Citrus Sinensis ID: 023012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MPVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHccc
Coil and Loop (DISEMBL)
MPVQSIPLFETVFMRCTVTLILSYLWLRrsgqpifgpmHARNLLVLRALVGFLSLFSFVYSIqrlplsqatvlsfTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQavsgglvkpgeaislnvrgSDHMLAVLVGLFSSITGGISYCLIKaganasdqplvTVFSFGilaspaagiclfffeefvlpsfYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGmglsriapsfgRLVGCVLILVSVFYTMyigpekemndva
Flexible Loop (DISEMBL)
mpvqsiplfeTVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQavsgglvkpGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLektskvanVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMyigpekemndva
Low Complexity Region (SEG)
MPVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Disordered region (IsUnstruct)
*****IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG*********
Disordered Region (DISOPRED)
*P*QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM************
Disordered Region (DISEMBL)
MPVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Disordered Region (DISPRO)
*PVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA*****************GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE*******
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q08980	353	Probable transport protei	yes	no	0.951	0.776	0.232	3e-12
Q04835	414	Uncharacterized membrane	no	no	0.937	0.652	0.257	5e-12
Q8BY79	368	Solute carrier family 35	yes	no	0.892	0.698	0.227	5e-09
Q2M3R5	365	Solute carrier family 35	yes	no	0.784	0.619	0.232	8e-08

>sp|Q08980|YP264_YEAST Probable transport protein YPL264C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL264C PE=1 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 123/280 (43%), Gaps = 6/280 (2%)

Query: 10  ETVFMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVGFLSLFSFVYSIQRL 65
           + + +R ++T   + +++  + Q +    +GP   R  L+LR ++GF  +F   +S+  L
Sbjct: 53  QILLVRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILRGIMGFFGVFGMYFSLMYL 112

Query: 66  PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGL 125
            +S A +++F +P +    + ++L E     E  G  +SF GV+ I R        + G 
Sbjct: 113 SISDAVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTQGQ 172

Query: 126 VKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL-VTVFSFGILAS 184
             P + I         ++A+ V L         Y +I+   N +   + V+ FS      
Sbjct: 173 QSPQDDIVETQNPKLRLIAIGVSLLGVCGLSSVYIIIRYIGNKAHAIMSVSYFSLVTTVV 232

Query: 185 PAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243
            A G+ L       LP S+  + L L L I  F  ++LL  G+Q E+  + + + Y +V 
Sbjct: 233 AALGVLLIPSMSLQLPHSWKQWGLFLNLGISGFIHQILLTMGIQRERAGRGSLMTYTQVI 292

Query: 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283
               W + L    P+     G  +I+ S  + + +   K+
Sbjct: 293 YAVFWDVVLFHHWPNIWTWCGMAVIVSSTIWVINMRASKQ 332

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q04835|YM87_YEAST Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 4   QSIPLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLSLFSFV 59
           + I   + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF  +F   
Sbjct: 102 RQIKPLQILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFFGVFGMY 161

Query: 60  YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ 119
           YS+  L +S A +++F AP +    + +ILRE+    E  G  +S  GV+ I R      
Sbjct: 162 YSLMYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSLISLLGVVLIVR-----P 216

Query: 120 AVSGGLVKPGEAISLNVRGSD---HMLAVLVGLFSSITGGISYCLIK-AGANASDQPLVT 175
           +   G  +  ++ S  V  SD    ++A LVGL+  +     Y +I+  G  A     V+
Sbjct: 217 SFLFGTPELTDSSSQIVESSDPKSRLIATLVGLWGVLGMSCVYIIIRYIGKRAHAIMSVS 276

Query: 176 VFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKV 234
            FS         GI      +F +P S   ++L   L +  F  ++LL  G+Q E+  + 
Sbjct: 277 YFSLITAIVSFIGINTIPSMKFQIPHSKKQWILFGNLGVSGFIFQLLLTMGIQRERAGRG 336

Query: 235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278
           + + Y ++     W + L +  P+    +G ++I+ +  + + I
Sbjct: 337 SLMTYTQLLYAVFWDVALYKHWPNIWSWIGMIIIISATLWVIRI 380

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BY79|S35G1_MOUSE Solute carrier family 35 member G1 OS=Mus musculus GN=Slc35g1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 126/272 (46%), Gaps = 15/272 (5%)

Query: 3   VQSIPLFETVFMRCTVTL--ILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY 60
           VQ +   E    RC V +  I+  L  R++G    GP   R  L LR + G  ++    Y
Sbjct: 95  VQGVHAVEISAFRCVVQMLVIIPCLIYRKTG--FIGPKGQRLFLFLRGVFGSSAMILMYY 152

Query: 61  SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA 120
           + Q   L+ ATV++F+ P+  SI A I L+EK  + +      +  GV+ I R      +
Sbjct: 153 AFQTTSLADATVIAFSCPVFTSIFAWIFLKEKYSLWDAFFTLFAIAGVILIVRPPFIFGS 212

Query: 121 VSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFG 180
            + G+ +           S+H+      +  ++   I+  +++    + D   ++++ + 
Sbjct: 213 DTSGMRE---------SYSEHIKGTFAAIGHAVLAAITLVILRKMGKSVDY-FLSIWYYV 262

Query: 181 ILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY 239
           IL  P A I LF   E+ LP      L ++++ +L    ++ + + +Q+EK   VA ++ 
Sbjct: 263 ILGLPEAIIILFVIGEWSLPYCGLDRLFLILIGLLGLGGQIFITKAVQIEKAGLVAIMKT 322

Query: 240 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVS 271
           +++    ++ +      P++  + G + ++VS
Sbjct: 323 MDIVFAFIFQIAFFDNVPTWWTVGGALCVVVS 354

Mus musculus (taxid: 10090)

>sp|Q2M3R5|S35G1_HUMAN Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 19/245 (7%)

Query: 3   VQSIPLFETVFMRCTVTL--ILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY 60
           VQ +   E    RC   +  ++  L  R++G    GP   R  L+LR ++G  ++    Y
Sbjct: 92  VQDVHAVEISAFRCVFQMLVVIPCLIYRKTG--FIGPKGQRIFLILRGVLGSTAMMLIYY 149

Query: 61  SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA 120
           + Q + L+ ATV++F++P+  SI A I L+EK    +      +  GV+ I R      +
Sbjct: 150 AYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIVRPPFLFGS 209

Query: 121 VSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFG 180
            + G+ +           S H+      + S++    +  +++    + D   ++++ + 
Sbjct: 210 DTSGMEE---------SYSGHLKGTFAAIGSAVFAASTLVILRKMGKSVDY-FLSIWYYV 259

Query: 181 ILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFF---AEVLLARGLQLEKTSKVANV 237
           +L    + I L    E+ LP  Y  L  L L  +  F    ++ + + LQ+EK   VA +
Sbjct: 260 VLGLVESVIILSVLGEWSLP--YCGLDRLFLIFIGLFGLGGQIFITKALQIEKAGPVAIM 317

Query: 238 QYIEV 242
           + ++V
Sbjct: 318 KTMDV 322

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
225447127	390	PREDICTED: uncharacterized protein LOC10	0.968	0.715	0.744	1e-115
147835022	413	hypothetical protein VITISV_004002 [Viti	0.968	0.675	0.688	1e-111
224129018	393	predicted protein [Populus trichocarpa]	0.968	0.709	0.726	1e-111
255568715	425	Transmembrane protein, putative [Ricinus	0.906	0.614	0.702	1e-101
297831648	401	integral membrane family protein [Arabid	0.961	0.690	0.646	1e-97
18396156	401	nodulin MtN21 /EamA-like transporter pro	0.961	0.690	0.653	8e-97
21554090	401	unknown [Arabidopsis thaliana]	0.961	0.690	0.650	8e-96
449444715	392	PREDICTED: uncharacterized protein LOC10	0.975	0.716	0.599	1e-90
357462229	475	Membrane protein, putative [Medicago tru	0.763	0.463	0.650	7e-74
388513493	203	unknown [Lotus japonicus]	0.704	1.0	0.650	4e-67

>gi|225447127|ref|XP_002271163.1| PREDICTED: uncharacterized protein LOC100256852 [Vitis vinifera] gi|297739206|emb|CBI28857.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/282 (74%), Positives = 233/282 (82%), Gaps = 3/282 (1%)

Query: 4   QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 63
           QSIPLFET F RCTVTLILSY WLRRSGQPIFGP H R+LLV RAL+G+LSL SFVY IQ
Sbjct: 112 QSIPLFETAFTRCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQ 171

Query: 64  RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG 123
           RLPLSQA VLSFT PIMASI ARIIL EKL IAEIGGLA SF GVLFIFR IL  Q   G
Sbjct: 172 RLPLSQAVVLSFTTPIMASIMARIILHEKLNIAEIGGLACSFIGVLFIFRPILAAQ---G 228

Query: 124 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILA 183
           GL K  EA ++ V GSDH+ AVLVGL SSI+GGISYCL +AGA ASDQP++TVF+FG+L 
Sbjct: 229 GLPKAEEANNIYVGGSDHIYAVLVGLVSSISGGISYCLTRAGAKASDQPVITVFAFGMLG 288

Query: 184 SPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243
           SPAA IC F F++FVLPSFYSF LM++L++LAFFAEV LARGLQLEKTSK  N+QYIE A
Sbjct: 289 SPAAAICTFAFQDFVLPSFYSFFLMVILAVLAFFAEVFLARGLQLEKTSKATNIQYIEAA 348

Query: 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285
           L+QLWG+G S+IAPSFGRLVGC LI  S   TMY GP+KEM 
Sbjct: 349 LSQLWGLGSSKIAPSFGRLVGCFLIFASTCCTMYFGPDKEME 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835022|emb|CAN70194.1| hypothetical protein VITISV_004002 [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 233/305 (76%), Gaps = 26/305 (8%)

Query: 4   QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 63
           QSIPLFET F RCTVTLILSY WLRRSGQPIFGP H R+LLV RAL+G+LSL SFVY IQ
Sbjct: 112 QSIPLFETAFTRCTVTLILSYFWLRRSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQ 171

Query: 64  RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIG-----------------------G 100
           RLPLSQA VLSFT PIMASI ARIIL EKL IAEIG                       G
Sbjct: 172 RLPLSQAVVLSFTTPIMASIMARIILHEKLNIAEIGELYTYFCEAGGETDCFVBCIYFPG 231

Query: 101 LALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC 160
           LA SF GVLFIFR IL  Q   GGL K  EA ++ V GSDH+ AVLVGL SSI+GGISYC
Sbjct: 232 LACSFIGVLFIFRPILAAQ---GGLPKAEEANNIYVGGSDHIYAVLVGLVSSISGGISYC 288

Query: 161 LIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEV 220
           L +AGA ASDQP++TVF+FG+L SPAA IC F F++FVLPSFYSF LM++L++LAFFAEV
Sbjct: 289 LTRAGAKASDQPVITVFAFGMLGSPAAAICTFAFQDFVLPSFYSFFLMVILAVLAFFAEV 348

Query: 221 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 280
            LARGLQLEKTSK  N+QYIE AL+QLWG+G S+IAPSFGRLVGC LI  S   TMY GP
Sbjct: 349 FLARGLQLEKTSKATNIQYIEAALSQLWGLGSSKIAPSFGRLVGCFLIFASTCCTMYFGP 408

Query: 281 EKEMN 285
           +KEM 
Sbjct: 409 DKEME 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129018|ref|XP_002320480.1| predicted protein [Populus trichocarpa] gi|222861253|gb|EEE98795.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/282 (72%), Positives = 232/282 (82%), Gaps = 3/282 (1%)

Query: 4   QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 63
           QSIPLFET F RCT+TLILSYLWLR +GQPIFGP HAR  L  RAL G LSL SF+Y I+
Sbjct: 115 QSIPLFETAFARCTITLILSYLWLRGNGQPIFGPAHARKFLFSRALTGCLSLLSFIYCIR 174

Query: 64  RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG 123
           RLPLSQA VLSFT PIMASI ARIIL EKLKI ++GGLA SFFGVLFIFR+ILTTQ   G
Sbjct: 175 RLPLSQAIVLSFTTPIMASIVARIILHEKLKIVDVGGLACSFFGVLFIFRQILTTQ---G 231

Query: 124 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILA 183
            L++ GE   + + G +H+L VLV LFSSITGGISYCL+KAGA ASDQPL TVFSFGILA
Sbjct: 232 ALLRVGETNYIAIMGRNHVLTVLVALFSSITGGISYCLVKAGAKASDQPLATVFSFGILA 291

Query: 184 SPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243
           +PA G+C F FEEFVLP+FY+F LML+L +L+F AEV  ARGLQLEKTSK ANV Y+EVA
Sbjct: 292 TPATGMCAFAFEEFVLPNFYTFFLMLILGLLSFSAEVFFARGLQLEKTSKAANVLYMEVA 351

Query: 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285
           L+QLWG+G  RI PSFG LVGC+LIL+SV  T+YIGPEKEM 
Sbjct: 352 LSQLWGIGSWRITPSFGGLVGCLLILISVCCTIYIGPEKEME 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568715|ref|XP_002525329.1| Transmembrane protein, putative [Ricinus communis] gi|223535388|gb|EEF37062.1| Transmembrane protein, putative [Ricinus communis]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/269 (70%), Positives = 217/269 (80%), Gaps = 8/269 (2%)

Query: 3   VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
            +SIPLFET FMRCT+ LILSY+WLRRSGQPIFG +HAR LL LRAL GFLSL SF+Y I
Sbjct: 122 TRSIPLFETAFMRCTIVLILSYIWLRRSGQPIFGAVHARKLLFLRALTGFLSLLSFIYCI 181

Query: 63  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
           QRLP SQA +L+FT PI+ASI AR++L EKLKIA+IGGL  SFFGVLFI+R+IL TQA  
Sbjct: 182 QRLPFSQAIILNFTTPIVASILARLMLHEKLKIADIGGLTCSFFGVLFIYRQILRTQA-- 239

Query: 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
                 GEA + +  GS H+ AVL GL S ITGGISYC IKAGA ASDQP+VTVFSFG+L
Sbjct: 240 ------GEANNTSASGSHHVYAVLAGLLSLITGGISYCFIKAGAKASDQPVVTVFSFGLL 293

Query: 183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
           +SPAAGIC F FEEFV+P F SFLLML+L +LAF  EVLLARGLQLEK SK  NVQYIE 
Sbjct: 294 SSPAAGICAFAFEEFVVPDFCSFLLMLILGVLAFIVEVLLARGLQLEKISKATNVQYIEA 353

Query: 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVS 271
           AL+QLWG+  SRI+ SF  LVGC+LI++S
Sbjct: 354 ALSQLWGIDSSRISSSFAGLVGCLLIIIS 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831648|ref|XP_002883706.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297329546|gb|EFH59965.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/286 (64%), Positives = 221/286 (77%), Gaps = 9/286 (3%)

Query: 3   VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
           VQ IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SI
Sbjct: 120 VQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSI 179

Query: 63  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
           Q LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q  S
Sbjct: 180 QMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQVGS 239

Query: 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
                  E  + N++G+ H+ A  +GLFSSITGGI+YCLIKA A AS+QP++TVFSFG++
Sbjct: 240 -------EGTNENLKGNHHIYAFWLGLFSSITGGITYCLIKAAAKASEQPVITVFSFGLV 292

Query: 183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
           A PAA IC+F FE FVLP+F + + M+VL +LAF AEVLLARGLQLEK SK AN+ YIEV
Sbjct: 293 ACPAAAICMFSFESFVLPAFDTLITMIVLGLLAFCAEVLLARGLQLEKISKAANILYIEV 352

Query: 243 ALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYTMYIGPEKEMND 286
            L+QLW +   +      F RLVGC+LIL+SV YT+Y+GP K+   
Sbjct: 353 VLSQLWIVSTGKAGSPGLFSRLVGCLLILISVSYTVYMGPAKDTES 398

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396156|ref|NP_565328.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|20198220|gb|AAM15467.1| Expressed protein [Arabidopsis thaliana] gi|109134115|gb|ABG25056.1| At2g05755 [Arabidopsis thaliana] gi|110738794|dbj|BAF01320.1| hypothetical protein [Arabidopsis thaliana] gi|330250873|gb|AEC05967.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 187/286 (65%), Positives = 220/286 (76%), Gaps = 9/286 (3%)

Query: 3   VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
           VQ IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SI
Sbjct: 120 VQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSI 179

Query: 63  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
           Q LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   
Sbjct: 180 QMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQV-- 237

Query: 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
            GL    E    N++G+ H+ A L+GLFSSITGGI+YCLIKA A AS+QP++TV SFG++
Sbjct: 238 -GLEGKNE----NLKGNHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLV 292

Query: 183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
           A PA  IC+F FE FVLP+F + + M+VL +LAF AEVLLARGLQLEK SK ANV YIEV
Sbjct: 293 ACPATAICMFSFESFVLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEV 352

Query: 243 ALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYTMYIGPEKEMND 286
            L+QLW +   +      F RLVGC+LIL+SV YT+YIGP K+   
Sbjct: 353 VLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVYIGPAKDTES 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554090|gb|AAM63171.1| unknown [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 219/286 (76%), Gaps = 9/286 (3%)

Query: 3   VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
           VQ IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SI
Sbjct: 120 VQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSI 179

Query: 63  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
           Q LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   
Sbjct: 180 QMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQV-- 237

Query: 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
            GL    E    N++ + H+ A L+GLFSSITGGI+YCLIKA A AS+QP++TV SFG++
Sbjct: 238 -GLEGKNE----NLKENHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLV 292

Query: 183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
           A PA  IC+F FE FVLP+F + + M+VL +LAF AEVLLARGLQLEK SK ANV YIEV
Sbjct: 293 ACPATAICMFSFESFVLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEV 352

Query: 243 ALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYTMYIGPEKEMND 286
            L+QLW +   +      F RLVGC+LIL+SV YT+YIGP K+   
Sbjct: 353 VLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVYIGPAKDTES 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444715|ref|XP_004140119.1| PREDICTED: uncharacterized protein LOC101208388 [Cucumis sativus] gi|449481153|ref|XP_004156097.1| PREDICTED: uncharacterized protein LOC101226055 [Cucumis sativus]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/282 (59%), Positives = 207/282 (73%), Gaps = 1/282 (0%)

Query: 4   QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ 63
           QSIP+ E  F RC +  ILSYLWLRRS QPIFG  H R LLV RAL G LS+ SF+YSI+
Sbjct: 112 QSIPIIEMAFTRCVIITILSYLWLRRSEQPIFGQPHVRKLLVSRALTGLLSMMSFIYSIR 171

Query: 64  RLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG 123
           RL +SQA VLSFT PI+AS+AAR IL EK K ++ GGLA SF GVL IF+ + T+Q    
Sbjct: 172 RLHISQAIVLSFTTPILASVAARFILNEKFKFSDFGGLACSFLGVLLIFQDLFTSQGTEA 231

Query: 124 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILA 183
           GL K G+  +    GS H  AVLVG  +SI G +SYCLI+A A ASDQP+VTVFSFG+LA
Sbjct: 232 GLTKAGKGSTTPSLGSHHAYAVLVGFVASIAGAVSYCLIRASAKASDQPVVTVFSFGLLA 291

Query: 184 SPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243
            P  GIC   FE+ VLPS YSFL+MLVL +LAF AEV  ARGLQLEKTSKV N++++E +
Sbjct: 292 GPVTGICTVVFEDLVLPSVYSFLVMLVLGLLAFLAEVCWARGLQLEKTSKVNNLRFMEAS 351

Query: 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285
           L QLW +G+  + P FGR+VG +LI +S+ +T Y+GP+KEM 
Sbjct: 352 LVQLWHIGILGVVP-FGRIVGTLLIFLSLCWTFYVGPDKEME 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462229|ref|XP_003601396.1| Membrane protein, putative [Medicago truncatula] gi|355490444|gb|AES71647.1| Membrane protein, putative [Medicago truncatula]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 145/223 (65%), Positives = 172/223 (77%), Gaps = 3/223 (1%)

Query: 63  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
           Q+LP  QA VL+ T PIMAS+ AR  LREKLKIA+I  LA SFFGVLF FR +L TQ   
Sbjct: 256 QKLPFVQAVVLNSTTPIMASVMARFFLREKLKIADIASLACSFFGVLFFFREMLATQ--- 312

Query: 123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
           G L K  EA + N + +  + A+LVG+FSSI GG SYCLIKAGA ASDQPL+TVFSFGIL
Sbjct: 313 GQLDKVDEASNANAKPTHQIFAILVGIFSSIIGGTSYCLIKAGAKASDQPLLTVFSFGIL 372

Query: 183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
           ASPA GIC + FE+FVLP+  S LLM+VL ILAFFAEVLLARGLQLE+  KVAN+QY+E 
Sbjct: 373 ASPAMGICTYAFEDFVLPTVQSILLMVVLGILAFFAEVLLARGLQLERMGKVANIQYMEA 432

Query: 243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 285
           ALTQ W + L+ ++P+F  LVG +LI+VSV  TMYIGP+KEM 
Sbjct: 433 ALTQFWSLTLTLVSPAFDHLVGILLIVVSVCCTMYIGPDKEME 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513493|gb|AFK44808.1| unknown [Lotus japonicus]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 134/206 (65%), Positives = 158/206 (76%), Gaps = 3/206 (1%)

Query: 80  MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGS 139
           MASI AR+ LREKLKI++I GLA SFFGVLF FR +L TQ   G L K  EA   +   S
Sbjct: 1   MASIMARVFLREKLKISDITGLACSFFGVLFFFRELLATQ---GQLAKAEEARKGSSTTS 57

Query: 140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL 199
            H+  +L+GLFSSI GG SYCL +AGA ASDQPL+TVFSFG+ ASPA GIC + FE+FVL
Sbjct: 58  HHIFMILLGLFSSIIGGTSYCLTRAGAKASDQPLLTVFSFGVPASPAMGICTYIFEDFVL 117

Query: 200 PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSF 259
           P F   +LMLVL ILAFFAEVLLARGLQLEKT KVAN+ YIE ALTQ W +  +R+APSF
Sbjct: 118 PGFQPTVLMLVLGILAFFAEVLLARGLQLEKTGKVANILYIEAALTQFWSLAFTRVAPSF 177

Query: 260 GRLVGCVLILVSVFYTMYIGPEKEMN 285
             LVG +LI++SV +T+YIGP+KEM 
Sbjct: 178 DHLVGILLIVISVGFTLYIGPDKEME 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:505006238	401	AT2G05755 [Arabidopsis thalian	0.951	0.683	0.664	2.7e-91
CGD|CAL0006171	460	orf19.2204 [Candida albicans (	0.937	0.586	0.276	6.6e-21
UNIPROTKB|Q5A2K2	460	CaO19.2204 "Putative uncharact	0.937	0.586	0.276	6.6e-21
DICTYBASE|DDB_G0292606	698	tmem20 "EamA-like transporter	0.892	0.368	0.285	7.4e-21
DICTYBASE|DDB_G0282673	510	DDB_G0282673 "Uncharacterized	0.795	0.449	0.311	1.6e-20
UNIPROTKB|G4NII1	438	MGG_09833 "Uncharacterized pro	0.378	0.248	0.360	3.8e-19
SGD|S000004866	414	YMR253C "Putative protein of u	0.920	0.640	0.265	5.7e-18
SGD|S000006185	353	YPL264C "Putative membrane pro	0.954	0.779	0.265	1.7e-17
UNIPROTKB|Q47WD7	291	CPS_4235 "Membrane protein" [C	0.368	0.364	0.324	1.2e-15
TIGR_CMR|CPS_4235	291	CPS_4235 "membrane protein" [C	0.368	0.364	0.324	1.2e-15

TAIR|locus:505006238 AT2G05755 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 188/283 (66%), Positives = 222/283 (78%)

Query:     3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
             VQ IPLFET FMRCT+ LILSYLWL+R GQPIFGP HAR LLV RALVG+LSLFSF++SI
Sbjct:   120 VQPIPLFETAFMRCTIILILSYLWLKRIGQPIFGPAHARKLLVSRALVGYLSLFSFIFSI 179

Query:    63 QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 122
             Q LPLSQA VLSF  PIMASIAAR+++ EKLKI +IGGLA SFFGVLFIF   LT Q   
Sbjct:   180 QMLPLSQAIVLSFLNPIMASIAARVVMHEKLKITDIGGLACSFFGVLFIFGPTLTVQV-- 237

Query:   123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 182
              GL    E    N++G+ H+ A L+GLFSSITGGI+YCLIKA A AS+QP++TV SFG++
Sbjct:   238 -GLEGKNE----NLKGNHHIYAFLLGLFSSITGGITYCLIKAAAKASEQPVITVLSFGLV 292

Query:   183 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 242
             A PA  IC+F FE FVLP+F + + M+VL +LAF AEVLLARGLQLEK SK ANV YIEV
Sbjct:   293 ACPATAICMFSFESFVLPAFDTLVSMIVLGLLAFCAEVLLARGLQLEKISKAANVLYIEV 352

Query:   243 ALTQLWGMGLSRI-APS-FGRLVGCVLILVSVFYTMYIGPEKE 283
              L+QLW +   +  +P  F RLVGC+LIL+SV YT+YIGP K+
Sbjct:   353 VLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVYIGPAKD 395

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

CGD|CAL0006171 orf19.2204 [Candida albicans (taxid:5476)]

 Score = 251 (93.4 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 78/282 (27%), Positives = 127/282 (45%)

Query:    10 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 66
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:    67 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 126
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I +        S    
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLIAKPTFIFGNESNKET 259

Query:   127 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI--KAGANASDQPLVTVFSFGILAS 184
                E I  +      +LA +VGL   + G  S  ++  K G NA   PL++V  F +   
Sbjct:   260 GNDETIESS-SSEKRILATIVGLIG-VCGASSVYIVLRKIGMNA--HPLLSVSYFALTCC 315

Query:   185 PAAGICLFFFEE--FVLPS-FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE 241
                 + +       FVLP+  Y + L  ++    FF +  L  G+Q  K ++ + + Y  
Sbjct:   316 IVTFLAILVIPSLTFVLPTNAYQWTLFFIIGFSGFFMQFSLTAGVQRVKAARASLMAYSG 375

Query:   242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283
             +    +W + +    P     +G  LI+ +    +   P++E
Sbjct:   376 MIFAVVWDLTIWHHFPGILSFLGITLIIGNAIIILKFKPQQE 417

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A2K2 CaO19.2204 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 251 (93.4 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 78/282 (27%), Positives = 127/282 (45%)

Query:    10 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 66
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:    67 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 126
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I +        S    
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLIAKPTFIFGNESNKET 259

Query:   127 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI--KAGANASDQPLVTVFSFGILAS 184
                E I  +      +LA +VGL   + G  S  ++  K G NA   PL++V  F +   
Sbjct:   260 GNDETIESS-SSEKRILATIVGLIG-VCGASSVYIVLRKIGMNA--HPLLSVSYFALTCC 315

Query:   185 PAAGICLFFFEE--FVLPS-FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE 241
                 + +       FVLP+  Y + L  ++    FF +  L  G+Q  K ++ + + Y  
Sbjct:   316 IVTFLAILVIPSLTFVLPTNAYQWTLFFIIGFSGFFMQFSLTAGVQRVKAARASLMAYSG 375

Query:   242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 283
             +    +W + +    P     +G  LI+ +    +   P++E
Sbjct:   376 MIFAVVWDLTIWHHFPGILSFLGITLIIGNAIIILKFKPQQE 417

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0292606 tmem20 "EamA-like transporter Tmem20" [Dictyostelium discoideum (taxid:44689)]

 Score = 255 (94.8 bits), Expect = 7.4e-21, P = 7.4e-21
 Identities = 78/273 (28%), Positives = 133/273 (48%)

Query:    10 ETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQ 69
             E  FMR    LI   + L    +   GP + R  L  R L G +SL ++ Y++  LPLS+
Sbjct:   435 EIAFMRSFYGLIGCIIILFSLRENPLGPKNVRWFLAARGLSGAISLCAYFYTLTVLPLSE 494

Query:    70 ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR-RILTTQAVSGGLVKP 128
             A ++SFT+P++ +  A ++L+EK    E     LS  GV+ + +   L      G   + 
Sbjct:   495 AVIISFTSPVITAALAAVVLKEKWGGIEAICAFLSLCGVVVVSKPSFLFHHHTDGSTTEN 554

Query:   129 GEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAG 188
             GE        S  +L VL+G+  +    +SY  ++     S  P V V  F  ++S    
Sbjct:   555 GE-------DSGKLLYVLIGVGGAFFTAVSYIAVRK-VGPSVNPFVLVIYFSAVSS---A 603

Query:   189 ICL---FFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQL-EKTSKVANVQYIEVAL 244
             +CL   F F+ FV PS  ++  + ++ ++A  A+  +  G+QL +KTS  A + Y+++  
Sbjct:   604 LCLPSSFAFQTFVWPSLKAWGYITLIGVVATIAQGAVNAGIQLSKKTSTAAAMNYLQIIF 663

Query:   245 TQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277
             T +W + L      +  ++G +LIL     T +
Sbjct:   664 TFIWQITLMHQPLDWITILGALLILCCAGITAF 696

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0282673 DDB_G0282673 "Uncharacterized membrane protein YMR253C" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 76/244 (31%), Positives = 118/244 (48%)

Query:    10 ETVFMR---CTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 66
             E  F R   C +  +L    L+ +  P+ GP   R  L LR L G + L ++ YSI  LP
Sbjct:   246 EIAFFRSFYCFIGCLLILFPLKIN--PL-GPKEKRLFLSLRGLSGTIGLCAYFYSITVLP 302

Query:    67 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 126
             LS+A ++SFT+P+M +  A ++L+EK    +     LS  G+  I +             
Sbjct:   303 LSEAVIISFTSPVMTAALAAVLLKEKWGPVQAICAFLSLCGITVISKPSFLFHDDHND-- 360

Query:   127 KPGEAISLNVRGSDH-MLAVLVGLFSSITGGISYCLI-KAGANASDQPLVTVFSFGILAS 184
               G   S +  G  H +L +  G+  +  G ISY  + K G N     LVT FS G LAS
Sbjct:   361 --GSTAS-HAEGDPHKLLYIFTGIIGAFFGAISYIAVRKVGPNVHAFVLVTYFS-G-LAS 415

Query:   185 PAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVAL 244
                    F F+ F  PS  ++  + ++ +    A+  + RG+QLEK +K A + Y+++  
Sbjct:   416 LVTFPSAFIFQTFKWPSLKAWGWITLMGVFGTVAQGAVNRGIQLEKAAKAAAMNYLQIIF 475

Query:   245 TQLW 248
             T +W
Sbjct:   476 TFIW 479

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|G4NII1 MGG_09833 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 163 (62.4 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
 Identities = 40/111 (36%), Positives = 53/111 (47%)

Query:     5 SIPLFETVFMRCTVTLILS--YLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
             S      +F+R   T IL   Y+W +      FG    R LL+LR   GF  L    YS+
Sbjct:   102 SFHALHVIFVRMLATAILGLLYMWWKSVPDAPFGDRRVRGLLLLRGASGFSGLLGLYYSL 161

Query:    63 QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113
               LPLS AT +SF  P + +I   + L+E +   E     L+F GVL I R
Sbjct:   162 SYLPLSDATFISFIIPAITAIVCFVFLKEPMSKHETFAGVLAFTGVLLIAR 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000004866 YMR253C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 223 (83.6 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 75/282 (26%), Positives = 132/282 (46%)

Query:     7 PLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 62
             PL + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF  +F   YS+
Sbjct:   106 PL-QILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFFGVFGMYYSL 164

Query:    63 QRLPLSQATVLSFTAPIMASIAARIILREKL-KIAEIGGLALSFFGVLFIFRRILTTQAV 121
               L +S A +++F AP +    + +ILRE+  K+  +G L +S  GV+ I R      + 
Sbjct:   165 MYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSL-ISLLGVVLIVR-----PSF 218

Query:   122 SGGLVKPGEAISLNVRGSD---HMLAVLVGLFSSITGGISYCLIK-AGANASDQPLVTVF 177
               G  +  ++ S  V  SD    ++A LVGL+  +     Y +I+  G  A     V+ F
Sbjct:   219 LFGTPELTDSSSQIVESSDPKSRLIATLVGLWGVLGMSCVYIIIRYIGKRAHAIMSVSYF 278

Query:   178 SFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN 236
             S         GI      +F +P S   ++L   L +  F  ++LL  G+Q E+  + + 
Sbjct:   279 SLITAIVSFIGINTIPSMKFQIPHSKKQWILFGNLGVSGFIFQLLLTMGIQRERAGRGSL 338

Query:   237 VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 278
             + Y ++     W + L +  P+    +G ++I+ +  + + I
Sbjct:   339 MTYTQLLYAVFWDVALYKHWPNIWSWIGMIIIISATLWVIRI 380

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000006185 YPL264C "Putative membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 216 (81.1 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 75/282 (26%), Positives = 126/282 (44%)

Query:    12 VFMRCTVTLILSYL-WLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQ 69
             V M  T    L Y+ W ++S   I +GP   R  L+LR ++GF  +F   +S+  L +S 
Sbjct:    57 VRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILRGIMGFFGVFGMYFSLMYLSISD 116

Query:    70 ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 129
             A +++F +P +    + ++L E     E  G  +SF GV+ I R        + G   P 
Sbjct:   117 AVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTQGQQSPQ 176

Query:   130 EAISLNVRGSDHMLAVLVGLFSSITGGIS-YCLIKAGANASDQPL-VTVFSFGILASPAA 187
             + I         ++A+ V L   + G  S Y +I+   N +   + V+ FS       A 
Sbjct:   177 DDIVETQNPKLRLIAIGVSLLG-VCGLSSVYIIIRYIGNKAHAIMSVSYFSLVTTVVAAL 235

Query:   188 GICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQ 246
             G+ L       LP S+  + L L L I  F  ++LL  G+Q E+  + + + Y +V    
Sbjct:   236 GVLLIPSMSLQLPHSWKQWGLFLNLGISGFIHQILLTMGIQRERAGRGSLMTYTQVIYAV 295

Query:   247 LWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA 288
              W + L    P+     G  +I+ S  + + +   K+ N VA
Sbjct:   296 FWDVVLFHHWPNIWTWCGMAVIVSSTIWVINMRASKQ-NVVA 336

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISM

UNIPROTKB|Q47WD7 CPS_4235 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:     6 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 65
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:    66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4235 CPS_4235 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:     6 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 65
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:    66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00141051 hypothetical protein (393 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-07
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	3e-06

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 3   VQSIPLFETVFMRCTVT--LILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVY 60
           ++ I        R  +   L++  L+L R    +        LL L      L    + Y
Sbjct: 14  LERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFY 73

Query: 61  SIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 113
           +++ +  S A+V++  +P+   I + ++L EKL + ++ G+ L   GVL I  
Sbjct: 74  ALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 22/274 (8%)

Query: 6   IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFLSLFSFVYSIQR 64
            P      +R  +  +L    L    + +   +     LL+L  L   L       +++ 
Sbjct: 34  DPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKY 93

Query: 65  LPLSQATVLSFTAPIMASIAARIIL-REKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG 123
              S A+++    P+  ++ A ++L  E+L + +I G+ L+  GVL I         +S 
Sbjct: 94  TSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS- 152

Query: 124 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILA 183
                             +L +L+ L +++   +   L+K  +      L  +    +LA
Sbjct: 153 ------------------LLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQL-LLA 193

Query: 184 SPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVA 243
                +         + S    LL+ +       A +L    L+L   S VA +  +E  
Sbjct: 194 LLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPV 253

Query: 244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 277
              L G+ L     S  +L+G  L+++ V     
Sbjct: 254 FAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.97
PRK15430	296	putative chloramphenical resistance permease RarD;	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.96
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.93
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.91
COG2962	293	RarD Predicted permeases [General function predict	99.9
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.89
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.87
KOG2765	416	consensus Predicted membrane protein [Function unk	99.83
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.7
COG2510	140	Predicted membrane protein [Function unknown]	99.69
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.65
COG2510	140	Predicted membrane protein [Function unknown]	99.61
KOG1581	327	consensus UDP-galactose transporter related protei	99.58
KOG1580	337	consensus UDP-galactose transporter related protei	99.57
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.52
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.51
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.49
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.45
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.4
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.39
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.34
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.34
KOG2766	336	consensus Predicted membrane protein [Function unk	99.33
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.27
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.21
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.18
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.18
PRK15430	296	putative chloramphenical resistance permease RarD;	99.17
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.11
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.08
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.03
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.01
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.97
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.95
PLN00411	358	nodulin MtN21 family protein; Provisional	98.94
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.89
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.8
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.77
PRK11272	292	putative DMT superfamily transporter inner membran	98.77
PRK13499	345	rhamnose-proton symporter; Provisional	98.77
COG2962	293	RarD Predicted permeases [General function predict	98.74
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.69
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.67
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.67
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.67
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.66
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.65
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.64
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.6
PRK11689	295	aromatic amino acid exporter; Provisional	98.56
KOG1582	367	consensus UDP-galactose transporter related protei	98.51
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.49
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.43
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.34
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.23
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.21
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.15
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.07
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.05
COG2076	106	EmrE Membrane transporters of cations and cationic	98.04
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.01
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.98
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.97
PRK11431	105	multidrug efflux system protein; Provisional	97.93
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.91
PRK13499	345	rhamnose-proton symporter; Provisional	97.84
COG2076	106	EmrE Membrane transporters of cations and cationic	97.74
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.73
PRK11431	105	multidrug efflux system protein; Provisional	97.7
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.68
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.61
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.59
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.58
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.57
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.47
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.42
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.41
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.37
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.37
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.32
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.92
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.57
KOG1580	337	consensus UDP-galactose transporter related protei	96.34
KOG1581	327	consensus UDP-galactose transporter related protei	96.29
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.27
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.09
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.8
KOG2765	416	consensus Predicted membrane protein [Function unk	95.8
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	95.19
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.01
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.75
PRK02237	109	hypothetical protein; Provisional	94.13
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.89
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	92.71
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	91.94
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	91.02
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	90.02
PRK02237	109	hypothetical protein; Provisional	89.74
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	88.3
KOG1582	367	consensus UDP-galactose transporter related protei	87.07
KOG3912	372	consensus Predicted integral membrane protein [Gen	86.9
KOG1443	349	consensus Predicted integral membrane protein [Fun	85.29
COG1742	109	Uncharacterized conserved protein [Function unknow	85.04
KOG4831	125	consensus Unnamed protein [Function unknown]	84.73
COG1742	109	Uncharacterized conserved protein [Function unknow	84.49
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	81.81
KOG4831	125	consensus Unnamed protein [Function unknown]	81.16

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=3e-33  Score=245.38  Aligned_cols=280  Identities=14%  Similarity=0.143  Sum_probs=206.1

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCC-CC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PI--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      ..+++|..+.++|+.++.+++.++.+.+++ +.  +.+++.+..+.+.++++...+.+++.+++++++++++++.+++|+
T Consensus        37 ~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~  116 (358)
T PLN00411         37 SKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPA  116 (358)
T ss_pred             HCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence            357899999999999999988887654432 21  122334455666666666677789999999999999999999999


Q ss_pred             HHHHHHHHH------hcccchHHHHHHHHHHHHhhhheeccccccccc--CCCCCCCccccc-ccccchhhHHHHHHHHH
Q 023012           80 MASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAV--SGGLVKPGEAIS-LNVRGSDHMLAVLVGLF  150 (288)
Q Consensus        80 ~~~ll~~~~------l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~G~l~~l~  150 (288)
                      ++.++++++      +|||+++++++|++++++|+.++..++......  ++..++..+... +.....+...|.++.+.
T Consensus       117 ~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~  196 (358)
T PLN00411        117 LTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI  196 (358)
T ss_pred             HHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHH
Confidence            999999999      699999999999999999999877543211000  000000000000 00112233669999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--c----cCchHHHHHHHHHHHHHHHHHHHHHH
Q 023012          151 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--V----LPSFYSFLLMLVLSILAFFAEVLLAR  224 (288)
Q Consensus       151 ~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~gi~~~~~~~~~~~  224 (288)
                      ++++|+++.++.|+..++.++......++...+.+.........++.  .    ..+.. ...+++.++.+.++|.+|++
T Consensus       197 aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~lw~~  275 (358)
T PLN00411        197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITSVYYVIHSW  275 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999766554555556666666655554444433221  1    11222 33466677766699999999


Q ss_pred             hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012          225 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE  283 (288)
Q Consensus       225 al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~  283 (288)
                      ++++.+|++++.+.+++|+++.+++++++||++++.+++|+++|++|+.+..+.++|+.
T Consensus       276 ~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~  334 (358)
T PLN00411        276 TVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE  334 (358)
T ss_pred             HHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999887655543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=229.99  Aligned_cols=254  Identities=17%  Similarity=0.124  Sum_probs=204.0

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHH-hhcccchhHHHHhhhHHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFVYSI-QRLPLSQATVLSFTAPIM   80 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~-~~~~~~~~~~i~~~~P~~   80 (288)
                      .+++||.+++++|+.++.+++.++...++++. ++++.++.....|... ..+..+++.+. +++++++++++.++.|++
T Consensus        31 ~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~  109 (292)
T PRK11272         31 VESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLF  109 (292)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            45899999999999999998888776655443 2344444455555444 56778888998 999999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 023012           81 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC  160 (288)
Q Consensus        81 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v  160 (288)
                      +.+++++ +|||+++++++|+.++++|+.++..++.                     .+.+..|++++++++++||.+.+
T Consensus       110 ~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~---------------------~~~~~~G~l~~l~a~~~~a~~~~  167 (292)
T PRK11272        110 TLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN---------------------LSGNPWGAILILIASASWAFGSV  167 (292)
T ss_pred             HHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc---------------------cccchHHHHHHHHHHHHHHHHHH
Confidence            9999985 7999999999999999999988754321                     01245799999999999999999


Q ss_pred             HHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc-cCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeeh
Q 023012          161 LIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FV-LPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANV  237 (288)
Q Consensus       161 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~  237 (288)
                      ..|+..+ .+ +.....++...+.+...+.....+. +. .++...|..+.+.++++. +++.+|++++++.++++++.+
T Consensus       168 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~  245 (292)
T PRK11272        168 WSSRLPL-PV-GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY  245 (292)
T ss_pred             HHHhcCC-Cc-chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            9999653 33 3344556666666555554443332 22 246788999999998865 999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012          238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE  281 (288)
Q Consensus       238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  281 (288)
                      .++||+++.+++++++||+++..+++|+.+++.|+.+..++++|
T Consensus       246 ~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        246 AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999988776654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=2e-31  Score=230.15  Aligned_cols=261  Identities=15%  Similarity=0.109  Sum_probs=195.6

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh----hcccchhHHHHhhhH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQ----RLPLSQATVLSFTAP   78 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~i~~~~P   78 (288)
                      .+++||..+.+.|+.++.+++.++..+   +. .+++.++....+++.......+++.+++    +.++++++++.+++|
T Consensus        27 ~~~~~P~~~~~~R~~~a~l~l~~~~~~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~P  102 (295)
T PRK11689         27 SESLGPVGGAAMIYSVSGLLLLLTVGF---PR-LRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWP  102 (295)
T ss_pred             HccCChHHHHHHHHHHHHHHHHHHccc---cc-cccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhH
Confidence            568999999999999999888765321   11 1223344556666666677777777765    467888899999999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012           79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS  158 (288)
Q Consensus        79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~  158 (288)
                      +++.+++++++|||+++++++|++++++|+.++..++.....         ++..  .....+..|+++++.++++||.+
T Consensus       103 i~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~---------~~~~--~~~~~~~~G~~~~l~aa~~~A~~  171 (295)
T PRK11689        103 SLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL---------AELI--NNIASNPLSYGLAFIGAFIWAAY  171 (295)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh---------hhhh--hccccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999866421100         0000  01112456999999999999999


Q ss_pred             HHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012          159 YCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV  237 (288)
Q Consensus       159 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~  237 (288)
                      .++.|+..++ .++....  ....+ +...+.....++. ...+...|..+++.++.+.++|.+|++++|+.++++++.+
T Consensus       172 ~v~~k~~~~~-~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~  247 (295)
T PRK11689        172 CNVTRKYARG-KNGITLF--FILTA-LALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATA  247 (295)
T ss_pred             HHHHhhccCC-CCchhHH--HHHHH-HHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999997654 4444332  22222 2222222222222 2346677888888886666999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      .+++|+++.+++++++||+++..+++|+++|+.|+.+...+++++
T Consensus       248 ~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~  292 (295)
T PRK11689        248 SYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK  292 (295)
T ss_pred             HHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence            999999999999999999999999999999999998776655443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=100.00  E-value=1.1e-30  Score=221.92  Aligned_cols=244  Identities=22%  Similarity=0.241  Sum_probs=201.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI   83 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l   83 (288)
                      ++.|+.+..+.|...+.+++.+..+++    .+++++.+....+++....++.++++|++++++++++++.++.|+++.+
T Consensus        14 ~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~   89 (260)
T TIGR00950        14 GQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTL   89 (260)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHH
Confidence            468999999999999988887765554    2333445566677777789999999999999999999999999999999


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012           84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK  163 (288)
Q Consensus        84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k  163 (288)
                      ++++++|||+++++++|+.++++|+.++..++.                     .+.+..|+.+++.++++|+.+.+..|
T Consensus        90 ~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~---------------------~~~~~~G~~~~l~a~~~~a~~~~~~k  148 (260)
T TIGR00950        90 LSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN---------------------LSINPAGLLLGLGSGISFALGTVLYK  148 (260)
T ss_pred             HHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc---------------------ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999865431                     12356899999999999999999999


Q ss_pred             hcccCCCCc-hhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhH
Q 023012          164 AGANASDQP-LVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIE  241 (288)
Q Consensus       164 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~  241 (288)
                      +..++.++. .....+....+.+...+.....++....+..+|..+++.++++. +++.+|++++++.++++++.+.+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~  228 (260)
T TIGR00950       149 RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAE  228 (260)
T ss_pred             HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            976433322 22333456666666665555444444446778888899998865 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCchhhHhHHHHHHHHH
Q 023012          242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSV  272 (288)
Q Consensus       242 pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~  272 (288)
                      |+++.+++++++||+++..+++|+.+++.|+
T Consensus       229 pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       229 PLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999885

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=1.2e-30  Score=225.71  Aligned_cols=252  Identities=16%  Similarity=0.188  Sum_probs=192.4

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHhh-cccchhHHHHhhhHHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFVYSIQR-LPLSQATVLSFTAPIM   80 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~-~~~~~~~~i~~~~P~~   80 (288)
                      .+++||.++.++|+.++.+.+.++..+++.      + ++.....++.. .....+++.+.++ .++++++++.+++|++
T Consensus        27 ~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~------~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~   99 (299)
T PRK11453         27 LHNMPPLMLAGLRFMLVAFPAIFFVARPKV------P-LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFF   99 (299)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHhcCCCC------c-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHH
Confidence            467999999999999987766554422111      1 22333444433 3455577889988 6889999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 023012           81 ASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYC  160 (288)
Q Consensus        81 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v  160 (288)
                      +.+++++++|||++++++++++++++|+.++..++.+.                   ...+..|+++++.++++|+.+.+
T Consensus       100 ~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-------------------~~~~~~G~~l~l~aal~~a~~~v  160 (299)
T PRK11453        100 TIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG-------------------QHVAMLGFMLTLAAAFSWACGNI  160 (299)
T ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC-------------------cchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887553211                   12345799999999999999999


Q ss_pred             HHHhcccCCCCch--hHHHHHHHHHHHhhhHHhHhcCc-------cccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccC
Q 023012          161 LIKAGANASDQPL--VTVFSFGILASPAAGICLFFFEE-------FVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEK  230 (288)
Q Consensus       161 ~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~  230 (288)
                      +.|+..++.+++.  ....+.+..+.+.........++       +...+...|..+++.+++++ ++|.+|++++++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~  240 (299)
T PRK11453        161 FNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE  240 (299)
T ss_pred             HHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999654332222  22333444433322222222221       12346788999999998876 99999999999999


Q ss_pred             CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      +.+++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+..+.++
T Consensus       241 a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        241 TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999987766554

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.97  E-value=3e-29  Score=216.32  Aligned_cols=250  Identities=14%  Similarity=0.049  Sum_probs=194.3

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI   83 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l   83 (288)
                      +++||.++.++|++++.+++.++.+++++ . .+++.++.....++.....+.+++++++++|++.++++.+++|+++.+
T Consensus        36 ~~~~~~~~~~~R~~~a~l~l~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~l  113 (293)
T PRK10532         36 PLVGAPGVTALRLALGTLILIAIFKPWRL-R-FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVAL  113 (293)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHhHHhc-c-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            46899999999999999888776544332 2 233445556677777788889999999999999999999999999998


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012           84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK  163 (288)
Q Consensus        84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k  163 (288)
                      ++    +||+++  ..++.++++|+.++..++.+.                   +..+..|+++++.++++|+.+.+..|
T Consensus       114 l~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~-------------------~~~~~~G~ll~l~aa~~~a~~~v~~r  168 (293)
T PRK10532        114 FS----SRRPVD--FVWVVLAVLGLWFLLPLGQDV-------------------SHVDLTGAALALGAGACWAIYILSGQ  168 (293)
T ss_pred             Hh----cCChHH--HHHHHHHHHHHheeeecCCCc-------------------ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            87    366554  455677899998887543211                   12345799999999999999999999


Q ss_pred             hcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHH
Q 023012          164 AGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEV  242 (288)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~p  242 (288)
                      +..++ .++.... +....+.+...+.....++....+...|..+++.|++++ ++|.+|++++++.++++++.+.++||
T Consensus       169 ~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~P  246 (293)
T PRK10532        169 RAGAE-HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEP  246 (293)
T ss_pred             HHhcc-CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHH
Confidence            97653 4455444 344555555444444333222345566777788998866 99999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      +++.+++++++||+++..+++|+.+|++|++...++.+|+
T Consensus       247 v~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~  286 (293)
T PRK10532        247 ALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE  286 (293)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999887765554

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.97  E-value=1.9e-29  Score=217.96  Aligned_cols=247  Identities=15%  Similarity=0.091  Sum_probs=183.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCC-C----CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQP-I----FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP   78 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P   78 (288)
                      +++||.++.++|+.++.+++.++...+++. .    .++++.+.....+++..+.++.++++|++++|+++++++.+++|
T Consensus        31 ~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P  110 (296)
T PRK15430         31 YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINP  110 (296)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            568999999999999988777665444321 1    11222223344667777889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012           79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS  158 (288)
Q Consensus        79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~  158 (288)
                      +++.+++++++|||+++++++|++++++|+.++..++.                      +..    +++++++++||.|
T Consensus       111 i~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~----------------------~~~----~~~l~aa~~~a~~  164 (296)
T PRK15430        111 LVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG----------------------SLP----IIALGLAFSFAFY  164 (296)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC----------------------Ccc----HHHHHHHHHHHHH
Confidence            99999999999999999999999999999998865421                      011    3578899999999


Q ss_pred             HHHHHhcccCCC-CchhHHHHHHHHHHHhhhHHhHhcCccc--cCch-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012          159 YCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEFV--LPSF-YSFLLMLVLSILAFFAEVLLARGLQLEKTSKV  234 (288)
Q Consensus       159 ~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~  234 (288)
                      .+..|+..++.. .......+....+......  ....+..  ..++ ..+..+...|+.+.+++.+|++++++.+++++
T Consensus       165 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~  242 (296)
T PRK15430        165 GLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA--IADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTL  242 (296)
T ss_pred             HHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH--HccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999643211 1122222333333222111  1111111  1122 23444555566666999999999999999999


Q ss_pred             eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +.+.+++|+++.+++++++||+|++.+++|+++|++|+.+...+
T Consensus       243 s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        243 GFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887776543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=1.5e-28  Score=213.09  Aligned_cols=258  Identities=13%  Similarity=0.027  Sum_probs=200.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012            6 IPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA   84 (288)
Q Consensus         6 ~~~~~~~~~R~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll   84 (288)
                      .+|..+++.|+.++.+...+.... .+++...++++++.+...|++...+..+.++++++++++.++++.++.|++++++
T Consensus        29 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll  108 (302)
T TIGR00817        29 PYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVL  108 (302)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHH
Confidence            579999999999988776555221 1222233455677788888888888899999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023012           85 ARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA  164 (288)
Q Consensus        85 ~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~  164 (288)
                      +++++|||+++++++++++++.|+.+....+                      .+.+..|++++++++++|+++.+..|+
T Consensus       109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------------------~~~~~~G~~~~l~a~~~~a~~~v~~k~  166 (302)
T TIGR00817       109 SAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------------------LSFNWAGFLSAMISNITFVSRNIFSKK  166 (302)
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------------------ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998753221                      123467999999999999999999999


Q ss_pred             cccC-CCCchhHHHHHHHHHHHhhhHHhHhcCccccCc--h----------HHHHHHHHHHHHHH-HHHHHHHHhhcccC
Q 023012          165 GANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVLPS--F----------YSFLLMLVLSILAF-FAEVLLARGLQLEK  230 (288)
Q Consensus       165 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~l~~~gi~~~-~~~~~~~~al~~~~  230 (288)
                      ..++ +.++.....++...+.+...+.....++.+...  .          ..+...+..+.... ..+.+++.++++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s  246 (302)
T TIGR00817       167 AMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVS  246 (302)
T ss_pred             hhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            6641 345677888888888877777665444322110  0          01111222222222 33356678999999


Q ss_pred             CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012          231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN  285 (288)
Q Consensus       231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~  285 (288)
                      +.+.+...+++|+++.+++++++||++|..+++|..++++|+.++.+.|+||+++
T Consensus       247 a~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       247 PLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             chHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            9999999999999999999999999999999999999999999988877666554

specificities overlap.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.96  E-value=2.5e-30  Score=208.09  Aligned_cols=267  Identities=22%  Similarity=0.355  Sum_probs=229.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHH
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASI   83 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~l   83 (288)
                      -+.+|.+..-.|++.-+++..+....+++....+++.++.++++|+.++.+....|||++|.+.+++++|.+++|.++.+
T Consensus        60 ~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~i  139 (346)
T KOG4510|consen   60 LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTII  139 (346)
T ss_pred             hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHH
Confidence            35799999999988887777776666666555666667788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012           84 AARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK  163 (288)
Q Consensus        84 l~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k  163 (288)
                      +++.++|||.++.+.++..+.+.||+++.+|..-.+.+++        ..++.....+..|.+.++.++++.|--+++.|
T Consensus       140 faw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~--------g~~~s~~~~~~~gt~aai~s~lf~asvyIilR  211 (346)
T KOG4510|consen  140 FAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTE--------GEDSSQVEYDIPGTVAAISSVLFGASVYIILR  211 (346)
T ss_pred             HHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcc--------ccccccccccCCchHHHHHhHhhhhhHHHHHH
Confidence            9999999999999999999999999999999865543221        11111235566778888999999999999999


Q ss_pred             hcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccC-chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012          164 AGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV  242 (288)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~p  242 (288)
                      ++.| +.+......++.+.+.+.+++.....+.+..| ...+|.....+|+++++++++...++++..+..++...+.+.
T Consensus       212 ~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dv  290 (346)
T KOG4510|consen  212 YIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDV  290 (346)
T ss_pred             Hhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHH
Confidence            9766 45566777788888888888877777777777 688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      +++.++++++|||.||++.|.|+++++.+.++...+|
T Consensus       291 vfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  291 VFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            9999999999999999999999999999988866543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.96  E-value=1.3e-26  Score=198.80  Aligned_cols=243  Identities=14%  Similarity=0.042  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--CCCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH
Q 023012           11 TVFMRCTVTLILSYLWLRRS--GQPIF-GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI   87 (288)
Q Consensus        11 ~~~~R~~~a~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~   87 (288)
                      ..+++.....+++.++...+  +++.. .+++++.....++.....+..++++|+++.++++++++.++.|+++.+++++
T Consensus        30 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~  109 (281)
T TIGR03340        30 FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATL  109 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHH
Confidence            34777777777777665543  22222 2345555677788888899999999999999999999999999999999999


Q ss_pred             HhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 023012           88 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN  167 (288)
Q Consensus        88 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~  167 (288)
                      ++|||+++++++|+.+++.|+.++..++.+                     ..+..|+.+++.++++|+.|.+..|+..+
T Consensus       110 ~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---------------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~  168 (281)
T TIGR03340       110 TLGETLSPLAWLGILIITLGLLVLGLSRFA---------------------QHRRKAYAWALAAALGTAIYSLSDKAAAL  168 (281)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccccc---------------------ccchhHHHHHHHHHHHHHHhhhhcccccc
Confidence            999999999999999999999988654311                     12235777899999999999999998543


Q ss_pred             CCCCchhHH---HHHHHHHHHhhhHHhHhcCccc-cCchHHHHHHHHHHHH-HHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012          168 ASDQPLVTV---FSFGILASPAAGICLFFFEEFV-LPSFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEV  242 (288)
Q Consensus       168 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~-~~~~~~~~~~al~~~~~~~~~~~~~~~p  242 (288)
                      +.++.....   .+................++.. .+....+..+.+.+.+ +.++|.+|++++++.++++++.+.+++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~p  248 (281)
T TIGR03340       169 GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSI  248 (281)
T ss_pred             chhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHH
Confidence            222211111   1111111111111111111111 1223334444555544 5699999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012          243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  274 (288)
Q Consensus       243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~  274 (288)
                      +++.+++++++||+++..+++|+.+++.|+.+
T Consensus       249 v~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       249 VFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=1.2e-25  Score=197.92  Aligned_cols=253  Identities=12%  Similarity=0.105  Sum_probs=195.4

Q ss_pred             CCCC-hHHHHHHHHHHHHHHHHHHHHHh--CCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            4 QSIP-LFETVFMRCTVTLILSYLWLRRS--GQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         4 ~~~~-~~~~~~~R~~~a~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      +++| |+.++.+|++++.++...+...+  +++... +++.++.++..|+++.......+.|+++++++.+.++..+.|+
T Consensus        73 ~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pv  152 (350)
T PTZ00343         73 NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPV  152 (350)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence            4578 99999999999987655443221  112122 3345667888888888777777899999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 023012           80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY  159 (288)
Q Consensus        80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~  159 (288)
                      ++++++++++|||++++++.++++++.|+.+....+.                      ..++.|+++++++++++++++
T Consensus       153 ft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----------------------~~~~~G~~~~l~s~~~~a~~~  210 (350)
T PTZ00343        153 FTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL----------------------HFTWLAFWCAMLSNLGSSLRS  210 (350)
T ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc----------------------hhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999874331                      235789999999999999999


Q ss_pred             HHHHhcccCCC------CchhHHHHHHHHHHHhhhHHhHhcCccc--c--------CchHHHHHHHHHHHHHHHHHHHHH
Q 023012          160 CLIKAGANASD------QPLVTVFSFGILASPAAGICLFFFEEFV--L--------PSFYSFLLMLVLSILAFFAEVLLA  223 (288)
Q Consensus       160 v~~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~l~~~gi~~~~~~~~~~  223 (288)
                      ++.|+..++.+      ++.....+....+.++.++.....+...  .        .+...+..+.+..+.+.+.+.+++
T Consensus       211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n  290 (350)
T PTZ00343        211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYN  290 (350)
T ss_pred             HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence            99999765432      2333344446677777766655443211  0        011112233333444568888887


Q ss_pred             H----hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          224 R----GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       224 ~----al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      .    ++++.++.+.+...+++|+++++.+++++||++|+.+++|+++++.|+.++.+.
T Consensus       291 ~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        291 EVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            4    999999999999999999999999999999999999999999999999988765

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=3.1e-25  Score=187.93  Aligned_cols=220  Identities=14%  Similarity=0.075  Sum_probs=164.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCC------C--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQP------I--FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF   75 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~   75 (288)
                      +++||.++.++|+.++.+++.++...++++      .  .++++++.....++++...++.++++|++++++++++++.+
T Consensus        25 ~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~  104 (256)
T TIGR00688        25 KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYL  104 (256)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence            469999999999999988877655333221      1  11222334567788888899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 023012           76 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITG  155 (288)
Q Consensus        76 ~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~  155 (288)
                      ++|+++++++++++|||+++++++++.++++|+.++..++.                      +..    .+++.++++|
T Consensus       105 ~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----------------------~~~----~~~l~aa~~~  158 (256)
T TIGR00688       105 INPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG----------------------SLP----WEALVLAFSF  158 (256)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC----------------------Cch----HHHHHHHHHH
Confidence            99999999999999999999999999999999988765421                      011    3568899999


Q ss_pred             HHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--cc-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 023012          156 GISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VL-PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS  232 (288)
Q Consensus       156 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~  232 (288)
                      +.+.+..|+..+ .++ ...... .....+.........+..  .. +...+|..++..|+.+.++|.++.+++|+.+++
T Consensus       159 a~~~i~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~  235 (256)
T TIGR00688       159 TAYGLIRKALKN-TDL-AGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLN  235 (256)
T ss_pred             HHHHHHHhhcCC-CCc-chHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence            999999999643 332 222221 122222222221111111  11 223488888888988779999999999999999


Q ss_pred             ceeehhhhHHHHHHHHHHHh
Q 023012          233 KVANVQYIEVALTQLWGMGL  252 (288)
Q Consensus       233 ~~~~~~~~~pv~~~l~~~~~  252 (288)
                      +++.+.+++|+++.+++++.
T Consensus       236 ~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       236 LLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.94  E-value=6.5e-24  Score=182.74  Aligned_cols=250  Identities=22%  Similarity=0.222  Sum_probs=197.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012            6 IPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA   84 (288)
Q Consensus         6 ~~~~~~~~~R~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll   84 (288)
                      .++....+.|...+.+...+...+++. .....++.++....+++....++.+++.+.++++++.++++.++.|+++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~  113 (292)
T COG0697          34 DPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALL  113 (292)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            566777778999888884444443321 2222222346677888888899999999999999999999999999999999


Q ss_pred             HH-HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 023012           85 AR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIK  163 (288)
Q Consensus        85 ~~-~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k  163 (288)
                      ++ +++|||++++++.++.+++.|+.++..++..+.                  .. ...|+++++.++++++.+.+..|
T Consensus       114 ~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~------------------~~-~~~g~~~~l~a~~~~a~~~~~~~  174 (292)
T COG0697         114 AVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG------------------IL-SLLGLLLALAAALLWALYTALVK  174 (292)
T ss_pred             HHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch------------------hH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            97 667999999999999999999999998874321                  01 67999999999999999999999


Q ss_pred             hcccCCCCchhHHH-HHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhh
Q 023012          164 AGANASDQPLVTVF-SFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYI  240 (288)
Q Consensus       164 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~  240 (288)
                      +..  +.++..... +...........  ....+. .+.+...|..+.+.|+.+. +++.++++++++.++.+++.+.++
T Consensus       175 ~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T COG0697         175 RLS--RLGPVTLALLLQLLLALLLLLL--FFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLL  250 (292)
T ss_pred             Hhc--CCChHHHHHHHHHHHHHHHHHH--HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            865  333444443 333312212111  111222 2346788999999998877 899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          241 EVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       241 ~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +|+++.++++++++|+++..+++|+.+++.|+.+...+
T Consensus       251 ~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         251 EPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999987776

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.93  E-value=2.1e-23  Score=179.65  Aligned_cols=261  Identities=16%  Similarity=0.153  Sum_probs=200.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH
Q 023012            5 SIPLFETVFMRCTVTLILSYLWLRRSGQPI---FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA   81 (288)
Q Consensus         5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~   81 (288)
                      +.|..|..+...+...+..-....+++++.   ..++++|+ -++.+++-..++.+...|++|++.+.++++..+.-+++
T Consensus        41 ~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~-y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~  119 (334)
T PF06027_consen   41 NIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWK-YFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFV  119 (334)
T ss_pred             cCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHH-HHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHH
Confidence            345566555544444433322333333221   12344444 44557888999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023012           82 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL  161 (288)
Q Consensus        82 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~  161 (288)
                      ++++++++|||.++.|++|+.+++.|+.++...|.....             ++..+++...|+++++.++++||+++++
T Consensus       120 ~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~-------------~~~~~~~~i~GDll~l~~a~lya~~nV~  186 (334)
T PF06027_consen  120 MILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS-------------DSSSGSNPILGDLLALLGAILYAVSNVL  186 (334)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc-------------cCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887754311             1123467889999999999999999999


Q ss_pred             HHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc--cc--cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012          162 IKAGANASDQPLVTVFSFGILASPAAGICLFFFEE--FV--LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV  237 (288)
Q Consensus       162 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~  237 (288)
                      .++..++ .+........++.+.+++.+.....+.  ..  ..+...+..++..++..+.-|.+....++..+|+..+.-
T Consensus       187 ~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLs  265 (334)
T PF06027_consen  187 EEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLS  265 (334)
T ss_pred             HHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehH
Confidence            9998764 456667777778888777765544331  11  123444555555556666888888999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      ..+..+++.+++++++|+++++..++|.++|+.|.++++..++
T Consensus       266 LLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  266 LLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            9999999999999999999999999999999999998876543

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.91  E-value=3e-22  Score=160.59  Aligned_cols=253  Identities=14%  Similarity=0.064  Sum_probs=204.5

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMAS   82 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~   82 (288)
                      .+.++|...+.+|..++.++++.+.+..+++  ..++++..+..-|......|.+||.+++.+|.+.+..+.++-|+...
T Consensus        35 FP~vG~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA  112 (292)
T COG5006          35 FPLVGAAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVA  112 (292)
T ss_pred             ccccChhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHH
Confidence            3567888999999999999988877644432  33456778888999999999999999999999999999999999988


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 023012           83 IAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI  162 (288)
Q Consensus        83 ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~  162 (288)
                      +++.      -+.+..+.+.+++.|..++...+..                   ....+..|..+++.++.||+.|.+..
T Consensus       113 ~~~s------Rr~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006         113 LLSS------RRLRDFVWVALAVLGIWLLLPLGQS-------------------VWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HHhc------cchhhHHHHHHHHHHHHhheeccCC-------------------cCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            7763      2445666677788888777544311                   13467899999999999999999999


Q ss_pred             HhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhH
Q 023012          163 KAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIE  241 (288)
Q Consensus       163 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~  241 (288)
                      ||..+ .++....+..-+..+.++.+++..........++.....-+..++++. +.|.+-..++++.+....+.+.++|
T Consensus       168 ~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLe  246 (292)
T COG5006         168 QRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLE  246 (292)
T ss_pred             chhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhh
Confidence            99764 455555666666777777666666444444457788888888999977 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012          242 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE  283 (288)
Q Consensus       242 pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~  283 (288)
                      |.++.+.+++++||.+|..||.|+..|+++..-..+..||+.
T Consensus       247 Pa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~  288 (292)
T COG5006         247 PALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA  288 (292)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence            999999999999999999999999999999886665544443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=161.00  Aligned_cols=248  Identities=20%  Similarity=0.185  Sum_probs=200.8

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhh
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTA   77 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~   77 (288)
                      .++.|+.|+...|...+.+++.......|+.     ..++++......+.+.....++..|.+|.++-..-+++.-++.+
T Consensus        29 l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~In  108 (293)
T COG2962          29 LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFIN  108 (293)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHH
Confidence            5789999999999999988776654433321     23344445567788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 023012           78 PIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGI  157 (288)
Q Consensus        78 P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~  157 (288)
                      |++.++++++++|||+|+.|++++.++.+||........                      .-.+..    +.=+++|+.
T Consensus       109 PL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g----------------------~lpwva----l~la~sf~~  162 (293)
T COG2962         109 PLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG----------------------SLPWVA----LALALSFGL  162 (293)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC----------------------CCcHHH----HHHHHHHHH
Confidence            999999999999999999999999999999988766542                      224444    445668999


Q ss_pred             HHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccc---c-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 023012          158 SYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV---L-PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSK  233 (288)
Q Consensus       158 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~  233 (288)
                      |....|+..   .++.+-...-...-.+..+......++..   . .+...+..+...|..+.++..++..+-|+.+-+.
T Consensus       163 Ygl~RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~  239 (293)
T COG2962         163 YGLLRKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLST  239 (293)
T ss_pred             HHHHHHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHH
Confidence            999988842   33444444455555555555555443332   1 3677888899999999999999999999999999


Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      .+.++|.+|....+++++++||+++..+.+..+.|..|..+.....
T Consensus       240 ~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~  285 (293)
T COG2962         240 LGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG  285 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.89  E-value=6.8e-21  Score=163.72  Aligned_cols=250  Identities=14%  Similarity=0.051  Sum_probs=185.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHH
Q 023012            5 SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASI   83 (288)
Q Consensus         5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~l   83 (288)
                      +.++.++.  |..++.+++..+....+.+.+..++....-.+.|.....++.+++.|+++++.+.+..+.+ +.|++..+
T Consensus        25 g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l  102 (290)
T TIGR00776        25 GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTL  102 (290)
T ss_pred             CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence            46666665  7777777665554433332222244444566777778889999999999999999999988 88899999


Q ss_pred             HHHHHhcccchHHH----HHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 023012           84 AARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY  159 (288)
Q Consensus        84 l~~~~l~e~~~~~~----~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~  159 (288)
                      .+.+++|||.++++    .+|+++++.|+.++...+.++.            ..++  ..+...|+.++++++++|+.+.
T Consensus       103 ~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~------------~~~~--~~~~~~Gi~~~l~sg~~y~~~~  168 (290)
T TIGR00776       103 FGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA------------GIKS--EFNFKKGILLLLMSTIGYLVYV  168 (290)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc------------cccc--ccchhhHHHHHHHHHHHHHHHH
Confidence            99999999999999    9999999999998865542210            0000  0123679999999999999999


Q ss_pred             HHHHhcccCCCCchhHHHHHHH----HHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCcce
Q 023012          160 CLIKAGANASDQPLVTVFSFGI----LASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQ-LEKTSKV  234 (288)
Q Consensus       160 v~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~-~~~~~~~  234 (288)
                      +..|+..   .++....+.+..    .+.+.....   ..+ .+...+.+...+..|++..+++.+|..+.+ +.++++.
T Consensus       169 ~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~  241 (290)
T TIGR00776       169 VVAKAFG---VDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATS  241 (290)
T ss_pred             HHHHHcC---CCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhH
Confidence            9999852   345555333333    232222211   011 112333433344488887799999999999 9999999


Q ss_pred             eehhhhHHHHHHHHHHHhhccCCchhhH----hHHHHHHHHHHHHHH
Q 023012          235 ANVQYIEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMY  277 (288)
Q Consensus       235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~  277 (288)
                      +.+.+.+|+.+.+++++++||+.+..|+    +|+++++.|+.+...
T Consensus       242 ~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       242 FSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999    999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.87  E-value=1.8e-19  Score=156.19  Aligned_cols=264  Identities=16%  Similarity=0.150  Sum_probs=213.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR   86 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~   86 (288)
                      .|..+++..+....+...+.....+++.. ++...+.....++....+..+-..|++++|.+.-.++.+..|+.+++++.
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~  109 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKS-RKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGV  109 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCC-CcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHH
Confidence            37788889888888777766555442222 33334566777888899999999999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012           87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA  166 (288)
Q Consensus        87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~  166 (288)
                      +++|+|.+++|++++++..+|+.+....+....+            +.+........|+.+.+++.++.+...+..++..
T Consensus       110 l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~------------~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~  177 (303)
T PF08449_consen  110 LILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS------------SSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLF  177 (303)
T ss_pred             HhcCccccHHHHHHHHHHHhhHheeeeccccccc------------ccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998776643211            1111122233499999999999999999998866


Q ss_pred             c-CCCCchhHHHHHHHHHHHhhhHHhHh--cCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeeh
Q 023012          167 N-ASDQPLVTVFSFGILASPAAGICLFF--FEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANV  237 (288)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~  237 (288)
                      + .+.++...+++....+.+........  .++...      ..+..+..++...+.+.++..+.+...++.++...+.+
T Consensus       178 ~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v  257 (303)
T PF08449_consen  178 KKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIV  257 (303)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH
Confidence            4 44566788888888888888776665  333222      24556777778888888888888999999999999999


Q ss_pred             hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012          238 QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE  283 (288)
Q Consensus       238 ~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~  283 (288)
                      ..+.-+++.+++++++++++++.+|+|..+++.|..+..+.++||+
T Consensus       258 ~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  258 TTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999999888877764

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.83  E-value=1.6e-19  Score=152.61  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=187.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccc
Q 023012           39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT  118 (288)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~  118 (288)
                      +..+..+..+..-+.++..+..|+.+++++..+++.+++-+|+..++.++..||+++.|.+++++++.|++++...+.+.
T Consensus       157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            33445666677778999999999999999999999999999999999999999999999999999999999998776432


Q ss_pred             cccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHh---H---
Q 023012          119 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL---F---  192 (288)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---  192 (288)
                                    .++........|.++++++++.||.|.++.|+...+++....+..+++..|..-.+...   +   
T Consensus       237 --------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~  302 (416)
T KOG2765|consen  237 --------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD  302 (416)
T ss_pred             --------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                          11234456789999999999999999999998655443344444444555543332222   1   


Q ss_pred             --hcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHH
Q 023012          193 --FFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLIL  269 (288)
Q Consensus       193 --~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~  269 (288)
                        ..+.+..|+......++..++++. ++-.+|.+|+-..++..+.+-+.++++.+++.+.++-+..+++.+++|.+.|.
T Consensus       303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~If  382 (416)
T KOG2765|consen  303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIF  382 (416)
T ss_pred             HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence              124566788888888888887755 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 023012          270 VSVFYTMYIGP  280 (288)
Q Consensus       270 ~g~~~~~~~~~  280 (288)
                      +|-++.+...+
T Consensus       383 v~Fv~vn~~~~  393 (416)
T KOG2765|consen  383 VGFVIVNISSE  393 (416)
T ss_pred             HHHhheecccc
Confidence            99999887644

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.70  E-value=1.3e-16  Score=136.00  Aligned_cols=257  Identities=14%  Similarity=0.079  Sum_probs=202.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQP--IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA   84 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll   84 (288)
                      -|..++..+...+.+.....-..+-.+  ...++..++.++..++...++..+-..|+.+.+++-+..+..++|++++++
T Consensus        47 ~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~  126 (316)
T KOG1441|consen   47 FPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLL  126 (316)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHH
Confidence            356666776666666555443333222  222445677888999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023012           85 ARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA  164 (288)
Q Consensus        85 ~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~  164 (288)
                      ++++.+|+.+.+.+..+.....|+.+....+.                      ..++.|.+.+.++.+..+..+++.|+
T Consensus       127 ~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~fn~~G~i~a~~s~~~~al~~I~~~~  184 (316)
T KOG1441|consen  127 SVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------SFNLFGFISAMISNLAFALRNILSKK  184 (316)
T ss_pred             HHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999877553                      35889999999999999999999999


Q ss_pred             ccc---CCCCchhHHHHHHHHHHHhhh-HHhHhcCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012          165 GAN---ASDQPLVTVFSFGILASPAAG-ICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKV  234 (288)
Q Consensus       165 ~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~  234 (288)
                      ..+   .+.++.....+..-.+...++ +.....++...      +.......+....++...-+...+..+.+.+|...
T Consensus       185 ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~  264 (316)
T KOG1441|consen  185 LLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTY  264 (316)
T ss_pred             hhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhh
Confidence            773   345677777776666666665 43333222111      11112333334446667778888999999999999


Q ss_pred             eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012          235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN  285 (288)
Q Consensus       235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~  285 (288)
                      ++.+...-.+.++.++++++|+.|+.+..|+.+.++|+.++.+.+.+++++
T Consensus       265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            999999999999999999999999999999999999999999988776654

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.69  E-value=4e-16  Score=112.57  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccC---chHHHHHHHHHHHHHHHHHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEV  220 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~  220 (288)
                      ...+++++++++++..+..|-..++.| |...+.........++.......+++..+   +++.|..+...|+.+..++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            357889999999999999999776544 65666677777777777777888888877   89999999999988999999


Q ss_pred             HHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          221 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       221 ~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      +|++|+|..+++++.++..+.|+++.+++++++||++|..+++|+.+|++|.+++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999999999999999987654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.65  E-value=1.4e-14  Score=120.95  Aligned_cols=220  Identities=15%  Similarity=0.177  Sum_probs=163.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccc
Q 023012           39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT  118 (288)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~  118 (288)
                      +......+.+++..+.+.+.+.++++++++.-.++..+..+++++++++++|+|++++||.++.+.+.|+.++-..+...
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999986665432


Q ss_pred             cccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-hhHHHHHHHHHHHhhhHHhHhcCcc
Q 023012          119 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP-LVTVFSFGILASPAAGICLFFFEEF  197 (288)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (288)
                      ...     +++++.+++....+...|.++.+.++++.++..++..+..|+.+.+ ..........+.++.+...... ++
T Consensus        95 ~~~-----~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~  168 (244)
T PF04142_consen   95 SDN-----SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DG  168 (244)
T ss_pred             ccc-----ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence            110     0001111111234568999999999999999999998877755433 3334444566666655543322 22


Q ss_pred             ccC---------chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHH
Q 023012          198 VLP---------SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI  268 (288)
Q Consensus       198 ~~~---------~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li  268 (288)
                      ..+         +...|..++    ....+-++....+|+.+.-.=+.......+++.+.++++++.+++....+|+.++
T Consensus       169 ~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  169 SAISESGFFHGYSWWVWIVIF----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cccccCCchhhcchHHHHHHH----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            211         222222222    2335556667778999999889999999999999999999999999999998653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=6.4e-15  Score=106.36  Aligned_cols=110  Identities=21%  Similarity=0.277  Sum_probs=100.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      .+++||..-++.|..+...++..+....++....   .++.+.++.+.|+.+..++.+||+|++..+++.+..+..++|+
T Consensus        26 l~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svv  105 (140)
T COG2510          26 LEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVV  105 (140)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHH
Confidence            5789999999999999998888887777765444   5666788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           80 MASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      ++++++++++|||+|.++|+|+.+..+|++++.
T Consensus       106 l~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510         106 LAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999998875

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.58  E-value=8e-13  Score=109.50  Aligned_cols=259  Identities=11%  Similarity=0.072  Sum_probs=209.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR   86 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~   86 (288)
                      ++..+.+.+-+.+.+....++..++.+. ..++.++.....++...++..|-+.|++|++-..-.+-.+.--+-+++++.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~-~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~  128 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKEL-SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT  128 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccC-CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence            5667778888888888777766655543 333445567778889999999999999999999999999988888999999


Q ss_pred             HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012           87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA  166 (288)
Q Consensus        87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~  166 (288)
                      ++.|+|.+.++.+...+.-.|+.+....+..+             ...+.....++.|+.+....-..-++.+..+.++.
T Consensus       129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~-------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf  195 (327)
T KOG1581|consen  129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD-------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF  195 (327)
T ss_pred             HHhcCccCcHHHHHHHHHHhheeeEEEecCCC-------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence            99999999999999999999997765443211             01122235688999999999998888888887755


Q ss_pred             c-CCCCchhHHHHHHHHHHHhhhHHhHhcCcccc------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh
Q 023012          167 N-ASDQPLVTVFSFGILASPAAGICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY  239 (288)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~  239 (288)
                      + -+.++...+++..+.+.+......+..+++..      ..++.+.-++.+..++.+++.+.+.-+++-++.+...++.
T Consensus       196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence            5 34677888888888888888776554433322      2577888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          240 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       240 ~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      +.-++++.++.+.++.+.+..||.|..++..|+.+-...+
T Consensus       276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k  315 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLK  315 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHH
Confidence            9999999999999999999999999999999988765443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.57  E-value=3.6e-13  Score=107.50  Aligned_cols=222  Identities=13%  Similarity=0.105  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012           42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  121 (288)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~  121 (288)
                      +.-...++......+.-..|+|++|-....+-.+.-|+-+++++.++.+++-+|++...+.++++|+++.+..+.+-.  
T Consensus        86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~--  163 (337)
T KOG1580|consen   86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG--  163 (337)
T ss_pred             hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC--
Confidence            445566666777778888999999999999999999999999999999999999999999999999999877643221  


Q ss_pred             CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc-
Q 023012          122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEE-FV-  198 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  198 (288)
                                   +........|.++.++|--.-+.....+.+..+ .......++++..+-+.+.+....++.++ |. 
T Consensus       164 -------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF  230 (337)
T KOG1580|consen  164 -------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF  230 (337)
T ss_pred             -------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH
Confidence                         112345678999999998888777777766433 22344566777777776666555554432 22 


Q ss_pred             ----cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012          199 ----LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  274 (288)
Q Consensus       199 ----~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~  274 (288)
                          ...+..|.-+..+++.+.+++++.+.-...-+|..-+.+..+.-.|+++.++++++.+++.+||+|..++..+...
T Consensus       231 ~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  231 FYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence                3357788888899999999999999999999999999999999999999999999999999999999999998665


Q ss_pred             HHHh
Q 023012          275 TMYI  278 (288)
Q Consensus       275 ~~~~  278 (288)
                      =...
T Consensus       311 D~~~  314 (337)
T KOG1580|consen  311 DVVD  314 (337)
T ss_pred             Hhhc
Confidence            4433

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=5.2e-12  Score=105.94  Aligned_cols=249  Identities=14%  Similarity=0.100  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHHHh--CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcc
Q 023012           14 MRCTVTLILSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILRE   91 (288)
Q Consensus        14 ~R~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e   91 (288)
                      .+.+...+.+...-+.+  +.+... ++..+.+....+........--++++++++...+++-+..|+++++...+++|.
T Consensus        49 ~Q~l~s~~~v~~lk~~~lv~~~~l~-~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~  127 (314)
T KOG1444|consen   49 LQSLASVLVVLVLKRLGLVNFRPLD-LRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGK  127 (314)
T ss_pred             HHHHHHHHHHHHHHHhceeecCCcC-hHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCc
Confidence            56655554444322222  122222 333455666677767777777889999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCC
Q 023012           92 KLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASD  170 (288)
Q Consensus        92 ~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~  170 (288)
                      |++.+.|.++....+|......++..                      .+..|+.+++...++-+.+.+..|+..+ .+-
T Consensus       128 ~~~~~v~~Sv~~m~~~s~~~~~~d~s----------------------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l  185 (314)
T KOG1444|consen  128 RPSNKVWASVFAMIIGSVAAAFTDLS----------------------FNLRGYSWALANCLTTAAFVVYVKKSVDSANL  185 (314)
T ss_pred             CchhhHHHHHHHHHHHHHhhccccce----------------------ecchhHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999887766643                      2345999999999999999999998554 333


Q ss_pred             CchhHHHHHHHHHHHhhhHHhHhcCccc--------cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHH
Q 023012          171 QPLVTVFSFGILASPAAGICLFFFEEFV--------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV  242 (288)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~p  242 (288)
                      +....+++..+.+.+.........++++        .++...+..+...+++++.-..+-.++.+..++...+++...+.
T Consensus       186 ~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~  265 (314)
T KOG1444|consen  186 NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNK  265 (314)
T ss_pred             cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhh
Confidence            4566788888989888888877777654        22355677888888999977788889999999999999998889


Q ss_pred             HHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCccccc
Q 023012          243 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN  285 (288)
Q Consensus       243 v~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~  285 (288)
                      ..+.+...++.+++.++...+|..+-++|.+++.+.+.+|++.
T Consensus       266 l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  266 LLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             HHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            9999999999999999999999999999999998876555443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.51  E-value=1.3e-11  Score=102.83  Aligned_cols=217  Identities=12%  Similarity=0.067  Sum_probs=161.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHH----HHHHHHHhhhheec
Q 023012           39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIG----GLALSFFGVLFIFR  113 (288)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~----g~~l~~~Gv~l~~~  113 (288)
                      +.+..-++.|++-.+++...+.++++.+.+.+.++.. +.-+.+.+++.++++|.-+..+++    ++++.++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            4556678889999999999999999999999999976 555558899999999998877665    78888889988776


Q ss_pred             ccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHh
Q 023012          114 RILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF  193 (288)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (288)
                      .+.++..              ..+..+...|+...+++.+.|..|....|..   +.++....+-+ ..+.++...+...
T Consensus       123 ~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~  184 (269)
T PF06800_consen  123 QDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNL  184 (269)
T ss_pred             ccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhh
Confidence            6533211              1123456679999999999999999998873   23455555544 4444444433332


Q ss_pred             cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchh----hHhHHHHHH
Q 023012          194 FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFG----RLVGCVLIL  269 (288)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~----~~~G~~li~  269 (288)
                      .. .+....+....-...|++-.++..++..+.++.+.+..=.++.+.++++.+.+.+++||+=+.+    .++|.++++
T Consensus       185 ~~-~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv  263 (269)
T PF06800_consen  185 FS-KKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIV  263 (269)
T ss_pred             cc-cccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHH
Confidence            22 2222222223334667777789999999999999999999999999999999999999987755    467888888


Q ss_pred             HHHHH
Q 023012          270 VSVFY  274 (288)
Q Consensus       270 ~g~~~  274 (288)
                      .|.++
T Consensus       264 ~G~il  268 (269)
T PF06800_consen  264 IGAIL  268 (269)
T ss_pred             Hhhhc
Confidence            87654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.5e-11  Score=102.49  Aligned_cols=225  Identities=15%  Similarity=0.151  Sum_probs=167.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012           42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  121 (288)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~  121 (288)
                      ..+.+.++...+.+.++|.++.+++++...+.+.+.-+.|+++.++++++|++++||.++++.+.|+.++-.+.....+ 
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~-  171 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG-  171 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC-
Confidence            3466777888899999999999999999999999999999999999999999999999999999999998633322111 


Q ss_pred             CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHHHHhhhHHhHhcCcccc-
Q 023012          122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLV-TVFSFGILASPAAGICLFFFEEFVL-  199 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  199 (288)
                                .++.......+.|....+.++..-++..++..+..|+.+.+.. -......+|.++.+......+.... 
T Consensus       172 ----------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~  241 (345)
T KOG2234|consen  172 ----------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN  241 (345)
T ss_pred             ----------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence                      1112234567899999999999999999999998875543433 3333455555555544433321111 


Q ss_pred             -------CchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHH
Q 023012          200 -------PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV  272 (288)
Q Consensus       200 -------~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~  272 (288)
                             .+...|..++..++    +-.+...-+|+.+--.=+....+..+++.+.++.+++-+||....+|..+++.++
T Consensus       242 ~~gff~G~s~~vw~vVl~~a~----gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si  317 (345)
T KOG2234|consen  242 EYGFFYGYSSIVWLVVLLNAV----GGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI  317 (345)
T ss_pred             cCCccccccHHHHHHHHHHhc----cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence                   13444444444444    3344445567777777777777899999999999999999999999999999999


Q ss_pred             HHHHHhCCc
Q 023012          273 FYTMYIGPE  281 (288)
Q Consensus       273 ~~~~~~~~~  281 (288)
                      .++...+.+
T Consensus       318 ~lY~~~P~~  326 (345)
T KOG2234|consen  318 FLYSLYPAR  326 (345)
T ss_pred             HHhhcCCcc
Confidence            988855543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.45  E-value=3.8e-13  Score=100.94  Aligned_cols=122  Identities=22%  Similarity=0.242  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc--ccCchHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 023012          153 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VLPSFYSFLLMLVLSILA-FFAEVLLARGLQLE  229 (288)
Q Consensus       153 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~-~~~~~~~~~al~~~  229 (288)
                      ++||.+.+..|+..++ .++.....++...+.+ ........+..  ..++..++......++++ .+++.++++++++.
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4688999999997764 6788888888888886 55544444433  456788888888899885 69999999999999


Q ss_pred             CCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          230 KTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       230 ~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      ++++++.+.+++|+++.+++++++||+++..+++|+++++.|+.+..
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.40  E-value=2.6e-12  Score=96.34  Aligned_cols=109  Identities=23%  Similarity=0.343  Sum_probs=87.4

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHh-C-C-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            3 VQSIPLFETVFMRCTVTLILSYLWLRRS-G-Q-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         3 ~~~~~~~~~~~~R~~~a~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      .++.||.+..++|+..+.+ +.+..... + + +..++++.......+.+....+..++++++++++++.++++.++.|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv   92 (126)
T PF00892_consen   14 LKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPV   92 (126)
T ss_pred             hccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4569999999999999987 44433322 2 2 23333343444445455568999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           80 MASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      ++.+++++++|||+++++++|+.+++.|+.++.
T Consensus        93 ~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   93 FAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.39  E-value=4.1e-12  Score=93.77  Aligned_cols=104  Identities=19%  Similarity=0.292  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCC----CCCchhHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH
Q 023012           13 FMRCTVTLILSYLWLRRSGQPI----FGPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI   87 (288)
Q Consensus        13 ~~R~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~   87 (288)
                      .+|+..+.+++..+...+++..    ..+++.+......++.. ..++.++++|.++.| +.+.++.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5799999988877766544321    11122233455555555 488999999999999 58899999999999999999


Q ss_pred             HhcccchHHHHHHHHHHHHhhhheeccccc
Q 023012           88 ILREKLKIAEIGGLALSFFGVLFIFRRILT  117 (288)
Q Consensus        88 ~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~  117 (288)
                      ++|||+++++++++.++++|++++..++.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999887743

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.34  E-value=1.5e-10  Score=96.21  Aligned_cols=246  Identities=15%  Similarity=0.106  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH
Q 023012            8 LFETVFMRCTVTLILSYLWLRRSGQ------PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA   81 (288)
Q Consensus         8 ~~~~~~~R~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~   81 (288)
                      |..++....++-+++.....+.++.      ....+++..+.+...++.....-.+-..++++++.+..++..+..++|+
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI  124 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI  124 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence            4555556665555554444332221      1233445556677888888888888899999999999999999999999


Q ss_pred             HHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023012           82 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL  161 (288)
Q Consensus        82 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~  161 (288)
                      .+++.++-=||.++.-..-+.+..+|+.+....+.+                      -+..|..+...++++-++....
T Consensus       125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq----------------------f~i~Gf~lv~~aS~~sGlRW~~  182 (349)
T KOG1443|consen  125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ----------------------FNIEGFFLVLAASLLSGLRWAF  182 (349)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc----------------------eeehhHHHHHHHHHhhhhhHHH
Confidence            999988777999999999999999999999877643                      3557777777777776666555


Q ss_pred             HHhcccC----CCCchhHHHHHHHHHHHhhhHHhHhcCcccc---------Cch----HHHHHHHHHHHHHHHHHHHHHH
Q 023012          162 IKAGANA----SDQPLVTVFSFGILASPAAGICLFFFEEFVL---------PSF----YSFLLMLVLSILAFFAEVLLAR  224 (288)
Q Consensus       162 ~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~l~~~gi~~~~~~~~~~~  224 (288)
                      .+++.++    ..+|..+.....-......++..+..++...         .+.    .....+...|..+++--..-+.
T Consensus       183 tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEfl  262 (349)
T KOG1443|consen  183 TQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFL  262 (349)
T ss_pred             HHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5554432    3456666666555555555555554443221         122    1223344444555544455556


Q ss_pred             hhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHH
Q 023012          225 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT  275 (288)
Q Consensus       225 al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~  275 (288)
                      -+.+++....+...-..-+.+.+++....+|.++...|.|..+...|+.+.
T Consensus       263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            678889999999999999999999999999999999999999999999887

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.34  E-value=1.5e-11  Score=97.49  Aligned_cols=223  Identities=12%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCC
Q 023012           45 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGG  124 (288)
Q Consensus        45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~  124 (288)
                      ....+......+.--.++||++....++..++..+.++.....++|.|++..+..+..+.+..-..-.+.|.+...    
T Consensus        72 fpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~----  147 (309)
T COG5070          72 FPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA----  147 (309)
T ss_pred             cCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH----
Confidence            3344444444444557899999999999999999999999999999999999999999988888777777643211    


Q ss_pred             CCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCccccC---
Q 023012          125 LVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---  200 (288)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  200 (288)
                                 .....-..|++++...++.-+.+....|+..+ .+-....++++..+.+.++.....+..++|.+.   
T Consensus       148 -----------~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~a  216 (309)
T COG5070         148 -----------FKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLA  216 (309)
T ss_pred             -----------HHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhh
Confidence                       00112346889999999999999988887554 233446689999999999999999988888764   


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          201 ---SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       201 ---~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                         +.....+++..|+.+..-..+-.|.++..+.+..+++..++-.-..+.+.++++|+.+...+....+-..++.++..
T Consensus       217 nnl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         217 NNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             cCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence               34556788888998887777889999999999999999999999999999999999999999999998888888776


Q ss_pred             hCCcc
Q 023012          278 IGPEK  282 (288)
Q Consensus       278 ~~~~~  282 (288)
                      .+.+|
T Consensus       297 aks~k  301 (309)
T COG5070         297 AKSKK  301 (309)
T ss_pred             HHHHH
Confidence            65443

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.33  E-value=1.9e-13  Score=110.30  Aligned_cols=254  Identities=10%  Similarity=0.091  Sum_probs=190.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR   86 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~   86 (288)
                      .|..-.|..+..-+++-.++...|++.  ...+ |+.-++.++.-.-++.+...|.||++...++.+..-....+.+++|
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~--~~~~-~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw  123 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRRKY--IKAK-WRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSW  123 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhhHH--HHHH-HHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHH
Confidence            455667777776666666655544421  1122 2335666677777888889999999999999999999999999999


Q ss_pred             HHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012           87 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA  166 (288)
Q Consensus        87 ~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~  166 (288)
                      +++|.|-++.|+.|+++|+.|+.++...|...+.              ...+.+...|+.+.++++-+||+.++....+.
T Consensus       124 ~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd--------------~aggsnp~~GD~lvi~GATlYaVSNv~EEflv  189 (336)
T KOG2766|consen  124 FFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD--------------RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV  189 (336)
T ss_pred             HHHHHHHhhheeeeEEeEecceEEEEEeeecccc--------------ccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence            9999999999999999999999999888765421              12245667899999999999999999999987


Q ss_pred             cCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCc-hHHHHHHHH--HHHHHHHHHHHHHHhhcccCCcceeehhhhHHH
Q 023012          167 NASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS-FYSFLLMLV--LSILAFFAEVLLARGLQLEKTSKVANVQYIEVA  243 (288)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv  243 (288)
                      | +.+....+....++|.+++.+= +..+..+..+ -++|....+  ..+..++-|.+.-.-+|..+++..+.-..+.-.
T Consensus       190 k-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDm  267 (336)
T KOG2766|consen  190 K-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDM  267 (336)
T ss_pred             h-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHH
Confidence            6 4556677777788888887765 3222222211 112322222  334456778888888899999999998899999


Q ss_pred             HHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012          244 LTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE  281 (288)
Q Consensus       244 ~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  281 (288)
                      .+.++  -.||-..+|...+....+..|.+++..+++.
T Consensus       268 wsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~  303 (336)
T KOG2766|consen  268 WSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKD  303 (336)
T ss_pred             HHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccC
Confidence            99998  5677779999999999999998887666543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.27  E-value=1.8e-10  Score=99.00  Aligned_cols=131  Identities=11%  Similarity=0.065  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc---CccccCchHHHHHHHHHHHHHHHHHHH
Q 023012          145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF---EEFVLPSFYSFLLMLVLSILAFFAEVL  221 (288)
Q Consensus       145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gi~~~~~~~~  221 (288)
                      .++.+.+++++|..++..|+..++ +++.  ..+....+.+...+.....   .++..++...|..+...++.....+.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            467799999999999999986654 3332  3444444444444443322   234444455555566556666799999


Q ss_pred             HHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          222 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +++++++.+++.++++.+++|+++.+++++++||+++..+++|..+++.|+.+....
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999887654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.21  E-value=2.9e-10  Score=97.83  Aligned_cols=231  Identities=19%  Similarity=0.187  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccC
Q 023012           43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS  122 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~  122 (288)
                      .++.+.+...++..+-+.|+...|.+.++.+....-++..+++.+++|||++++++.|..+++.|..++...+.++.+  
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~--  129 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP--  129 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC--
Confidence            344555555788889999999999999999999999999999999999999999999999999999876544322111  


Q ss_pred             CCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHH-------hhhHHhH-hc
Q 023012          123 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASP-------AAGICLF-FF  194 (288)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~  194 (288)
                        ..+.+|-. +...+ .....+...... +...+.....+|..+++  ...........+..       +...+.. ..
T Consensus       130 --~~t~~~l~-~~~~~-~~fl~y~~~~~~-~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~  202 (300)
T PF05653_consen  130 --IHTLDELI-ALLSQ-PGFLVYFILVLV-LILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILIKLTFS  202 (300)
T ss_pred             --cCCHHHHH-HHhcC-cceehhHHHHHH-HHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHHHHHhc
Confidence              00000000 00001 111122212211 12222222222212111  11010000111110       0000001 11


Q ss_pred             CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccC--Cch----hhHhHHHH
Q 023012          195 EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIA--PSF----GRLVGCVL  267 (288)
Q Consensus       195 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~--~~~----~~~~G~~l  267 (288)
                      ++....++..|..++...........+.++|+++-+++.+.++.+ .-...+.+-+.++++|-  .+.    ....|+..
T Consensus       203 g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~  282 (300)
T PF05653_consen  203 GDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLI  282 (300)
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            111122455555555554445588888999999999999999888 44778888888899984  444    34667778


Q ss_pred             HHHHHHHHHHhCCcc
Q 023012          268 ILVSVFYTMYIGPEK  282 (288)
Q Consensus       268 i~~g~~~~~~~~~~~  282 (288)
                      ++.|+.++..+++++
T Consensus       283 ii~GV~lL~~~~~~~  297 (300)
T PF05653_consen  283 IIIGVFLLSSSKDKE  297 (300)
T ss_pred             HHHhhheeeccCchh
Confidence            888887765554443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.18  E-value=2e-10  Score=89.58  Aligned_cols=215  Identities=11%  Similarity=0.068  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCC
Q 023012           48 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVK  127 (288)
Q Consensus        48 ~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~  127 (288)
                      .++-...++.|..|++.++++.++.+...+-.|+.+++++.+|+|+...++++..+++.|+.++.+.|-.          
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~----------  129 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE----------  129 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch----------
Confidence            3444577889999999999999999999999999999999999999999999999999999999876522          


Q ss_pred             CcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh-----HHHHHHHHHHHhhhHHhHhc--CccccC
Q 023012          128 PGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLV-----TVFSFGILASPAAGICLFFF--EEFVLP  200 (288)
Q Consensus       128 ~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~  200 (288)
                                -..++.|+.+++.|+...|+|.+..|+.....+-...     ...++.+.-.-+...+...+  +++...
T Consensus       130 ----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsF  199 (290)
T KOG4314|consen  130 ----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSF  199 (290)
T ss_pred             ----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHH
Confidence                      1357899999999999999999999986542211111     11111111110111111111  233333


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          201 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       201 ~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      ...-|..+...+.++..-.++.+.+.....|-..+.=+.....--..++.++-+-..+.....|.++|..|-++....+.
T Consensus       200 A~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d  279 (290)
T KOG4314|consen  200 AAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED  279 (290)
T ss_pred             hhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence            44457777777766666667777888888888888888888888888997766667788999999999999877666554


Q ss_pred             cc
Q 023012          281 EK  282 (288)
Q Consensus       281 ~~  282 (288)
                      |.
T Consensus       280 ~~  281 (290)
T KOG4314|consen  280 KD  281 (290)
T ss_pred             hh
Confidence            43

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=9.3e-11  Score=95.89  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=188.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCC-C---CCC----CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQ-P---IFG----PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP   78 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~-~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P   78 (288)
                      .|..+++...+....+...+.+..++ +   ..+    +-+..+...-..+.......+--+++++++++-..+--++..
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            46777888888877776665443221 1   111    111122233333333344445567888999988888888999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 023012           79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS  158 (288)
Q Consensus        79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~  158 (288)
                      +|++++++.++|+|-+.....+..+.+.|..+=.+.+.                   ..+.-++.|.++++.+.++-|+.
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~-------------------~~~~ls~~GvifGVlaSl~vAln  200 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEG-------------------STGTLSWIGVIFGVLASLAVALN  200 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheecccccc-------------------ccCccchhhhHHHHHHHHHHHHH
Confidence            99999999999999999988888887777755433321                   12456889999999999999999


Q ss_pred             HHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHhcCcc-------ccCchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 023012          159 YCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEK  230 (288)
Q Consensus       159 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~  230 (288)
                      .+..|+... ..+.-.....+..+.+.++.++.....+++       +.++.+.|..+...|++++.-...-.+-+|..+
T Consensus       201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TS  280 (347)
T KOG1442|consen  201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTS  280 (347)
T ss_pred             HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecc
Confidence            999998443 345566778888888888888877655432       335778899999999999844444556678899


Q ss_pred             CcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          231 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       231 ~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      |.+-+.-..-......+++..+++|.-+...|-+-++++.|...+.+.+
T Consensus       281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            9999888889999999999999999999999999999999988877643

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.17  E-value=9e-10  Score=95.29  Aligned_cols=135  Identities=10%  Similarity=0.015  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-----CchHHHHHHHHHHHH
Q 023012          140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSIL  214 (288)
Q Consensus       140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~  214 (288)
                      +...|.++.++++++|+...+..|.. . +.++....+++...+.++..+.....++...     .+..++.... .+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HHHH
Confidence            45689999999999999999999874 3 4678889999988887766554433322111     1233333333 4444


Q ss_pred             -HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          215 -AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       215 -~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                       ....+.++++++++.+++.++.+.++.|++..+++++++||+++..+++|..+.+.|+.+...
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence             458899999999999999999999999999999999999999999999999999999987654

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.11  E-value=1.2e-09  Score=85.11  Aligned_cols=133  Identities=18%  Similarity=0.150  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccC------CCCchhHHHHHHHHHHHhhhHHhHhcCccccC-------------chHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANA------SDQPLVTVFSFGILASPAAGICLFFFEEFVLP-------------SFYS  204 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  204 (288)
                      |.++++.+.++.+++.++.|+..++      +.++.....+....+.+...+.....++....             +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5788999999999999999986654      56677888888888888888777665543310             2355


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          205 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       205 ~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      +..++..|+.+..-+...+..+++.+|...+....+..+...+.++++++|++|..+++|..+.+.|++++.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            667777788888999999999999999999999999999999999999999999999999999999988765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=99.08  E-value=2.7e-09  Score=90.38  Aligned_cols=133  Identities=14%  Similarity=0.077  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-------ccCchHH-HHHHHHHHHH
Q 023012          143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYS-FLLMLVLSIL  214 (288)
Q Consensus       143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~l~~~gi~  214 (288)
                      .|..+.++++++|+...+..|.. . +.++....+++.+.+.++..+.....++.       ...+... +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            37889999999999999999984 3 47788999999998877665544332221       1122222 4456666777


Q ss_pred             HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                      ....+.+++.++++.+++.++.+.++.|+++.+++++++||+++..+++|..+.++|+.+...
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            779999999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.03  E-value=1.8e-08  Score=83.00  Aligned_cols=221  Identities=9%  Similarity=0.068  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012           42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  121 (288)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~  121 (288)
                      ..+...+++-..+..+++.++.+++++.-..+-...-+|+.+++.-+++++++.+||+|+.....|+..+...+..... 
T Consensus        87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~-  165 (372)
T KOG3912|consen   87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT-  165 (372)
T ss_pred             ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-
Confidence            4556688999999999999999999999999999999999999999999999999999999999999998776644311 


Q ss_pred             CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCchhHHHHHHHHHHHhhhHHhHhcC-----
Q 023012          122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA-GANASDQPLVTVFSFGILASPAAGICLFFFE-----  195 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  195 (288)
                                 +.-.+......|+++.+++-+.-|+..++-.| +.+.+.+|.....+..+++.+....+.....     
T Consensus       166 -----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~  234 (372)
T KOG3912|consen  166 -----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG  234 (372)
T ss_pred             -----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence                       00111245678999999999999999998866 4445678888999999998665544443211     


Q ss_pred             -cccc-C--chHHHH------------HHHHHHHHHHHHHHHH----HHhhcccCCcceeehhhhHHHHHHHHHHHhhcc
Q 023012          196 -EFVL-P--SFYSFL------------LMLVLSILAFFAEVLL----ARGLQLEKTSKVANVQYIEVALTQLWGMGLSRI  255 (288)
Q Consensus       196 -~~~~-~--~~~~~~------------~l~~~gi~~~~~~~~~----~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e  255 (288)
                       .+.. |  ...+|.            .+...|..  .+..++    ..-.|..++++=.++..+...+-=+++.....|
T Consensus       235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~--vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E  312 (372)
T KOG3912|consen  235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFT--VSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE  312 (372)
T ss_pred             CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhh--hheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence             1111 1  123332            22222222  222222    223456677777788888888888888888999


Q ss_pred             CCchhhHhHHHHHHHHHHHHH
Q 023012          256 APSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       256 ~~~~~~~~G~~li~~g~~~~~  276 (288)
                      .++..|+.|..+.+.|+.+++
T Consensus       313 ~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  313 YFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999876

>TIGR00803 nst UDP-galactose transporter

Probab=99.01  E-value=3.4e-09  Score=87.82  Aligned_cols=208  Identities=10%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             ccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc----CCC-CCCCcccccccccchh
Q 023012           66 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV----SGG-LVKPGEAISLNVRGSD  140 (288)
Q Consensus        66 ~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~  140 (288)
                      +........+..|+++++......+||.+..|+++.++...|+..-...+.+....    .+. ..+.++..++......
T Consensus         3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~   82 (222)
T TIGR00803         3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN   82 (222)
T ss_pred             cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence            34445566778888888888888888888888888888888877543332211000    000 0000001101112235


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhH-HHHHHHHHHHhhhHHhHhcCccc--cC-c-hHH-HHHHHHHHHH
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVT-VFSFGILASPAAGICLFFFEEFV--LP-S-FYS-FLLMLVLSIL  214 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~-~~~l~~~gi~  214 (288)
                      .+.|..+.+.+..+-+...++.++..|+++..... .......+.+.... .....+..  .. + ... -.......+.
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcccCCchHHHHHHHH
Confidence            67888888888888888888888865543322211 11112222222111 11111111  00 0 000 1112222344


Q ss_pred             HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012          215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  274 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~  274 (288)
                      +..+..+..+.+|+.++...+....++++++.+++++++||+++..++.|..+++.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            557777899999999999999999999999999999999999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.97  E-value=1.3e-08  Score=76.24  Aligned_cols=122  Identities=19%  Similarity=0.182  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHH
Q 023012          143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVL  221 (288)
Q Consensus       143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~  221 (288)
                      .|+++.+.+.++-+.+.++.|+..++.. ....... ..    ....  ..      .++   ...++.|+.+. +++.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~~----~~~~--~~------~~p---~~~i~lgl~~~~la~~~   64 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-FI----AALL--AF------GLA---LRAVLLGLAGYALSMLC   64 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-HH----HHHH--HH------hcc---HHHHHHHHHHHHHHHHH
Confidence            4778899999999999999998665322 2111111 00    0000  00      111   11355666654 99999


Q ss_pred             HHHhhcccCCcceeehhhhHHHHHHHHHHH--hhccCCchhhHhHHHHHHHHHHHHHHhCCc
Q 023012          222 LARGLQLEKTSKVANVQYIEVALTQLWGMG--LSRIAPSFGRLVGCVLILVSVFYTMYIGPE  281 (288)
Q Consensus       222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~--~~~e~~~~~~~~G~~li~~g~~~~~~~~~~  281 (288)
                      |..++++.|++++.++....++...+.++.  ++||++|+.+++|..+|++|+++..+.+++
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999999999999998888888875  899999999999999999999988765444

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.95  E-value=8.1e-09  Score=87.56  Aligned_cols=119  Identities=18%  Similarity=0.086  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcc
Q 023012          155 GGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLARGLQLEKTSK  233 (288)
Q Consensus       155 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~  233 (288)
                      |+...+..|...++..++....+++...+.+...+.... .    ++.+++......|.++. +.+.+++.++++.+++.
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~   75 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR-R----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE   75 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-c----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            455667778866556778888888888877766554332 2    45667777777777764 89999999999999999


Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      ++.+..++|+++.+++++++||+++..+++|..+.+.|+.+....
T Consensus        76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~  120 (260)
T TIGR00950        76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD  120 (260)
T ss_pred             hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence            999999999999999999999999999999999999999887644

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.94  E-value=2.1e-08  Score=88.61  Aligned_cols=138  Identities=15%  Similarity=0.083  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCc-cc--cCchHHHHHHHHHHHHHHH
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FV--LPSFYSFLLMLVLSILAFF  217 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~gi~~~~  217 (288)
                      ...-++.++..=++|+...++.|...+...++.....++...+.++..++....+. ..  ..+..+|..+...|+++..
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            55667788888899999999999988888889889999988888777766554322 22  2246677888888887765


Q ss_pred             HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHh------hccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL------SRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~------~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      .+.+++.++++.+++.++.+.++.|+++.++++++      ++|+++..+++|.++-++|+.++...
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~  157 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY  157 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence            66789999999999999999999999999999999      69999999999999999999876653

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.89  E-value=5.2e-08  Score=80.14  Aligned_cols=231  Identities=9%  Similarity=0.038  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012           43 LLVLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  121 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~  121 (288)
                      .........+..+.+-.+|+++ +|...=.+.-+..++-++++++++.|+|-+.+|..++++..+|+++....+..+...
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~  145 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS  145 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence            3344444456677777888886 777777778889999999999999999999999999999999998876554333221


Q ss_pred             CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCchhHHHHHHHHHHHhhhHHhHh-------
Q 023012          122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFF-------  193 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------  193 (288)
                      ..+.+|.   +++......-..|+.+...+-+.-|.-.+++.+.-+ ...++...+++.-..+.+..+...-.       
T Consensus       146 ~~~~l~~---~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~  222 (330)
T KOG1583|consen  146 KLSGLDS---GSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRL  222 (330)
T ss_pred             hhccccc---CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHH
Confidence            0001111   111112234456777766666666655555443222 23446667777777776665443210       


Q ss_pred             ---cCccccC-----chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHH
Q 023012          194 ---FEEFVLP-----SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGC  265 (288)
Q Consensus       194 ---~~~~~~~-----~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~  265 (288)
                         .+.+..|     -|..|.+++...+.-....--.+.--.+.++.+++++..+.-.++.+++++.++.++|++.|+|.
T Consensus       223 ~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa  302 (330)
T KOG1583|consen  223 AFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGA  302 (330)
T ss_pred             HhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHH
Confidence               1111111     35667777666655444444445555678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023012          266 VLILVSVFYTM  276 (288)
Q Consensus       266 ~li~~g~~~~~  276 (288)
                      .++..|.++..
T Consensus       303 ~lVF~Gt~~fa  313 (330)
T KOG1583|consen  303 ALVFFGTLLFA  313 (330)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.80  E-value=1.9e-07  Score=68.33  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           49 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        49 ~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      .+...+..++.+++++.|.+.+..+.++.|+++.+++++++|||++.+|++|+.+++.|++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5556788899999999999999999999999999999999999999999999999999998874

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.77  E-value=5.5e-08  Score=71.65  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          202 FYSFLLMLVLSILAF-FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       202 ~~~~~~l~~~gi~~~-~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      .+.+.+....|+.+. .++.++..+.++.+ +.+..+..++|+++.+++++++||+++..++.|..++++|+.++.+.+.
T Consensus        31 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   31 RKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            355667777787776 99999999999999 5888999999999999999999999999999999999999999888765


Q ss_pred             cc
Q 023012          281 EK  282 (288)
Q Consensus       281 ~~  282 (288)
                      +.
T Consensus       110 ~~  111 (113)
T PF13536_consen  110 TG  111 (113)
T ss_pred             cc
Confidence            43

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.77  E-value=2.1e-07  Score=80.35  Aligned_cols=132  Identities=16%  Similarity=0.056  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLL  222 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~  222 (288)
                      =.+..++-.+.|+...+..|...+ +.+|.....++...+.++..+.....+ ...++.+++......|.+.. ..+.++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~   86 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRG-HPLPTLRQWLNAALIGLLLLAVGNGMV   86 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567778889999999998654 677888889888888777666554333 22345667877777887754 777888


Q ss_pred             HHhh-cccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          223 ARGL-QLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       223 ~~al-~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +.+. ++.+++.++.+.+++|+++.+++++ +||+++..+++|.++.++|+.+....
T Consensus        87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~  142 (292)
T PRK11272         87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG  142 (292)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence            8888 9999999999999999999999985 79999999999999999998876543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.77  E-value=5.2e-06  Score=72.32  Aligned_cols=231  Identities=13%  Similarity=0.094  Sum_probs=150.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHhhh
Q 023012           38 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKL-------KIAEIGGLALSFFGVL  109 (288)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~-------~~~~~~g~~l~~~Gv~  109 (288)
                      .+....-.+.|++-.+++..++.++++.+.+.+..+.. +.-+...++..++++|-.       ...-.+|+++.++|+.
T Consensus        70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~  149 (345)
T PRK13499         70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA  149 (345)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence            34455677888888899999999999999999998855 788889999999988754       2346779999999999


Q ss_pred             heecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH-------HHHHhcccCCCCchhHHHHHHH-
Q 023012          110 FIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-------CLIKAGANASDQPLVTVFSFGI-  181 (288)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~-  181 (288)
                      +....+...++         ++.+++........|+..++++.+.++.++       ...+...+...++.....-+.. 
T Consensus       150 l~s~Ag~~k~~---------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~  220 (345)
T PRK13499        150 IVGRAGQLKER---------KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVV  220 (345)
T ss_pred             HHHHhhhhccc---------ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHH
Confidence            98774322211         000000123456789999999999999999       4443311112223222222222 


Q ss_pred             --HHHHhhhH-HhHh---c-Cccc---cC--c----hHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceee---hh-hhH
Q 023012          182 --LASPAAGI-CLFF---F-EEFV---LP--S----FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN---VQ-YIE  241 (288)
Q Consensus       182 --~~~~~~~~-~~~~---~-~~~~---~~--~----~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~---~~-~~~  241 (288)
                        .+..+.-. ....   . +++.   ..  +    ..+...-..-|+.-.++..++..+-++.+......   +. .+.
T Consensus       221 ~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~  300 (345)
T PRK13499        221 IMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFY  300 (345)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHH
Confidence              22222221 1110   1 1211   11  1    23444445666677788889998888886654444   44 788


Q ss_pred             HHHHHHHHHHhhccCCc------hhhHhHHHHHHHHHHHHHHh
Q 023012          242 VALTQLWGMGLSRIAPS------FGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       242 pv~~~l~~~~~~~e~~~------~~~~~G~~li~~g~~~~~~~  278 (288)
                      .+++.+++. ++||.=+      ...++|.++++.|..+....
T Consensus       301 ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        301 VLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            899999998 5999655      66789999999998876554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.74  E-value=2.2e-07  Score=77.45  Aligned_cols=136  Identities=13%  Similarity=0.069  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-----CchHHHHHHHHHHHHH
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSILA  215 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~  215 (288)
                      ...|+++++.+-+.|+....+.|-+.  ..++..+..+..+.+.+....+....+++..     .++..+......++..
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44799999999999999999999963  5678889999999998888777666655442     3677788888888888


Q ss_pred             HHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          216 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       216 ~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      ...+..+.+|..+.+...+|.=-+++|++.++++.++++|+++..|++...+..+|+....+.
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999876654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1e-08  Score=82.84  Aligned_cols=219  Identities=12%  Similarity=0.062  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHH----HHHHHHHhhhheecc
Q 023012           40 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIG----GLALSFFGVLFIFRR  114 (288)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~----g~~l~~~Gv~l~~~~  114 (288)
                      ....-++.|.+-.+++...+.|+++.+++.+..+.. +.-+-+.+++.+.++|..+..|.+    ++++.+.|+.+-...
T Consensus        58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~  137 (288)
T COG4975          58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ  137 (288)
T ss_pred             hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence            344556777777889999999999999999999977 555668899999999999888654    667777787776655


Q ss_pred             cccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc
Q 023012          115 ILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF  194 (288)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (288)
                      +.++              +++++..+.-.|....+.|.++|-.|.+..+...-   +...... ....+++......-..
T Consensus       138 ~~~n--------------k~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiL-PqAiGMv~~ali~~~~  199 (288)
T COG4975         138 DRNN--------------KEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAIL-PQAIGMVIGALILGFF  199 (288)
T ss_pred             cccc--------------ccccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhh-HHHHHHHHHHHHHhhc
Confidence            5322              12223445667888889999999999998887532   2333333 3344555544433322


Q ss_pred             CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhh----HhHHHHHHH
Q 023012          195 EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGR----LVGCVLILV  270 (288)
Q Consensus       195 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~  270 (288)
                      .. .....+.-..-...|+.-..+...+..+-++.+.++.=.++.+..+.+.+-++++++|+=|..+    ++|.++++.
T Consensus       200 ~~-~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivv  278 (288)
T COG4975         200 KM-EKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVV  278 (288)
T ss_pred             cc-ccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHH
Confidence            22 2333444445556788888999999999999999888888999999999999999999888776    568888888


Q ss_pred             HHHHHHH
Q 023012          271 SVFYTMY  277 (288)
Q Consensus       271 g~~~~~~  277 (288)
                      |..++..
T Consensus       279 gai~lg~  285 (288)
T COG4975         279 GAILLGI  285 (288)
T ss_pred             Hhhhhhe
Confidence            8776543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.67  E-value=3.2e-07  Score=79.63  Aligned_cols=119  Identities=12%  Similarity=-0.061  Sum_probs=95.2

Q ss_pred             HHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHh-cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceee
Q 023012          158 SYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF-FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN  236 (288)
Q Consensus       158 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~  236 (288)
                      .+++.|...++...|....+.+...+.+...+.... ..+....+.++|..++..|++....+.+.+.++++.+++.+++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            345667766544668888888877776554443111 1122234678899999999987788899999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          237 VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       237 ~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      +..++|+++.++++++++|+++..+++|..++++|+.+..
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999997653

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.67  E-value=6.9e-07  Score=79.08  Aligned_cols=136  Identities=12%  Similarity=-0.091  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc-Cc-cccC-chHHHHHHHHHHHHHHH
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF-EE-FVLP-SFYSFLLMLVLSILAFF  217 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~l~~~gi~~~~  217 (288)
                      ++.-..+.+.--.+...++...|...+..+-|......+.+.+.+......... .+ .... ...+|..++..|++...
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~  126 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF  126 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            344434444333444556667788765433388889999888876654433221 11 1111 23477788899998887


Q ss_pred             HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      .+...+.++++.+++.++++..++|+++.++++++++|+++..++.+.+++++|+.+..
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            77778899999999999999999999999999999999999999999999999998765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.67  E-value=5e-07  Score=66.10  Aligned_cols=62  Identities=16%  Similarity=-0.002  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          216 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       216 ~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                      ..++.++..++++.|.+++..+.++.++.+.+++++++||++|+.+++|..++++|++....
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            38999999999999999999999999999999999999999999999999999999887643

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=2.1e-07  Score=78.44  Aligned_cols=230  Identities=19%  Similarity=0.142  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccccccccc
Q 023012           42 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  121 (288)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~  121 (288)
                      +.++.+.+...++..+-|-|+.+.|.+.++.+..++-+..++++..+++||++....+|.+++++|-.+++...-++++ 
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~-  143 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE-  143 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc-
Confidence            3456667777899999999999999999999999999999999999999999999999999999998777654322211 


Q ss_pred             CCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhh-----hHHh--Hhc
Q 023012          122 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAA-----GICL--FFF  194 (288)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~  194 (288)
                          .++.++..+-..++.. +.+...++..++.  -....|. .....+.......-.+.+..--     +..+  ...
T Consensus       144 ----i~t~~el~~~~~~~~F-liy~~~iil~~~i--l~~~~~p-~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~  215 (335)
T KOG2922|consen  144 ----IESVEEVWELATEPGF-LVYVIIIILIVLI--LIFFYAP-RYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTF  215 (335)
T ss_pred             ----cccHHHHHHHhcCccH-HHHHHHHHHHHHH--Hheeecc-cccccceeehhhHhhhhcceeeeeHHHHHHHHHHHh
Confidence                1111111111111111 2222222222221  2222232 1122233333322222221100     0000  111


Q ss_pred             -CccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhh-HHHHHHHHHHHhhccC--Cch----hhHhHHH
Q 023012          195 -EEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYI-EVALTQLWGMGLSRIA--PSF----GRLVGCV  266 (288)
Q Consensus       195 -~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~-~pv~~~l~~~~~~~e~--~~~----~~~~G~~  266 (288)
                       ++.....+..|.+++....+...-....++|++.-+++.++++.+. --.++++-+.++|+|-  .+.    .+..|+.
T Consensus       216 ~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~  295 (335)
T KOG2922|consen  216 SGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV  295 (335)
T ss_pred             cCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence             1222234566777666666666778888999999999999999884 4788888999999983  333    3577888


Q ss_pred             HHHHHHHHHHHhCC
Q 023012          267 LILVSVFYTMYIGP  280 (288)
Q Consensus       267 li~~g~~~~~~~~~  280 (288)
                      .++.|+.++...++
T Consensus       296 ti~~G~flL~~~kd  309 (335)
T KOG2922|consen  296 TIFLGIFLLHRTKD  309 (335)
T ss_pred             HhhheeeEeeeecc
Confidence            88888887754443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.65  E-value=4.7e-07  Score=78.24  Aligned_cols=111  Identities=14%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHH-HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHH
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMAS   82 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~   82 (288)
                      ++.++...... ..++.+++.++..........+.+.+. .+.+..+...+++.++++++++.+++.++++.++.|++..
T Consensus       172 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~  250 (293)
T PRK10532        172 AEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAA  250 (293)
T ss_pred             ccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHH
Confidence            34566665444 344555555554443321111222222 2345555567888899999999999999999999999999


Q ss_pred             HHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012           83 IAARIILREKLKIAEIGGLALSFFGVLFIFRRI  115 (288)
Q Consensus        83 ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~  115 (288)
                      ++++++++|+++..+++|.++.+.|++......
T Consensus       251 l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        251 VSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998886554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.64  E-value=5.1e-07  Score=78.28  Aligned_cols=125  Identities=15%  Similarity=0.079  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH-HHHHHHHH
Q 023012          146 LVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF-FAEVLLAR  224 (288)
Q Consensus       146 l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~-~~~~~~~~  224 (288)
                      ++.++++++|+...+..|...+ +.+|....+++...+.+...+... ..  .    ..+..+...|+... ..+.+++.
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~~-~~--~----~~~~~~~~~g~~~~~~~~~~~~~   78 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFVA-RP--K----VPLNLLLGYGLTISFGQFAFLFC   78 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHhc-CC--C----CchHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999998664 577888888887776554433221 11  1    11233444555443 45557778


Q ss_pred             hhcc-cCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          225 GLQL-EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       225 al~~-~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +.++ .+++.++.+.+++|+++.+++++++||+++..+++|..+.++|+.+....
T Consensus        79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            8887 57789999999999999999999999999999999999999998877643

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.60  E-value=4.1e-07  Score=78.42  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA  223 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~  223 (288)
                      +++++++++++|+...+..|+..  ..++....  ....+.++.........+.....+..+..-+..|+.-..++.+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~   77 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF   77 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence            57889999999999999999954  23333333  233444443333332222111235555556666666679999999


Q ss_pred             HhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhh----HhHHHHHHHHHHHHHHhC
Q 023012          224 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~----~~G~~li~~g~~~~~~~~  279 (288)
                      .+.++.+.+.+-.+.+ ++++++.+++.+++||+++..+    ++|.++++.|+.+....+
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            9999999999999999 9999999999999999999999    999999999988875554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.56  E-value=1.2e-06  Score=75.85  Aligned_cols=131  Identities=19%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHH
Q 023012          143 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLL  222 (288)
Q Consensus       143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~  222 (288)
                      .++++++.++++|+......|...+ ..+|......+...+.++..+... ..+   .....+..+...++.......++
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~~~   78 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTVG-FPR---LRQFPKRYLLAGGLLFVSYEICL   78 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHcc-ccc---cccccHHHHHHHhHHHHHHHHHH
Confidence            3567789999999999999998664 577888888887777666554321 111   11112222222223223444555


Q ss_pred             HHhh----cccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          223 ARGL----QLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       223 ~~al----~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      +.++    +..++..++.+.++.|+++.++++++++|+++..+++|+++.++|+.++...
T Consensus        79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            5555    4567788899999999999999999999999999999999999999877644

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.51  E-value=1.3e-06  Score=71.87  Aligned_cols=206  Identities=13%  Similarity=0.055  Sum_probs=149.0

Q ss_pred             HHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccccccccCCCCCCCcccccccc
Q 023012           57 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNV  136 (288)
Q Consensus        57 ~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (288)
                      +---++.|++-..-.+...+--+=+++.+.++-+.|-+....++..+...|.++....|.+.                  
T Consensus       122 Lsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------------------  183 (367)
T KOG1582|consen  122 LSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------------------  183 (367)
T ss_pred             cCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------------------
Confidence            33445666666655555555555567778888899999999999999999999987776443                  


Q ss_pred             cchhhHHHHHHHHHHHHHHHHH-HHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcccc-------CchHHHHHH
Q 023012          137 RGSDHMLAVLVGLFSSITGGIS-YCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-------PSFYSFLLM  208 (288)
Q Consensus       137 ~~~~~~~G~l~~l~~~~~~a~~-~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l  208 (288)
                      .+..+..|+.+.-.+-++-|.- ++.-|.+.+...+.....++....+.+..+......++...       .+.......
T Consensus       184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~  263 (367)
T KOG1582|consen  184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA  263 (367)
T ss_pred             CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence            1345667877666666665554 44444433333344455666667777666655554443221       123466777


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          209 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       209 ~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      +..+..+.++......-.+.-++..+..+....-..++++++++|..++|....-|..+++.|+.+-.+.++
T Consensus       264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            777777778888888888888999999999999999999999999999999999999999999988666653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.49  E-value=3.2e-06  Score=72.44  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCcc-ccCchHHHHHHHHHHHH-HHH
Q 023012          140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-VLPSFYSFLLMLVLSIL-AFF  217 (288)
Q Consensus       140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~-~~~  217 (288)
                      ....+....+..++.|+......|+..+...+...........+....... ...+.. ..+....+......+.+ ...
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPL-LLLEPRGLRPALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHH-HHhhcccccccccchHHHHHHHHHHHHH
Confidence            455777888888899999999998865543445555554555555442211 211111 11122223444445544 559


Q ss_pred             HHHHHHHhhcccCCcceeehhhhHHHHHHHHHH-HhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGM-GLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~-~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      .+.+++.++++.+++.+..+.++.|++..++++ ++++|+++..++.|..+.+.|+.+....+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~  148 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG  148 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence            999999999999999999999999999999997 66799999999999999999999887766543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.43  E-value=2.3e-06  Score=64.18  Aligned_cols=73  Identities=23%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHH--HhcccchHHHHHHHHHHHHhhhheeccc
Q 023012           43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI  115 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~--~l~e~~~~~~~~g~~l~~~Gv~l~~~~~  115 (288)
                      .++++..+...+..++.+++++.|.+.+..+.+..+.++.+.++.  +++|+++.+|++|+++.++|++++..++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            345566666788999999999999999999999999888888885  8999999999999999999999986543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.34  E-value=1.3e-05  Score=62.18  Aligned_cols=108  Identities=21%  Similarity=0.287  Sum_probs=90.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhCCCC--------CC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 023012            4 QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA   70 (288)
Q Consensus         4 ~~~~~~~~~~~R~~~a~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   70 (288)
                      ++.++.++..+....+.+++.+.........        ..     ..+....+...++.....+.+.+..++++++...
T Consensus        31 ~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~  110 (153)
T PF03151_consen   31 KKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTY  110 (153)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHH
Confidence            5789999999999999988877654332211        00     2234456777888888999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           71 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        71 ~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      +++.....+.+.++++++++|+++.+++.|+++++.|+.+-
T Consensus       111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen  111 SVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            99999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.23  E-value=1.4e-05  Score=58.88  Aligned_cols=68  Identities=9%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          215 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      -.+++.++..++|+.|.+.+=.+ ..+..+.+.+++++++||++|+.+++|..+|+.|++.++..++++
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~  108 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA  108 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            34899999999999999877666 468899999999999999999999999999999999887765444

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.21  E-value=2.9e-05  Score=67.67  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCchhHHHHHHHHHHHhhhHHhHhcCc---cccCchHHHHHHHHHHHH
Q 023012          139 SDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEE---FVLPSFYSFLLMLVLSIL  214 (288)
Q Consensus       139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gi~  214 (288)
                      .+.+.+.+++-.-+++-+..++....+.++ .+.|....+.....-.++.........+   +.......|..-+..+++
T Consensus         9 ~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~   88 (334)
T PF06027_consen    9 RRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALL   88 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHH
Confidence            456667777777777777777766665443 2224333333333222222222222211   111223455555556888


Q ss_pred             HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      -.-+..+...|.++++.+.+.++.....++++++++++++|++++.+++|+.+.++|+.++...+
T Consensus        89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            88999999999999999999999999999999999999999999999999999999988876654

Some of the sequences in this family are annotated as putative membrane proteins.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.15  E-value=3.8e-05  Score=64.48  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=86.3

Q ss_pred             chhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHH
Q 023012          172 PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGM  250 (288)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~  250 (288)
                      |..-.......+.++.....+...+...++...+..-+..|++-.+++..++++.++.+.+++.+++. ++-+.+.++++
T Consensus        12 ~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv   91 (269)
T PF06800_consen   12 PANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGV   91 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHH
Confidence            43444444444455554444444333333568888888999999999999999999999999999996 88888999999


Q ss_pred             HhhccCCchhhH----hHHHHHHHHHHHHHHhCCcccc
Q 023012          251 GLSRIAPSFGRL----VGCVLILVSVFYTMYIGPEKEM  284 (288)
Q Consensus       251 ~~~~e~~~~~~~----~G~~li~~g~~~~~~~~~~~~~  284 (288)
                      ++|||..+..++    .+.++++.|+.+..++++++++
T Consensus        92 ~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   92 LFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             hhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence            999998876654    4788999999998888776654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.07  E-value=3.5e-05  Score=56.79  Aligned_cols=70  Identities=19%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHH-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheec
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  113 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~  113 (288)
                      ..+..++...+..++..+++++|.+.+-.+. ...-+.+.+.+.++++|+++..|++|+.+.+.|++.+-.
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            4566777788999999999999999998886 588899999999999999999999999999999988843

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.05  E-value=2.9e-05  Score=56.45  Aligned_cols=66  Identities=18%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          215 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      -.+++.++..++|+.|.+.+=.+ ..+..+.+.+++++++||++|+.+++|..+|+.|++.++..++
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34888888999999999776555 5688999999999999999999999999999999999876554

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=98.04  E-value=3.6e-05  Score=54.83  Aligned_cols=69  Identities=20%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      ..++..++...+..+.-.|++++|.+.+-.+.. .--+.+.+.+++++|||++..|++++.+.++|++.+
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            345666777888899999999999999988765 777889999999999999999999999999999877

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.01  E-value=6.9e-07  Score=73.33  Aligned_cols=134  Identities=11%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHH
Q 023012          142 MLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVL  221 (288)
Q Consensus       142 ~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~  221 (288)
                      .+|..+.-.+ ..+....+..++..+ .| |....-...+.-++...+..+.+.++.......-.++++=|+.++.+...
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e-~~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvml  113 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLE-ND-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVML  113 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhc-cC-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHH
Confidence            4677777777 667777788887553 34 44444444454444444444444443311222223445567778888889


Q ss_pred             HHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          222 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       222 ~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      .++++++.+.+.+.++....|+++.+++|++++|+.|..+.+|..+.+.|++++.+.
T Consensus       114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            999999999999999999999999999999999999999999999999999987654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.98  E-value=6.8e-05  Score=54.50  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      .....++...+..++..+++++|.+.+-.+.. ..-+.+.+.++++++|++++.|++|+.+.+.|++++-
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34566677788889999999999999988855 7888899999999999999999999999999999983

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.97  E-value=0.00023  Score=51.51  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      ......+...+..+.-.++|++|.+.+-.+.. ..-+.+.+.+++++||++++.|++|+.+.+.|++.+
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            44556666788889999999999999988766 777889999999999999999999999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.93  E-value=0.00011  Score=52.82  Aligned_cols=68  Identities=19%  Similarity=0.282  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      ......+...+..+...+++.+|.+.+-.+.. .--+.+.+.+++++||++++.|++++.+.+.|++.+
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            34456666788889999999999999988866 788889999999999999999999999999999887

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.91  E-value=0.00016  Score=62.76  Aligned_cols=122  Identities=17%  Similarity=0.084  Sum_probs=91.2

Q ss_pred             HHHHHHhcccCC-C--CchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q 023012          158 SYCLIKAGANAS-D--QPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKV  234 (288)
Q Consensus       158 ~~v~~k~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~  234 (288)
                      +.+..++..++. .  .+....+.+.....+.......... ...++...+.-.+..++...++..+-+.++++.+....
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~   93 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ   93 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            445555544322 2  3666777777777776665554443 22223333444455667777888999999999999999


Q ss_pred             eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          235 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       235 ~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      .+.....|+..++++++++|++.+..++.+.+++.+|+.+....+.
T Consensus        94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~  139 (303)
T PF08449_consen   94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS  139 (303)
T ss_pred             HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence            9999999999999999999999999999999999999998776543

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.84  E-value=0.00023  Score=62.17  Aligned_cols=133  Identities=13%  Similarity=0.033  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhH---------hcCccccCchHHHHHHHH
Q 023012          140 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF---------FFEEFVLPSFYSFLLMLV  210 (288)
Q Consensus       140 ~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~  210 (288)
                      +...|+++.+++++|++..++-.|+ .+. -+....  |. ..+....+...+         +.+.....+...+...+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~wE~~--W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKK-WSWETM--WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCC-CchhHH--HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            4678999999999999999999999 432 222222  22 222211111111         112233356788888888


Q ss_pred             HHHHHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccCC---c----hhhHhHHHHHHHHHHHHHH
Q 023012          211 LSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAP---S----FGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       211 ~gi~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~---~----~~~~~G~~li~~g~~~~~~  277 (288)
                      .|++-.+++..+..++|+.+.++..++.. ++-+.+.+++.+++||-.   +    ..-.+|.++++.|+.+..+
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988887 889999999999999754   2    3468899999999999887

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.74  E-value=0.00015  Score=51.70  Aligned_cols=65  Identities=25%  Similarity=0.072  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhcccCCcc-eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          215 AFFAEVLLARGLQLEKTSK-VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~-~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      -..++.+...++|+.|.+. .+...-.-.+.+.+.++++|+|+.++.+++|..++++|++.++..+
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            3488899999999998855 4666778899999999999999999999999999999999887654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.73  E-value=2.7e-05  Score=63.47  Aligned_cols=134  Identities=15%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA  223 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~  223 (288)
                      .++.+++-++.|+.......+..  .. |..-.....+.+.++...+.++  ..+.++...+..-+..|.+-.+++...+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~G--G~-p~qQ~lGtT~GALifaiiv~~~--~~p~~T~~~~iv~~isG~~Ws~GQ~~Qf   77 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFG--GK-PYQQTLGTTLGALIFAIIVFLF--VSPELTLTIFIVGFISGAFWSFGQANQF   77 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecC--CC-hhHhhhhccHHHHHHHHHHhee--ecCccchhhHHHHHHhhhHhhhhhhhhh
Confidence            46778888999988877776642  23 3333333344444444444333  2233467777777888888889999999


Q ss_pred             HhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhhH----hHHHHHHHHHHHHHHhCCcc
Q 023012          224 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~~~~~  282 (288)
                      ++++..+.+++.+++. .+-+-+.++++++|||-.+..++    +..++++.|+.+..+++|.+
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n  141 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN  141 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence            9999999999999988 88999999999999999987764    45677788888777776633

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.70  E-value=0.00023  Score=51.26  Aligned_cols=64  Identities=19%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhcccCCcce-eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHh
Q 023012          215 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  278 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~  278 (288)
                      -..++.+...++|+.|.+.+ +....+..+.+.+.+++++||++|+.+++|..+++.|++.++..
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            34899999999999998654 55566889999999999999999999999999999999987644

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.68  E-value=0.00069  Score=49.05  Aligned_cols=63  Identities=19%  Similarity=0.025  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhhcccCCcce-eehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          214 LAFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       214 ~~~~~~~~~~~al~~~~~~~~-~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      .-.+++.+...++|+.|.+.+ +....+..+.+.+.+++++||++|+.+++|..+++.|++.++
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            344889999999999998665 555568889999999999999999999999999999998764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.61  E-value=0.00016  Score=62.54  Aligned_cols=121  Identities=19%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-chhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHH
Q 023012          139 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFF  217 (288)
Q Consensus       139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~  217 (288)
                      .+...|..+++.++++.+.+..++|+..++... ...-                   +....+...+..|..+.. ...+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~-------------------~~~~~~~l~~~~W~~G~~-~~~~   62 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA-------------------GSGGRSYLRRPLWWIGLL-LMVL   62 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cchhhHHHhhHHHHHHHH-HHhc
Confidence            357799999999999999999999995442221 0000                   000001111222222221 2235


Q ss_pred             HHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          218 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       218 ~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      +..+.+.|+...|++.++++..+..++..+++..++||+++..++.|+.+++.|..+.....
T Consensus        63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            56677788889999999999999999999999999999999999999999999988765443

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.59  E-value=0.00034  Score=49.43  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHH
Q 023012           45 VLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALS  104 (288)
Q Consensus        45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~  104 (288)
                      .....+...+..++..+++++|.+.+-.+.. ...+.+.+.+.+++||++|.+|++|+.+.
T Consensus        33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3444567788899999999999999988765 89999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.58  E-value=0.0014  Score=49.89  Aligned_cols=104  Identities=22%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH-
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA-   84 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll-   84 (288)
                      +|..-++..+..+.+.+..+....++ +....++..+...++|+++...-.+..+...+++++.+..+.-..-++..++ 
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i  108 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLI  108 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            49999999999999887776554444 3333334455667799999999999999999999999988877666655444 


Q ss_pred             HHH----HhcccchHHHHHHHHHHHHhhhh
Q 023012           85 ARI----ILREKLKIAEIGGLALSFFGVLF  110 (288)
Q Consensus        85 ~~~----~l~e~~~~~~~~g~~l~~~Gv~l  110 (288)
                      -++    .-|+|++.+|.+|+.+.++|+.+
T Consensus       109 D~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  109 DHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            443    35799999999999999999864

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.57  E-value=0.00081  Score=51.15  Aligned_cols=129  Identities=16%  Similarity=0.053  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHH-HHHHHHHHHHHHHHHHHHH
Q 023012          145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYS-FLLMLVLSILAFFAEVLLA  223 (288)
Q Consensus       145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gi~~~~~~~~~~  223 (288)
                      .++++.++++-++...+..++.++..++....+.....+.+....+....++.+...... -.+...-|+++..-..+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~   82 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI   82 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence            466788888888888877776665455777788878888877777666655433222211 1222335677777778888


Q ss_pred             HhhcccCCcceeehhh-hHHHHHHHHHHH----hhccCCchhhHhHHHHHHHHHH
Q 023012          224 RGLQLEKTSKVANVQY-IEVALTQLWGMG----LSRIAPSFGRLVGCVLILVSVF  273 (288)
Q Consensus       224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~----~~~e~~~~~~~~G~~li~~g~~  273 (288)
                      ...++.+++....+.. -|.+.+.+++.+    .-++++++.+++|..++++|+.
T Consensus        83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            8889999877666555 678888999986    3467899999999999999975

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.47  E-value=0.033  Score=48.24  Aligned_cols=228  Identities=12%  Similarity=0.118  Sum_probs=140.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHhhhh
Q 023012           39 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLF  110 (288)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~-------e~~~~~~~~g~~l~~~Gv~l  110 (288)
                      +......+.|++-.++...|-.+++|+..+...-+ ..+.-.+-.++-.++.+       ++-....++|++++++|+.+
T Consensus        71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai  150 (344)
T PF06379_consen   71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI  150 (344)
T ss_pred             hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence            44556677888888999999999999998887554 44666666666554432       33355788999999999999


Q ss_pred             eecccccccccCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccc----CCCCchhHH----HHH
Q 023012          111 IFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA---GAN----ASDQPLVTV----FSF  179 (288)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~~~a~~~v~~k~---~~~----~~~~~~~~~----~~~  179 (288)
                      ....+...++         | .+++....+...|.+.+++|++..|..+.-...   ..+    ...++....    ..-
T Consensus       151 ~g~AG~~Ke~---------~-~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv  220 (344)
T PF06379_consen  151 CGKAGSMKEK---------E-LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVV  220 (344)
T ss_pred             HhHHHHhhhh---------h-hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhh
Confidence            9876543322         1 011112345568999999998877766664332   111    011111111    111


Q ss_pred             HHHHHHhhhHHhHh---c-Cccc---------cCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCc----ceeehhhhHH
Q 023012          180 GILASPAAGICLFF---F-EEFV---------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS----KVANVQYIEV  242 (288)
Q Consensus       180 ~~~~~~~~~~~~~~---~-~~~~---------~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~----~~~~~~~~~p  242 (288)
                      ..-+.+..+...+.   . .++.         ++-..+....+..|..-...+.+|.++-.+.+..    --...+.+..
T Consensus       221 ~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~v  300 (344)
T PF06379_consen  221 LWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIV  300 (344)
T ss_pred             hhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            12222222222221   1 1221         1123566777777788888888888888887743    4456677889


Q ss_pred             HHHHHHHHHhhcc------CCchhhHhHHHHHHHHHHHHHH
Q 023012          243 ALTQLWGMGLSRI------APSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       243 v~~~l~~~~~~~e------~~~~~~~~G~~li~~g~~~~~~  277 (288)
                      +++-+++. .++|      ++-..-++|+.+++.++.++-+
T Consensus       301 l~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  301 LFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            99999995 5888      3445568888888888776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.42  E-value=0.00084  Score=47.39  Aligned_cols=54  Identities=17%  Similarity=0.030  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhhcccCCcceee-hhhhHHHHHHHHHHHhhccCCchhhHhHHHHH
Q 023012          215 AFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI  268 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~-~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li  268 (288)
                      -..++.++.+++|+.|.+.+=. ...+..+...+.+++++||++|+.+++|..+|
T Consensus        39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3488899999999999988854 45699999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.41  E-value=0.00042  Score=58.11  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          201 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       201 ~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      ++.+...+..-+++-.+...+.+.++++.+|+...++..+..+++.+++++++|++++..||++..+..+|+.+....+.
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            45566667777777789999999999999999999999999999999999999999999999999999999998766543


Q ss_pred             c
Q 023012          281 E  281 (288)
Q Consensus       281 ~  281 (288)
                      .
T Consensus        93 ~   93 (244)
T PF04142_consen   93 Q   93 (244)
T ss_pred             c
Confidence            3

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0033  Score=51.76  Aligned_cols=61  Identities=20%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           51 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        51 ~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      ..+.+.+-..+++++|...-+++.++.|.+..+.++++++|++|..||+++...+.+..=.
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            3477778899999999999999999999999999999999999999999999988887533

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.37  E-value=0.0017  Score=47.14  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHH-hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           45 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        45 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~-~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      .+.-+..-.+...|++.+.+.+.+.+.++. ++.=++|++.++++.+|..++++++|+.+.+.|+.+.
T Consensus        45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            334455567778899999999999999995 7888889999988888888999999999999999764

Many members are annotated as potential transmembrane proteins.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.0036  Score=47.75  Aligned_cols=136  Identities=11%  Similarity=-0.022  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCc--hHHHHHHHHHHHHHHHH
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS--FYSFLLMLVLSILAFFA  218 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~~~~~  218 (288)
                      ..+..+.++.++++.....-...|+.+...+|....+.....+.+....+....++...+.  ...-.+...-|+++.+-
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~   82 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF   82 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence            4567788889999988888888887766667888888888888877777666543322221  11112222233444333


Q ss_pred             HHHHHHhhcccCC-cceeehhhhHHHHHHHHHHHhhc----cCCchhhHhHHHHHHHHHHHHH
Q 023012          219 EVLLARGLQLEKT-SKVANVQYIEVALTQLWGMGLSR----IAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       219 ~~~~~~al~~~~~-~~~~~~~~~~pv~~~l~~~~~~~----e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      -..-....++.++ ........-|.+.+.+++-+=+.    .+++...+.|.+++++|+++..
T Consensus        83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3333444566665 44455555778888888866554    5889999999999999955433

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.92  E-value=0.0081  Score=43.66  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023012          150 FSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLE  229 (288)
Q Consensus       150 ~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~  229 (288)
                      +.+++|+..+-+.|+..++.++.....  +.......              -..+|.+++.. +++..+...|+..+.+.
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~--------------Ll~n~~y~ipf-~lNq~GSv~f~~~L~~~   65 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF--------------LLLNPKYIIPF-LLNQSGSVLFFLLLGSA   65 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH--------------HHHhHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            346788889999998666433332221  21111111              11222222211 34678888999999999


Q ss_pred             CCcceeehh-hhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012          230 KTSKVANVQ-YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  274 (288)
Q Consensus       230 ~~~~~~~~~-~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~  274 (288)
                      |.+.+.++. .+.-+++.+.++++.+|..+...++|+.+++.|+.+
T Consensus        66 dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   66 DLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             CceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            999999995 799999999998888888899999999999999764

Many members are annotated as potential transmembrane proteins.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.57  E-value=0.15  Score=44.33  Aligned_cols=135  Identities=14%  Similarity=0.079  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCC---CCchhHHHHHHHHHHHhhhHHhHhcC-----ccc-------cCchHHHHH
Q 023012          143 LAVLVGLFSSITGGISYCLIKAGANAS---DQPLVTVFSFGILASPAAGICLFFFE-----EFV-------LPSFYSFLL  207 (288)
Q Consensus       143 ~G~l~~l~~~~~~a~~~v~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~  207 (288)
                      .=.+..+...+-++......|+..+++   -.+.+..+-.-+.-.+++....+...     .+.       ..++.+..-
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            444445555555666666666644433   23344444444444555544444331     111       113334444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          208 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       208 l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                      +..-+++-.+-+-+++.++.+.+|+.......+..+.+.++..++++++++..||...++..+|+.+...
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            5555555567777999999999999999999999999999999999999999999999999999998873

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.34  E-value=0.014  Score=47.66  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=67.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhe
Q 023012           38 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      +..++.+.+.++...+++.+.|.-..+-++-.-+++..+--+|+++.+.++++.+++.+||+|..+.+.|...=
T Consensus       238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            35677788899999999999999999999999999999999999999999999999999999999999987653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.29  E-value=0.017  Score=48.88  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=89.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhH
Q 023012            5 SIPLFETVFMRCTVTLILSYLWLRRSGQP------IFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP   78 (288)
Q Consensus         5 ~~~~~~~~~~R~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P   78 (288)
                      ++++.++.+.-.+...+.-.......+..      ....++.++.+.+.+.++.+++.+.++-++.-++-.-+.|..+--
T Consensus       199 k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk  278 (327)
T KOG1581|consen  199 KVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK  278 (327)
T ss_pred             CccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence            46777777777777776666554443332      123567788999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           79 IMASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        79 ~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      +++++++.+.++.++++.||+|+.+.+.|..+=.
T Consensus       279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            9999999999999999999999999999986643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.27  E-value=0.046  Score=47.38  Aligned_cols=143  Identities=12%  Similarity=0.073  Sum_probs=99.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhc--Ccc----ccCchHHHHHHHHHH
Q 023012          139 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFF--EEF----VLPSFYSFLLMLVLS  212 (288)
Q Consensus       139 ~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~l~~~g  212 (288)
                      ..-..|+++..+++++.+.+++-.||. | .-+....-..+.+++.++...+....  +++    ...+...+......|
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k-~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKV-K-GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhc-C-CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            356789999999999999999999995 3 34455555556666655543333222  221    123456677778889


Q ss_pred             HHHHHHHHHHHHhhcccCCcceeehh-hhHHHHHHHHHHHhhcc-------CCchhhHhHHHHHHHHHHHHHHhCCccc
Q 023012          213 ILAFFAEVLLARGLQLEKTSKVANVQ-YIEVALTQLWGMGLSRI-------APSFGRLVGCVLILVSVFYTMYIGPEKE  283 (288)
Q Consensus       213 i~~~~~~~~~~~al~~~~~~~~~~~~-~~~pv~~~l~~~~~~~e-------~~~~~~~~G~~li~~g~~~~~~~~~~~~  283 (288)
                      ++-.++-..|-.++|+.+.+....+. -+.-+++.++--++.++       +-....++|.++.+.|+.+..+....|+
T Consensus        81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke  159 (344)
T PF06379_consen   81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE  159 (344)
T ss_pred             HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence            99889999999999999987655444 36677777776565443       2234678999999999998876544443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.09  E-value=0.0041  Score=53.81  Aligned_cols=106  Identities=14%  Similarity=-0.013  Sum_probs=75.9

Q ss_pred             HHHHHHhccc--CCCCchhHHHHHHHHHHHhhhHHhHhc-Cc-cccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Q 023012          158 SYCLIKAGAN--ASDQPLVTVFSFGILASPAAGICLFFF-EE-FVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSK  233 (288)
Q Consensus       158 ~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~  233 (288)
                      .++..|+..+  +-.-|...+..+...+.+......... .+ .+.++...|..++-.|+...++..+-+.++++.+.+.
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhH
Confidence            3446677665  334455455444444444443332222 11 2222557888999999999999999999999999999


Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCchhhHh
Q 023012          234 VANVQYIEVALTQLWGMGLSRIAPSFGRLV  263 (288)
Q Consensus       234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~  263 (288)
                      +.++-.++|+++.++++++.+|+.+...+.
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~~~l  141 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSSMTYL  141 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcceEEE
Confidence            999999999999999999999988875433

>TIGR00803 nst UDP-galactose transporter

Probab=95.80  E-value=0.029  Score=46.34  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhh
Q 023012           43 LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF  110 (288)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l  110 (288)
                      ..+...+....+..+....+++.+....+....+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus       154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            34444556667777888999999999999999999999999999999999999999999999988753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.80  E-value=0.0077  Score=52.41  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          205 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       205 ~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      ....++.+.+.+.+...++.|+++.+++..+.+++..-+|+..++.++-+|++|+...++..+=++|++++...+.++
T Consensus       159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            345566677788999999999999999999999999999999999999999999999999999999999887775543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=95.19  E-value=0.0048  Score=48.86  Aligned_cols=68  Identities=12%  Similarity=0.018  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          215 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       215 ~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                      ...+...|..++++.+++.++.+...+-.|..+++|+++++++....++..++.+.|+++..+.++..
T Consensus        63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            34677889999999999999999999999999999999999999999999999999988877665543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.01  E-value=0.48  Score=36.29  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh-CCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHHHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRS-GQPIFG-PMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIA   84 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~~ll   84 (288)
                      +|..-.+..+..+...+..+...+ +++... .++..|..+.+|+++.+.-..-.....++.++....+.-...++..++
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll  112 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL  112 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            477778888888777666554443 322222 233344566777777776666667777777777766544444444333


Q ss_pred             HHHH-----hcccchHHHHHHHHHHHHhhhhe
Q 023012           85 ARII-----LREKLKIAEIGGLALSFFGVLFI  111 (288)
Q Consensus        85 ~~~~-----l~e~~~~~~~~g~~l~~~Gv~l~  111 (288)
                      --.|     -+++++..+++|+++.++|+.++
T Consensus       113 iD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         113 IDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            2221     15889999999999999995444

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.0079  Score=51.32  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHH
Q 023012          137 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF  216 (288)
Q Consensus       137 ~~~~~~~G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~  216 (288)
                      ...+...|.++++.+.+..+....+.|+..++.. .          +       ....++-+.+-...  .....|.+.+
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~----------~-------~~ra~~gg~~yl~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A----------S-------GLRAGEGGYGYLKE--PLWWAGMLTM   74 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h----------h-------cccccCCCcchhhh--HHHHHHHHHH
Confidence            3456778999999999999888888888544211 0          0       00001111111111  1222344433


Q ss_pred             -HHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCCcc
Q 023012          217 -FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  282 (288)
Q Consensus       217 -~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~  282 (288)
                       ++...-+.+....|++.++++..+..+.+.+++..+++|++++...+|+.+.++|...+.....++
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence             666666666677899999999999999999999999999999999999999999988766554443

>PRK02237 hypothetical protein; Provisional

Probab=94.13  E-value=0.27  Score=35.08  Aligned_cols=48  Identities=23%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             ceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          233 KVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       233 ~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      ..+...-.-.+.+.++.+.+-|++|+.++++|..+.++|+.++.+.+|
T Consensus        61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            345566677888999999999999999999999999999988766554

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.89  E-value=2.7  Score=35.40  Aligned_cols=155  Identities=9%  Similarity=0.037  Sum_probs=92.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHHHH-HHHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA-SIAA   85 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~~~-~ll~   85 (288)
                      |++..-++-.....+..+.....++.+     +....-.++|..-..++.+-.-.++.+..+....+.++.-+.+ -..+
T Consensus        26 Dg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~g  100 (254)
T PF07857_consen   26 DGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASG  100 (254)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            444444444443333333333333332     3455678888999999999999999999999999988754444 3444


Q ss_pred             HH-Hhcc---c--chHHHHHHHHHHHHhhhheeccccccc----ccCCC--CCCCcc---cc----cccc------cchh
Q 023012           86 RI-ILRE---K--LKIAEIGGLALSFFGVLFIFRRILTTQ----AVSGG--LVKPGE---AI----SLNV------RGSD  140 (288)
Q Consensus        86 ~~-~l~e---~--~~~~~~~g~~l~~~Gv~l~~~~~~~~~----~~~~~--~~~~~~---~~----~~~~------~~~~  140 (288)
                      ++ ++++   .  -+....+|++++++|..+....+.+..    ..+++  ..++.+   ++    +++.      ....
T Consensus       101 rfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~  180 (254)
T PF07857_consen  101 RFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKK  180 (254)
T ss_pred             hceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            43 3432   2  244578899999999887654322221    11111  111001   11    0111      1124


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023012          141 HMLAVLVGLFSSITGGISYCLIKAGA  166 (288)
Q Consensus       141 ~~~G~l~~l~~~~~~a~~~v~~k~~~  166 (288)
                      ...|..+++++++.|+...+=.++..
T Consensus       181 RivG~~LAv~aGvlyGs~fvPv~Yi~  206 (254)
T PF07857_consen  181 RIVGIILAVFAGVLYGSNFVPVIYIQ  206 (254)
T ss_pred             hhHhHHHHHHHHHHHhcccchHHHHH
Confidence            78899999999999998888666643

The region concerned is approximately 280 residues long.

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=92.71  E-value=0.38  Score=34.25  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=40.2

Q ss_pred             eeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          234 VANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       234 ~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      .+...-.-.+.+.++++.+-+++|+.++++|..+.+.|+.++.+.+|
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            34555667888999999999999999999999999999998776654

; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.94  E-value=5.5  Score=34.43  Aligned_cols=118  Identities=8%  Similarity=0.015  Sum_probs=74.4

Q ss_pred             HHHHHhcccCCCCch--hHHHHHHHHHHHhhhHHhHh-cCccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccCCccee
Q 023012          159 YCLIKAGANASDQPL--VTVFSFGILASPAAGICLFF-FEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVA  235 (288)
Q Consensus       159 ~v~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~al~~~~~~~~~  235 (288)
                      .+..|......+-+.  ..+..|.+.+.+.....-.. .-++.+.+.....-.+-..++-......-.+++|+.+.....
T Consensus        28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~t  107 (314)
T KOG1444|consen   28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFT  107 (314)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHH
Confidence            334455433333333  33346777776554443332 123333333222222222222223333445778999999999


Q ss_pred             ehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHH
Q 023012          236 NVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  276 (288)
Q Consensus       236 ~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~  276 (288)
                      .+....|++..+...+++|.+++...+.....+.+|.....
T Consensus       108 v~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~  148 (314)
T KOG1444|consen  108 VFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA  148 (314)
T ss_pred             HHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998877544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=91.02  E-value=1.7  Score=35.49  Aligned_cols=109  Identities=8%  Similarity=0.065  Sum_probs=84.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            6 IPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         6 ~~~~~~~~~R~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      ..-.+..++..+++.++++.+.....++.      -.+.+....+++.|++.+.-.+|-.+.++.++.+..+.+..++-.
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKl  262 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKL  262 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhC
Confidence            34456778889999988877755433211      112233446788888888888888889999999999999999999


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012           80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  114 (288)
Q Consensus        80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~  114 (288)
                      -..+-+.++++|+.+...+.++.+++..-.+-...
T Consensus       263 p~alaGlvffdap~nf~si~sillGflsg~iYava  297 (309)
T COG5070         263 PIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA  297 (309)
T ss_pred             hHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877665444

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=90.02  E-value=0.4  Score=40.32  Aligned_cols=129  Identities=11%  Similarity=0.023  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 023012          144 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA  223 (288)
Q Consensus       144 G~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~  223 (288)
                      |++.+++|+++++...+=.|+... .| +....++++....+......+..+. .    ..+.+...-|.+-..+..+-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~-gD-g~~fQw~~~~~i~~~g~~v~~~~~~-p----~f~p~amlgG~lW~~gN~~~v   73 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT-GD-GFFFQWVMCSGIFLVGLVVNLILGF-P----PFYPWAMLGGALWATGNILVV   73 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC-CC-cHHHHHHHHHHHHHHHHHHHHhcCC-C----cceeHHHhhhhhhhcCceeeh
Confidence            567889999999999999998643 34 6667777666666665555554322 1    122233333444444555555


Q ss_pred             HhhcccCCcceeehhh-hHHHHHHHHHHH-hhcc---CC--chhhHhHHHHHHHHHHHHHHhC
Q 023012          224 RGLQLEKTSKVANVQY-IEVALTQLWGMG-LSRI---AP--SFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       224 ~al~~~~~~~~~~~~~-~~pv~~~l~~~~-~~~e---~~--~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      -.+|+++-+..-.+=. .+.+.+-..+-+ +||+   .+  ++..++|.+++++|..+....|
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence            5555555554443333 355555555533 4444   22  4778999999999988776543

The region concerned is approximately 280 residues long.

>PRK02237 hypothetical protein; Provisional

Probab=89.74  E-value=2.5  Score=30.25  Aligned_cols=49  Identities=8%  Similarity=-0.035  Sum_probs=38.3

Q ss_pred             cccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheec
Q 023012           65 LPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  113 (288)
Q Consensus        65 ~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~  113 (288)
                      .+.+.+-.-+. ...+.+.+..+.+-|+|+++..++|..++++|+.++..
T Consensus        56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~  105 (109)
T PRK02237         56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY  105 (109)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence            33455544433 66677778899999999999999999999999977743

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=88.30  E-value=1.9  Score=30.74  Aligned_cols=55  Identities=11%  Similarity=0.056  Sum_probs=42.4

Q ss_pred             HHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012           60 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  114 (288)
Q Consensus        60 ~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~  114 (288)
                      -.+|-.+.+.+-.-+. ...+.+.+..+.+-|+|+++..++|..++++|+.++...
T Consensus        49 ~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   49 LTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             hhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            3345555555544433 677778888999999999999999999999999887654

; GO: 0016020 membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.07  E-value=3  Score=35.25  Aligned_cols=110  Identities=12%  Similarity=0.160  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhCCCCC-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHhhhHH
Q 023012            7 PLFETVFMRCTVTLILSYLWLRRSGQPIF-------GPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPI   79 (288)
Q Consensus         7 ~~~~~~~~R~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~P~   79 (288)
                      +..++.++.+.++.+++.......+.-..       .+.+...+.++.+..+.++..+...=++.-++..+..+...--.
T Consensus       219 ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKa  298 (367)
T KOG1582|consen  219 SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKA  298 (367)
T ss_pred             CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhH
Confidence            34566666777777766655555443211       12233456667777777777666666667777888888888889


Q ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHhhhheecccc
Q 023012           80 MASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL  116 (288)
Q Consensus        80 ~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~~  116 (288)
                      .+.+++.+++.++++.....+..+.+.|+.+=+.++.
T Consensus       299 vTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  299 VTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            9999999999999999999999999999999877764

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=86.90  E-value=0.74  Score=38.94  Aligned_cols=67  Identities=10%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHH
Q 023012          211 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  277 (288)
Q Consensus       211 ~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~  277 (288)
                      -+++-..+..+.+.++....++...++..-..+|+.+++.-+++.+++..||.|+..+.+|.+.+-.
T Consensus        92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            4455667788888888999999999999999999999999999999999999999999999887543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=85.29  E-value=4.9  Score=34.59  Aligned_cols=74  Identities=12%  Similarity=0.072  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCcceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          206 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       206 ~~l~~~gi~~~~~~~~~~~al~~~~~~~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      -.+.-.|+.+..=..+-++++++.+.+..++.-+..++|-.+++.++-=|++++.-..-..+|-+|+.+..+++
T Consensus        85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks  158 (349)
T KOG1443|consen   85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS  158 (349)
T ss_pred             HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence            34556677777777788999999999999999999999999999999999999998888888888776654443

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=85.04  E-value=2  Score=30.43  Aligned_cols=48  Identities=15%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             ceeehhhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          233 KVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       233 ~~~~~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      ..+...-.-.+.+.++.+.+-|..|+.++++|..+-++|+.++...+|
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            345566677889999999999999999999999999999777666544

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=84.73  E-value=2.7  Score=29.94  Aligned_cols=62  Identities=21%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhhcccCCcceeehhh-hHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHH
Q 023012          214 LAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT  275 (288)
Q Consensus       214 ~~~~~~~~~~~al~~~~~~~~~~~~~-~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~  275 (288)
                      ++..+..+|+.-+.+.+.+.+..+.+ +...++.+.+...-.|.+....+.|..+++.|+.+.
T Consensus        61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            46678888999999999988887766 678889999977555566788899999999998753

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=84.49  E-value=12  Score=26.58  Aligned_cols=40  Identities=13%  Similarity=-0.031  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012           76 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  115 (288)
Q Consensus        76 ~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~  115 (288)
                      .....+.+..+..-|.|+++..|+|..++++|+.++....
T Consensus        67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p  106 (109)
T COG1742          67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP  106 (109)
T ss_pred             hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence            5666777778889999999999999999999998876543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=81.81  E-value=1.3  Score=31.50  Aligned_cols=29  Identities=14%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             HHHHHHhhccCCchhhHhHHHHHHHHHHH
Q 023012          246 QLWGMGLSRIAPSFGRLVGCVLILVSVFY  274 (288)
Q Consensus       246 ~l~~~~~~~e~~~~~~~~G~~li~~g~~~  274 (288)
                      ..++.++++|++++.+..|..+++.++..
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f  105 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYF  105 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence            34567899999999999999999988764

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=81.16  E-value=4.6  Score=28.76  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhhcccchhHHHHh-hhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhee
Q 023012           53 LSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  112 (288)
Q Consensus        53 ~~~~~~~~a~~~~~~~~~~~i~~-~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~  112 (288)
                      -+...||.-+++.|.+.+..+.+ +.-.|+.+++..+..|....+.++|..+...|+.+.+
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            44567888999999999988855 6777888888876556666777889999999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.99
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.96
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.73
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.73

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.99  E-value=7.3e-10  Score=82.83  Aligned_cols=70  Identities=19%  Similarity=0.186  Sum_probs=51.8

Q ss_pred             HHHH-HHHHHHHHHHhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhCC
Q 023012          211 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  280 (288)
Q Consensus       211 ~gi~-~~~~~~~~~~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~  280 (288)
                      .+++ ..+++.+|.+++|+.+++++..+ ..+.|+++.+++++++||++++.+++|+.+|++|+++....++
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~  106 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            4444 45999999999999999999999 8999999999999999999999999999999999999877543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.96  E-value=1.2e-08  Score=73.56  Aligned_cols=100  Identities=17%  Similarity=0.105  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhHHhHhcCccccCchHHHHHHHHHHHH-HHHHHHHHH
Q 023012          145 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSIL-AFFAEVLLA  223 (288)
Q Consensus       145 ~l~~l~~~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-~~~~~~~~~  223 (288)
                      .++.+++.++-+..+...|+. ++   . .                            ..+..  ..++. ..+++.++.
T Consensus         4 ~l~l~~a~~~e~~~~~~lK~s-~~---~-~----------------------------~~~~~--~~~~~~~~~~~~~~~   48 (110)
T 3b5d_A            4 YIYLGGAILAEVIGTTLMKFS-EG---F-T----------------------------RLWPS--VGTIICYCASFWLLA   48 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cC---c-c----------------------------hHHHH--HHHHHHHHHHHHHHH
Confidence            466777888888888888873 11   0 0                            11222  24444 459999999


Q ss_pred             HhhcccCCcceeeh-hhhHHHHHHHHHHHhhccCCchhhHhHHHHHHHHHHHHHHhC
Q 023012          224 RGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  279 (288)
Q Consensus       224 ~al~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~  279 (288)
                      +++|+.|.+++..+ ..+.|+.+.+++++++||++|+.+++|..+|++|++.....+
T Consensus        49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999988 899999999999999999999999999999999999887654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.73  E-value=1.4e-08  Score=75.84  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheeccc
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  115 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~~  115 (288)
                      .++..++..+++.++.+++++.|++.+..+ ..+.|++++++++++++|++++.+++|+++.+.|++++...+
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            456677788999999999999999999999 799999999999999999999999999999999999986543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.73  E-value=2.2e-07  Score=66.95  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHH-HhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhheecc
Q 023012           44 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  114 (288)
Q Consensus        44 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i-~~~~P~~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l~~~~  114 (288)
                      .....++...+..++.+++++.|.+.+..+ ..+.|+++.+++++++||+++.+|++|+.+.+.|++++...
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            456667778899999999999999999999 68999999999999999999999999999999999988544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00