----
Q 023003          162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV----  237 (289)
Q Consensus       162 ~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~----  237 (289)
                      +.|.+|++||.|+|.+..|++..|...+.+-.-+|+..|..+..++|+++|+.|++++.++-++. +.+|-+|+=+    
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~-~eVgPa~sQ~Gila  526 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYR-AEVGPAGSQFGILA  526 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccc-cccCCcccccchHH
Confidence            57899999999999999999999999999999999999999999999999999999998887763 3466665432    


Q ss_pred             ---e--c-cc---chhHHHH--HHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q 023003          238 ---V--D-PS---RTPALGV--FLIGKDMLRIIEGNSNISGSAHLGGAAVAALAW  281 (289)
Q Consensus       238 ---l--~-p~---~~p~l~~--~~l~~~l~~~~~~~~~vs~~AHLgGal~G~l~~  281 (289)
                         +  . ..   .-|+-+.  ++....++.+ .-.|.||++|||+|.+.|++..
T Consensus       527 ~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s  580 (652)
T KOG2290|consen  527 CLFVELFQSWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTS  580 (652)
T ss_pred             HHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHH
Confidence               1  1 11   1133111  1111111111 2258999999999999999853

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.27  E-value=8.2e-06  Score=72.19  Aligned_cols=152  Identities=17%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcChhHHHhccccccccc-ccCCcceeeecccccCCh-HHHHHHHHHHHHHHHHHhhh-c-
Q 023003          124 SEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHIDV-EHIVSNMIGLYFFGMSIGRT-L-  199 (289)
Q Consensus       124 ~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i-~~g~~wrllTs~F~H~~~-~HLl~Nm~~L~~~G~~le~~-~-  199 (289)
                      |++|...++..+++.++....--+.  .++.++++.+ .+.|+||++|+.|.-++. .+.++|++.++..++.+|+. . 
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~--~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~   79 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISP--YYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ   79 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCH--HHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC
Confidence            5688888888888877766532111  2344667665 578999999999986554 69999999999999999998 2 


Q ss_pred             Ch-hHHHHHHHHHHHHHHHHHHHHhcc-cc-eeeeee------------------eEeeecccchhHHHHHHHHHHHHHh
Q 023003          200 GP-EYLLKLYMAGAIGGSVFYLVYHAF-LA-MSSKRQ------------------GMWVVDPSRTPALGVFLIGKDMLRI  258 (289)
Q Consensus       200 G~-~~fl~lyl~~gi~g~l~~~l~~~~-~~-~~~GaS------------------Gai~l~p~~~p~l~~~~l~~~l~~~  258 (289)
                      ++ .+++...+.+++.-.+...+.... .. ..+|.+                  ....+.+.+.+.+-.+.++.+++. 
T Consensus        80 ~~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~-  158 (197)
T PF04511_consen   80 GRSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLF-  158 (197)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHh-
Confidence            33 467766665555554444432211 00 001110                  001112345555556666666652 


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHH
Q 023003          259 IEGNSNISGSAHLGGAAVAALAWA  282 (289)
Q Consensus       259 ~~~~~~vs~~AHLgGal~G~l~~~  282 (289)
                        +.  -+...++-|+++|.+|..
T Consensus       159 --~~--~~~~~~l~Gi~~Ghly~f  178 (197)
T PF04511_consen  159 --GG--SSPIPDLLGILVGHLYYF  178 (197)
T ss_pred             --CC--CcHHHHHHHHHHHHHHHH
Confidence              12  245699999999999764

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.01  E-value=5.4e-06  Score=65.79  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=55.0

Q ss_pred             CcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHh
Q 023003          164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH  223 (289)
Q Consensus       164 ~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~~  223 (289)
                      ++|+++|+.|++.++..++.|.+.++..|+.+|+.+|++.++.++++..+.+++...+..
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~   66 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLY   66 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHH
Confidence            789999999999999999999999999999999999999999999988888887765543

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.73  E-value=8.5e-05  Score=67.26  Aligned_cols=103  Identities=16%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcChhHHHhccccccccc-ccCCcceeeecccccCC-hHHHHHHHHHHHHH
Q 023003          114 WRSWLRQYGSSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNF-LSGRLHTLITSAFSHID-VEHIVSNMIGLYFF  191 (289)
Q Consensus       114 ~~~~~~~l~~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i-~~g~~wrllTs~F~H~~-~~HLl~Nm~~L~~~  191 (289)
                      ...|+.+  .|++|.....+|+++=++.++.--+-  .++.++|+.+ .+.|+||++|+.+.-+. -+|.++||+.++--
T Consensus         5 l~~~~~~--iPpVTR~~~~~~v~tt~~~~l~lIsP--~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY   80 (239)
T KOG0858|consen    5 LLNFYLQ--IPPVTRYYTTACVVTTLLVRLDLISP--FQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRY   80 (239)
T ss_pred             HHHHHhc--CChHHHHHHHHHHHHHHHHhhcccCc--hheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHH
Confidence            3456777  45688888888888777766531110  1345677655 67899999999999876 79999999999999


Q ss_pred             HHHHhhhc-C--hhHHHHHHHHHHHHHHHHHH
Q 023003          192 GMSIGRTL-G--PEYLLKLYMAGAIGGSVFYL  220 (289)
Q Consensus       192 G~~le~~~-G--~~~fl~lyl~~gi~g~l~~~  220 (289)
                      ++.+|+-. .  +.+|+...+.+++.-.+..+
T Consensus        81 ~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   81 SSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999943 2  36788777777766655443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=95.94  E-value=0.014  Score=54.84  Aligned_cols=53  Identities=25%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             CcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHH
Q 023003          164 RLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGS  216 (289)
Q Consensus       164 ~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~  216 (289)
                      .+|+++|+.|+-.+++-.+.|.+.|.+-|..+|..+|...++.+|.+.-.+.+
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~  118 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTT  118 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhH
Confidence            68999999999999999999999999999999999999999988875433333

>COG5291 Predicted membrane protein [Function unknown]

Probab=92.69  E-value=0.45  Score=43.76  Aligned_cols=47  Identities=13%  Similarity=0.046  Sum_probs=37.8

Q ss_pred             cccccccCCcceeeecccccCC-hHHHHHHHHHHHHHHHHHhh-hcChh
Q 023003          156 SLDNFLSGRLHTLITSAFSHID-VEHIVSNMIGLYFFGMSIGR-TLGPE  202 (289)
Q Consensus       156 ~p~~i~~g~~wrllTs~F~H~~-~~HLl~Nm~~L~~~G~~le~-~~G~~  202 (289)
                      +|-.+.+-|+||++|+...-.+ -+..++|.+.+|--.+.+|+ .+++.
T Consensus        51 ~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          51 SPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             chhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            4545567899999998777764 68899999999999999998 34543

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=0.17  Score=46.93  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             cCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 023003          162 SGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVY  222 (289)
Q Consensus       162 ~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~~fl~lyl~~gi~g~l~~~l~  222 (289)
                      ..|+||++.+.|.-.+-..++.-++.+|.+ +.+|+.+|+.+|..+.+.++..+.++.+++
T Consensus        48 y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   48 YFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            369999999999999999988888877766 889999999999999998888888776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	8e-17
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-16

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           V + ++IA   VF+  +I   + +        D  L        T A  H  + HI+ N+
Sbjct: 6   VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL 65

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---------------AFLAMSS 230
           +  ++ G ++ + LG   L+ + +  A+        +                 ++ +  
Sbjct: 66  LWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRG 125

Query: 231 KRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAV-AALAW 281
           +R     +   R   +   LI            +++  AH+ G AV  A+A+
Sbjct: 126 ERDPQSGIYLQR-GLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAF 176

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 19/180 (10%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           +   L      +++  ++     +               +   I+    H+   HI+ N+
Sbjct: 11  ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL 70

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---------------AFLAMSS 230
              + FG  I RT G   LL LY+  +                           ++ +  
Sbjct: 71  SWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRD 130

Query: 231 KRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGA---AVAALAWARIRRR 287
           K        P     + +  I    +  + G   +  +AH+ G     +     +++R+ 
Sbjct: 131 KLNHHLFDLPEGFFTMLLVGIALGFISPLFG-VEMGNAAHISGLIVGLIWGFIDSKLRKN 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.94

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=2e-27  Score=205.69  Aligned_cols=160  Identities=18%  Similarity=0.235  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~  202 (289)
                      .+++|..++++|+++|+++...+.+.+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|++
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~   82 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG   82 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            45799999999999999998876555567778888777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--e---------cccc-----hhH--HHHHHHHHHHHHhccCCCc
Q 023003          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--V---------DPSR-----TPA--LGVFLIGKDMLRIIEGNSN  264 (289)
Q Consensus       203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l---------~p~~-----~p~--l~~~~l~~~l~~~~~~~~~  264 (289)
                      +++.+|+.+++.+++.+++..+.  .++||||+++  +         .|..     .+.  +..+++..++... . .++
T Consensus        83 ~fl~~yl~~~i~~~l~~~~~~~~--~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~  158 (181)
T 2xov_A           83 KLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDL-F-GMS  158 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTS-S-CCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--CceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHHHHh-c-ccc
Confidence            99999999999999999887654  3789999885  1         1211     121  2223333333321 1 368


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 023003          265 ISGSAHLGGAAVAALAWARIRR  286 (289)
Q Consensus       265 vs~~AHLgGal~G~l~~~~lrk  286 (289)
                      +|+.||++|+++|+++...++|
T Consensus       159 v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          159 MANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988876

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.94  E-value=1.9e-27  Score=208.33  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=128.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~  202 (289)
                      .+++|..++++|+++|+++...+...+.+++.++|+.+.++|+||++|++|+|.|+.|+++||+.++.+|..+|+.+|++
T Consensus         8 ~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~   87 (196)
T 2nr9_A            8 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV   87 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            45799999999999999998876555567778888877889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEee--e---------cccc--h--hH--HHHHHHHHHHHHhccCCCch
Q 023003          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWV--V---------DPSR--T--PA--LGVFLIGKDMLRIIEGNSNI  265 (289)
Q Consensus       203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~--l---------~p~~--~--p~--l~~~~l~~~l~~~~~~~~~v  265 (289)
                      +++.+|+.+++.+++++++..+.  .++||||+++  +         .+..  .  +.  +..+++.+++.... ..+++
T Consensus        88 ~~l~~yl~~~~~~~l~~~~~~~~--~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  164 (196)
T 2nr9_A           88 KLLMLYVVASAITGYVQNYVSGP--AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPL-FGVEM  164 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCS-SCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--CeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhc-cCCCc
Confidence            99999999999999999887654  3789999886  1         1111  1  11  12222334443221 24589


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 023003          266 SGSAHLGGAAVAALAWARIRR  286 (289)
Q Consensus       266 s~~AHLgGal~G~l~~~~lrk  286 (289)
                      |+.||+||+++|++++..+++
T Consensus       165 ~~~aHlgG~l~G~l~~~~~~~  185 (196)
T 2nr9_A          165 GNAAHISGLIVGLIWGFIDSK  185 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	6e-11
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	3e-09

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (139), Expect = 6e-11
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           V + ++IA   VF+  +I   + +        D  L        T A  H  + HI+ N+
Sbjct: 6   VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL 65

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH--AFLAMSSKRQGM-------- 235
           +  ++ G ++ + LG   L+ + +  A+        +    F  +S     +        
Sbjct: 66  LWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRG 125

Query: 236 ----WVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAAVAAL 279
                     +   +   LI            +++  AH+ G AV   
Sbjct: 126 ERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLA 173

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 19/180 (10%)

Query: 126 VVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNM 185
           +   L      +++  ++     +               +   I+    H+   HI+ N+
Sbjct: 8   ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNL 67

Query: 186 IGLYFFGMSIGRTLGPEYLLKLYMAGAIGGSVFYLVYH---------------AFLAMSS 230
              + FG  I RT G   LL LY+  +                           ++ +  
Sbjct: 68  SWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRD 127

Query: 231 KRQGMWVVDPSRTPALGVFLIGKDMLRIIEGNSNISGSAHLGGAA---VAALAWARIRRR 287
           K        P     + +  I    +  + G   +  +AH+ G     +     +++R+ 
Sbjct: 128 KLNHHLFDLPEGFFTMLLVGIALGFISPLFG-VEMGNAAHISGLIVGLIWGFIDSKLRKN 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.92
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.92

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3e-25  Score=188.92  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=124.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~  202 (289)
                      .+++|..++++|+++|+++...+.+...+++..+.+...++|+||++||+|+|.|+.|+++||+.++.+|..+|+.+|++
T Consensus         3 ~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~   82 (180)
T d3b45a1           3 AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG   82 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccch
Confidence            57899999999999999988776555556666677777899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEeee-----------ccc---chhH-HHHHHHHHHHHH-hccCCCchh
Q 023003          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV-----------DPS---RTPA-LGVFLIGKDMLR-IIEGNSNIS  266 (289)
Q Consensus       203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~l-----------~p~---~~p~-l~~~~l~~~l~~-~~~~~~~vs  266 (289)
                      +++.+|+++++.|++..++..+.  ...|+||++..           .+.   ..+. .........+.. .....+++|
T Consensus        83 ~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (180)
T d3b45a1          83 KLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMA  160 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSC
T ss_pred             hheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHHHHHHHHhccCchH
Confidence            99999999999999999888764  45799998751           010   0111 111111111111 122357899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 023003          267 GSAHLGGAAVAALAWAR  283 (289)
Q Consensus       267 ~~AHLgGal~G~l~~~~  283 (289)
                      +.||++|+++|++++..
T Consensus       161 ~~aHlgG~l~G~~~~~~  177 (180)
T d3b45a1         161 NGAHIAGLAVGLAMAFV  177 (180)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998764

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=4.7e-26  Score=195.83  Aligned_cols=161  Identities=15%  Similarity=0.131  Sum_probs=124.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhcChhHHHhcccccccccccCCcceeeecccccCChHHHHHHHHHHHHHHHHHhhhcChh
Q 023003          123 SSEVVYGLIIANTAVFMLWRIADPKFMANNFTISLDNFLSGRLHTLITSAFSHIDVEHIVSNMIGLYFFGMSIGRTLGPE  202 (289)
Q Consensus       123 ~~~vt~~iI~inv~Vfll~~~~~~~~~~~~f~l~p~~i~~g~~wrllTs~F~H~~~~HLl~Nm~~L~~~G~~le~~~G~~  202 (289)
                      .+++|..++++|+++|+++.....+.+.+....++....++|+||++|++|+|.|+.|+++||+.++.+|..+|+..|++
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~   84 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSV   84 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999988866555544444556667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeeeeeEeee--------c---------ccchhHHHHHHHHHHHHHhccCCCch
Q 023003          203 YLLKLYMAGAIGGSVFYLVYHAFLAMSSKRQGMWVV--------D---------PSRTPALGVFLIGKDMLRIIEGNSNI  265 (289)
Q Consensus       203 ~fl~lyl~~gi~g~l~~~l~~~~~~~~~GaSGai~l--------~---------p~~~p~l~~~~l~~~l~~~~~~~~~v  265 (289)
                      +++.+|+.++++|++++.+..+.  ..+|+||+++-        .         +.+.....++.+.++..... ..+++
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~--~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  161 (189)
T d2nr9a1          85 KLLMLYVVASAITGYVQNYVSGP--AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPL-FGVEM  161 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCS-SCCTT
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCC--CcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHHHHHHHhc-cCCCh
Confidence            99999999999999998777653  45899998851        0         11111111222222322222 25789


Q ss_pred             hHHHHHHHHHHHHHHHHHHhc
Q 023003          266 SGSAHLGGAAVAALAWARIRR  286 (289)
Q Consensus       266 s~~AHLgGal~G~l~~~~lrk  286 (289)
                      |+.||++|+++|++++...+|
T Consensus       162 ~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         162 GNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999998776544