Citrus Sinensis ID: 023018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Secondary Structure (PSIPRED)
cccccccccccccccEEccccccEEEEEEcccccEEEEccccccEEEEccccccEEEEccccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccEEEEEccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
mnnpihneveddqrevfldesdiihevtvddedlpdvdddddpgsdaenteqpddsthifsghsdevysvacsptdatlvatgggddkgffwrinqgdwaseiqghkdsvsslafsmdgqllasggldglvqiwdpssgnlkctlegpgggvewvswhprghivlagsedstvWMWNADRAAYLNMfsghgssvtcgdftpdgktictgsddatlrvwnpksgenihvirghpyhtegltcltisadstlalsgskdgsvhMVNITTGKVcclnfqytcvaydldfvl
Flexible Loop (DISEMBL)
mnnpihneveddqreVFLDESDIIhevtvddedlpdvDDDDDPGSdaenteqpddstHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Low Complexity Region (SEG)
MNNPIHNEVEDDQREVFLDESDIIHEVTVddedlpdvdddddpgsdAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Disordered region (IsUnstruct)
**********************II*****************************************************************FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV*
Disordered Region (DISOPRED)
*NNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Disordered Region (DISEMBL)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDD***************DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Disordered Region (DISPRO)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q7YR70	435	Angio-associated migrator	yes	no	0.760	0.503	0.405	7e-43
Q3SZK1	434	Angio-associated migrator	yes	no	0.760	0.504	0.405	8e-43
Q5RCG7	434	Angio-associated migrator	yes	no	0.760	0.504	0.405	1e-42
Q13685	434	Angio-associated migrator	yes	no	0.760	0.504	0.405	1e-42
O13982	399	Uncharacterized WD repeat	yes	no	0.902	0.651	0.316	4e-35
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.697	0.119	0.351	3e-31
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.743	0.140	0.356	4e-30
Q00808	1356	Vegetative incompatibilit	yes	no	0.756	0.160	0.357	4e-29
P49695	742	Probable serine/threonine	yes	no	0.708	0.274	0.339	5e-28
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.763	0.174	0.323	4e-25

>sp|Q7YR70|AAMP_CANFA Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 77  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 136

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 137 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 194

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 195 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 253

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct: 254 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKV 295

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.
Canis familiaris (taxid: 9615)

>sp|Q3SZK1|AAMP_BOVIN Angio-associated migratory cell protein OS=Bos taurus GN=AAMP PE=2 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G +IHV
Sbjct: 194 ADGNTWMWKVP-TGDCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 294

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Bos taurus (taxid: 9913)

>sp|Q5RCG7|AAMP_PONAB Angio-associated migratory cell protein OS=Pongo abelii GN=AAMP PE=2 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct: 253 LKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 294

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Pongo abelii (taxid: 9601)

>sp|Q13685|AAMP_HUMAN Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKD
Sbjct: 76  SMEGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKD 135

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
           SV+   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+
Sbjct: 136 SVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFE--AGDLEWMEWHPRAPVLLAGT 193

Query: 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
            D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV
Sbjct: 194 ADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHV 252

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           ++G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct: 253 LKGTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKV 294

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Homo sapiens (taxid: 9606)

>sp|O13982|YEC8_SCHPO Uncharacterized WD repeat-containing protein C25H1.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25H1.08c PE=4 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 15/275 (5%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDV----DDDDDPGSDAENTEQPDDSTHIFSGHSD 65
           E++ +E+++ E+++  EV  D++ L D     D+ +   +D  N    D S   F  H D
Sbjct: 4   EEENQELYIAENEV-EEVIKDNDKLMDQGVTEDEAEQEQNDTMNNMVMDMSVQGFFEHKD 62

Query: 66  EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
            V+SV+ +P  + L A+GGGDD G+ W I  G+   ++ GHKDS+ ++ +S DG  +A+G
Sbjct: 63  SVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQICQLTGHKDSIVAIDWSFDGTYIATG 122

Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
           G+D  V++W  S+G    T       + W+SWHP+G  + AG  D ++WMW+      + 
Sbjct: 123 GMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHPKGLFLAAGCNDGSIWMWSLPSGKVVQ 182

Query: 186 MFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSG--------ENIHVIRGHPYH 235
           +  GH + V  G F P   GK + T  D  TL VWNP +G        ++     G+   
Sbjct: 183 VMYGHTAPVNAGKFIPPGVGKRLATVDDSGTLIVWNPATGAPECRMSSDDHRFDPGNEET 242

Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G T    +A+  +   G   G V +VNI +  +
Sbjct: 243 AAGWTSFDCNAEGNVLFLGGSSGKVKVVNINSSHI 277

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  135 bits (340), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 111/205 (54%), Gaps = 4/205 (1%)

Query: 60   FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             +GH D VYSV+ SP D   +A+GG D     W+ + G     I GH+ +V+++ FS DG
Sbjct: 1109 LNGHEDAVYSVSFSP-DGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDG 1167

Query: 120  QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
            + LAS   D  +++WD +SG L  TL G   GV  V + P G  + AGSED TV +W+  
Sbjct: 1168 KNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQ 1227

Query: 180  RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
                L   +GH   V    F+PDGKT+ + S D T+++W    G+ +  ++G   H + +
Sbjct: 1228 DGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKG---HNDSV 1284

Query: 240  TCLTISADSTLALSGSKDGSVHMVN 264
              +  S+D     S S+D ++ + N
Sbjct: 1285 WDVNFSSDGKAIASASRDNTIKLWN 1309

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 119/219 (54%), Gaps = 5/219 (2%)

Query: 58   HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
            +IF GH+  V SV  S +D  ++A+G  D     W I+ G+    +QGH   V S+ FS 
Sbjct: 1026 YIFQGHTSCVRSVVFS-SDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSP 1084

Query: 118  DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            DG +LASGG D +V++WD SSGN   TL+G    V ++ + P G  +  GS D  V +W+
Sbjct: 1085 DGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWD 1144

Query: 178  ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                  L    GH + V    F+PDG T+ +GS D T+R+W+  S + +++++G   HT 
Sbjct: 1145 ISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQG---HTS 1201

Query: 238  GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ 276
             +  +  + D +   SGS D +V +  I + K  C  FQ
Sbjct: 1202 WVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC-TFQ 1239

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 115/232 (49%), Gaps = 14/232 (6%)

Query: 57   THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
            T    GH   V SV  SP D   VA+G  D     W    G     ++GH DSV S+AFS
Sbjct: 1044 TQTLEGHGGWVQSVVFSP-DGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFS 1102

Query: 117  MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
             DGQ +ASG +DG ++IWD +SG    TLEG GG V  V++ P G  V +GS D T+ +W
Sbjct: 1103 PDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIW 1162

Query: 177  NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
            +A          GHG  V    F+PDG+ + +GS D T+++W+  SG     + GH    
Sbjct: 1163 DAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWV 1222

Query: 237  EGLTCLTISADSTLALSGSKDGSVHMVNITTG----------KVCCLNFQYT 278
            +    +  S D     SGS D ++ + +  +G             CL+F YT
Sbjct: 1223 QS---VAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSFDYT 1271

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 5/209 (2%)

Query: 59  IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
           +F GH+  V  +A SP D ++VA+G  D     W +  G   + ++GH D V ++AFS D
Sbjct: 538 VFEGHTHYVLDIAFSP-DGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPD 596

Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
           G ++ASG  DG +++WD ++G  +  L+ P   V  +++ P G +++ GS DSTV +W+ 
Sbjct: 597 GSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDV 655

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
                L+ F GH   V    F+PDG  + +GSDD T+R+W+  + E    + G   HTE 
Sbjct: 656 ASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEG---HTEP 712

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITT 267
           +  +    + T   S S+DG++ +  I T
Sbjct: 713 VHSVAFHPEGTTLASASEDGTIRIWPIAT 741

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 58   HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
             I   H+D VY+V   P    ++ATG  D     W I+ G     +  H D +  +A+S 
Sbjct: 1014 QILLEHTDWVYAVVFHP-QGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP 1072

Query: 118  DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            DGQLLAS   D  V++WD  +G     L G    V    + P G I+   S D TV +W+
Sbjct: 1073 DGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWD 1132

Query: 178  ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
              +   L   +GH + V    F+PDGK + + S D T+R+W+  +G+  H+  G   HT 
Sbjct: 1133 WQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIG---HTH 1189

Query: 238  GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYD 283
             ++ +  S D  +  SGS+D +V + N+ TG+  CL        Y+
Sbjct: 1190 LVSSVAFSPDGEVVASGSQDQTVRIWNVKTGE--CLQILRAKRLYE 1233

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
152926156	408	transducin family protein [Carica papaya	0.923	0.651	0.785	1e-121
449441201	392	PREDICTED: vegetative incompatibility pr	0.909	0.668	0.765	1e-116
449503766	392	PREDICTED: vegetative incompatibility pr	0.909	0.668	0.765	1e-116
225444924	391	PREDICTED: angio-associated migratory ce	0.927	0.682	0.762	1e-110
147771302	391	hypothetical protein VITISV_007962 [Viti	0.927	0.682	0.748	1e-109
297738669	393	unnamed protein product [Vitis vinifera]	0.927	0.679	0.757	1e-109
225460494	391	PREDICTED: angio-associated migratory ce	0.927	0.682	0.744	1e-109
30698820	407	transducin/WD-40 repeat-containing prote	0.902	0.638	0.712	1e-105
224146457	390	predicted protein [Populus trichocarpa]	0.909	0.671	0.724	1e-104
224135435	378	predicted protein [Populus trichocarpa]	0.878	0.669	0.743	1e-104

>gi|152926156|gb|ABS32230.1| transducin family protein [Carica papaya] gi|164522082|gb|ABY60781.1| transducin family protein [Carica papaya]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/270 (78%), Positives = 237/270 (87%), Gaps = 4/270 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P   E  DDQ EVF+DESD+IHE TVD+EDLPD +DD    SDAEN E+PDDS HIF
Sbjct: 1   MNSPPPEE--DDQGEVFIDESDVIHEFTVDEEDLPDAEDD--ASSDAENIEEPDDSMHIF 56

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSPTDA LVATGGGDDKGF W+I +GDW SE+ GHKDSVS LAFS DGQ
Sbjct: 57  TGHTGELYAVACSPTDARLVATGGGDDKGFLWKIGRGDWGSELLGHKDSVSCLAFSTDGQ 116

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
            LASGGLDGLVQIWD SSGN+KC LEGP  G+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 117 FLASGGLDGLVQIWDASSGNIKCALEGPEKGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 176

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
            AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR+WNP+SGENIHV++GHPYHTEGLT
Sbjct: 177 GAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRIWNPRSGENIHVVKGHPYHTEGLT 236

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKV 270
           CL +S+DS+LAL+GSKD SVH+VNI TGKV
Sbjct: 237 CLAMSSDSSLALTGSKDSSVHIVNIVTGKV 266

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441201|ref|XP_004138371.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/264 (76%), Positives = 231/264 (87%), Gaps = 2/264 (0%)

Query: 7   NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
           +E EDD  EVFLDE+DIIHEV VD+EDLPD  D++  GSD E  ++ DDS H F+GH+ E
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG 
Sbjct: 65  VYTVVCSPVDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
            DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR  YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
           FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244

Query: 247 DSTLALSGSKDGSVHMVNITTGKV 270
           DSTLAL+GSKDGSVH+VNI TGKV
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKV 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503766|ref|XP_004162166.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/264 (76%), Positives = 231/264 (87%), Gaps = 2/264 (0%)

Query: 7   NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDE 66
           +E EDD  EVFLDE+DIIHEV VD+EDLPD  D++  GSD E  ++ DDS H F+GH+ E
Sbjct: 7   HEEEDDHGEVFLDEADIIHEVPVDEEDLPDAVDEE--GSDDEYFDEADDSVHTFTGHTGE 64

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           VY+V CSP DATLVATGGGDDKGF W+I +GD+A E+ GHKDSVSSLAFS DGQLLASG 
Sbjct: 65  VYTVVCSPLDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGS 124

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
            DG++QIWD SSGNLKCTLEGPGGG+EWV WHPRGH+VLAGSEDST WMWNADR  YLN+
Sbjct: 125 FDGIIQIWDTSSGNLKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNI 184

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
           FSGHG+SVTCGDFTPDGK ICTGSDDAT+R+WNP+SGENIHV+RGHPYHTEGLT L +++
Sbjct: 185 FSGHGASVTCGDFTPDGKIICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTS 244

Query: 247 DSTLALSGSKDGSVHMVNITTGKV 270
           DSTLAL+GSKDGSVH+VNI TGKV
Sbjct: 245 DSTLALTGSKDGSVHIVNIATGKV 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444924|ref|XP_002282186.1| PREDICTED: angio-associated migratory cell protein-like [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/270 (76%), Positives = 234/270 (86%), Gaps = 3/270 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D    DAE+ E+ DDS HIF
Sbjct: 1   MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP D  LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FSMDGQ
Sbjct: 58  TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGHKDSVFSLDFSMDGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
            AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEGLT
Sbjct: 178 GAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKV 270
           CL I++DSTLAL+GSKD SVH+VNITTGKV
Sbjct: 238 CLAITSDSTLALTGSKDSSVHVVNITTGKV 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771302|emb|CAN60774.1| hypothetical protein VITISV_007962 [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/270 (74%), Positives = 236/270 (87%), Gaps = 3/270 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D    DAE+ E+ DDS HIF
Sbjct: 1   MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP DA LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58  TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DGLV+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGLVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
           +AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKV 270
           CL I++DSTLAL+GSKD SVH+VNI TGKV
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKV 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738669|emb|CBI27914.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/272 (75%), Positives = 234/272 (86%), Gaps = 5/272 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN P +++ ++DQ +VFLDE+DI+ E+ VDDEDLPD +D D    DAE+ E+ DDS HIF
Sbjct: 1   MNTPANHDEDEDQGDVFLDENDIVLEINVDDEDLPDAEDAD---DDAEDVEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMD 118
           +GH+ E+Y+VACSP D  LVATGGGDDKGF W+I  GDWA E+ G  HKDSV SL FSMD
Sbjct: 58  TGHTGELYTVACSPIDPRLVATGGGDDKGFIWKILDGDWAFELGGMCHKDSVFSLDFSMD 117

Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
           GQLLASG  DGLV+IWD SSG+LKCTLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNA
Sbjct: 118 GQLLASGSFDGLVKIWDASSGDLKCTLEGPGGGIEWVRWHPRGHVVLAGSEDCTVWMWNA 177

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
           DR AYLNMFSGH SSVTCGDFTPDGKTICTGSDDATLR+WNP SGENIHV+RGHPYHTEG
Sbjct: 178 DRGAYLNMFSGHASSVTCGDFTPDGKTICTGSDDATLRIWNPSSGENIHVVRGHPYHTEG 237

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           LTCL I++DSTLAL+GSKD SVH+VNITTGKV
Sbjct: 238 LTCLAITSDSTLALTGSKDSSVHVVNITTGKV 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460494|ref|XP_002274841.1| PREDICTED: angio-associated migratory cell protein [Vitis vinifera] gi|296088039|emb|CBI35322.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/270 (74%), Positives = 235/270 (87%), Gaps = 3/270 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
           MN+P H++ ++DQ +VF+DE+D++ E+TVDDEDLPDV+ +D    DAE+ E+ DDS HIF
Sbjct: 1   MNDPAHHDEDEDQGDVFIDENDVVQEITVDDEDLPDVEGED---DDAEDFEEADDSMHIF 57

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           +GH+ E+Y+VACSP DA LVATGGGDDKGF W+I  GDWA E+ GHKDSV SL FS DGQ
Sbjct: 58  TGHTGELYTVACSPMDARLVATGGGDDKGFIWKIFDGDWAFELGGHKDSVCSLDFSADGQ 117

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LLASG  DG V+IWD SSG+LK TLEGPGGG+EWV WHPRGH+VLAGSED TVWMWNADR
Sbjct: 118 LLASGSFDGFVKIWDASSGDLKGTLEGPGGGIEWVRWHPRGHLVLAGSEDCTVWMWNADR 177

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
           +AYLNMFSGH SSVTCG+FTPDGKTICTGSDDATLR+WNP+SGEN HV+RGHPYHTEGLT
Sbjct: 178 SAYLNMFSGHASSVTCGNFTPDGKTICTGSDDATLRIWNPRSGENTHVVRGHPYHTEGLT 237

Query: 241 CLTISADSTLALSGSKDGSVHMVNITTGKV 270
           CL I++DSTLAL+GSKD SVH+VNI TGKV
Sbjct: 238 CLAITSDSTLALTGSKDSSVHIVNIATGKV 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698820|ref|NP_177329.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|19347844|gb|AAL86002.1| unknown protein [Arabidopsis thaliana] gi|25054983|gb|AAN71963.1| unknown protein [Arabidopsis thaliana] gi|332197118|gb|AEE35239.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/261 (71%), Positives = 223/261 (85%), Gaps = 1/261 (0%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
           E+D+ E+FL ESD++ E+ VD+EDLP+ DDDD    D E  ++ DDS H F+GH  E+Y+
Sbjct: 17  EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMD-DDGEQFDENDDSVHTFTGHKGELYA 75

Query: 70  VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
           +ACSPTDATLVATGGGDDK F W+I  GDWA+E+ GHKDSVS LAFS DGQLLASGGLDG
Sbjct: 76  LACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDG 135

Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
           +VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+ AYLNMFSG
Sbjct: 136 VVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSG 195

Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
           H  +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLTCL I+++S+
Sbjct: 196 HNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLTCLDINSNSS 255

Query: 250 LALSGSKDGSVHMVNITTGKV 270
           LA+SGSKDGSVH+VNI TGKV
Sbjct: 256 LAISGSKDGSVHIVNIVTGKV 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146457|ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|222862888|gb|EEF00395.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/269 (72%), Positives = 228/269 (84%), Gaps = 7/269 (2%)

Query: 2   NNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFS 61
           N  +H+E EDDQ EVFLD+SDII EV VD+EDLPD         + ++ +  DDS HIF+
Sbjct: 5   NRSLHDEEEDDQGEVFLDDSDIIDEVAVDEEDLPDA-------DEDDDDDDTDDSMHIFT 57

Query: 62  GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
           GH+ E+Y+V+CSPTD  LVATGGGDDKGF W+I  GDWASE++GHKDSVS LAFS DGQL
Sbjct: 58  GHTGELYTVSCSPTDPLLVATGGGDDKGFLWKIGLGDWASELKGHKDSVSCLAFSSDGQL 117

Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181
           LASGG DGLVQIWD SSGN KC LEGP  G+EWV WHP+GH+VLAGSED +VWMWNADR 
Sbjct: 118 LASGGFDGLVQIWDASSGNHKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKSVWMWNADRG 177

Query: 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
           AYLN F+GH +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+GLTC
Sbjct: 178 AYLNSFTGHEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTC 237

Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKV 270
           L +S+DSTLA++GSKD SVH+VNIT+G+V
Sbjct: 238 LALSSDSTLAITGSKDNSVHIVNITSGRV 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135435|ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|222835587|gb|EEE74022.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/261 (74%), Positives = 226/261 (86%), Gaps = 8/261 (3%)

Query: 10  EDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYS 69
           EDDQ EVFLD+SDIIHEVTVD+EDLPD        +D ++ +  DDS HIF+GH+ E+Y+
Sbjct: 2   EDDQGEVFLDDSDIIHEVTVDEEDLPD--------ADDDDNDDTDDSMHIFTGHTSELYT 53

Query: 70  VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129
           VACSP D  LVATGGGDDKGF W+I  GDWA+E++GHK+SVSSL FS DGQLLASGG DG
Sbjct: 54  VACSPADPLLVATGGGDDKGFLWKIGLGDWAAELKGHKESVSSLTFSSDGQLLASGGFDG 113

Query: 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
           +VQIWD SSGNLKC LEGP  G+EWV WHP+GH+VLAGSED TVWMWNAD+ AYLN F+G
Sbjct: 114 IVQIWDASSGNLKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAG 173

Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249
           H +SVTCGDFTPDGKTICTGSDDA+LR+WNPKSGENIHV+RGHPYHT+GLTCL +S+DST
Sbjct: 174 HEASVTCGDFTPDGKTICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDST 233

Query: 250 LALSGSKDGSVHMVNITTGKV 270
           LA++GSKD SVH+VNITTG+V
Sbjct: 234 LAITGSKDNSVHIVNITTGRV 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2012971	407	AT1G71840 "AT1G71840" [Arabido	0.927	0.656	0.666	4.4e-100
UNIPROTKB|F1ND84	411	AAMP "Uncharacterized protein"	0.774	0.542	0.393	3.4e-45
UNIPROTKB|F1P1L6	408	AAMP "Uncharacterized protein"	0.774	0.546	0.393	3.4e-45
UNIPROTKB|Q3SZK1	434	AAMP "Angio-associated migrato	0.753	0.5	0.409	1.5e-44
UNIPROTKB|Q7YR70	435	AAMP "Angio-associated migrato	0.753	0.498	0.409	1.9e-44
UNIPROTKB|Q5RCG7	434	AAMP "Angio-associated migrato	0.753	0.5	0.409	2.4e-44
UNIPROTKB|Q13685	434	AAMP "Angio-associated migrato	0.753	0.5	0.409	2.4e-44
RGD|1306281	435	Aamp "angio-associated, migrat	0.753	0.498	0.409	2.4e-44
ZFIN|ZDB-GENE-040426-2370	420	aamp "angio-associated, migrat	0.760	0.521	0.385	7.5e-41
UNIPROTKB|I3L988	411	AAMP "Uncharacterized protein"	0.760	0.532	0.393	7.8e-39

TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 180/270 (66%), Positives = 216/270 (80%)

Query:     1 MNNPIHNEVEDDQREVFLDESDIIHEVTVXXXXXXXXXXXXXXXXXAENTEQPDDSTHIF 60
             MNN +  E E+D+ E+FL ESD++ E+ V                  E  ++ DDS H F
Sbjct:    10 MNN-LAME-EEDEGEIFLGESDVLREIDVDEEDLPEADDDDMDDD-GEQFDENDDSVHTF 66

Query:    61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
             +GH  E+Y++ACSPTDATLVATGGGDDK F W+I  GDWA+E+ GHKDSVS LAFS DGQ
Sbjct:    67 TGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQ 126

Query:   121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
             LLASGGLDG+VQI+D SSG LKC L+GPG G+EWV WHPRGHIVLAGSED ++WMWNAD+
Sbjct:   127 LLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWNADK 186

Query:   181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240
              AYLNMFSGH  +VTCGDFTPDGK ICTGSDDA+L VWNPK+ E+IH+++GHPYHTEGLT
Sbjct:   187 EAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPYHTEGLT 246

Query:   241 CLTISADSTLALSGSKDGSVHMVNITTGKV 270
             CL I+++S+LA+SGSKDGSVH+VNI TGKV
Sbjct:   247 CLDINSNSSLAISGSKDGSVHIVNIVTGKV 276

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1ND84 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 89/226 (39%), Positives = 126/226 (55%)

Query:    48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
             +  E  DDS   FS HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHK
Sbjct:    52 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 111

Query:   108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
             DSV+   FS D   +A+G + GL+++W   +     + E   G +EW+ WHP+ H++LAG
Sbjct:   112 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 169

Query:   168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
             + D   WMW    +     F G     TCG   PDGK    G +D T+R+W+ K G ++H
Sbjct:   170 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 228

Query:   228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273
             V++G   H + LTC+  + D +L L+GS D    +VN  TGKV C+
Sbjct:   229 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVVCV 274

GO:0009986 "cell surface" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

UNIPROTKB|F1P1L6 AAMP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 89/226 (39%), Positives = 126/226 (55%)

Query:    48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
             +  E  DDS   FS HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHK
Sbjct:    49 DGMEAQDDSEVTFSLHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHK 108

Query:   108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
             DSV+   FS D   +A+G + GL+++W   +     + E   G +EW+ WHP+ H++LAG
Sbjct:   109 DSVTCAGFSHDSVFVATGDMSGLIKVWRVDTKEEAWSFEV--GDLEWMEWHPQAHVLLAG 166

Query:   168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
             + D   WMW    +     F G     TCG   PDGK    G +D T+R+W+ K G ++H
Sbjct:   167 TADGNSWMWKIP-SGDCKTFQGPACPATCGKILPDGKRAVVGYEDGTMRIWDLKQGTSLH 225

Query:   228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273
             V++G   H + LTC+  + D +L L+GS D    +VN  TGKV C+
Sbjct:   226 VLKGQDGHQDPLTCVASNQDGSLILTGSVDCHAKLVNSATGKVVCV 271

GO:0009986 "cell surface" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEA

UNIPROTKB|Q3SZK1 AAMP "Angio-associated migratory cell protein" [Bos taurus (taxid:9913)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 90/220 (40%), Positives = 123/220 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G +IHV++
Sbjct:   196 GNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNSIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 294

GO:0045766 "positive regulation of angiogenesis" evidence=NAS

GO:0010595 "positive regulation of endothelial cell migration" evidence=IMP

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|Q7YR70 AAMP "Angio-associated migratory cell protein" [Canis lupus familiaris (taxid:9615)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 90/220 (40%), Positives = 122/220 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   139 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 255

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAQLVSATTGKV 295

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|Q5RCG7 AAMP "Angio-associated migratory cell protein" [Pongo abelii (taxid:9601)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 90/220 (40%), Positives = 122/220 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   255 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 294

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0014909 "smooth muscle cell migration" evidence=ISS

UNIPROTKB|Q13685 AAMP "Angio-associated migratory cell protein" [Homo sapiens (taxid:9606)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 90/220 (40%), Positives = 122/220 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    78 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 137

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   138 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 195

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   196 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLK 254

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   255 GTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKV 294

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEP

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=IDA

GO:0001525 "angiogenesis" evidence=NAS

GO:0008201 "heparin binding" evidence=TAS

RGD|1306281 Aamp "angio-associated, migratory cell protein" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 90/220 (40%), Positives = 122/220 (55%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    79 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 138

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
             +   FS D  L+A+G + GL+++W   +     + E   G +EW+ WHPR  ++LAG+ D
Sbjct:   139 TCAGFSHDSTLVATGDMSGLLKVWQVETKEEVWSFEA--GDLEWMEWHPRAPVLLAGTAD 196

Query:   171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
                WMW          F G     TCG   PDGK    G +D T+R+W+ K G  IHV++
Sbjct:   197 GNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNPIHVLK 255

Query:   231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
             G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   256 GTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 295

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0014909 "smooth muscle cell migration" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-2370 aamp "angio-associated, migratory cell protein" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 86/223 (38%), Positives = 121/223 (54%)

Query:    50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS 109
             +EQ DDS    S H+  V+ V   P   +L  +GG DD+ F WR+  G+   E  GHKDS
Sbjct:    69 SEQ-DDSELTLSRHTGSVFCVRLDPLTNSLAMSGGEDDRAFLWRVCDGEVLLECTGHKDS 127

Query:   110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
             V  + FS D  L ASG + G++++W         + E   G +EW+ WHP   ++LAG  
Sbjct:   128 VVCVGFSSDSALAASGDMSGVIRVWSVEKREEVWSAEV--GDLEWLEWHPCAPVLLAGVA 185

Query:   170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
             D +VWMW     A    F   G   TCG   PDGK    G +D +LR+W+ K G  I+VI
Sbjct:   186 DGSVWMWKLPSGA-CRTFQSPGCQTTCGRILPDGKRAIVGYEDGSLRLWDLKQGTAIYVI 244

Query:   230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC 272
             +G   H   LTC++ + +  L LSGS DG   +++ ++GKV C
Sbjct:   245 KGQDGHRGALTCVSSNQEGALLLSGSVDGQAKLISSSSGKVLC 287

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3L988 AAMP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 89/226 (39%), Positives = 119/226 (52%)

Query:    51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
             E PDDS   F+ HS  V+ V+  P   TL  TGG DDK F WR++ G+   E  GHKDSV
Sbjct:    70 EGPDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSV 129

Query:   111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV---EWVS--W-HPRGHIV 164
             +   FS D  L+A+G + GL+++W   +     + E     V   EW S  W   RG + 
Sbjct:   130 TCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEVRSSEWDSAPWGRGRGPVX 189

Query:   165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
             LAG+ D   WMW          F G     TCG   PDGK    G +D T+R+W+ K G 
Sbjct:   190 LAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGN 248

Query:   225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
              I+V++G   H   LTC+  + D +L L+GS D    +V+ TTGKV
Sbjct:   249 AIYVLKGTEGHQGPLTCVATNQDGSLILTGSVDCQAKLVSATTGKV 294

GO:0014909 "smooth muscle cell migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001771001	SubName- Full=Chromosome chr18 scaffold_121, whole genome shotgun sequence; (391 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00010426001	SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa)			•						0.437
	GSVIVG00018072001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa)			•						0.431

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-47
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-44
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-37
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00017	287	smart00017, OSTEO, Osteopontin	8e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  158 bits (402), Expect = 5e-47
 Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
                 GH+  V  VA SP D  L+ATG GD     W +  G+    ++GH   V  +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175
           S DG  LASG  D  +++WD  +G    TL G    V  V++ P G I+ + S D T+ +
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
           W+ +    L    GH   V    F+PDG  + + S D T+++W+ ++G+ +  + G   H
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---H 176

Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273
           T  +  +  S D    LS S DG++ + +++TGK    
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  152 bits (385), Expect = 2e-44
 Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 4/204 (1%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
               +GH+  V SVA SP D  ++++   D     W +  G   + ++GH D V+S+AFS
Sbjct: 86  VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
            DG  +AS   DG +++WD  +G    TL G  G V  V++ P G  +L+ S D T+ +W
Sbjct: 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
           +      L    GH + V    F+PDG  + +GS+D T+RVW+ ++GE +  + G   HT
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---HT 261

Query: 237 EGLTCLTISADSTLALSGSKDGSV 260
             +T L  S D     SGS DG++
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  145 bits (368), Expect = 5e-42
 Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 52  QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
           +  +      GH+  V  VA S  D T +A+G  D     W +  G+    + GH   VS
Sbjct: 39  ETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
           S+AFS DG++L+S   D  +++WD  +G    TL G    V  V++ P G  V + S+D 
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           T+ +W+      +   +GH   V    F+PDG+ + + S D T+++W+  +G+ +  +RG
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271
           H     G+  +  S D  L  SGS+DG++ + ++ TG+  
Sbjct: 218 H---ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  133 bits (337), Expect = 2e-37
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 1/163 (0%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
                GH+D V SVA SP   T VA+   D     W +  G   + + GH   V+S+AFS
Sbjct: 128 LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
            DG+ L S   DG +++WD S+G    TL G   GV  V++ P G+++ +GSED T+ +W
Sbjct: 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           +      +   SGH +SVT   ++PDGK + +GS D T+R+W+
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (284), Expect = 9e-29
 Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GHS+ V S+A SP    L +    D     W +  G   S + GH D VSSLAFS 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208

Query: 118 DGQ-LLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175
           DG  L+ASG  DG +++WD S+G  L+ TL G    V   S+ P G ++ +GS D T+ +
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRL 267

Query: 176 WNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
           W+   ++  L   SGH SSV    F+PDGK + +GS D T+R+W+ ++G+ +  +     
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL-KG 326

Query: 235 HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK 269
           H   ++ L+ S D S L   GS DG++ + ++ TGK
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 10/236 (4%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLA 114
                +GH+D V S+A SP    L+A+G  D     W ++ G    S + GH DSV S +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-S 248

Query: 115 FSMDGQLLASGGLDGLVQIWD-PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
           FS DG LLASG  DG +++WD  SS +L  TL G    V  V++ P G ++ +GS D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 174 WMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIR 230
            +W+ +  +        GH   V+   F+PDG  + +G SDD T+R+W+ ++G+ +  + 
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286
           GH      +  ++ S D  +  SGS DG+V + +++TG +      +T     LDF
Sbjct: 369 GH----SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.5 bits (223), Expect = 1e-20
 Identities = 71/181 (39%), Positives = 97/181 (53%), Gaps = 5/181 (2%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGH 106
           +           SGHS  V SVA SP    L A+G  D     W +  G   S   ++GH
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL-ASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 107 KDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
           +  VSSL+FS DG LL SGG  DG +++WD  +G    TLEG    +  VS+ P G +V 
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS-VSFSPDGRVVS 386

Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
           +GS D TV +W+    + L    GH S VT  DF+PDGK++ +GS D T+R+W+ K+   
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Query: 226 I 226
            
Sbjct: 447 S 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 11/179 (6%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEWV 155
             ++GH+DS++S+AFS DG+LL SG  DG +++WD  +G     +L+   +     +   
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 156 SWHPRGHIVLAGSEDSTVWMWN-ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA 213
           S      ++ + S D TV +W+ +     +    GH  SVT   F+PDGK + +GS  D 
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVC 271
           T+++W+ ++G+ +  + G   HT+ ++ L  S D   L  SGS DG++ + +++TGK+ 
Sbjct: 179 TIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.5 bits (171), Expect = 9e-14
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 13/153 (8%)

Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GH   V S++ SP  + LV+ G  D     W +  G     ++GH  +V S++FS DG
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDG 382

Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           ++++SG  DG V++WD S+G+L   L+G    V  + + P G  + +GS D+T+ +W+  
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
                       +S+    F+PDGK + + S D
Sbjct: 443 ------------TSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 14/191 (7%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
              +  S+ SL  S  G LL +   D LV + D SS      L G    +  +++ P G 
Sbjct: 23  PSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGE 78

Query: 163 IVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDF-TPDGKTI--CTGSDDATLRV 217
           ++L+GS D T+ +W+ D       ++   H SSV+     +PDG +I   + S D T+++
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 218 WNPKS-GENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVCCLNF 275
           W+  + G+ I  + G   H+E +T L  S D   LA   S DG++ + ++ TGK      
Sbjct: 139 WDLSTPGKLIRTLEG---HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195

Query: 276 QYTCVAYDLDF 286
            +T     L F
Sbjct: 196 GHTDPVSSLAF 206

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
            ++GH   V+S+AFS DG LLASG  DG V++WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
             ++GH   V+S+AFS DG+ LASG  DG +++WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           L    GH   VT   F+PDG  + +GSDD T+RVW+
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           L    GH   VT   F+PDGK + +GSDD T+++W+
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 105 GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCT-------LEGPGGGVEWVS 156
           G +  +  +AF+  D Q L +   DG +  W      L          L+G    V  VS
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 157 WHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
           +HP    VLA +  D  V +W+ +R   + +   H   +T  ++  DG  +CT S D  L
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 216 RVWNPKSGENIHVIRGH 232
            + +P+ G  +  +  H
Sbjct: 193 NIIDPRDGTIVSSVEAH 209

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query: 62  GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
           GH+ +V  V+  P+   ++A+ G D     W + +G     I+ H D ++SL +++DG L
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182

Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           L +   D  + I DP  G +  ++E     
Sbjct: 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 63  HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQL 121
           H   V+S+  S  D TL+A+G  D     W INQG     I+  K ++  + F  + G+ 
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRS 632

Query: 122 LASGGLDGLVQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
           LA G  D  V  +D  +  L  CT+ G    V +V +     +V + S D+T+ +W+   
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDLSM 691

Query: 181 AAY------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           +        L+ F GH +       +     I TGS+   + V++
Sbjct: 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           SG L  TL+G  G V  V++ P G  + +GS+D T+ +W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           G L  TL+G  G V  V++ P G+++ +GS+D TV +W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|214472 smart00017, OSTEO, Osteopontin

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 24/75 (32%), Positives = 35/75 (46%)

Query: 8   EVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEV 67
           E +D ++E    +S+  HE T D +D  D D  DD  +D+++ E  DDS      H  + 
Sbjct: 49  ETDDFKQETLPSKSNESHEHTDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDESHHSDE 108

Query: 68  YSVACSPTDATLVAT 82
             V   PTDA     
Sbjct: 109 SDVTDFPTDAPATDV 123

Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone. Length = 287

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 94  INQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS----------GNLKC 143
           + QGD    +    + V ++ F  DG+  A+ G++  ++I++  S            ++ 
Sbjct: 474 LKQGD----LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL 529

Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-D 202
                  G+ W S+      V + + +  V +W+  R+  +     H   V   D++  D
Sbjct: 530 ASRSKLSGICWNSYIKSQ--VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587

Query: 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVH 261
              + +GSDD ++++W+   G +I  I+        + C+   ++S  +L+ GS D  V+
Sbjct: 588 PTLLASGSDDGSVKLWSINQGVSIGTIKT----KANICCVQFPSESGRSLAFGSADHKVY 643

Query: 262 MVNITTGKV--CCLNFQYTCVAY 282
             ++   K+  C +      V+Y
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSY 666

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 13/98 (13%)

Query: 102 EIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIW-----DPSSGNLK---CTLEGPGGGV 152
           +++GH  S+  L F+    ++LASG  D  +++W     D S   +K   C L+G    +
Sbjct: 69  KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128

Query: 153 EWVSWHPRGHIVLAGSE-DSTVWMW---NADRAAYLNM 186
             + W+P  + ++  S  DS V +W   N  RA  +NM
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.81
KOG2139	445	consensus WD40 repeat protein [General function pr	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
PRK03629	429	tolB translocation protein TolB; Provisional	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
PRK04922	433	tolB translocation protein TolB; Provisional	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG2321	703	consensus WD40 repeat protein [General function pr	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
PRK01029	428	tolB translocation protein TolB; Provisional	99.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
PRK00178	430	tolB translocation protein TolB; Provisional	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG4227	609	consensus WD40 repeat protein [General function pr	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
PRK04792	448	tolB translocation protein TolB; Provisional	99.64
KOG4547	541	consensus WD40 repeat-containing protein [General	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.64
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG1334	559	consensus WD40 repeat protein [General function pr	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.47
PRK04043	419	tolB translocation protein TolB; Provisional	99.46
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.44
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.4
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.4
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.35
KOG1334	559	consensus WD40 repeat protein [General function pr	99.35
KOG2315	566	consensus Predicted translation initiation factor	99.33
PRK04043	419	tolB translocation protein TolB; Provisional	99.32
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.32
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.31
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.28
KOG2695	425	consensus WD40 repeat protein [General function pr	99.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.28
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
COG4946	668	Uncharacterized protein related to the periplasmic	99.27
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.23
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.23
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.22
KOG2695	425	consensus WD40 repeat protein [General function pr	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.14
KOG2314	698	consensus Translation initiation factor 3, subunit	99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.99
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.99
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.98
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.93
KOG2314	698	consensus Translation initiation factor 3, subunit	98.91
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.88
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.8
COG3391	381	Uncharacterized conserved protein [Function unknow	98.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.74
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.74
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.64
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.59
COG3391	381	Uncharacterized conserved protein [Function unknow	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.55
PRK02888	635	nitrous-oxide reductase; Validated	98.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.52
KOG3621	726	consensus WD40 repeat-containing protein [General	98.52
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.5
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.43
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.39
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.39
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.37
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.3
KOG2395	644	consensus Protein involved in vacuole import and d	98.3
PRK02888	635	nitrous-oxide reductase; Validated	98.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.26
PHA02713	557	hypothetical protein; Provisional	98.17
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.15
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.13
PRK13616	591	lipoprotein LpqB; Provisional	98.13
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.08
PRK13616	591	lipoprotein LpqB; Provisional	98.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.04
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.01
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.0
KOG2395	644	consensus Protein involved in vacuole import and d	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.97
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.88
PHA03098	534	kelch-like protein; Provisional	97.85
KOG2444	238	consensus WD40 repeat protein [General function pr	97.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.79
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.72
COG5167	776	VID27 Protein involved in vacuole import and degra	97.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.7
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.65
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.64
PHA02790	480	Kelch-like protein; Provisional	97.6
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.54
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.46
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.41
KOG2444	238	consensus WD40 repeat protein [General function pr	97.4
PRK13684	334	Ycf48-like protein; Provisional	97.4
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.39
COG5167	776	VID27 Protein involved in vacuole import and degra	97.35
PHA02713	557	hypothetical protein; Provisional	97.33
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.31
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.29
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.26
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.12
PRK13684	334	Ycf48-like protein; Provisional	97.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.01
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.9
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.88
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.74
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.72
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.64
PHA03098	534	kelch-like protein; Provisional	96.62
PLN02193	470	nitrile-specifier protein	96.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.6
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.56
PLN02153	341	epithiospecifier protein	96.55
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.47
KOG2247	615	consensus WD40 repeat-containing protein [General	96.46
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.46
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.46
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.42
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.36
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.2
PHA02790	480	Kelch-like protein; Provisional	96.17
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.07
KOG2247	615	consensus WD40 repeat-containing protein [General	96.05
COG5276	370	Uncharacterized conserved protein [Function unknow	96.03
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.03
PRK10115	686	protease 2; Provisional	96.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.87
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	95.81
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.8
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.6
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.48
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.47
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.27
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.22
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.88
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.83
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	94.79
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.75
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.71
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.69
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.52
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.17
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.17
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.1
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.05
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.96
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.75
PLN02153	341	epithiospecifier protein	93.69
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.63
COG5276	370	Uncharacterized conserved protein [Function unknow	93.54
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.53
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.47
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.43
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.33
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.06
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.98
PLN02193	470	nitrile-specifier protein	92.96
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.85
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	92.66
COG4590	733	ABC-type uncharacterized transport system, permeas	92.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.22
COG4590	733	ABC-type uncharacterized transport system, permeas	92.2
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.98
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	91.78
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.73
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.72
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	91.55
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.11
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.74
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.6
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.48
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.08
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.03

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.5e-45  Score=286.44  Aligned_cols=233  Identities=22%  Similarity=0.366  Sum_probs=220.9

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      .....+++|.||.+.|.++.|+|. +..-+|+|+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence            445788999999999999999996 4778999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      -++||+.++..+....+|..+|.+++|+|+|.++++|+.|..-+|||+|++.++..+.+|..+|..+.|+|+|..|+||+
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV  287 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~  287 (288)
                      .|++++|||++....+.++..   |..-|+.++|+| .|.+|++++.|++++||...+..+++.+.+|..-++|.|.+
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipA---H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis  439 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPA---HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS  439 (459)
T ss_pred             CCCcEEEeeecccccceeccc---ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence            999999999998888888887   888999999999 78999999999999999999999999998888777777654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-43  Score=273.37  Aligned_cols=231  Identities=28%  Similarity=0.508  Sum_probs=204.8

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      -.++...+.||.++|.|++|+| ++..|++|+.|.++++||+.+..+..+.++|..-|.|++|+|||+.||+|+.||.|+
T Consensus       104 vtrCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  104 VTRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR  182 (480)
T ss_pred             cceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence            3456677889999999999999 889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCcee-EEeccCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEECCcccEEEEe-------------------
Q 023018          133 IWDPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMF-------------------  187 (288)
Q Consensus       133 i~d~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------  187 (288)
                      +||..+++++ ..+.+|...|++++|.|     ..++|++++.||.|+|||+..++++..+                   
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliy  262 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIY  262 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEE
Confidence            9999988654 56889999999999987     5668999999999999998765543222                   


Q ss_pred             --------------------------------------------------------------------------------
Q 023018          188 --------------------------------------------------------------------------------  187 (288)
Q Consensus       188 --------------------------------------------------------------------------------  187 (288)
                                                                                                      
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence                                                                                            


Q ss_pred             ---------------------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          188 ---------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       188 ---------------------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                                           .+|..-|..+.|+|+++++++++.|..|++||.++|+.+..+++   |-.+|+.++|+.
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG---Hv~~VYqvawsa  419 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG---HVAAVYQVAWSA  419 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh---ccceeEEEEecc
Confidence                                 24455677889999999999999999999999999999888888   889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018          247 DSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV  287 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~  287 (288)
                      |.++|++|+.|.++++|++++.++...+.++..-+|..||+
T Consensus       420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence            99999999999999999999999999997777777766664

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.1e-43  Score=292.49  Aligned_cols=214  Identities=26%  Similarity=0.505  Sum_probs=204.1

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .......++.||++||..++|+| +.++|++++.|+++++|.+.+...+..+.+|..||+++.|+|.|-|||+++.|++.
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA  517 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA  517 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence            33455567999999999999999 88899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ++|......+++.+.+|.+.+.|+.|||+..++++|+.|.+|++||+.+|..++.|.+|.++|++++|+|+|++|++|+.
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e  597 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE  597 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      ||.|.+||+.++..+..+.+   |.+.|.++.|+.+|.+|++|+.|.+|++||+..-.
T Consensus       598 d~~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            99999999999999999888   78999999999999999999999999999997543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.2e-41  Score=259.80  Aligned_cols=277  Identities=40%  Similarity=0.691  Sum_probs=232.8

Q ss_pred             CCCcccccccccCCCceeeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCC
Q 023018            7 NEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGD   86 (288)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d   86 (288)
                      --++++-+|..+++.|..++...+++++++.+++..+++++.-.......+..|..|+.+|.+++.+| +.+++|||+.|
T Consensus         7 ~iee~Evee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aTGGgD   85 (399)
T KOG0296|consen    7 FIEEEEVEEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGD   85 (399)
T ss_pred             heehhhccccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEecCCC
Confidence            33444555556777777766666666666554444433332222222888999999999999999999 88999999999


Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA  166 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  166 (288)
                      ..-++|++.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||...++.....+......|..+.|||.+.+|++
T Consensus        86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA  165 (399)
T KOG0296|consen   86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA  165 (399)
T ss_pred             ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence            99999999999999999999999999999999999999999999999999999988888766778999999999999999


Q ss_pred             ecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC--------------
Q 023018          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--------------  232 (288)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------  232 (288)
                      |+.||.+.+|.+.+....+.+.+|..++++=.|.|+|++++++..||+|++|++++++++..+...              
T Consensus       166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~  245 (399)
T KOG0296|consen  166 GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG  245 (399)
T ss_pred             ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence            999999999999998889999999999999999999999999999999999999998776443310              


Q ss_pred             ------------------------------------------------------------------------------Cc
Q 023018          233 ------------------------------------------------------------------------------PY  234 (288)
Q Consensus       233 ------------------------------------------------------------------------------~~  234 (288)
                                                                                                    -.
T Consensus       246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~  325 (399)
T KOG0296|consen  246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE  325 (399)
T ss_pred             ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc
Confidence                                                                                          00


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d  285 (288)
                      |..+|..+.|-+ ..+|++++.+|.|+.||.+||+++.++.    ++.+.+++|+
T Consensus       326 he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            667789999988 6789999999999999999999999984    4555665554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-41  Score=267.55  Aligned_cols=216  Identities=25%  Similarity=0.381  Sum_probs=204.8

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC--CCEEEEEeCCCeEEEEeCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~  138 (288)
                      .|-+.||..+.|++ ++..||||+.+|.+++|+..+...+.++.+|...|.++.|+|.  +..+|+|+.||++++|++.+
T Consensus       172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            45678999999999 8899999999999999999999999999999999999999996  55899999999999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      ..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|+|..+++|+.|..-+||
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW  330 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV  280 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~  280 (288)
                      |+++|.++..+.+   |..+|.++.|+|+|..|++|+.|++++|||++..+.+.++..|..+
T Consensus       331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence            9999999999998   8899999999999999999999999999999999998888555433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=242.25  Aligned_cols=227  Identities=24%  Similarity=0.411  Sum_probs=206.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ....++.+|++.|+.++..+.+..++++++.|..+.+|++..     |.+++.+.+|...|..+..+++|++.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            345688999999999999997789999999999999999864     667889999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCC--CCE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPD--GKT  205 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~--~~~  205 (288)
                      ++++||+.+++..+.|.+|...|.+++|+++.+.+++|+.|.+|++|++.... ..++..+  ...|.|+.|+|+  ..+
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999999999999999999999999999999999999999999986554 4444433  789999999997  678


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAY  282 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~  282 (288)
                      |++++.|++|++||+++.+....+.+   |...++.+.++|||.++++|+.||.+.+||++.++.+..+   ..+.+++|
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~g---h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f  241 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIG---HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF  241 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhcccc---ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe
Confidence            99999999999999999888777777   7889999999999999999999999999999999999888   66888888


Q ss_pred             eec
Q 023018          283 DLD  285 (288)
Q Consensus       283 ~~d  285 (288)
                      +|.
T Consensus       242 spn  244 (315)
T KOG0279|consen  242 SPN  244 (315)
T ss_pred             cCC
Confidence            875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-39  Score=241.36  Aligned_cols=219  Identities=22%  Similarity=0.351  Sum_probs=199.5

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      +...+.+++.|.||+..|..++.++ +++++++++.|+++++||+.+++..+.|.+|...|.+++|+++.+.|++|+.|.
T Consensus        49 d~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk  127 (315)
T KOG0279|consen   49 DIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK  127 (315)
T ss_pred             ccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence            4456788999999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccC-CCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          130 LVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +|++|++-........... ...|+|+.|+|+  ..+|++++.|++|++||+++-+....+.+|.+.++.+.++|||...
T Consensus       128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEE
Confidence            9999998766554444433 788999999997  6799999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|+.||.+.+||++.++.+..+.    +...|.+++|+|+..+|+.+. +..|+|||+.++.++..+
T Consensus       208 asGgkdg~~~LwdL~~~k~lysl~----a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDLNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             ecCCCCceEEEEEccCCceeEecc----CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence            999999999999999999988887    778999999999877776664 556999999999988776

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.7e-38  Score=237.18  Aligned_cols=230  Identities=22%  Similarity=0.406  Sum_probs=211.1

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ....-+..++|+||.+.|.++.|++ +.+.+++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+|+-|.
T Consensus        41 ~~i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   41 GRIQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             eeeeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence            3344566699999999999999999 888999999999999999999888888887888999999999999999999999


Q ss_pred             eEEEEeCCCC------ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-C
Q 023018          130 LVQIWDPSSG------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-D  202 (288)
Q Consensus       130 ~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~  202 (288)
                      ...||++.+.      +..+.+.+|.+.+.++.|-+ ...|++++.|.++.+||+++++.+..|.+|.+.|.++.++| +
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            9999999855      45567889999999999987 56899999999999999999999999999999999999999 9


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cc
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQ  276 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~  276 (288)
                      ++.+++|+-|+..++||++.+...+.|.+   |...|++++|.|+|.-+++|+.|++.++||++..+.+..+      .+
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence            99999999999999999999999999998   8899999999999999999999999999999999999887      56


Q ss_pred             eEEEEEee
Q 023018          277 YTCVAYDL  284 (288)
Q Consensus       277 ~~~~~~~~  284 (288)
                      +.+++||.
T Consensus       276 itSv~FS~  283 (343)
T KOG0286|consen  276 ITSVAFSK  283 (343)
T ss_pred             ceeEEEcc
Confidence            66777654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.4e-39  Score=268.43  Aligned_cols=226  Identities=27%  Similarity=0.443  Sum_probs=209.0

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------------------------------eeeEeecccc
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------------------------------DWASEIQGHK  107 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------------------------------~~~~~~~~~~  107 (288)
                      ++..-...++|..|++ +..++|.|-.|..|++|.+...                               ....++.+|.
T Consensus       373 T~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            3333345799999999 7789999999999999998731                               1234467899


Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe
Q 023018          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (288)
                      ++|....|+|+.++|++++.|+++++|.+.+...+..+++|..+|+.+.|+|.|.+||+++.|++.++|.....++++.+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .+|-+.|.|+.|+|+..|+++|+.|.++|+||+.+|..++.|.+   |..+|.+++|+|+|++|++|+.||.|.+||+.+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            99999999999999999999999999999999999999999988   899999999999999999999999999999999


Q ss_pred             CcEEEEecceEEEEEeecccC
Q 023018          268 GKVCCLNFQYTCVAYDLDFVL  288 (288)
Q Consensus       268 ~~~~~~~~~~~~~~~~~df~~  288 (288)
                      |+++..+.++++..+|..|+.
T Consensus       609 ~~~v~~l~~Ht~ti~SlsFS~  629 (707)
T KOG0263|consen  609 GSLVKQLKGHTGTIYSLSFSR  629 (707)
T ss_pred             CcchhhhhcccCceeEEEEec
Confidence            999999988888888888763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.2e-36  Score=222.05  Aligned_cols=224  Identities=21%  Similarity=0.336  Sum_probs=197.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      +.|+..+.+|+..|+++.|.- +++.+++|+.||+++|||++.....+.+. |..+|+++..+|+..-|++|..+|.|++
T Consensus        73 p~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irv  150 (311)
T KOG0315|consen   73 PNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRV  150 (311)
T ss_pred             CCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEE
Confidence            448999999999999999998 89999999999999999999966666665 7899999999999999999999999999


Q ss_pred             EeCCCCceeEEe-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc------cEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          134 WDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       134 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      ||+........+ +.....|.++...|+|.+++.+...|..++|++-+.      .++.+++.|.+.+..+.+||++++|
T Consensus       151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            999988655544 345568999999999999999999999999998654      4677888999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEE
Q 023018          207 CTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY  282 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~  282 (288)
                      ++++.|.+++||+..+. +....+.+   |...++.++||.+|.+|++|+.|+.+++|++..++.++...++.....
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~g---h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v  304 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTG---HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV  304 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeec---CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence            99999999999999876 34445555   778999999999999999999999999999999999998866654443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-37  Score=241.77  Aligned_cols=207  Identities=25%  Similarity=0.469  Sum_probs=186.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCC----CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPT----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ...-..|++|...|++++|.|-    ..++||+++.||.++|||+..++.+..+.+|..+|+|++|--+| +|++|+.|+
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Dr  268 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDR  268 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCc
Confidence            4455688999999999999982    45689999999999999999999999999999999999997554 899999999


Q ss_pred             eEEEEeCCCCceeEEe----------------------------------------------------------------
Q 023018          130 LVQIWDPSSGNLKCTL----------------------------------------------------------------  145 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~----------------------------------------------------------------  145 (288)
                      +|++|+...|+....+                                                                
T Consensus       269 tIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl  348 (480)
T KOG0271|consen  269 TIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL  348 (480)
T ss_pred             eEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence            9999986654433322                                                                


Q ss_pred             ---------------ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          146 ---------------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       146 ---------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                                     .+|..-|+.+.|+|+++++|+++.|..|++|+.++|+.+.+|++|-.+|+.++|+.|.++|++|+
T Consensus       349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S  428 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS  428 (480)
T ss_pred             EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC
Confidence                           23455688999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .|.++++|++++.+....+.+   |...|.++.|+|||..+++|+.|..+++|.
T Consensus       429 kDsTLKvw~V~tkKl~~DLpG---h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  429 KDSTLKVWDVRTKKLKQDLPG---HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEeeeeeecccCCC---CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999888877777   889999999999999999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.2e-37  Score=238.94  Aligned_cols=227  Identities=26%  Similarity=0.412  Sum_probs=211.4

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ...|-+..+.+++|.+-|.|+++.| ....|++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|+
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            4456677888999999999999999 788999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      .|+.||+...+.++.+.+|-+.|.+++.+|.-..|++|+.|.++++||+|+...+..+.+|..+|.++.+.|-...+++|
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEE
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVA  281 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~  281 (288)
                      +.|++|++||++.|+...++..   |...+.+++.+|....+++++.| .|+-|++..|..+..+.++..+.
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             cCCceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence            9999999999999998888776   78899999999998888888766 69999999999888775555444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=223.90  Aligned_cols=231  Identities=25%  Similarity=0.414  Sum_probs=209.5

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC------eeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ....++.+.-.+.-|..++|+| .++++|+|+.|....||++.+.      +..+.+.+|.+-+.|+.|.++ ..|++++
T Consensus        86 TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~S  163 (343)
T KOG0286|consen   86 TTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGS  163 (343)
T ss_pred             cccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecC
Confidence            3445566666677899999999 8999999999999999999854      455678899999999999875 4789999


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      .|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.++++|.+|.+.|.+++|.|+|.-
T Consensus       164 GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a  243 (343)
T KOG0286|consen  164 GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA  243 (343)
T ss_pred             CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe
Confidence            999999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVA  281 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~  281 (288)
                      +++|+.|++.++||++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.    .++|+.
T Consensus       244 fatGSDD~tcRlyDlRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~  322 (343)
T KOG0286|consen  244 FATGSDDATCRLYDLRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG  322 (343)
T ss_pred             eeecCCCceeEEEeecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence            9999999999999999999888887433 66789999999999999999999999999999999999984    467788


Q ss_pred             Eeecc
Q 023018          282 YDLDF  286 (288)
Q Consensus       282 ~~~df  286 (288)
                      .+||-
T Consensus       323 ~s~DG  327 (343)
T KOG0286|consen  323 VSPDG  327 (343)
T ss_pred             ECCCC
Confidence            77764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.7e-35  Score=248.70  Aligned_cols=229  Identities=18%  Similarity=0.300  Sum_probs=193.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCC-CEEEEEeCCC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDG  129 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg  129 (288)
                      ..+.+|.++|++++|+|.++.+|++|+.||+|++|++.+.       ..+..+.+|...|.+++|+|.+ .+|++|+.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4578999999999999977789999999999999999764       3566788999999999999975 6899999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC-eEEEEEcCCCCEEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICT  208 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~p~~~~l~~  208 (288)
                      +|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            9999999999998899999999999999999999999999999999999999999888888764 456789998888776


Q ss_pred             Ee----CCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe-----cce
Q 023018          209 GS----DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN-----FQY  277 (288)
Q Consensus       209 ~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~-----~~~  277 (288)
                      ++    .|+.|++||+++... +......  ....+....|++++.+|++++ .||.|++||+.+++++...     .++
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~  306 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD--QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH  306 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccC--CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence            54    478999999987653 3332221  234566677899999998887 5999999999999987765     356


Q ss_pred             EEEEEeecccC
Q 023018          278 TCVAYDLDFVL  288 (288)
Q Consensus       278 ~~~~~~~df~~  288 (288)
                      .+++|.|.+.+
T Consensus       307 ~g~~~~pk~~~  317 (493)
T PTZ00421        307 KGLCMMPKWSL  317 (493)
T ss_pred             cceEecccccc
Confidence            78888887753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.9e-38  Score=245.63  Aligned_cols=227  Identities=26%  Similarity=0.428  Sum_probs=203.2

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ....+++.|.++|.++.|++ ++..+++|+.+|.|++|+..-. .++.++. |...|++++|+|+...|++++.||+|+|
T Consensus       129 nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki  206 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI  206 (464)
T ss_pred             eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence            33456678999999999999 8899999999999999997643 3445554 4589999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      ||....+....+.+|.--|.+++|+|...+|++|+.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|.
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-cceEEEEEeecc
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN-FQYTCVAYDLDF  286 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~-~~~~~~~~~~df  286 (288)
                      .+++||+++.+.+..+++   |...++++.|+| ...+|.+|+.||.|..|.+...+++..+ ..+...+||.+|
T Consensus       287 ~~kv~DiR~mkEl~~~r~---Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~  358 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRG---HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY  358 (464)
T ss_pred             eEEEEehhHhHHHHHhhc---chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeec
Confidence            999999998888888887   888999999999 6788999999999999999977776666 556666666655

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=234.45  Aligned_cols=231  Identities=21%  Similarity=0.372  Sum_probs=214.9

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ...+....|+||.+.|..++|+. .++++|+++.|-.+++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+
T Consensus       138 ~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t  216 (406)
T KOG0295|consen  138 ETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT  216 (406)
T ss_pred             cchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence            33455778899999999999999 789999999999999999987 5677778899999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC--------
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--------  202 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~--------  202 (288)
                      |+.|++.++-.+.++.+|...+..++.+.+|.++++++.|.++++|-+.++++...++.|.-+|-+++|.|.        
T Consensus       217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999873        


Q ss_pred             -------CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          203 -------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       203 -------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                             ++++++++.|++|++||+.++.++.++.+   |...|..++|+|.|++|+++..|+++++||++++++.+++.
T Consensus       297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g---hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG---HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             ccCCCCCccEEEeecccceEEEEeccCCeEEEEEec---ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence                   25899999999999999999999999998   88999999999999999999999999999999999999998


Q ss_pred             ceEEEEEeecc
Q 023018          276 QYTCVAYDLDF  286 (288)
Q Consensus       276 ~~~~~~~~~df  286 (288)
                      .+...+-+.||
T Consensus       374 ah~hfvt~lDf  384 (406)
T KOG0295|consen  374 AHEHFVTSLDF  384 (406)
T ss_pred             CCcceeEEEec
Confidence            88777777766

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-35  Score=236.62  Aligned_cols=232  Identities=21%  Similarity=0.399  Sum_probs=211.6

Q ss_pred             CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018           47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ......++..+.+|..|.+||.++.|+. .+.+|++++.||++.+||..++.....+..|..+..++.|-.+ ..|++++
T Consensus       259 ~riw~~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~  336 (524)
T KOG0273|consen  259 ARIWNKDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSS  336 (524)
T ss_pred             EEEEecCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecC
Confidence            4445577788888999999999999999 8889999999999999999999999999989988888999754 4689999


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC---
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG---  203 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~---  203 (288)
                      .||.|+|+.+....+..++.+|.+.|.++.|+|.+.+|++++.|++++||..........+.+|...|..+.|+|.|   
T Consensus       337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~  416 (524)
T KOG0273|consen  337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT  416 (524)
T ss_pred             CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999964   


Q ss_pred             ------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--
Q 023018          204 ------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF--  275 (288)
Q Consensus       204 ------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~--  275 (288)
                            ..+++++.|++|++||+..+.++..+..   |..+|.+++|+|+|++|++|+.||.|.+|+++++++++.+.  
T Consensus       417 ~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k---H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  417 SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK---HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             CCCcCCceEEEeecCCeEEEEEccCCceeEeecc---CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence                  4689999999999999999999999977   88999999999999999999999999999999999999883  


Q ss_pred             -ceEEEEEe
Q 023018          276 -QYTCVAYD  283 (288)
Q Consensus       276 -~~~~~~~~  283 (288)
                       .+..+.|+
T Consensus       494 ~~Ifel~Wn  502 (524)
T KOG0273|consen  494 GGIFELCWN  502 (524)
T ss_pred             CeEEEEEEc
Confidence             33444444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.6e-37  Score=246.65  Aligned_cols=233  Identities=22%  Similarity=0.401  Sum_probs=205.2

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      .|.+.++.+.||+..|+++.|.|..+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|+++|..|++++.|+.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            477888999999999999999998889999999999999999987 8899999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      |++||+++|+++..+... ..+.++.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-++|..+.|-+++++++++
T Consensus       282 lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            999999999999998743 468999999987 799999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEE----------------------------------------------EcCCCccccCeEEEE
Q 023018          210 SDDATLRVWNPKSGENIHV----------------------------------------------IRGHPYHTEGLTCLT  243 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~----------------------------------------------~~~~~~~~~~v~~~~  243 (288)
                      +.|+.++||+.+..-++..                                              +.++. ..+.-..+.
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-vaGys~~v~  439 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-VAGYSCQVD  439 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-ccCceeeEE
Confidence            9999999999765432211                                              11111 112245689


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018          244 ISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF  286 (288)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df  286 (288)
                      |||||.+|++|+.||.+.+||.+|-+++..+..+..++.+.+|
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence            9999999999999999999999999999999777666666655

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.3e-35  Score=249.46  Aligned_cols=221  Identities=29%  Similarity=0.509  Sum_probs=200.1

Q ss_pred             eeEeecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+.+| ...|.++.|++ ++..+++++.++.+++|+....+  ....+.+|...|.+++|+|+++++++++.|++|+|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            4555454 78999999999 77789999999999999997777  67777889999999999999999999999999999


Q ss_pred             EeC-CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       134 ~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ||+ ..+..++++.+|...|++++|+|.++++++|+.|++|++||+++++++..+.+|..+|++++|++++++|++++.|
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            999 5568899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEE
Q 023018          213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC  279 (288)
Q Consensus       213 g~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~  279 (288)
                      +.|+|||+.++.  +...+....... +++++.|+|++.+|++++.|+.+++|++.+++++..+.++..
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~  377 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN  377 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence            999999999998  456666654334 799999999999999999999999999999999888755443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-36  Score=218.10  Aligned_cols=228  Identities=25%  Similarity=0.365  Sum_probs=209.5

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      .+.|.+..+++..|+++|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.+...|++|+.|.
T Consensus         3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence            4566778899999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      .+.+||+.+|+..+.+++|.+.|+.++|+.+...+++|+.|..+++||.++.  ++++.+......|.++..+  +..++
T Consensus        82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv  159 (307)
T KOG0316|consen   82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV  159 (307)
T ss_pred             eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence            9999999999999999999999999999999999999999999999999874  7888888888899999886  56799


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeec
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLD  285 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~d  285 (288)
                      +|+.||+++.||++.|+...-.     ...+|++++|+++++.+++++.|+++++.|-.||++++.+.++....|-.|
T Consensus       160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld  232 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD  232 (307)
T ss_pred             eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence            9999999999999998765444     457899999999999999999999999999999999999988777666554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-35  Score=250.20  Aligned_cols=228  Identities=32%  Similarity=0.557  Sum_probs=202.4

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc-cCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ..+.+.+|...|.+++|+| ++.++++++.|++|+||++ ..+..++++.+|...|++++|+|+++++++|+.|++|+||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW  273 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW  273 (456)
T ss_pred             hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence            5667789999999999999 8889999999999999999 5568899999999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEeeccCCC--eEEEEEcCCCCEEEEEe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS  210 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~p~~~~l~~~~  210 (288)
                      |+.++++...+.+|..+|++++|++++++|++++.|+.|++||+.++.  ++..+..+..+  ++++.|+|++.+|++++
T Consensus       274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            999999999999999999999999999999999999999999999998  56677666555  99999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecce-EEEEEee
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQY-TCVAYDL  284 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~-~~~~~~~  284 (288)
                      .|+.+++||+..+..+..+.++......+.+...++.+.++++|+.|+.|++|++.++..+..+.++ .......
T Consensus       354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL  428 (456)
T ss_pred             CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecc
Confidence            9999999999999988888875322124445556778999999999999999999999888888666 4444433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-33  Score=211.11  Aligned_cols=211  Identities=29%  Similarity=0.489  Sum_probs=185.9

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEee-ccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ..++.+++|.+.|..++|+|..+.+||+|+.|..|++|+...   ..+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            457889999999999999994388999999999999999984   3333334 369999999999999999999999999


Q ss_pred             EEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCCCCE
Q 023018          131 VQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       131 i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      +.||.-..+  +.+..+.+|...|.+++|+++|++||+++.|+.|.||.+...   .+...++.|...|..+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            999976543  678889999999999999999999999999999999998743   578889999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCC---CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          206 ICTGSDDATLRVWNPK---SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      |++++.|.+|++|+-.   ...+..++.+   |...|.+++|++.|..|++++.|++++||...+.
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence            9999999999999866   2356777777   6779999999999999999999999999996643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-34  Score=239.36  Aligned_cols=215  Identities=28%  Similarity=0.475  Sum_probs=194.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ..+...+||...+++++++| +++++|||+.||.|+|||..++-+..++..|...|+.+.|+..++.+++++-||+|+.|
T Consensus       341 sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence            44556678999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCC-CCEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          135 DPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       135 d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      |+...+..++|..+. ....|++..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|.+||.+++|+|.+..|++++.|
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            999999888887654 3578899999999999999886 59999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          213 ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+|++||+-.. ..+.++.    ....+..++|+|+|.-|++++.||.|.+||+..+..+..+
T Consensus       500 kTVRiW~if~s~~~vEtl~----i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLE----IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             ceEEEEEeeccCceeeeEe----eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999998644 3445555    5677999999999999999999999999999887766433

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=3.7e-33  Score=238.92  Aligned_cols=231  Identities=15%  Similarity=0.281  Sum_probs=185.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--------eeEeeccccCcEEEEEEecCCCE-EEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEIQGHKDSVSSLAFSMDGQL-LASG  125 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~-l~~~  125 (288)
                      .++..+.+|.++|.+++|+|.++.+||+|+.||+|+||++.++.        ++..+.+|...|.+++|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            56788999999999999999667899999999999999997632        34467889999999999998875 5788


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE-----EEEc
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC-----GDFT  200 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-----~~~~  200 (288)
                      +.|++|+|||+.+++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+..     ..|+
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence            999999999999998777775 5567999999999999999999999999999999999999999876533     2345


Q ss_pred             CCCCEEEEEeCCC----eEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018          201 PDGKTICTGSDDA----TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-  274 (288)
Q Consensus       201 p~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-  274 (288)
                      +++.+|++++.++    .|+|||+++ +.++..+... .+...+......+++.++++|+.|+.|++|++.++.....- 
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~  302 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE  302 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc
Confidence            8889999988764    799999995 4555544321 13333334444556889999999999999999887533221 


Q ss_pred             ----cceEEEEEeeccc
Q 023018          275 ----FQYTCVAYDLDFV  287 (288)
Q Consensus       275 ----~~~~~~~~~~df~  287 (288)
                          .++.+++|.|+-.
T Consensus       303 ~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        303 YKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cccCCCccceEEccccc
Confidence                4567788877653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.1e-36  Score=233.99  Aligned_cols=211  Identities=23%  Similarity=0.437  Sum_probs=189.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ..+|..+.|.| +++.|++|+..|.+.+|+.........++.|..+|.++.|++++.++++|..+|.|++|+..-.....
T Consensus        96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            34799999999 88888999999999999986665556678899999999999999999999999999999976554433


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ....|...|++++|+|+...|++++.||+|+|||....+.-..+.+|.-.|.++.|+|....|++++.|..|++||.+++
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            33334478999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceE
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYT  278 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~  278 (288)
                      .++.++..   |+..|..+.|.|++++|++++.|..++++|+++.+.+..+.++.
T Consensus       255 ~cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  255 SCLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             chhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence            99999887   88999999999999999999999999999999888877775443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.3e-34  Score=231.79  Aligned_cols=237  Identities=20%  Similarity=0.291  Sum_probs=184.5

Q ss_pred             CCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeec-cccCcEEEEEEecCCCEE
Q 023018           48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQ-GHKDSVSSLAFSMDGQLL  122 (288)
Q Consensus        48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~-~~~~~i~~~~~~~~~~~l  122 (288)
                      .....|......+++|+..|.++++.| .+..|++|+.|.+|++||+....    ..+.+. .....|.++.|++.+..|
T Consensus       151 ~~~~IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~i  229 (641)
T KOG0772|consen  151 IIKLIPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQI  229 (641)
T ss_pred             hhhcCCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeE
Confidence            345578888899999999999999999 78889999999999999997532    122222 345679999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEE------------eccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCccc-EEEEee
Q 023018          123 ASGGLDGLVQIWDPSSGNLKCT------------LEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA-YLNMFS  188 (288)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~  188 (288)
                      ++.+.....+|+|-........            -++|...+++.+|+|. ...+++++.||++++|++...+ .+.+++
T Consensus       230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            8888889999999554333222            2467788999999995 4589999999999999997653 333443


Q ss_pred             -----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc--CeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          189 -----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       189 -----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                           +..-+++.++|+|+|..+|+|+.||.|.+|+..+......+.....|..  .|+++.||++|++|++-+.|++++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence                 2345789999999999999999999999999865433222222222444  899999999999999999999999


Q ss_pred             EEEcCCCcEE-EEe------cceEEEEEeec
Q 023018          262 MVNITTGKVC-CLN------FQYTCVAYDLD  285 (288)
Q Consensus       262 iwd~~t~~~~-~~~------~~~~~~~~~~d  285 (288)
                      +||++..+.. ...      +.-+.++|||+
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd  420 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD  420 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCC
Confidence            9999876433 322      66778888886

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.5e-33  Score=222.42  Aligned_cols=224  Identities=32%  Similarity=0.574  Sum_probs=202.4

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ++.+++|.++|++++|+| ++.++++++.+|.|++|++.+++....+..|...+..+.|+|++++|++++.+|.|++|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            456789999999999999 7789999999999999999998888888889999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      .+++....+..+...+.++.|+++++++++++.+|.|++|++++++....+..|...+.++.|+|++.++++++.++.|+
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            99888888888888999999999988888888899999999998888888888999999999999988998888899999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      +||+++++....+..   +...+.++.|+|++..|++++.+|.|++||+++++.+..+    ..+.++.|++
T Consensus       161 i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  229 (289)
T cd00200         161 LWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP  229 (289)
T ss_pred             EEEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence            999998887777765   6678999999999999999999999999999998888776    3566666666

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-34  Score=222.11  Aligned_cols=229  Identities=26%  Similarity=0.407  Sum_probs=210.4

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .+....+.+.+|..+|+.+-|+| ...++++++.|++|++||+.+++....+++|...+.+++|+..|+++++++.|-.+
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             CCCCchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            44467788899999999999999 78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          132 QIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       132 ~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      ++||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s  254 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS  254 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC
Confidence            9999987 466777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVCCLN-  274 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~t~~~~~~~-  274 (288)
                      .|.+|++|-+.++++...++.   |..+|-+++|.|.               ++++++++.|++|++||+.+|+++.++ 
T Consensus       255 ~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~  331 (406)
T KOG0295|consen  255 NDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV  331 (406)
T ss_pred             CCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe
Confidence            999999999999988778877   7788999998762               258999999999999999999999999 


Q ss_pred             ---cceEEEEEee
Q 023018          275 ---FQYTCVAYDL  284 (288)
Q Consensus       275 ---~~~~~~~~~~  284 (288)
                         ..+++++|+|
T Consensus       332 ghdnwVr~~af~p  344 (406)
T KOG0295|consen  332 GHDNWVRGVAFSP  344 (406)
T ss_pred             cccceeeeeEEcC
Confidence               4567888874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-33  Score=222.81  Aligned_cols=215  Identities=25%  Similarity=0.439  Sum_probs=194.4

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..|++++|+. ++.+||+|+.||.++||+.. +..+.++..|++||.++.|+..|.||++++.|+++.+||..++.....
T Consensus       236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            5799999998 89999999999999999965 677888999999999999999999999999999999999999999999


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  224 (288)
                      +.-|..+-..+.|-. ...+++++.|+.|+++.+....++.++.+|.++|.+|.|.|.+.+|++++.|++++||......
T Consensus       314 f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence            988888777888875 4588999999999999999999999999999999999999999999999999999999988877


Q ss_pred             eeEEEcCCCccccCeEEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          225 NIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ....+..   |...|..+.|+|.|         ..|++++.|++|++||+..|.++.++    .++..++|+|+
T Consensus       393 ~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  393 SVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             chhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence            7777776   78889999999854         47899999999999999999999999    45666666654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=229.83  Aligned_cols=225  Identities=22%  Similarity=0.363  Sum_probs=197.6

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC-CeEEEEeCCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSS  138 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  138 (288)
                      +...+..|+|.+|++ +..+||+|-..|...+|.+.....++.+.-...+|..++|+..|.+||.||.. |.+-||+.++
T Consensus       261 ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             ecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence            334457899999999 88999999999999999999999999998878899999999999999999754 8999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      ...+...++|...+.+++++|+|+++++|+.||.|+|||.+++-+..+|..|.+.|+.+.|+..|+.|++++.||+|+.|
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence            99888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEEcC-----------------------------------------CCccccCeEEEEEcCCCCEEEEEeCC
Q 023018          219 NPKSGENIHVIRG-----------------------------------------HPYHTEGLTCLTISADSTLALSGSKD  257 (288)
Q Consensus       219 d~~~~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (288)
                      |+......+++..                                         ..+|.++|.+++|+|.+..|++++.|
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            9876544433321                                         12388999999999999999999999


Q ss_pred             CcEEEEEcCCC----cEEEEecceEEEEEeec
Q 023018          258 GSVHMVNITTG----KVCCLNFQYTCVAYDLD  285 (288)
Q Consensus       258 g~i~iwd~~t~----~~~~~~~~~~~~~~~~d  285 (288)
                      .+|++||+-..    +.+.....+..+.|.||
T Consensus       500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             ceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence            99999998543    33344466777777776

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-32  Score=208.42  Aligned_cols=233  Identities=25%  Similarity=0.383  Sum_probs=185.1

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      -..++-.+.+|.+.|+.+.|+| ++.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV  114 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence            3466778899999999999999 89999999999999999954 456677788999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECC-------------------------------
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNAD-------------------------------  179 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~-------------------------------  179 (288)
                      +.||.++|+..+.++.|..-++++.-...|. ++.+++.||++++||+|                               
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggI  194 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGI  194 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccc
Confidence            9999999998888877765555554322222 33344445555555554                               


Q ss_pred             ----------cccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEEcCCC-ccccCeEEEEE
Q 023018          180 ----------RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG----ENIHVIRGHP-YHTEGLTCLTI  244 (288)
Q Consensus       180 ----------~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~-~~~~~v~~~~~  244 (288)
                                .......+.+|..+|+.+..+|+|.++.+-+.|.++++||++..    .++..+.++. ........++|
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw  274 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW  274 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence                      44445666789999999999999999999999999999999743    2355565543 12234567899


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018          245 SADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF  286 (288)
Q Consensus       245 ~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df  286 (288)
                      +|+++.+.+|+.|..+++||..+.+.+..+.++.+.+-..+|
T Consensus       275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~F  316 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDF  316 (338)
T ss_pred             cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeee
Confidence            999999999999999999999999999988666555544444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=201.40  Aligned_cols=234  Identities=18%  Similarity=0.310  Sum_probs=195.6

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      -..+.+..+++...+.|..+...| ++..||+++. -.|++||+.++.  ++.++.+|...|+++.|..+|+++++|+.|
T Consensus        27 a~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD  104 (311)
T KOG0315|consen   27 ALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED  104 (311)
T ss_pred             hhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC
Confidence            356777888887888999999999 7778888776 689999998854  688999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~  207 (288)
                      |+++|||++.....+.+. +.++|+++..+|+...|++|..+|.|++||++...+...+. ....+|.++...|+|.+|+
T Consensus       105 gt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  105 GTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             ceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence            999999999966665555 66899999999999999999999999999999876555443 3456899999999999999


Q ss_pred             EEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEecceEEEEEe
Q 023018          208 TGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLNFQYTCVAYD  283 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~~~~~~~~~~  283 (288)
                      .+...|..++|++-+.+.   +..+...+.|...+..+.+||++++|++++.|.+++||++.+. +.-..+.++..-.|.
T Consensus       184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd  263 (311)
T KOG0315|consen  184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD  263 (311)
T ss_pred             EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence            999999999999876432   2333334458888999999999999999999999999999988 555555666555555


Q ss_pred             eccc
Q 023018          284 LDFV  287 (288)
Q Consensus       284 ~df~  287 (288)
                      ..|+
T Consensus       264 c~FS  267 (311)
T KOG0315|consen  264 CAFS  267 (311)
T ss_pred             eeec
Confidence            5554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2e-32  Score=203.97  Aligned_cols=223  Identities=20%  Similarity=0.336  Sum_probs=201.9

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      ..++||..+++.+.++. ++.+|++++.|.+..+|-..+++.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||+.
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            46889999999999999 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECC-------cccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      +|+++..++.. .+|..+.|++.|++++.++.     .+.|.++|++       ...++..+..+.+.++.+-|.|-+++
T Consensus        83 tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   83 TGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            99999998854 57999999999998888764     4679999998       34567888888899999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAY  282 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~  282 (288)
                      |++|..+|.|.+||+++|+.+....  ..|...|+.++++|+..++++++.|.+-++||+.+.++++++   .++.+.++
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aai  239 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAI  239 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeech--hhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceec
Confidence            9999999999999999986543332  227889999999999999999999999999999999999988   77888888


Q ss_pred             ee
Q 023018          283 DL  284 (288)
Q Consensus       283 ~~  284 (288)
                      +|
T Consensus       240 sP  241 (327)
T KOG0643|consen  240 SP  241 (327)
T ss_pred             cc
Confidence            87

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=208.25  Aligned_cols=222  Identities=20%  Similarity=0.348  Sum_probs=192.4

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCce
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      .+.+..++|++.....+++++.||.++|||+.. ..++..++.|...|.++.|++. ...+++++.||+|++|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            567999999998889999999999999999654 4578889999999999999984 45788889999999999999999


Q ss_pred             eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 023018          142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWN  219 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d  219 (288)
                      +.++.+|...|...+|+| ..+.+++++.|+++++||++..-....+..|...|.++.|+. +.+.|+||+.|+.|++||
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            999999999999999999 677999999999999999987644455888999999999998 667899999999999999


Q ss_pred             CCCCc-eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-EEEEecceEEEEEeecccC
Q 023018          220 PKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK-VCCLNFQYTCVAYDLDFVL  288 (288)
Q Consensus       220 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~-~~~~~~~~~~~~~~~df~~  288 (288)
                      +++.+ ++..+.+   |.-.|+.+.|||. ..+|++++.|-+++|||...+. ++.+...++..++..||++
T Consensus       220 ir~~r~pl~eL~g---h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  220 IRNLRTPLFELNG---HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             hhhccccceeecC---CceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc
Confidence            98754 4455544   8899999999994 5788999999999999998544 4445577888888888875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-33  Score=233.09  Aligned_cols=229  Identities=24%  Similarity=0.408  Sum_probs=201.1

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEecCC-CEEEEE
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDG-QLLASG  125 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~  125 (288)
                      ..+....+++.||+..|.++.... .+-+|++|+.|.++++|.++++.    ++....+|...|.+++++..+ .+|+++
T Consensus       352 ~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv  430 (775)
T KOG0319|consen  352 TLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV  430 (775)
T ss_pred             ecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence            345556669999999999999444 55799999999999999885432    445567899999999997654 489999


Q ss_pred             eCCCeEEEEeCCCCce-----e----EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018          126 GLDGLVQIWDPSSGNL-----K----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~-----~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (288)
                      +.|+++++|++...+.     .    .....|...|++++++|+.++|+||+.|.+.++|++++.....++.+|...|++
T Consensus       431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~  510 (775)
T KOG0319|consen  431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC  510 (775)
T ss_pred             cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence            9999999999976221     1    123458889999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      +.|+|..+.+++++.|++|+||.+.+..+++++.+   |...|..+.|-.++..|++++.||-|++|+++++.|++++..
T Consensus       511 V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG---H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  511 VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG---HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             EEeccccceeEeccCCceEEEEEeccceeeeeecC---ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence            99999999999999999999999999999999998   889999999999999999999999999999999999999977


Q ss_pred             eEEEEEe
Q 023018          277 YTCVAYD  283 (288)
Q Consensus       277 ~~~~~~~  283 (288)
                      |+.-+|+
T Consensus       588 H~DrvWa  594 (775)
T KOG0319|consen  588 HNDRVWA  594 (775)
T ss_pred             ccceeEE
Confidence            7766654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-34  Score=222.99  Aligned_cols=207  Identities=22%  Similarity=0.509  Sum_probs=186.0

Q ss_pred             CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      .+........++.||++.|.|+.|..   +++++|+.|.+|+|||+++++++.++-.|...|..+.|+  ..++++++.|
T Consensus       222 WD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkD  296 (499)
T KOG0281|consen  222 WDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKD  296 (499)
T ss_pred             eccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCC
Confidence            34455677889999999999999954   599999999999999999999999999999999999996  4489999999


Q ss_pred             CeEEEEeCCCCc---eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          129 GLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       129 g~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      .+|.+||+....   ..+.+.+|...|+.+.|+  .+++++++.|.+|++|++.+...++++.+|...|.|+.+  .+++
T Consensus       297 rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rl  372 (499)
T KOG0281|consen  297 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRL  372 (499)
T ss_pred             ceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeE
Confidence            999999998764   334567899999999995  569999999999999999999999999999999999887  4889


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +++|+.|.+|++||+..|.+++.+.+   |+.-|.++.|.  ...+++|+.||+|++||+.++.
T Consensus       373 vVSGSSDntIRlwdi~~G~cLRvLeG---HEeLvRciRFd--~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIECGACLRVLEG---HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             EEecCCCceEEEEeccccHHHHHHhc---hHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence            99999999999999999999999988   78889999995  5689999999999999998864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=207.34  Aligned_cols=210  Identities=22%  Similarity=0.395  Sum_probs=190.0

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ........+.+|.+.|+++.|+. ++.+||||+.+|.|+||...++.....+......|.-+.|+|.+..|+.|+.||.+
T Consensus        94 ~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv  172 (399)
T KOG0296|consen   94 STGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV  172 (399)
T ss_pred             cCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence            34456778889999999999999 89999999999999999999998888887566778889999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-----------------------
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-----------------------  188 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------  188 (288)
                      -+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++|++.+++++.++.                       
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            999999988899999999999999999999999999999999999998876643331                       


Q ss_pred             ------------------------------------------------------------------------ccCCCeEE
Q 023018          189 ------------------------------------------------------------------------GHGSSVTC  196 (288)
Q Consensus       189 ------------------------------------------------------------------------~~~~~i~~  196 (288)
                                                                                              .|..+|+.
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence                                                                                    24667888


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +.|.+ ..+|++++.+|.|+.||.|+|+.+..+.+   |..+|..++++|+.+++++++.|+..+||++.
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            89988 68999999999999999999999999998   78899999999999999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.1e-31  Score=212.85  Aligned_cols=226  Identities=31%  Similarity=0.583  Sum_probs=202.7

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ....+.+|...+..+.|+| ++.++++++.+|.|++|++.+++.+..+..|...+.++.|++++.++++++.+|.|++|+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  121 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD  121 (289)
T ss_pred             cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            6677889999999999999 667889999999999999998888888888999999999999988888888899999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      +.+++....+..|...+.+++|+|++.++++++.+|.|++||+++++.+..+..|...+.++.|+|+++.+++++.++.|
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            99888888888888899999999998899988889999999999998888888898899999999999999999999999


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d  285 (288)
                      ++||+++++.+..+..   +...+.++.|+|++.++++++.+|.|++|++.+++.+..+.    .+.++.|+++
T Consensus       202 ~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         202 KLWDLSTGKCLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             EEEECCCCceecchhh---cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence            9999998887777754   66789999999998888888889999999999988888773    4566777664

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-32  Score=200.07  Aligned_cols=224  Identities=25%  Similarity=0.379  Sum_probs=198.7

Q ss_pred             CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018           47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ...++.....++++.+|...|..++.+. +...+++|+.|..+.+||+.+++..+.+.+|.+.|+.+.|+.+...+++|+
T Consensus        42 rLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs  120 (307)
T KOG0316|consen   42 RLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS  120 (307)
T ss_pred             EeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence            3456788899999999999999999998 777889999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          127 LDGLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       127 ~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      .|.++++||.++.  ++++.+......|.++...  +..|++|+.||+++.||++.|+....+.  ..||++++|+++++
T Consensus       121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~n  196 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGN  196 (307)
T ss_pred             ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCC
Confidence            9999999998765  6777787778889999885  6789999999999999999998776664  56899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      .+++++.+++|++.|-.+|+.+....++...... ..+++......+++|++||.|++||+...+++..+..
T Consensus       197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             EEEEeeccceeeecccchhHHHHHhcccccceee-eeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence            9999999999999999999999999886543333 3456676778899999999999999999998887743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=226.53  Aligned_cols=227  Identities=21%  Similarity=0.325  Sum_probs=207.9

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .+++..|+..|.++.|+| ....++++-..|.|.||+.++...++.+....-||.+..|-+..+++++|+.|+.|+||+.
T Consensus         6 krk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            345666999999999999 5567778888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCe
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT  214 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~  214 (288)
                      .+++.++.|..|...|++++.||...++++++.|-+|++||.+.. .+.+++.+|...|++++|.| |.+.+++++.|++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            999999999999999999999999999999999999999999765 78899999999999999999 7889999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeeccc
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLDFV  287 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~df~  287 (288)
                      |+||.+.+..+..++.+   |..+|+++.+-+.  ..+|++|+.|..|+|||.+|.+|+.++.    .+..+.|.|.|.
T Consensus       165 VKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp  240 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP  240 (794)
T ss_pred             EEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence            99999998888899987   8899999999884  4699999999999999999999999984    456777777653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-32  Score=225.92  Aligned_cols=217  Identities=22%  Similarity=0.336  Sum_probs=199.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...++.+.-..-||.+..|-+ ..+.+++|+.|..|+||++.+++.+..+..|..-|.+++.+|...++++++.|-+|++
T Consensus        45 qtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl  123 (794)
T KOG0276|consen   45 QTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL  123 (794)
T ss_pred             ceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence            344556666677899999998 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC--CCEEEEE
Q 023018          134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--GKTICTG  209 (288)
Q Consensus       134 ~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~--~~~l~~~  209 (288)
                      ||.... .+.++|.+|...|.+++|+| +.+.+++++-|++|++|.+.+..+..++.+|...|.|+.+-+.  ..+|++|
T Consensus       124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg  203 (794)
T KOG0276|consen  124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG  203 (794)
T ss_pred             eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence            999866 56778999999999999999 6779999999999999999999999999999999999999984  4689999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.|.+|+|||..+.++++++.+   |...|..++|+|.-.++++|++||+++||+..|-++..++
T Consensus       204 aDD~tiKvWDyQtk~CV~TLeG---Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  204 ADDLTIKVWDYQTKSCVQTLEG---HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             CCCceEEEeecchHHHHHHhhc---ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            9999999999999999999998   8889999999999999999999999999999987766555

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.4e-33  Score=231.38  Aligned_cols=213  Identities=24%  Similarity=0.379  Sum_probs=196.1

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----eE----eeccccCcEEEEEEecCCCEE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----AS----EIQGHKDSVSSLAFSMDGQLL  122 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~----~~~~~~~~i~~~~~~~~~~~l  122 (288)
                      ....++....+|++.|.+++++..+..+|++++.|+++++|++...+.     +.    ....|...|++++++|+.++|
T Consensus       399 ~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi  478 (775)
T KOG0319|consen  399 SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI  478 (775)
T ss_pred             chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE
Confidence            344556677899999999999988889999999999999999986221     11    234699999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      |+|+.|.+.+||++.......++.+|..++.++.|+|..+.+++++.|++|+||.+.+..+++++.+|...|..+.|-.+
T Consensus       479 AT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~  558 (775)
T KOG0319|consen  479 ATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN  558 (775)
T ss_pred             EecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +..|++++.||.|++|+++++.+..++..   |...|++++.+|...++++|+.||.|.+|.=.|
T Consensus       559 ~~qliS~~adGliKlWnikt~eC~~tlD~---H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  559 GKQLISAGADGLIKLWNIKTNECEMTLDA---HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             CcEEEeccCCCcEEEEeccchhhhhhhhh---ccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999999999999999999999999988   899999999999999999999999999997554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.9e-31  Score=213.04  Aligned_cols=235  Identities=23%  Similarity=0.365  Sum_probs=193.8

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEe
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ..+|-+....++.|+.=|.|+.|+| ++.++|+.+.||++.+||=.+++.+..+.   +|.+.|.+++|+||++.|++++
T Consensus       176 eGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S  254 (603)
T KOG0318|consen  176 EGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS  254 (603)
T ss_pred             eCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec
Confidence            4456677778888999999999999 78999999999999999999999999998   8999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEe-------------------------------------------ccCCCCEEEEEEcCCCCE
Q 023018          127 LDGLVQIWDPSSGNLKCTL-------------------------------------------EGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~i~~~~~~~~~~~  163 (288)
                      .|.+++|||+.+.+++.++                                           .+|...|+++..+|++++
T Consensus       255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence            9999999998776544332                                           567788999999999999


Q ss_pred             EEEecCCCeEEEEECCcccEE-----------EEe---------------------------------------------
Q 023018          164 VLAGSEDSTVWMWNADRAAYL-----------NMF---------------------------------------------  187 (288)
Q Consensus       164 l~~~~~dg~i~i~d~~~~~~~-----------~~~---------------------------------------------  187 (288)
                      |++|+.||.|.-|+..++..-           ..+                                             
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            999999999999998654220           000                                             


Q ss_pred             -----------------ec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018          188 -----------------SG--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (288)
Q Consensus       188 -----------------~~--------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (288)
                                       +.        ......+++++|++..+++|+.||.|+||.+..+....... ...|..+|+.+
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~v  493 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDV  493 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEE
Confidence                             00        01234578899999999999999999999998655322211 11288999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeecc
Q 023018          243 TISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDF  286 (288)
Q Consensus       243 ~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df  286 (288)
                      +++|++.+|++|...+.+.+||+.+.+.....     ..+.+++|+|+-
T Consensus       494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            99999999999999999999999998774322     568899999873

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-33  Score=204.69  Aligned_cols=213  Identities=26%  Similarity=0.402  Sum_probs=189.1

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLD  128 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  128 (288)
                      ..++..|++.++.|...|.++.|++.....+++++.||+|++|+....+.+.++.+|...|...+|+|. .+.+++++.|
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence            557778999999999999999999988889999999999999999999999999999999999999994 5689999999


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKT  205 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~  205 (288)
                      |++++||++.......+..|...|.++.|+. +.+.+++|+.|+.|++||+++. .++..+.+|.-.|+.++||| ....
T Consensus       170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence            9999999987665566888999999999998 6779999999999999999985 57888899999999999999 4567


Q ss_pred             EEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 023018          206 ICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  265 (288)
                      |++++.|-+++|||...+. .+.+...   |...+..+.|++ ++.++++++.|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~---HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDH---HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhc---cceEEeccccccccCceeeecccccceeeecc
Confidence            8999999999999987443 3333333   788899999998 7789999999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=7.5e-32  Score=205.08  Aligned_cols=223  Identities=23%  Similarity=0.369  Sum_probs=193.6

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------------------CeeeEeeccccCcEE
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVS  111 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~  111 (288)
                      .+.+.-....+..|.+++.+.+|+| ++.++|+|+.|..|+|.|++.                  ...++++..|..+|+
T Consensus        98 ~e~~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn  176 (430)
T KOG0640|consen   98 PEPSEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN  176 (430)
T ss_pred             CCCcccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc
Confidence            4455666778899999999999999 899999999999999999862                  125667788999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--
Q 023018          112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--  187 (288)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--  187 (288)
                      ++.|+|....|++|+.|++|++||+......+.++  ....++.++.|+|.|.+|++|+...++++||+.+.++...-  
T Consensus       177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence            99999999999999999999999997654333222  23457999999999999999999999999999988765443  


Q ss_pred             -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          188 -SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       188 -~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                       ..|...|+++.+++.++..++++.||.|++||--+++++.++.... ....|.+..|..+++++++.+.|..+++|.+.
T Consensus       257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence             3588999999999999999999999999999999999988886542 35678999999999999999999999999999


Q ss_pred             CCcEEEEe
Q 023018          267 TGKVCCLN  274 (288)
Q Consensus       267 t~~~~~~~  274 (288)
                      ||+++..+
T Consensus       336 t~R~l~~Y  343 (430)
T KOG0640|consen  336 TGRMLKEY  343 (430)
T ss_pred             CCceEEEE
Confidence            99999987

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.8e-32  Score=208.11  Aligned_cols=218  Identities=23%  Similarity=0.391  Sum_probs=200.5

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      -..++...++.||-..|..+++++ ...++++++.|+.|+.||+...+.++.+.+|-..|.|++.+|.-+.|++|+.|.+
T Consensus       180 latg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst  258 (460)
T KOG0285|consen  180 LATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST  258 (460)
T ss_pred             cccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce
Confidence            355778889999999999999999 6778899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      ++|||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++.+.++..|+..+++++.+|....+++++
T Consensus       259 ~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas  338 (460)
T KOG0285|consen  259 IRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS  338 (460)
T ss_pred             EEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999988899988


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .| .|+-|++..|..+..+.+   |...|++++...|+ ++++|+..|.|.+||.++|-..+..
T Consensus       339 ~d-nik~w~~p~g~f~~nlsg---h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  339 PD-NIKQWKLPEGEFLQNLSG---HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             Cc-cceeccCCccchhhcccc---ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence            76 489999999988777766   78889999988775 6789999999999999998655543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-30  Score=196.39  Aligned_cols=230  Identities=24%  Similarity=0.365  Sum_probs=192.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----------------------------------
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----------------------------------   99 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------------------   99 (288)
                      ++.+.++.-.+.|+++.|++ ++.++++++.|-.++|||..+++.                                   
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            45566666788999999999 788888899999999999866543                                   


Q ss_pred             ---------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC
Q 023018          100 ---------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED  170 (288)
Q Consensus       100 ---------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  170 (288)
                               ++.+.+|...|++++.+|-+..+++++.|++|++||++..+....+.....+  .++|.|.|-++|++...
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence                     3344789999999999999999999999999999999988877777655443  47999999999999988


Q ss_pred             CeEEEEECCcc--cEEEEee---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc
Q 023018          171 STVWMWNADRA--AYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS  245 (288)
Q Consensus       171 g~i~i~d~~~~--~~~~~~~---~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  245 (288)
                      ..|++||+|..  .+..++.   ......+.|.|+|+|++|+.++..+.+++.|.-+|.....+..++....-....+|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence            89999999874  3444443   336678999999999999999999999999999999988888765444334677899


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeeccc
Q 023018          246 ADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDFV  287 (288)
Q Consensus       246 ~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df~  287 (288)
                      |+++++++|+.||+|.+|++.+|+.+..+     ....++.|+|.|.
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~  288 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA  288 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence            99999999999999999999999999887     3467888888764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.9e-31  Score=196.48  Aligned_cols=205  Identities=24%  Similarity=0.420  Sum_probs=176.5

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      .+|+..|..++|+| .+++||+++.|.++.||.-..  .+++.++.+|...|.|++|+++|.+||++++|..|-||.+..
T Consensus        58 ~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             ccchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence            47999999999999 788999999999999998765  367888999999999999999999999999999999999875


Q ss_pred             C---ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC---cccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          139 G---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       139 ~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      +   .....++.|..-|..+.|||...+|++++.|.+|++|.-.   ...+++++.+|...|.+++|+|.|..|++++.|
T Consensus       137 ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  137 DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            4   4667788999999999999999999999999999999866   346899999999999999999999999999999


Q ss_pred             CeEEEEeCCCC-------ce------------------eEEEc---------------CCCccccCeEEEEEcCC-CCEE
Q 023018          213 ATLRVWNPKSG-------EN------------------IHVIR---------------GHPYHTEGLTCLTISAD-STLA  251 (288)
Q Consensus       213 g~i~i~d~~~~-------~~------------------~~~~~---------------~~~~~~~~v~~~~~~~~-~~~l  251 (288)
                      ++++||-..+.       +.                  ++.+.               ....|...|+++.|.|. ..+|
T Consensus       217 ~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L  296 (312)
T KOG0645|consen  217 GTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL  296 (312)
T ss_pred             cceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCce
Confidence            99999974321       10                  11111               11236678999999994 6889


Q ss_pred             EEEeCCCcEEEEEcC
Q 023018          252 LSGSKDGSVHMVNIT  266 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~  266 (288)
                      ++|+.||.|++|.+.
T Consensus       297 ~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  297 ASGGDDGIVNFWELE  311 (312)
T ss_pred             eecCCCceEEEEEec
Confidence            999999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-31  Score=227.47  Aligned_cols=219  Identities=22%  Similarity=0.357  Sum_probs=196.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+..|.+|.++|..++|+| .+.++++|+.|-.|++|++.+.+++.++.+|-.-|..+.|++...+|++++.|.+|+|
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI  119 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI  119 (1202)
T ss_pred             hhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence            355677788999999999999 7789999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----------------------------EE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YL  184 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~  184 (288)
                      |+..+++++..+.+|...|.|..|+|....+++++-|.+|++||+..-+                             ..
T Consensus       120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence            9999999999999999999999999999999999999999999974210                             12


Q ss_pred             EEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       185 ~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      +.+.+|...|.-++|+|.-..+++|+.|..|++|.+...+ ........+|...|.++-|+|...++++.++|+.|+|||
T Consensus       200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            4556899999999999999999999999999999986543 333333334889999999999999999999999999999


Q ss_pred             cCCCcEEEEe
Q 023018          265 ITTGKVCCLN  274 (288)
Q Consensus       265 ~~t~~~~~~~  274 (288)
                      +...+.+.++
T Consensus       279 m~kRt~v~tf  288 (1202)
T KOG0292|consen  279 MTKRTSVQTF  288 (1202)
T ss_pred             cccccceeee
Confidence            9998888877

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-32  Score=219.01  Aligned_cols=207  Identities=20%  Similarity=0.384  Sum_probs=182.9

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLV  131 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  131 (288)
                      ....++++.||+.+|..++|++ .+..+.+++.|+.|++||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki  324 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI  324 (503)
T ss_pred             Ccceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence            3678899999999999999999 77788899999999999999999999987 55678999999998 689999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--------------------------
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--------------------------  185 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------  185 (288)
                      +.||+++++.++.+..|-+.|..+.|-++|+.+++++.|++++||+.+.+-+++                          
T Consensus       325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence            999999999999999999999999999999999999999999999976542211                          


Q ss_pred             --------------------Eeecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018          186 --------------------MFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (288)
Q Consensus       186 --------------------~~~~~--~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (288)
                                          .+.+|  .+....+.|||||.+|++|+.+|.+.+||.++.+.+..+..   |..++..+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka---h~~~ci~v~  481 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA---HDQPCIGVD  481 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc---CCcceEEEE
Confidence                                11233  23456789999999999999999999999999888888877   788999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEE
Q 023018          244 ISA-DSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       244 ~~~-~~~~l~~~~~dg~i~iwd  264 (288)
                      |+| ....+++++.+|.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            999 457899999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.9e-31  Score=204.06  Aligned_cols=232  Identities=24%  Similarity=0.418  Sum_probs=198.0

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCee----eEeeccccCcEEEEEEecCCCEEE
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLA  123 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~  123 (288)
                      ....++..+++.||.++|.+++|...+  ...|++++.|.++++|.++.+..    +....+|...|-++...+++..++
T Consensus       130 Wd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~  209 (423)
T KOG0313|consen  130 WDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC  209 (423)
T ss_pred             EecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEE
Confidence            346788899999999999999887523  23689999999999999987643    233458999999999999999999


Q ss_pred             EEeCCCeEEEEeCCC-------------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 023018          124 SGGLDGLVQIWDPSS-------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA  178 (288)
Q Consensus       124 ~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  178 (288)
                      +|+.|..|.||+..+                         +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+
T Consensus       210 SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  210 SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEe
Confidence            999999999999321                         224556788999999999998 679999999999999999


Q ss_pred             CcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcC-CCCEEEEE
Q 023018          179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSG  254 (288)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  254 (288)
                      .++..+..+. ....+.++.++|...+|++|+.|..|++||.+++.-   ...+.+   |...|.++.|+| +...|++|
T Consensus       289 etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g---H~nwVssvkwsp~~~~~~~S~  364 (423)
T KOG0313|consen  289 ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG---HKNWVSSVKWSPTNEFQLVSG  364 (423)
T ss_pred             ecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec---chhhhhheecCCCCceEEEEE
Confidence            9999888877 456799999999999999999999999999998743   344444   888999999999 55778899


Q ss_pred             eCCCcEEEEEcCCCc-EEEEecceEEEEEeecc
Q 023018          255 SKDGSVHMVNITTGK-VCCLNFQYTCVAYDLDF  286 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~-~~~~~~~~~~~~~~~df  286 (288)
                      +.|+++++||+++.+ ++..+.++..-+|+.||
T Consensus       365 S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW  397 (423)
T KOG0313|consen  365 SYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW  397 (423)
T ss_pred             ecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence            999999999999988 89999888888888877

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-32  Score=207.93  Aligned_cols=211  Identities=25%  Similarity=0.404  Sum_probs=190.6

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee--------ccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------QGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      .+..+.+-|..|+| ++++|++|+.||.|.+|++.+++..+.+        --+..+|.|+.|+.+...+|+|+.||.|+
T Consensus       210 Fg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            45667899999999 8999999999999999999998765543        23678999999999999999999999999


Q ss_pred             EEeCCCCceeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          133 IWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       133 i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +|.+.+|.+++.|. .|...|+++.|+.++..+++++.|.++++.-+++|++++.+++|.+.|+...|+++|.++++++.
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            99999999999987 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ||+|++|+.++..++.++.... ...+|.++..-| +...++++...++|+|-++. |+.++.+
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf  430 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF  430 (508)
T ss_pred             CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence            9999999999999998887654 567888888888 56788888899999999986 6666665

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-31  Score=225.71  Aligned_cols=212  Identities=18%  Similarity=0.321  Sum_probs=177.7

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--------------------------------C------------
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G------------   97 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~------------   97 (288)
                      +|.++|+++.|++ ++++||+|+.||.|+||.+..                                .            
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            7999999999999 899999999999999999855                                0            


Q ss_pred             ----------------eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-C
Q 023018           98 ----------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-R  160 (288)
Q Consensus        98 ----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~  160 (288)
                                      ++++.+.+|.+.|.++.|+.++ +|++++.|.+|++|++....++..|. |...|+|++|+| +
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence                            1334457899999999999764 89999999999999999999999887 888999999999 8


Q ss_pred             CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-----Ccc
Q 023018          161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH-----PYH  235 (288)
Q Consensus       161 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  235 (288)
                      .++|++|+-||.|+||++...+.+.- .....-|++++|.|+|++.++|+.+|.+++|+....+........     ...
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             CCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence            88999999999999999987765544 444578999999999999999999999999999876654433221     111


Q ss_pred             ccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecce
Q 023018          236 TEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQY  277 (288)
Q Consensus       236 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~  277 (288)
                      ...|+.+.|.| +...|++.+.|..|+|||+++.+++..+.++
T Consensus       501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~  543 (712)
T KOG0283|consen  501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF  543 (712)
T ss_pred             CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence            23799999998 4455777789999999999888888877543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9e-30  Score=232.12  Aligned_cols=203  Identities=23%  Similarity=0.366  Sum_probs=179.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ...|.+++|+|..+.+||+++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            467999999986778999999999999999999999999999999999999997 7889999999999999999999888


Q ss_pred             EEeccCCCCEEEEEEc-CCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          143 CTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      ..+..+ ..+.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|+.|++||+
T Consensus       612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence            887754 579999995 478999999999999999998765 567778899999999997 6789999999999999999


Q ss_pred             CCC------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          221 KSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       221 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      +.+      ..+..+.+   |...+..++|+|++.+|++|+.||.|++|+...+.++
T Consensus       690 ~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        690 SMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             CCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            743      45566665   6788899999999999999999999999998776544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-31  Score=210.75  Aligned_cols=220  Identities=28%  Similarity=0.425  Sum_probs=189.8

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  138 (288)
                      +......|.++.|.. ++.++|+|...|.|+|+|+.+...+..+.+|..++..+.|+|++. .|++|+.|+.+++||+.+
T Consensus        64 ~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             HHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            334567899999998 899999999999999999777667888999999999999999665 677888899999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      ......+.+|...|++.+|+|. +.++++|+.||.|++||++.. ..+..+. |..+|..+.+.|.|..+++++ ...++
T Consensus       143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vk  220 (487)
T KOG0310|consen  143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVK  220 (487)
T ss_pred             cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence            9887789999999999999994 558999999999999999987 5566665 999999999999999999987 46799


Q ss_pred             EEeCCCCcee-EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          217 VWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       217 i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      |||+.+|... ..+..   |...|+|+++..++..|++|+-||.|++||+.+-+.+...   .++.+++.+|+
T Consensus       221 VWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d  290 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD  290 (487)
T ss_pred             EEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCC
Confidence            9999866543 33333   7889999999999999999999999999999988888766   56777777764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.8e-31  Score=226.15  Aligned_cols=222  Identities=23%  Similarity=0.371  Sum_probs=198.2

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      .+...+..|..++|+| ....+.++-..|.|.+||++-+.++..|..|.++|..++|+|.+.+|++|+.|-.|++|+..+
T Consensus         4 kfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            4455677899999999 777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      .+++.++.+|-..|+.+.||+.-.+|++++.|.+|+||+..+++++..+++|...|+|..|+|....+++++.|.+||||
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCce-----------------------------eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          219 NPKSGEN-----------------------------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       219 d~~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      |+...+.                             ...+   .+|..+|+.++|+|.-.++++|+.|..|++|.+..-+
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL---EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL---EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee---cccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9853111                             0122   2388999999999999999999999999999997654


Q ss_pred             EEE------EecceEEEEEee
Q 023018          270 VCC------LNFQYTCVAYDL  284 (288)
Q Consensus       270 ~~~------~~~~~~~~~~~~  284 (288)
                      .-.      .+..++++.|.|
T Consensus       240 aWEvDtcrgH~nnVssvlfhp  260 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHP  260 (1202)
T ss_pred             ceeehhhhcccCCcceEEecC
Confidence            333      235677777776

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=3.8e-30  Score=191.28  Aligned_cols=226  Identities=22%  Similarity=0.323  Sum_probs=202.0

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ...+++|.+.|-.++|+|....++++++.|.+|++||++.+++...+....+.+. +.|+|+|.+++++..|..|.+.|.
T Consensus        57 ~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   57 ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDA  135 (313)
T ss_pred             hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEe
Confidence            3456899999999999998999999999999999999999999998875555554 889999999999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      ++.+.....+.. -.+.-++|+-.+.+++..+..|.|.|.....-+++..+++|.....||.|+|+|++|++|+.|..+.
T Consensus       136 r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  136 RTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             cccceeehhccc-ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence            998877766533 3578889997778888777889999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeeccc
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLDFV  287 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~df~  287 (288)
                      +||+...-+.+.+..   +..+|+.+.|+-+|++|+++++|..|-|-++.||..+..+   .+...++|.|..-
T Consensus       215 LWD~~ELiC~R~isR---ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~  285 (313)
T KOG1407|consen  215 LWDVDELICERCISR---LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRP  285 (313)
T ss_pred             ccChhHhhhheeecc---ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCc
Confidence            999998888888877   7889999999999999999999999999999999999877   5677888877643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.1e-31  Score=205.89  Aligned_cols=234  Identities=23%  Similarity=0.433  Sum_probs=186.3

Q ss_pred             CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEE
Q 023018           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      ....|.+..+++..|++.|+-+.|++ ++++||+++.|.+..+|.+...   +..+++.+|..+|..+.|+||.++|++|
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence            45577788899999999999999999 8999999999999999998654   4577888999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee----------------
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------------  188 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------  188 (288)
                      +.+..+.+||..+|.....+... ...+.+++|.|+|..+++|+.|+++..||+... .+..+.                
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC
Confidence            99999999999999988877643 567999999999999999999999999998532 111111                


Q ss_pred             --------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018          189 --------------------------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (288)
Q Consensus       189 --------------------------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (288)
                                                ....+|++++.|.+++++++.-.+..+++||+.....++.+.++.....-|. -
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr-S  445 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR-S  445 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE-e
Confidence                                      1234566666666666666666666777777776666666666543333333 3


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          243 TISA-DSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       243 ~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      +|.- +..++++|++|+.|+||+..+|+++..+    ..+.+++|+|.
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence            4543 5589999999999999999999999999    45677887774

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=2.5e-30  Score=204.50  Aligned_cols=215  Identities=21%  Similarity=0.346  Sum_probs=192.9

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      +...++.+.+|.||+..|+.+.++| ....+++++.|..|+||.............|..+|+.+..+|.|.||++++.||
T Consensus       247 d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~  325 (506)
T KOG0289|consen  247 DKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDG  325 (506)
T ss_pred             ecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCc
Confidence            3455677889999999999999999 788899999999999999998887788888999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          130 LVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      +..+.|++++..+.....  ..-.+++.+|||+|.+|.+|+.||.++|||+.++..+..|.+|.++|..++|+.+|-+|+
T Consensus       326 ~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~La  405 (506)
T KOG0289|consen  326 TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLA  405 (506)
T ss_pred             eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEE
Confidence            999999999998877654  233589999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +++.|+.|++||+|..+...++...  ....+.++.|.+.|.+|+.++.+=+|++++-.+
T Consensus       406 t~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  406 TAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             EEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence            9999999999999988888877754  334799999999999999998877777776443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.8e-29  Score=204.06  Aligned_cols=217  Identities=24%  Similarity=0.432  Sum_probs=192.7

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeC--C--
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGL--D--  128 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d--  128 (288)
                      ....++.+|..+++-..|+| .+.++|+|...|.|+||+.....  +..+++...++|.+++|+.++++|++.+.  +  
T Consensus        50 ~~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf  128 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF  128 (603)
T ss_pred             cceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence            34778899999999999999 78899999999999999987643  33456777899999999999998877753  2  


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      |.+.+|  .++...-.+.+|...|.++.|-|.-. .+++|+.|+.|.+|.-.-.+...+++.|...|.++.|+|+|.+++
T Consensus       129 g~~F~~--DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa  206 (603)
T KOG0318|consen  129 GHVFLW--DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA  206 (603)
T ss_pred             eEEEEe--cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence            345555  56677888999999999999999544 899999999999999877787888889999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +++.||++.+||-.+|+.+..+.....|.+.|.+++|+||+..+++++.|.+++|||+.++++++++
T Consensus       207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            9999999999999999999999977779999999999999999999999999999999999999877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.1e-29  Score=228.63  Aligned_cols=210  Identities=21%  Similarity=0.338  Sum_probs=180.4

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCCEEEEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~  132 (288)
                      .+.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|+ +++.+|++|+.||.|+
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence            45677888999999999999867889999999999999999998888888744 688999995 4688999999999999


Q ss_pred             EEeCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc------ccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          133 IWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------AAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       133 i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      +||+++.+ .+..+.+|...|.++.|. ++..|++++.|++|++||++.      ..++..+.+|...+.+++|+|++.+
T Consensus       644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~  722 (793)
T PLN00181        644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY  722 (793)
T ss_pred             EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence            99998765 466778899999999997 678999999999999999974      3567888899999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcC----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRG----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      |++|+.|+.|++|+.....++..+..          ...+...|.+++|+|++..|++|+.+|.|+||++
T Consensus       723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999999999876544332210          0114456999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3e-32  Score=210.17  Aligned_cols=204  Identities=25%  Similarity=0.444  Sum_probs=182.4

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ....|+|+.+.   ...+++|..|.+|+|||..+..++..+.+|.+.|.|+.|.  .+.|++|+.|.+|++||..+++++
T Consensus       196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence            34679999985   3577899999999999999999999999999999999994  569999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      .++-.|...|..+.|+  ..++++++.|.+|.+||+....   +.+.+.+|...|..+.|+  .+++++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence            9999999999999996  5699999999999999998764   446677999999999996  56999999999999999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV  280 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~  280 (288)
                      +.++..++++.+   |..+|-|+.+  .++++++|++|.+|++||+..|+++..+.++..+
T Consensus       347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL  402 (499)
T KOG0281|consen  347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL  402 (499)
T ss_pred             ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence            999999999988   7888888887  4889999999999999999999999998665433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=190.80  Aligned_cols=212  Identities=22%  Similarity=0.348  Sum_probs=177.3

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC--EEEEEeC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGL  127 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~  127 (288)
                      ....-.++..+..|.++|++++.+   +.++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+...  .|++|+.
T Consensus        29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence            344456788899999999999985   57999999999999999999998899989999999999998765  8999999


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-----------------
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-----------------  190 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------  190 (288)
                      ||.|.+|+......+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.-......                 
T Consensus       106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999766532222110                 


Q ss_pred             ----------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE--cC
Q 023018          191 ----------------------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SA  246 (288)
Q Consensus       191 ----------------------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~  246 (288)
                                            ...+.++.|. ++.+|++|..++.|.+||.....+...+..   |..+|-.+.+  .|
T Consensus       186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A---H~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA---HENRVKDIASYTNP  261 (362)
T ss_pred             EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec---chhheeeeEEEecC
Confidence                                  1113333333 456788888888999999888777777776   7888888874  35


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC
Q 023018          247 DSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ++.+|+++++||.|++||+...
T Consensus       262 ~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  262 EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CceEEEEeccCceEEEEEcccc
Confidence            7789999999999999999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=217.05  Aligned_cols=216  Identities=26%  Similarity=0.440  Sum_probs=194.5

Q ss_pred             CCCCCCCeeE-eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           50 TEQPDDSTHI-FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        50 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      .......+.. +.||.+.|+++++.. .+.++++|+.|.++++||..++++...+.+|...|.++...  ..++++|+.|
T Consensus       234 ~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D  310 (537)
T KOG0274|consen  234 DLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRD  310 (537)
T ss_pred             ecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCC
Confidence            3345566666 899999999999987 78899999999999999999999999999999999998874  4478889999


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      .+|++|++.++..+..+.+|.++|+++..+  +.++++|+.|++|++|++.++++++.+.+|...|.++.+.+. .++++
T Consensus       311 ~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S  387 (537)
T KOG0274|consen  311 NTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS  387 (537)
T ss_pred             ceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe
Confidence            999999999999999999999999999997  789999999999999999999999999999999999988754 89999


Q ss_pred             EeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018          209 GSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      |+.|+.|++||+++. +++.++.+   |..-+..+.+  .+++|++++.||.|++||..++++++++..
T Consensus       388 gs~D~~IkvWdl~~~~~c~~tl~~---h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  388 GSLDTTIKVWDLRTKRKCIHTLQG---HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             eeeccceEeecCCchhhhhhhhcC---Cccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            999999999999999 88888887   5566655544  577999999999999999999999999865

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.2e-28  Score=210.12  Aligned_cols=200  Identities=18%  Similarity=0.302  Sum_probs=160.6

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee-------------EeeccccCcEEEEEEec-CCCEEEEEeCCCeE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDGLV  131 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i  131 (288)
                      .|.....++ ++..+++++.+.....|+...+..+             ..+.+|.+.|++++|+| ++.+|++|+.||+|
T Consensus        22 ~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         22 NVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             ccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            344444555 4334455555566666664332211             23678999999999999 78899999999999


Q ss_pred             EEEeCCCC-------ceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          132 QIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       132 ~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      ++||+.++       ..+..+.+|...|.+++|+|.+ ++|++++.|++|++||+++++.+..+..|...|.+++|+|++
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence            99999765       3466788899999999999975 699999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc-CeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCc
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE-GLTCLTISADSTLALSGS----KDGSVHMVNITTGK  269 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~t~~  269 (288)
                      .+|++++.|+.|++||+++++.+..+..+   .. .+..+.|.+++..|++++    .|+.|++||+++..
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecC---CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999999999999999999988887763   33 345678899877777654    47899999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-30  Score=216.81  Aligned_cols=213  Identities=19%  Similarity=0.332  Sum_probs=182.5

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec-CCCEEEEEeCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLD  128 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  128 (288)
                      .....+|++.|.||.+.|..|+|+.  .++|++++.|.+|++|++....+++.|. |..-|+|++|+| |.+||++|+-|
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD  431 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD  431 (712)
T ss_pred             ccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence            4455789999999999999999996  4578899999999999999999999998 999999999999 67799999999


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--------cCCCeEEEEEc
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFT  200 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~  200 (288)
                      |.|+||++...++..-...+ .-|++++|.|+|+..++|+.+|.+++|++...+....+..        ....|+.+.|.
T Consensus       432 ~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  432 GKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             cceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence            99999999988876655544 6799999999999999999999999999988776654431        12379999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       201 p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      | +...+++.+.|..|||||.+...++..+.+...... -....|+.||++|++++.|..|++|++..
T Consensus       511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            8 445677788899999999988888888887653333 35668899999999999999999999844

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.9e-29  Score=186.49  Aligned_cols=213  Identities=20%  Similarity=0.353  Sum_probs=184.8

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC----
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----  127 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----  127 (288)
                      ..+..+-++.||+++|+|+.... +...+++|+.|.++++||+.+++.+..+. ...+|..+.|++.|++++.+..    
T Consensus        40 ~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg  117 (327)
T KOG0643|consen   40 LNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMG  117 (327)
T ss_pred             cCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcC
Confidence            45677889999999999999998 78899999999999999999999999998 6789999999999998777643    


Q ss_pred             -CCeEEEEeCC-------CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEE
Q 023018          128 -DGLVQIWDPS-------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       128 -dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~  198 (288)
                       .+.|.++|++       ...+...+..+.+.++..-|.|-+..|++|..+|.|.+||.+++ +.+.....|...|+.|.
T Consensus       118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q  197 (327)
T KOG0643|consen  118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ  197 (327)
T ss_pred             cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc
Confidence             4789999998       44567778888899999999999999999999999999999998 45566678999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-----------------------------------------------
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-----------------------------------------------  231 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------------------------------  231 (288)
                      ++|+..++++++.|.+-++||..+.+.++++..                                               
T Consensus       198 ~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e  277 (327)
T KOG0643|consen  198 FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE  277 (327)
T ss_pred             ccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence            999999999999999999999987655433221                                               


Q ss_pred             -----CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          232 -----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       232 -----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                           ...|-++|++++|+|+|+..++|+.||.|++.-+.
T Consensus       278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                 12377899999999999999999999999997654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.4e-30  Score=198.24  Aligned_cols=222  Identities=21%  Similarity=0.310  Sum_probs=200.4

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCC
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      +.+-+....+.-+..+|.|+.|+. +..++|+|+.||.|++|.+.++.++..+. .|...|+|+.|+.++..+++++.|.
T Consensus       250 DLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~  328 (508)
T KOG0275|consen  250 DLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQ  328 (508)
T ss_pred             hhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccc
Confidence            344444556667889999999999 88899999999999999999999999997 7999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCeEEEEEcC-CCCEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTP-DGKTI  206 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p-~~~~l  206 (288)
                      ++++.-+.+|+.++.+++|.+.|+...|.++|..+++++.||+|++|+.++..++.+++.  ...+|..+..-| +...+
T Consensus       329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             eEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence            999999999999999999999999999999999999999999999999999999988874  345788888877 66789


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|...++|+|-++. |+.++.+....-..+...+++.+|.|.++++.+.|+.++.|.+.+|++-.++
T Consensus       409 iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  409 IVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             EEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence            999999999999985 7888888766556667788899999999999999999999999999988877

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=8.9e-30  Score=202.34  Aligned_cols=214  Identities=22%  Similarity=0.370  Sum_probs=181.7

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-------eeEeeccccCcEEEEEEecC-CCEEEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------WASEIQGHKDSVSSLAFSMD-GQLLAS  124 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~  124 (288)
                      .-.|...|.||++.-++|+|++...-.+++++.|++|++||+....       +...+.+|...|..++|++. ..+|++
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence            4466779999999899999999888899999999999999997532       45567899999999999985 457889


Q ss_pred             EeCCCeEEEEeCC--CCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEc
Q 023018          125 GGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       125 ~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~  200 (288)
                      ++.|+.+.|||++  +.+......+|.+.+.|++|+| ++..||+|+.|++|++||+|+. +++.++.+|...|.++.|+
T Consensus       246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence            9999999999999  5667777888999999999999 6678999999999999999985 5788999999999999999


Q ss_pred             CC-CCEEEEEeCCCeEEEEeCCCCc-----------eeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcC
Q 023018          201 PD-GKTICTGSDDATLRVWNPKSGE-----------NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       201 p~-~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~  266 (288)
                      |. ...|++++.|+.+.|||+..-.           +...+..|.+|...|..+.|+|.. -.|++.+.|+.+.||.+.
T Consensus       326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            94 5678999999999999986321           122334455589999999999965 456788899999999986

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.2e-28  Score=208.01  Aligned_cols=188  Identities=16%  Similarity=0.251  Sum_probs=158.2

Q ss_pred             EeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCc--------eeEEeccCCCCEE
Q 023018           83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVE  153 (288)
Q Consensus        83 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~  153 (288)
                      |+.++.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            566789999999888888889999999999999996 7899999999999999997642        2345778999999


Q ss_pred             EEEEcCCCCE-EEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 023018          154 WVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       154 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (288)
                      +++|+|++.. |++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 5788999999999999998777775 5678999999999999999999999999999999988888774


Q ss_pred             CccccCe-----EEEEEcCCCCEEEEEeCCC----cEEEEEcCC-CcEEEEe
Q 023018          233 PYHTEGL-----TCLTISADSTLALSGSKDG----SVHMVNITT-GKVCCLN  274 (288)
Q Consensus       233 ~~~~~~v-----~~~~~~~~~~~l~~~~~dg----~i~iwd~~t-~~~~~~~  274 (288)
                         ...+     ....|++++.+|++++.++    .|+|||+++ ++++...
T Consensus       209 ---~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        209 ---DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             ---cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence               4333     2334568888999887764    799999995 5666554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.4e-29  Score=195.03  Aligned_cols=206  Identities=23%  Similarity=0.432  Sum_probs=179.0

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-------------------------CeeeEeeccccC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------------------------GDWASEIQGHKD  108 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~~  108 (288)
                      .+.++.-+||..+|-+++..+ ++..+++|+.|..|.||+..+                         ..++..+.+|..
T Consensus       183 ~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  183 VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence            344455559999999999999 888999999999999999321                         235667889999


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEE
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLN  185 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~  185 (288)
                      +|.++.|++ ...+++++.|.+|+.||+.+++....+.+.. .+.++.++|..++|++|+.|..|++||.|++.   ..+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~  339 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ  339 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc-ceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence            999999997 6689999999999999999999888887554 59999999999999999999999999999863   557


Q ss_pred             EeeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          186 MFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       186 ~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      ++.+|...|.++.|+|. ...|++++.|+++++||+|+.. ++..+.+   |...|.++.|.. +..|++|+.|.+|+|+
T Consensus       340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~---h~DKvl~vdW~~-~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG---HNDKVLSVDWNE-GGLIVSGGADNKLRIF  415 (423)
T ss_pred             eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc---CCceEEEEeccC-CceEEeccCcceEEEe
Confidence            78899999999999994 5568999999999999999877 7888887   789999999985 6689999999999998


Q ss_pred             EcC
Q 023018          264 NIT  266 (288)
Q Consensus       264 d~~  266 (288)
                      .-.
T Consensus       416 ~~~  418 (423)
T KOG0313|consen  416 KGS  418 (423)
T ss_pred             ccc
Confidence            643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=6.2e-29  Score=196.63  Aligned_cols=216  Identities=21%  Similarity=0.369  Sum_probs=194.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..|+++...| ....+.+|+.|..+.++|....+.+..+.+|...|+.+.|+|+...+++++.|..|+||..........
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            4688888888 467888999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ...|..+|+.+..+|.|.+|++++.||+..+.|++++..+......  .-.+++.+|+|||..|.+|..||.|+|||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            8899999999999999999999999999999999999888776642  34589999999999999999999999999999


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEee
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDL  284 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~  284 (288)
                      +..+..|.+   |.++|..++|+.+|.+|++++.|+.|++||++.-+..+++     +++..+.|.+
T Consensus       379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~  442 (506)
T KOG0289|consen  379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ  442 (506)
T ss_pred             ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence            887777777   8999999999999999999999999999999998877766     3455555543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7e-29  Score=197.90  Aligned_cols=215  Identities=23%  Similarity=0.328  Sum_probs=186.7

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-----
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-----  137 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----  137 (288)
                      -.++|.|++-+| .+.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+|++|+.||.|.+|.+.     
T Consensus        80 ~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   80 LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            457899999999 88899888899999999999999999999999999999999999999999999999999763     


Q ss_pred             ----CCceeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          138 ----SGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       138 ----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                          +-++++.+..|.-+|+.+...+.  ..++++++.|.++++||+..+.++.++. ....+.+++..|-++.+++|+.
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence                34677888999999999998774  3589999999999999999998888876 6678999999999999999999


Q ss_pred             CCeEEEEeCCCCc----------------eeEEEcCCCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          212 DATLRVWNPKSGE----------------NIHVIRGHPYHTE--GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       212 dg~i~i~d~~~~~----------------~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      +|.|.+.++....                .+..+.+   |..  +|+|++++-||.+|++|+.||.|.|||+.+.+++++
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G---h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG---HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeecc---ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            9999988875432                2233334   555  899999999999999999999999999999999887


Q ss_pred             ec----ceEEEEE
Q 023018          274 NF----QYTCVAY  282 (288)
Q Consensus       274 ~~----~~~~~~~  282 (288)
                      +.    +++.+.+
T Consensus       315 l~~~kgpVtnL~i  327 (476)
T KOG0646|consen  315 LQTSKGPVTNLQI  327 (476)
T ss_pred             HhhhccccceeEe
Confidence            73    4555544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=186.84  Aligned_cols=224  Identities=18%  Similarity=0.314  Sum_probs=176.8

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-Ceee-EeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      ....+.|.+|+|+|....++++|+.||+|++|++.. +..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            345678999999998788898999999999999987 3333 33456899999999999999999999999999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCC--EEEEecCCCeEEEEECCcccEEEEeec---------------------------
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSG---------------------------  189 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------  189 (288)
                      ++ ...+..|.++|..+.|-+...  .|++|+.|++|++||+|+..++.++..                           
T Consensus       104 ~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn  182 (347)
T KOG0647|consen  104 GQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN  182 (347)
T ss_pred             CC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence            95 556677999999999988555  899999999999999998776554421                           


Q ss_pred             --------------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCc------cccCeEEEEEcCC
Q 023018          190 --------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPY------HTEGLTCLTISAD  247 (288)
Q Consensus       190 --------------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~------~~~~v~~~~~~~~  247 (288)
                                    .+-.++|++..++.+..+.|+-.|.+.|..+..+  ..-.+++.|..      .-..|++++|+|.
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~  262 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV  262 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence                          1234677787777777788888888888877665  33344444321      1346889999998


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          248 STLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ...|++++.||++.+||-.....++..    .++++..|+.+
T Consensus       263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~  304 (347)
T KOG0647|consen  263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN  304 (347)
T ss_pred             cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence            889999999999999998877766664    55666666543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.2e-28  Score=195.87  Aligned_cols=208  Identities=21%  Similarity=0.392  Sum_probs=176.7

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------eeEeeccccCcEEEEEEecCCC-EEEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDGQ-LLASG  125 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~-~l~~~  125 (288)
                      +...--|.+.|+.+++.|++..++|+++..+.|+|||..+..          +-.++.+|...-+.++|++... .|+++
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            334456999999999999999999999999999999986521          2236788988778999998655 79999


Q ss_pred             eCCCeEEEEeCCCCc-------eeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECC--cccEEEEeeccCCCeE
Q 023018          126 GLDGLVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVT  195 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~  195 (288)
                      +.|+.|++||+....       ....+.+|...|..++|++ ....|++++.|+.+.|||+|  +.++.....+|.+++.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            999999999997543       3456788999999999999 55688999999999999999  5567777889999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 023018          196 CGDFTP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       196 ~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t  267 (288)
                      |++|+| ++..||+|+.|++|++||+|+.. ++..+.+   |...|.++.|+|+ ..+|++++.|+.+.+||+..
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            999999 66678999999999999999764 4555555   8899999999994 57889999999999999975

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.6e-29  Score=187.01  Aligned_cols=231  Identities=22%  Similarity=0.377  Sum_probs=206.9

Q ss_pred             CCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC
Q 023018           48 ENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        48 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      ......+.=+-++.||.++|+...++. +....|+++.|-+-++||.-++..+..+. |+.-|.+++|+.+..+|++|+.
T Consensus        43 lr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~  120 (334)
T KOG0278|consen   43 LRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQ  120 (334)
T ss_pred             hccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccch
Confidence            344456777899999999999999998 88889999999999999999999999997 9999999999999999999999


Q ss_pred             CCeEEEEeCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +..++|||++..+ +...+.+|.+.|..+-|....+.|++++.|++|++||.++++.++++. ...+|+++.++++|++|
T Consensus       121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRIL  199 (334)
T ss_pred             HHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEE
Confidence            9999999998764 556788999999999999988999999999999999999999999987 67899999999999888


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEE
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVA  281 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~  281 (288)
                      .++. .+.|.+||..+..+++.+.    -...|.+..++|+...+++|+.|+.++.||..||..+..+     .++.|+.
T Consensus       200 Tia~-gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr  274 (334)
T KOG0278|consen  200 TIAY-GSSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR  274 (334)
T ss_pred             EEec-CceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE
Confidence            7664 6789999999988888776    4567899999999999999999999999999999988875     6788999


Q ss_pred             Eeecc
Q 023018          282 YDLDF  286 (288)
Q Consensus       282 ~~~df  286 (288)
                      |+||-
T Consensus       275 FSPdG  279 (334)
T KOG0278|consen  275 FSPDG  279 (334)
T ss_pred             ECCCC
Confidence            99874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-28  Score=195.31  Aligned_cols=208  Identities=23%  Similarity=0.383  Sum_probs=183.9

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~  132 (288)
                      ..-+..+.+|+.+|..+.|+|++..++++|+.|+.+++||+.+......+.+|+..|.|.+|+|... .+++|+.||.|+
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr  179 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR  179 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence            3456778899999999999999999999999999999999999887778999999999999999655 889999999999


Q ss_pred             EEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          133 IWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +||++.. ..+..+. |..+|..+.+-|.|..|++++. ..|++||+-+| +.+..+..|...|+|+++..++..|++++
T Consensus       180 l~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s  257 (487)
T KOG0310|consen  180 LWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS  257 (487)
T ss_pred             EEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence            9999987 5555555 8889999999999999999887 78999999855 55555555999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      -|+.+++||+.+.+.+..+.    ..++|.+++.+|+++.++.|..+|.+.+=+...
T Consensus       258 LD~~VKVfd~t~~Kvv~s~~----~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  258 LDRHVKVFDTTNYKVVHSWK----YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             cccceEEEEccceEEEEeee----cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            99999999988888888877    678999999999999999999999888764433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=7.2e-29  Score=183.58  Aligned_cols=213  Identities=25%  Similarity=0.415  Sum_probs=185.5

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ...+..++.|. |..-|.+++|+. +..+|++|+.+..++||+++.. .+...+.+|.+.|..+.|....+.|++++.|+
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            34455555553 788899999998 7788889999999999999874 45667889999999999999888999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +|++||.+++..++++.. ..+++++.++++|++|.++.. +.|.+||..+..+++.++ ....|.+..++|+...+++|
T Consensus       166 tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             ceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-CccccccccccCCCceEEec
Confidence            999999999999998874 457999999999987766654 889999999998888877 45678999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEE-cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          210 SDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      +.|..++.||..++..+..+ .+   |.++|.|+.|+|+|...++|+.||+|++|.+..++..
T Consensus       243 ged~~~~kfDy~TgeEi~~~nkg---h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSYNKG---HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CcceEEEEEeccCCceeeecccC---CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999988775 44   8899999999999999999999999999999877654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.5e-28  Score=211.54  Aligned_cols=230  Identities=22%  Similarity=0.315  Sum_probs=198.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------------------CeeeEeeccccCcEEEEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA  114 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~i~~~~  114 (288)
                      -.+.+..+..|.+.|+|+.|+| ++.+||+|+.|+.|.||....                  .+.+..+.+|...|..++
T Consensus        58 l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~  136 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN  136 (942)
T ss_pred             cchhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence            4677788899999999999999 899999999999999999872                  135677889999999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc----
Q 023018          115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----  190 (288)
Q Consensus       115 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----  190 (288)
                      |+|++.+|++++.|++|.||+..+.+.+..+.+|.+.|..+.|.|-|++||+-+.|++|++|.+.+....+.+..+    
T Consensus       137 Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  137 WSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             cCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999998776666666543    


Q ss_pred             --CCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----CC----------
Q 023018          191 --GSSVTCGDFTPDGKTICTGSD----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----ST----------  249 (288)
Q Consensus       191 --~~~i~~~~~~p~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~----------  249 (288)
                        ...++.+.|+|||.+|++...    -..+.|.+..+.+.-..+-+   |..++.++.|+|.     ..          
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG---H~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG---HSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec---CCCceEEEEeChHHhccccccCCccCCCcc
Confidence              346789999999999988642    33688888877776667777   7789999999981     12          


Q ss_pred             --EEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeecc
Q 023018          250 --LALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLDF  286 (288)
Q Consensus       250 --~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df  286 (288)
                        .+++|+.|+.|.||.....+++...     ..+..+.|+||-
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG  337 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG  337 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC
Confidence              6788999999999999999988876     567788888774

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=190.79  Aligned_cols=209  Identities=19%  Similarity=0.317  Sum_probs=169.5

Q ss_pred             CeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccC----------------CeeeEeeccccCcEEEEEEecC
Q 023018           56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFSMD  118 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~i~~~~~~~~  118 (288)
                      .....-+|.+.+..+.-.+. +..+.|+-+..|.|+||++..                .+++.++.+|...=+.++|+|-
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence            33445567778888887775 456777788899999999843                3567788899999999999993


Q ss_pred             C-CEEEEEeCCCeEEEEeCCCCceeE---EeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCccc--EEEEeeccC
Q 023018          119 G-QLLASGGLDGLVQIWDPSSGNLKC---TLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHG  191 (288)
Q Consensus       119 ~-~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~  191 (288)
                      . ..|++|..-+.|++|...++....   .|.+|...|-.++|+|. ...|++|+.||+|+|||+|.+.  .....+.|.
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~  302 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN  302 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence            2 258888888899999988875432   35568899999999994 4589999999999999999872  223337899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +.|+.|.|+....+|++|+.||+++|||+++-   +++..+.-   |..+|+++.|+| +...|++++.|.+|.+||+..
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999999998889999999999999999864   44555554   899999999999 457788889999999999964

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=194.14  Aligned_cols=210  Identities=23%  Similarity=0.406  Sum_probs=174.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      -+..+++.+|..+|.-+.|+| +.++|++|+.+..+.+||..++.....+.. +...+.+.+|.|||..+++|+.|+.|.
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~  337 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII  337 (519)
T ss_pred             eeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence            566889999999999999999 677888888889999999999998877763 457889999999999999999999999


Q ss_pred             EEeCCCCc----------------------eeEEe-------------------ccCCCCEEEEEEcCCCCEEEEecCCC
Q 023018          133 IWDPSSGN----------------------LKCTL-------------------EGPGGGVEWVSWHPRGHIVLAGSEDS  171 (288)
Q Consensus       133 i~d~~~~~----------------------~~~~~-------------------~~~~~~i~~~~~~~~~~~l~~~~~dg  171 (288)
                      .||+....                      .+...                   .....+|++++.+.+++++++--.+.
T Consensus       338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q  417 (519)
T KOG0293|consen  338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ  417 (519)
T ss_pred             EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence            99975421                      11000                   01235688888888888888888888


Q ss_pred             eEEEEECCcccEEEEeeccCCC--eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-C
Q 023018          172 TVWMWNADRAAYLNMFSGHGSS--VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-D  247 (288)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  247 (288)
                      .+.+||++..+.++.+.+|+..  +..-+|-- +..++++|+.|+.|+||+..+++++..+.+   |...|++++|+| +
T Consensus       418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG---Hs~~vNcVswNP~~  494 (519)
T KOG0293|consen  418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG---HSKTVNCVSWNPAD  494 (519)
T ss_pred             eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC---CcceeeEEecCCCC
Confidence            8999999888888888888754  33445654 457899999999999999999999999998   789999999999 6


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 023018          248 STLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       248 ~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ..++|+++.||+|+||-...
T Consensus       495 p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHHhhccCCCCeEEEecCCc
Confidence            78899999999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=194.07  Aligned_cols=226  Identities=22%  Similarity=0.338  Sum_probs=195.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ....+|.|..++|+.+.|.+ .+..+++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++|
T Consensus       210 ~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            36778888889999999999 67777788999999999999999999999999999999998776679999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      |+....+..++- +.+.+..|..+  ...+++|-.|+.|++||.++..+......+. .|+++..++++..|.+++.|.+
T Consensus       289 Dl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt  364 (459)
T KOG0288|consen  289 DLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT  364 (459)
T ss_pred             hhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence            999877766654 33456677765  5678899999999999999999998888655 8999999999999999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEEeec
Q 023018          215 LRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~~~d  285 (288)
                      +.+.|+++.+...++....+ .....+.+.|||++.|+++|+.||.|+||++.++++.+.+      ..+.+++|+|.
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            99999999888777765332 2344788999999999999999999999999999999988      24777777764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.8e-29  Score=206.76  Aligned_cols=212  Identities=20%  Similarity=0.429  Sum_probs=185.2

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCe------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC--c
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG--N  140 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~  140 (288)
                      .+..+..++++|++|+.||.|++|++....      .+..+..|...|+++....+++.|++++.|.+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            555666678899999999999999986532      36678889999999999999999999999999999999877  5


Q ss_pred             eeEEeccCCCCEEEEEE-cCCCCEEEEecCCCeEEEEECCccc--EEEE--------ee-ccCCCeEEEEEcCCCCEEEE
Q 023018          141 LKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAA--YLNM--------FS-GHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       141 ~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~--------~~-~~~~~i~~~~~~p~~~~l~~  208 (288)
                      ....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++.  .+..        +. ++..+|++++.++.|..+++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            66778889999999999 7788899999999999999998762  2222        22 67889999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEe
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYD  283 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~  283 (288)
                      |+..+.|++||.++++.+..+.+   |...|..+..++||..++++++||+|++||+...+++.++..+...+|+
T Consensus       189 Ggtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             cCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence            99999999999999999999987   8899999999999999999999999999999999999998666555554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.8e-28  Score=198.51  Aligned_cols=220  Identities=24%  Similarity=0.393  Sum_probs=193.1

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      ....+...|+++.|++ ++.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|+  ...+.+|+.+|.|..+|++
T Consensus       212 l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR  288 (484)
T KOG0305|consen  212 LCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR  288 (484)
T ss_pred             eEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence            3334478999999999 889999999999999999999999999998 99999999997  6689999999999999999


Q ss_pred             CCceeEE-eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEe--CCC
Q 023018          138 SGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGS--DDA  213 (288)
Q Consensus       138 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~--~dg  213 (288)
                      ..+.... +.+|...|..++|++++.++|+|+.|+.+.|||.....++..+..|...|.+++|+| ....||+|+  .|+
T Consensus       289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            8876555 788999999999999999999999999999999988889999999999999999999 667888865  589


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEEcCCCcEEEEecc----eEEEEEeec
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS--GSKDGSVHMVNITTGKVCCLNFQ----YTCVAYDLD  285 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~t~~~~~~~~~----~~~~~~~~d  285 (288)
                      .|++||..++..+..+.    ....|.+|.|++..+-|++  |..++.|.||+..+.+++..+.+    +..++++||
T Consensus       369 ~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             EEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence            99999999999888877    5688999999998765655  44578999999999999888844    445555655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.2e-30  Score=214.65  Aligned_cols=226  Identities=25%  Similarity=0.461  Sum_probs=208.1

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .+.+..|+..|.++..-. ..+.+++|+.|..+-+|.+...-.+..+.+|..+|.++.|++...+|++|+.+|+|++||+
T Consensus        21 ~~~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             chhhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            356667899999999844 7789999999999999999887777789999999999999999999999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      ..++.++.+.+|...+.++.|+|-+.+++.|+.|+.+++||.+...+.+.+.+|...+..+.|+|+|++++.++.|..++
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      |||+..|+....|..   |...+..+.|+|..-+++.|+.|++|++||+.|.+.+...    .++.+..|+++-
T Consensus       180 i~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG  250 (825)
T ss_pred             eeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence            999999998888887   7888999999999999999999999999999998887765    678888888763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=177.80  Aligned_cols=222  Identities=21%  Similarity=0.349  Sum_probs=193.2

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--eccccCcEEEEEEecC-CCEEEEEeCCCeEEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIW  134 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~  134 (288)
                      +.+++|...|.+++|+- ++..|++|+.|+++.+|++...+....  ..+|.+.|-.++|+|. ...|++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            66789999999999999 889999999999999999987755443  4679989999999974 4589999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      |++.+++..........+ -+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....+.-++|+-++.+++.....|.
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence            999999998887655544 58999999999999999999999999988777665 4566788899988888888787899


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      |.|......+++..+..   |.....|+.|+|+|+++++|+.|-.+.+||+...-+++.+    .+++.+.||.|
T Consensus       171 v~ILsypsLkpv~si~A---H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKA---HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             EEEEecccccccccccc---CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence            99999988888888887   7788999999999999999999999999999887666655    78888888865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2e-27  Score=189.36  Aligned_cols=205  Identities=28%  Similarity=0.420  Sum_probs=183.1

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      ++|...|.+++.++ ++++||+|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++....
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            48999999999999 89999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      .+.++.+|.+.|..|.....++.+-+|+.|+++++|++.. .....+.++.+.+-|++|-. ...+++|+.+|.|.+|++
T Consensus       278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence            9999999999999999988888888888999999999943 34456778888999999985 478999999999999999


Q ss_pred             CCCceeEEEcCCCc---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          221 KSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       221 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ...+++.+......         +...|++++..|...++++|+.+|.|++|-+..|
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            98888766543211         1237899999999999999999999999999888

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=8.4e-28  Score=201.79  Aligned_cols=206  Identities=26%  Similarity=0.420  Sum_probs=186.2

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----Ceee--------EeeccccCcEEEEEEecCCCEEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWA--------SEIQGHKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~  124 (288)
                      -..++|.+.|+.++.+| ++..+++|+.|.+|++|++.-     +...        .++. -...|.|+.++|++++|++
T Consensus       448 Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEE
Confidence            34457999999999999 778889999999999999742     1111        1122 4578999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      +--|.+++||-+.+.+....+.+|.-||.|+..+|+++.++||+.|..|++|-+.=|.+-+.+.+|...|+++.|.|...
T Consensus       526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~  605 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH  605 (888)
T ss_pred             EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      .+++++.|+.|+-||-.....++.+.+   |...|++++.+|+|.++++++.|..|++|.-..-
T Consensus       606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~---H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGEKFEEIQKLDG---HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             eEEEecCcceEEeechhhhhhheeecc---chheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            999999999999999988888888888   7788999999999999999999999999996653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=202.56  Aligned_cols=214  Identities=27%  Similarity=0.501  Sum_probs=192.9

Q ss_pred             eEeec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        58 ~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ..+.+ |...+.+..|+.   ..+++++.+.+|++|+..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||
T Consensus       201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            44443 567788888873   4788999999999999999998888 999999999999987678999999999999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      ..++.+...+.+|.+.+.++...  ...+++|+.|.+|++|++.++..+..+.+|..+|+++.++  +.++++|+.|++|
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            99999999999999999998875  4578889999999999999999999999999999999997  8899999999999


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEecceEEEEE
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLNFQYTCVAY  282 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~~~~~~~~~  282 (288)
                      ++||+.+++.++.+.+   |...|.++.+.+. ..+++|+.|+.|++||+.++ +++.++..+..++.
T Consensus       354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~  417 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS  417 (537)
T ss_pred             EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence            9999999999999998   8899999988765 79999999999999999999 99998877766653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.8e-27  Score=180.33  Aligned_cols=210  Identities=23%  Similarity=0.403  Sum_probs=187.7

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      -..++.+..+++|.+-|..+.-+..+..++.+++.||++++||+++...++++. ..-.++++.|...+..+++|+-|+.
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence            356788889999999999999666678899999999999999999988888876 5678999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----cEEEEeeccC----CCeEEEEEcCC
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHG----SSVTCGDFTPD  202 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~----~~i~~~~~~p~  202 (288)
                      |++||++.+.....+.+|..+|+.+..+|+|.++++-+.|.++++||++-.    +++..+.+|.    ......+|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            999999999999999999999999999999999999999999999999853    4567776543    23467789999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      +.++.+|+.|..+++||......+..+++   |...|.++.|+|...+|.+++.|.+|++=.
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpG---h~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPG---HYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCC---cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999988888888888   889999999999999999999999998743

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.4e-29  Score=209.03  Aligned_cols=199  Identities=20%  Similarity=0.355  Sum_probs=171.6

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      .+..+.|+....++|||++..|.|.+||+..   .+.+..|..|...++++.|++.. .+|++|+.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            4567888877789999999999999999987   56667888999999999999854 4889999999999999999998


Q ss_pred             eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          142 KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      ..++.+....|+.++|+| .+..|+++...|.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            888888888899999999 6779999999999999999986 56778889999999999999999999999999999999


Q ss_pred             CCCCce--eEEEcCCCccccCeEEEEEcCCCC-EEEEEeC--CCcEEEEEcCCC
Q 023018          220 PKSGEN--IHVIRGHPYHTEGLTCLTISADST-LALSGSK--DGSVHMVNITTG  268 (288)
Q Consensus       220 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~--dg~i~iwd~~t~  268 (288)
                      ..+...  ..++.    ...+|.++.|.|... .|++++.  |-.|+|||++..
T Consensus       249 ~t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  249 MTDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            976543  33333    567899999999654 4555543  778999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-27  Score=176.85  Aligned_cols=216  Identities=25%  Similarity=0.344  Sum_probs=173.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEecC--CCEEEEEe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMD--GQLLASGG  126 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~  126 (288)
                      .+.+++..|.||++||+.++|. |.-+.+||+++.||.|.||.-.+++.  ......|...|++++|.|.  |-.|++++
T Consensus        44 ~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   44 GQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             CCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee
Confidence            3457889999999999999985 55678999999999999999988754  3456679999999999985  45899999


Q ss_pred             CCCeEEEEeCCCC---ceeEEeccCCCCEEEEEEcCC---C-----------CEEEEecCCCeEEEEECCcc--cEEEEe
Q 023018          127 LDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPR---G-----------HIVLAGSEDSTVWMWNADRA--AYLNMF  187 (288)
Q Consensus       127 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~--~~~~~~  187 (288)
                      .||.|.|.+.+..   ........|.-.+++++|.|.   |           +.|++|+.|..|+||+..++  ..-.++
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence            9999999988754   223345678889999999985   4           57999999999999998775  344568


Q ss_pred             eccCCCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      .+|...|+.++|.|.-    .+|++++.||++.||-...-...............+..+.|++.|++|++++.|+.|.+|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            8999999999999943    469999999999999765221111111111145779999999999999999999999999


Q ss_pred             EcCC
Q 023018          264 NITT  267 (288)
Q Consensus       264 d~~t  267 (288)
                      .-..
T Consensus       284 ke~~  287 (299)
T KOG1332|consen  284 KENV  287 (299)
T ss_pred             EeCC
Confidence            7543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.5e-27  Score=181.73  Aligned_cols=210  Identities=19%  Similarity=0.334  Sum_probs=172.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      -..+++|-.|.++|+++.|+| ...+|++|+.|++|+++|+......+.++  ....+|.++.|+|.|.+|++|..-.++
T Consensus       162 hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~  240 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL  240 (430)
T ss_pred             CceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence            356788999999999999999 78899999999999999997643322222  245689999999999999999999999


Q ss_pred             EEEeCCCCceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccC-CCeEEEEEcCCCCEE
Q 023018          132 QIWDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHG-SSVTCGDFTPDGKTI  206 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~i~~~~~~p~~~~l  206 (288)
                      ++||+.+.+......   +|.+.|+++.+++.+++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+++++
T Consensus       241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            999999987655433   578899999999999999999999999999999999998875 344 478999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCC----------------------------------------------ccccCeE
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHP----------------------------------------------YHTEGLT  240 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------------------------------~~~~~v~  240 (288)
                      ++++.|..+++|.+.++..+....+..                                              .|.+.++
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R  400 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR  400 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence            999999999999999988776554331                                              1555566


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          241 CLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .+.-+|.+..+.+|+.|-.+++|-
T Consensus       401 ~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  401 WIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             EEEeCCCCCceeeecccceeeeee
Confidence            666666666666666666666664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=2.1e-27  Score=179.73  Aligned_cols=213  Identities=20%  Similarity=0.365  Sum_probs=178.1

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------eeEe-----eccccCcEEEEEEec-CCC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASE-----IQGHKDSVSSLAFSM-DGQ  120 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~i~~~~~~~-~~~  120 (288)
                      ....+.|.+.|.++...+..++++++|+.||.|.+||++...          .+..     -.+|+-.|.++.|-| +..
T Consensus        36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            345567999999999999999999999999999999997643          1111     135788899999999 455


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC---CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG  197 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  197 (288)
                      .|.+++.|.++++||..+.+....|+- .+.|.+-+|+|   ..-++|+|..+-.|++.|+.+|..-+.+.+|...|.++
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence            888999999999999999988888774 45699999998   34478888999999999999999999999999999999


Q ss_pred             EEcCCCCE-EEEEeCCCeEEEEeCCCC-ceeEEEcC-----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          198 DFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRG-----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       198 ~~~p~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .|+|...+ |++|+.||.|++||++.. .++..+..           ...|.+.+..++|..++.++++++.|..+++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            99997665 789999999999999854 33333322           234777899999999999999999999999999


Q ss_pred             cCCCcE
Q 023018          265 ITTGKV  270 (288)
Q Consensus       265 ~~t~~~  270 (288)
                      ..+|+-
T Consensus       275 ~~~G~n  280 (397)
T KOG4283|consen  275 MESGRN  280 (397)
T ss_pred             cccCcc
Confidence            988753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.3e-27  Score=195.37  Aligned_cols=209  Identities=25%  Similarity=0.440  Sum_probs=185.0

Q ss_pred             CCCCeeEeec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           53 PDDSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        53 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ..+.+..+.+ |...|-+++|+   ...+.+|+.+|.|..+|++..+.... +.+|...|..++|++++.+||+|+.|+.
T Consensus       248 ~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~  324 (484)
T KOG0305|consen  248 EQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV  324 (484)
T ss_pred             hccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc
Confidence            3455566667 99999999997   46888999999999999998766555 8889999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      +.|||.....+...+..|.+.|.+++|+| ...+||+|+  .|+.|++||+.++..+..+. ..+.|..|.|++..+.|+
T Consensus       325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence            99999988889999999999999999999 667888875  58999999999999888876 567899999999887776


Q ss_pred             EE--eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          208 TG--SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       208 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ++  ..++.|.||+..+.+++..+.+   |...|..++++|+|..+++|+.|.++++|++-..
T Consensus       404 sthG~s~n~i~lw~~ps~~~~~~l~g---H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  404 STHGYSENQITLWKYPSMKLVAELLG---HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EecCCCCCcEEEEeccccceeeeecC---CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            64  4567899999999888888887   8889999999999999999999999999999764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.1e-28  Score=188.73  Aligned_cols=227  Identities=18%  Similarity=0.294  Sum_probs=185.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+....+..++..|.+.|..+++..  ..+++++.|.+|+.
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            3456677999999999999995558899999999999999999999999999999999999976  56788888888888


Q ss_pred             EeCCC--------------------------------------CceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEE
Q 023018          134 WDPSS--------------------------------------GNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVW  174 (288)
Q Consensus       134 ~d~~~--------------------------------------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  174 (288)
                      |-+..                                      ..++..+.-....|.++.|+|.. .+|++|+.|+.|.
T Consensus       134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            86322                                      11222333334568889999944 4777888999999


Q ss_pred             EEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      +||+++..+++.+. ....-..|+|+|.+-.+++|+.|..++.||++...  ..+..+..|...|..+.|+|.|+-+++|
T Consensus       214 LyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  214 LYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             EEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhccc
Confidence            99999999887765 34566889999988789999999999999998654  3344444589999999999999999999


Q ss_pred             eCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          255 SKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      +.|.+|+||.++.+...-.+     +.+.|+.||+|
T Consensus       291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD  326 (433)
T ss_pred             cccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence            99999999999988765544     67888888876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.1e-27  Score=180.05  Aligned_cols=229  Identities=21%  Similarity=0.406  Sum_probs=196.5

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc------cC-----------------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI------NQ-----------------------------   96 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~------~~-----------------------------   96 (288)
                      ....++..+.||.+.|.+++|++ .+.++++++.|++-.||..      ..                             
T Consensus       178 Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  178 ESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             ccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            55788999999999999999999 8889999999999999983      11                             


Q ss_pred             -----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC
Q 023018           97 -----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS  171 (288)
Q Consensus        97 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  171 (288)
                           ..++..+.+|.+.|.+..|...|+.+++++.|.+..+||+.++.++..+.+|....+.++-+|..+++++++.|-
T Consensus       257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence                 014566789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCC
Q 023018          172 TVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADST  249 (288)
Q Consensus       172 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  249 (288)
                      +.++||++.. ..+..|++|...|+++.|..+ ..+++|+.|.+|+|||+++.. ++.++.    ...+++.++.+..+.
T Consensus       337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~  411 (481)
T KOG0300|consen  337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHP  411 (481)
T ss_pred             eeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCc
Confidence            9999999854 567889999999999999864 678999999999999998764 556666    567899999998888


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018          250 LALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       250 ~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      +++.--.+..|++||+...++....    .++..++-+..|
T Consensus       412 iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  412 IIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             eEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence            8888888899999999876655443    455544444444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.8e-29  Score=206.80  Aligned_cols=203  Identities=25%  Similarity=0.428  Sum_probs=186.6

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ....++..|.+|..+|.++.|++ ...+|++|+.+|+|++||+...+.++++.+|...+..+.|+|-+.+++.|+.|+.+
T Consensus        58 ~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~  136 (825)
T KOG0267|consen   58 GKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDL  136 (825)
T ss_pred             cCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccc
Confidence            33445556999999999999999 88899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ++||++...+.+.+.+|...+..+.|+|+|++++.++.|..++|||+..|+.+..|..|.+.+..+.|+|..-.+++|+.
T Consensus       137 ~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~  216 (825)
T KOG0267|consen  137 KIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS  216 (825)
T ss_pred             eehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC
Confidence            99999988899999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                      |+++++||+++-+.+.....   ....|.++.|+|++..+++|....
T Consensus       217 d~tv~f~dletfe~I~s~~~---~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKP---ETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CceeeeeccceeEEeeccCC---ccCCceeeeecCCceeeecCchhh
Confidence            99999999997776655544   567899999999999988886543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-27  Score=182.86  Aligned_cols=211  Identities=25%  Similarity=0.456  Sum_probs=185.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ..++.|.||.+.|+.++... ...++.+++.|.+-+||.++++.++..+.+|.+.|++++|++.+.++++++.|++.+||
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             eehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            45567789999999999887 66699999999999999999999999999999999999999999999999999999999


Q ss_pred             eC------CC----------------------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018          135 DP------SS----------------------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW  174 (288)
Q Consensus       135 d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  174 (288)
                      ..      ..                                  .-++..+.+|.+.|.+..|-..|+.+++++.|.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            61      11                                  013445678889999999999999999999999999


Q ss_pred             EEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      +||++++.++..+.+|....+.++-+|..+++++++.|.+.++||++.  .+..+...++|...|+++.|..+. .+++|
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSg  374 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSG  374 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeec
Confidence            999999999999999999999999999999999999999999999984  333333444489999999999764 56899


Q ss_pred             eCCCcEEEEEcCCCc
Q 023018          255 SKDGSVHMVNITTGK  269 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~  269 (288)
                      +.|.+|++||+++.+
T Consensus       375 SDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMR  389 (481)
T ss_pred             CCCceEEEeeecccc
Confidence            999999999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.2e-27  Score=193.21  Aligned_cols=203  Identities=26%  Similarity=0.346  Sum_probs=165.0

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEeec-----cccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQ-----GHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      +||...++|-+|+|.....++|++.||+++||++...+ .+..+.     +..-+++.++|++++++||+|+.||.|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            47999999999999888999999999999999998643 233332     234578899999999999999999999999


Q ss_pred             eCCCCcee---EEeccCCC--CEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccC--CCeEEEEEcCCCCEE
Q 023018          135 DPSSGNLK---CTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHG--SSVTCGDFTPDGKTI  206 (288)
Q Consensus       135 d~~~~~~~---~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~i~~~~~~p~~~~l  206 (288)
                      +.......   ..-..|..  .|++|.|+++|++|++-+.|+++++||+++. +++....+..  .+-+.++|||+.++|
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI  424 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence            97544322   22234555  8999999999999999999999999999986 4555554432  345778999999999


Q ss_pred             EEEe------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          207 CTGS------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       207 ~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ++|+      ..|.+.+||..+...+..+..   ....|..+.|+|.-+.|++|+.||.+++|==.
T Consensus       425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             EecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            9986      356899999999988888876   46778999999988888999999999987433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4e-25  Score=161.77  Aligned_cols=229  Identities=18%  Similarity=0.318  Sum_probs=181.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-----------e----eeEeeccccCcEEEEEEecC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----------D----WASEIQGHKDSVSSLAFSMD  118 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~----~~~~~~~~~~~i~~~~~~~~  118 (288)
                      -..+.++. .+..|.+++|+| .+.+.|+|+...+++|--+...           +    ..+.-+.|.+.|+|.+|+|.
T Consensus        23 f~~i~~l~-dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             eEEEEEec-chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            34444554 456899999999 7788899999999988765421           1    11223458899999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-----eeEEeccCCCCEEEEEEcC----CCCEEEEec-CCCeEEEEECCcccEEEEee
Q 023018          119 GQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSWHP----RGHIVLAGS-EDSTVWMWNADRAAYLNMFS  188 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  188 (288)
                      |.+|++|+.|.+|++..+....     .-..|.-|.+.|+.++|..    .+.+|++++ .|..|++-|..+++..+.+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            9999999999999998665432     2335677999999999965    344666654 46778888999999999999


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       189 ~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      +|.+.|.++ ++-++-.+++|+.|.+|++||++-...+.++....    .....|.+++..|.|++|++|-.|....+||
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            999999876 44468899999999999999999887777664321    1336799999999999999999999999999


Q ss_pred             cCCCcEEEEe----cceEEEEEeec
Q 023018          265 ITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       265 ~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ++.|+.++.+    ..++++.|+|.
T Consensus       260 irg~r~iq~f~phsadir~vrfsp~  284 (350)
T KOG0641|consen  260 IRGGRMIQRFHPHSADIRCVRFSPG  284 (350)
T ss_pred             eeCCceeeeeCCCccceeEEEeCCC
Confidence            9999999988    45677888763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2e-26  Score=193.63  Aligned_cols=225  Identities=21%  Similarity=0.303  Sum_probs=196.0

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .++++++.  .+-+.+..|.| +.+++++|...|.+.+||+.+...+.+++.|.+.|++++.+|++..+++|+.|.+|++
T Consensus       404 ~kciRTi~--~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf  480 (888)
T KOG0306|consen  404 LKCIRTIT--CGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF  480 (888)
T ss_pred             cceeEEec--cccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence            44444444  34788999999 8889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCC-----Ccee--------EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEc
Q 023018          134 WDPSS-----GNLK--------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       134 ~d~~~-----~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  200 (288)
                      ||..-     +...        .++. -...|.|+.+||++++|+++--|.++++|-+.+.+....+-+|.-||.||..+
T Consensus       481 Wdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS  559 (888)
T KOG0306|consen  481 WDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS  559 (888)
T ss_pred             EeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEecc
Confidence            99631     1111        1122 23569999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc----
Q 023018          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ----  276 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----  276 (288)
                      |++..++||+.|..|+||-+.=|.+-+.+..   |...|.++.|.|....+++++.|+.|+.||-...+.+.++.+    
T Consensus       560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE  636 (888)
T ss_pred             CCcCeEEeccCCCceEEeccccchhhhhhhc---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence            9999999999999999999998988888877   889999999999999999999999999999999999988844    


Q ss_pred             eEEEEEeec
Q 023018          277 YTCVAYDLD  285 (288)
Q Consensus       277 ~~~~~~~~d  285 (288)
                      +.|++.+|+
T Consensus       637 v~cLav~~~  645 (888)
T KOG0306|consen  637 VWCLAVSPN  645 (888)
T ss_pred             eeeeEEcCC
Confidence            455555554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.4e-26  Score=174.78  Aligned_cols=217  Identities=18%  Similarity=0.313  Sum_probs=173.6

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ....|..+.|+| ....|++++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus        12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence            356799999998 44555567799999999999887666676 999999999986 457899999999999999988754


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      . +..|..++.++.+.+....+++|+.|++|++||.+.......+.. ...|.++...  ++.|++|+.+..+.+||+++
T Consensus        89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             e-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            4 456889999999999888999999999999999998666665553 3478887664  78899999999999999986


Q ss_pred             Ccee---------------E---------------------------------EEcCCC------ccccCeEEEEEcCCC
Q 023018          223 GENI---------------H---------------------------------VIRGHP------YHTEGLTCLTISADS  248 (288)
Q Consensus       223 ~~~~---------------~---------------------------------~~~~~~------~~~~~v~~~~~~~~~  248 (288)
                      ....               .                                 .+..|.      ....+|++++|+|-.
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            4211               1                                 111110      012478999999988


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018          249 TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      ..|++|+.||.|.+||+.+.|.++.+    ..+..++|+.+-
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence            89999999999999999999988877    236677777664

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-27  Score=175.64  Aligned_cols=227  Identities=22%  Similarity=0.331  Sum_probs=184.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (288)
                      .+-..|.+.|..+...- .+..|||++.|++|+|+..+..   +++.++.+|.+||..++|..  .|.+||+++.||.|.
T Consensus         5 ~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             ehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            45567999999888876 7889999999999999999864   56788999999999999965  788999999999999


Q ss_pred             EEeCCCCce--eEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCC---
Q 023018          133 IWDPSSGNL--KCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPD---  202 (288)
Q Consensus       133 i~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~---  202 (288)
                      ||.-.+++-  ......|.+.+++++|.|.  |-.|++++.||.|.|++.+..   ...+....|.-.+++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999887743  3445678999999999994  568999999999999988764   233455679999999999995   


Q ss_pred             C-----------CEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 023018          203 G-----------KTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVNI  265 (288)
Q Consensus       203 ~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~  265 (288)
                      |           +.|++|+.|..|+||+..+++  .-.++.+   |...|+.++|.|.-    ..|++++.||++.||..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence            4           569999999999999988763  2233444   88999999999942    57999999999999987


Q ss_pred             CCC---cEEEEecceEEEEEeecccC
Q 023018          266 TTG---KVCCLNFQYTCVAYDLDFVL  288 (288)
Q Consensus       266 ~t~---~~~~~~~~~~~~~~~~df~~  288 (288)
                      ..-   .....+..+.+++|...|+|
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSL  266 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEec
Confidence            631   12233466777788777765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=9.6e-26  Score=172.19  Aligned_cols=208  Identities=22%  Similarity=0.356  Sum_probs=174.3

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ..++.++.+.||...|..|+.+| .+..+++++.|++|++||++..++...+.....+  .++|.|.|-++|++.....|
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeE
Confidence            34688899999999999999999 6688899999999999999987777777644444  47899999999999888899


Q ss_pred             EEEeCCCC--ceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCe---EEEEEcCCC
Q 023018          132 QIWDPSSG--NLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV---TCGDFTPDG  203 (288)
Q Consensus       132 ~i~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i---~~~~~~p~~  203 (288)
                      ++||++..  .+...+.   ......+.+.|+|+|+.|+.++..+.+++.|.-+|..+.++..+...-   ...+|+|++
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence            99999864  3334443   335678999999999999999999999999999999888887655432   567899999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +++++|+.||+|.+|+++++..+..+.+.  +..++.++.|.|.-.++++++  ..+.+|=..
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGKKVAVLRGP--NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCcEeeEecCC--CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            99999999999999999999999999875  678899999999876666654  568888554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.5e-26  Score=201.48  Aligned_cols=224  Identities=28%  Similarity=0.383  Sum_probs=189.7

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccC------------CeeeEeeccccCcEEEEEEecCCCEEEEEeC
Q 023018           62 GHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      .+...|.++..+| ++..+|||+  .||.++||+...            .+.+.....|.+.|+|+.|+|+|++||+|+.
T Consensus        11 H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             cCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            3456799999999 889999999  899999999753            2345667789999999999999999999999


Q ss_pred             CCeEEEEeCCC------------------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec
Q 023018          128 DGLVQIWDPSS------------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG  189 (288)
Q Consensus       128 dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  189 (288)
                      |+.|.||....                  .+....+.+|.+.|..++|+|++.++++++.|++|.+|+.++.+.+.++.+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            99999998762                  135667889999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeC----CCcEEE
Q 023018          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSK----DGSVHM  262 (288)
Q Consensus       190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----dg~i~i  262 (288)
                      |.+.|-.+.|.|-|+||++-+.|++|+||++.+....+.+..+-.   ....+..+.|+|||.+|++...    -..+.|
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence            999999999999999999999999999999877666666654321   3345788999999999998643    346888


Q ss_pred             EEcCCCcEEEEe----cceEEEEEeecc
Q 023018          263 VNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       263 wd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      .+-.+-+.-..+    .+.+++.|+|.+
T Consensus       250 ieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  250 IERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EecCCceeeeeeecCCCceEEEEeChHH
Confidence            877666655555    678889998865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-28  Score=202.25  Aligned_cols=216  Identities=20%  Similarity=0.325  Sum_probs=180.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  130 (288)
                      ..++.+..|..|...|+++.|++....+|++|+.||+|++||++..+...++.+....|.+++|+|. +.+|+++...|.
T Consensus       121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~  200 (839)
T KOG0269|consen  121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY  200 (839)
T ss_pred             ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence            4567788999999999999999999999999999999999999999888899888999999999984 568999999999


Q ss_pred             EEEEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCCCCE-E
Q 023018          131 VQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKT-I  206 (288)
Q Consensus       131 i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~-l  206 (288)
                      +.+||++.. +....+..|.+++.++.|+|++.+||+|+.|+.|+||++.+++  .+.++. ...++.+++|-|...+ |
T Consensus       201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hL  279 (839)
T KOG0269|consen  201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHL  279 (839)
T ss_pred             EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchh
Confidence            999999876 4556678899999999999999999999999999999998654  334443 4578999999996655 6


Q ss_pred             EEEe--CCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          207 CTGS--DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       207 ~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      ++++  .|-.|+|||++..-. ..++..   |...++.++|.. +...|.+++.||.|..-.++++...
T Consensus       280 Atcsmv~dtsV~VWDvrRPYIP~~t~~e---H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  280 ATCSMVVDTSVHVWDVRRPYIPYATFLE---HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             hhhhccccceEEEEeeccccccceeeec---cCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence            6665  377899999985433 344444   788899999976 5567889999999887766665433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=194.97  Aligned_cols=210  Identities=25%  Similarity=0.435  Sum_probs=189.3

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEE-ecCCCEEEEEeCCCeEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAF-SMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~  132 (288)
                      .+..+..|++-|..++... +++.|++++.|-+|++|+....  -+..++..|...|.|+++ .++..++|+|+-|+.|.
T Consensus        65 ~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence            4778889999999999887 7778889999999999999876  567778899999999999 67788999999999999


Q ss_pred             EEeCCCC--ceeEE--------ec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          133 IWDPSSG--NLKCT--------LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       133 i~d~~~~--~~~~~--------~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      +||+.++  +.+..        +. ++..+|++++.++.|..|++|+..+.+++||.++.+.+..+++|...|+++..++
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND  223 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence            9999977  22222        22 6777899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +|..+++++.||+|++||+....++.++..   |...|+++..+|+-..+++|+.||.|+.=|+++..
T Consensus       224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  224 DGTRLLSASSDGTIRLWDLGQQRCLATYIV---HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             CCCeEeecCCCceEEeeeccccceeeeEEe---ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            999999999999999999998888888877   77889999999999999999999999999999843

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2e-25  Score=163.33  Aligned_cols=206  Identities=24%  Similarity=0.393  Sum_probs=175.1

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----eEeeccccCcEEEEEEecC----CCEEEEEe-
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMD----GQLLASGG-  126 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~-  126 (288)
                      .+.-+.|.+.|+|.+|+| .+.++|+|+.|.+|++..+.....     -..+.-|.+.|..++|-.+    +..|++++ 
T Consensus        82 ~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence            344567899999999999 889999999999999987764322     2346668999999999642    44666664 


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-------cCCCeEEEEE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-------HGSSVTCGDF  199 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~  199 (288)
                      .|..|++-|..+++..+.+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++..       ..+.|.+++.
T Consensus       161 gdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  161 GDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            57788888999999999999999988876 333688999999999999999998888877642       2367899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       200 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .|.|++|++|-.|....+||++.+..++.+..   |...|+++.|+|...+|++++.|..|++-|++.
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~p---hsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHP---HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCC---CccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99999999999999999999999999888876   888999999999999999999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4.8e-26  Score=181.52  Aligned_cols=212  Identities=27%  Similarity=0.435  Sum_probs=186.8

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee----Ee-------------e-ccccCcEEEEEEecC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE-------------I-QGHKDSVSSLAFSMD  118 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~-------------~-~~~~~~i~~~~~~~~  118 (288)
                      ...+..|.-+|++++++| +..++++++.+|+|.-|++.+++..    .+             - ..|...+.+++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            678889999999999999 7788899999999999999876532    11             1 267888999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (288)
                      ++|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|...|..|.
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999998


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      -...++.+-+|+.|+++++|++..- ....+.+   +...+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg---~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRG---GEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccccceeEEEecccc-ceeeeeC---CCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888888888889999999999543 3334444   6778999998864 56789999999999999999999887

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=8.4e-26  Score=188.30  Aligned_cols=204  Identities=23%  Similarity=0.390  Sum_probs=178.5

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ......|..+|+||+..|.|++... ++. +++|+.|.++++|...  ++...+.+|...|++++.-|.+ .+++|+.|.
T Consensus        87 ~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK  161 (745)
T KOG0301|consen   87 KLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADK  161 (745)
T ss_pred             ecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence            4466789999999999999999776 454 7899999999999874  5566799999999999999988 789999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +|++|.-  ++.+.+|.+|...|+.+++-+++ .|++++.||.|++|++ ++..+..+.+|...+++++..++++.++++
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            9999964  78899999999999999999754 6889999999999999 788999999999999999988888999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      +.|++++||+..  .+.+.+..   ....|+++.+-++|.+ ++|++||.||||.....
T Consensus       238 gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  238 GEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             cCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCCE-EEeccCceEEEEEeccc
Confidence            999999999876  66677764   3457899998888875 67889999999998743

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.7e-25  Score=190.52  Aligned_cols=218  Identities=20%  Similarity=0.312  Sum_probs=188.0

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +...|.+++...   ..|++|+.+++|.+|.+..++.-..+....-++.+++|+.+|+++|.|+.|-.|++.++.+....
T Consensus        55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE  131 (933)
T ss_pred             cCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence            778899998754   48899999999999999998877677777889999999999999999999999999999999999


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--------cCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------HGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ..+++|.++|.++.|+|++++||+.+.||.|++|++.++.+..++.+        ....+..++|+|++..|++.+.|+.
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            99999999999999999999999999999999999998876665542        1456788999999888888889999


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEee
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDL  284 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~  284 (288)
                      |.+|+..++.....+.... +...+..+.|+|.|.+|++++.+|.|.|||+.+-..-.....+.+.+|-|
T Consensus       212 Vkvy~r~~we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKP  280 (933)
T ss_pred             EEEEccCCceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCC
Confidence            9999999998888877543 34449999999999999999999999999999754433335566666654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4e-25  Score=169.14  Aligned_cols=228  Identities=18%  Similarity=0.285  Sum_probs=175.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe------------------------------------
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------------------------------------   98 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------------------------------   98 (288)
                      -.+..|++|.+.|++++|+. ++..||+++.|+.|++|+++...                                    
T Consensus        77 l~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            34567899999999999999 89999999999999999985421                                    


Q ss_pred             eeEee-----------------------ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEE
Q 023018           99 WASEI-----------------------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV  155 (288)
Q Consensus        99 ~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  155 (288)
                      .+..+                       ..|...+..+-....+.+|++++.|..|.+|++. |+.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            01111                       1233444455555567799999999999999998 88888888777778888


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECC---cc-----cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C
Q 023018          156 SWHPRGHIVLAGSEDSTVWMWNAD---RA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS----G  223 (288)
Q Consensus       156 ~~~~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~----~  223 (288)
                      +.+|+|+++++++....|++|.+-   .|     ..+..+++|.+.|..++|+|+...+++.+.||+++|||+.-    +
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            999999999999999999999862   22     34567789999999999999999999999999999999752    2


Q ss_pred             ceeEEEcCC----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          224 ENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       224 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      +-.+.+...    .........+.++|.|+.|+.+ ....+++|..++|+..-.+     ..+.+++|+++
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSD  384 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence            222222111    0112333489999999998765 4568999999999877665     56788888874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.5e-25  Score=174.68  Aligned_cols=212  Identities=22%  Similarity=0.437  Sum_probs=169.1

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE---eeccccCcEEEEEEecCCC-EEEEE
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDGQ-LLASG  125 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~-~l~~~  125 (288)
                      .....+|+.++.+|...=++|+|+|.....|++|.--+.|++|...++....   .+.+|...|-.++|+|..+ .|++|
T Consensus       197 ~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  197 KDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             cccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence            3467889999999999999999999666668888888999999998876543   3567999999999999654 89999


Q ss_pred             eCCCeEEEEeCCCCce--eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---ccEEEEeeccCCCeEEEEEc
Q 023018          126 GLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~  200 (288)
                      +.||+|+|||++.+..  ....+.|.+-|+.|.|+....+||+|+.||+++|||+|+   ++++..|+.|..+|+++.|+
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence            9999999999998832  223477999999999999888999999999999999986   46889999999999999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCCc----------------eeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 023018          201 P-DGKTICTGSDDATLRVWNPKSGE----------------NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHM  262 (288)
Q Consensus       201 p-~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i  262 (288)
                      | +...|++++.|.+|.+||+..-.                +.+.+..|. ....+.-+.|++. ..+|++.+.|| +.|
T Consensus       357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnV  434 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNV  434 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeE
Confidence            9 45668888999999999985311                111222221 2345677889984 45677777777 444


Q ss_pred             E
Q 023018          263 V  263 (288)
Q Consensus       263 w  263 (288)
                      |
T Consensus       435 f  435 (440)
T KOG0302|consen  435 F  435 (440)
T ss_pred             E
Confidence            4

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.7e-26  Score=181.41  Aligned_cols=212  Identities=20%  Similarity=0.338  Sum_probs=172.7

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  139 (288)
                      .+|+++|..++|+..-..+||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            47999999999999788999999999999999999999999999999999999999964 58999999999999999853


Q ss_pred             ceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 023018          140 NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLR  216 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~  216 (288)
                      ......-...+.|-.++|.|. ...+++++.||+++-+|+|+. +++.++++|..+|.++++++. ...|++++.++.|+
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            322222224567999999994 457888889999999999986 899999999999999999984 55689999999999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      +|++...... ....+...-+...|.++.|+- -+|+.|+..+.++|||+.+...+..
T Consensus       400 lw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  400 LWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            9998754332 222222233446677777754 5677888888999999998776544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=170.07  Aligned_cols=221  Identities=14%  Similarity=0.242  Sum_probs=175.5

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      -|....+++....  ..|+.|++ .+.+||+|..+|.|.|||+.+......+.+|..+|++++|+++|++|++++.|..|
T Consensus        13 ~PEel~~tld~~~--a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   13 YPEELTHTLDNPL--AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             ChHhhceeccCCc--cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            3444555555333  78999999 88999999999999999999999888999999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCC----------------------------------------------CCEEEEEEcCCCCEEE
Q 023018          132 QIWDPSSGNLKCTLEGPG----------------------------------------------GGVEWVSWHPRGHIVL  165 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~----------------------------------------------~~i~~~~~~~~~~~l~  165 (288)
                      .+||+..|.+++.++-..                                              ....+..|.+.|++++
T Consensus        90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi  169 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII  169 (405)
T ss_pred             EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence            999999887766543110                                              0112234667788999


Q ss_pred             EecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------e---EEEcCCCcc
Q 023018          166 AGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------I---HVIRGHPYH  235 (288)
Q Consensus       166 ~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~------~---~~~~~~~~~  235 (288)
                      +|+..|.+.+++..+.+++..++... ..|..+.++..|++|+.-+.|..||.|+++.--.      +   +.+... ..
T Consensus       170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VN  248 (405)
T KOG1273|consen  170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VN  248 (405)
T ss_pred             EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hh
Confidence            99999999999999999998887655 7899999999999999999999999999862110      0   111100 02


Q ss_pred             ccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEecc
Q 023018          236 TEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~~~~~~~  276 (288)
                      ..+-.+++|+.+|.++++++. ...++||.-..|.+++.+.+
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence            234567899999999988764 45799999999999998833

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=2.9e-25  Score=185.15  Aligned_cols=219  Identities=25%  Similarity=0.415  Sum_probs=187.7

Q ss_pred             CCeeEeecCCCCEEE-EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           55 DSTHIFSGHSDEVYS-VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+.+.+|.+-|.+ +++-+.++-.+++|+.|+++.+|.+....+...+.+|...|.+++...++. +++|+.|.++++
T Consensus        48 l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Takv  126 (745)
T KOG0301|consen   48 LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKV  126 (745)
T ss_pred             ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEE
Confidence            344667778887777 888775556788999999999999999999999999999999999887776 999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      |..  +++...+.+|...|++++.-|.+ .+++|+.|.+|++|.-  ++.+++|.+|...|+.+++.|+ ..+++++.||
T Consensus       127 W~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg  200 (745)
T KOG0301|consen  127 WRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDG  200 (745)
T ss_pred             ecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCc
Confidence            965  45566689999999999999977 9999999999999974  7889999999999999999976 4578899999


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF  286 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df  286 (288)
                      .|+.|++ +|..+..+.+   |...+.++....++..++++++|++++||+..  .+.+.+.-+....|+..+
T Consensus       201 ~Ir~w~~-~ge~l~~~~g---htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  201 SIRLWDL-DGEVLLEMHG---HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             eEEEEec-cCceeeeeec---cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence            9999999 6788888877   78889999988888899999999999999977  667766555555565544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=179.30  Aligned_cols=212  Identities=17%  Similarity=0.197  Sum_probs=171.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCC-CEEEEEeCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLD  128 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  128 (288)
                      ......+-|.++|++++|+|... .++|+|..-|.|-+||+.+.    .-+..+..|.++|.++.|+|.. ..+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            34456677899999999999766 89999999999999999532    3455677899999999999954 488999999


Q ss_pred             CeEEEEeCCCCceeEE--eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-EEEeeccCCCeEEEEEcC-CCC
Q 023018          129 GLVQIWDPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGK  204 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~p-~~~  204 (288)
                      |+|++-|+..+.....  +......+..+.|+.+...++++..=|...+||++++.. ...+..|...|+.++++| ...
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999999987754333  333556788889988888888887778999999998754 666777889999999999 556


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          205 TICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +|++++.|++.+|||++....... +-..-.|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            789999999999999986543321 11122288999999999977669999999999999983

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2.1e-26  Score=181.30  Aligned_cols=231  Identities=22%  Similarity=0.334  Sum_probs=202.9

Q ss_pred             CCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEe
Q 023018           49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        49 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ....|......+..|.+.|..+.|-+ +...|++|+.|..|++|+....+  .+.++.+..++|+++.|.++++++++++
T Consensus       160 ~~~lpS~~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas  238 (459)
T KOG0288|consen  160 EDTLPSRALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS  238 (459)
T ss_pred             hcccchhhhhhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence            45577778888999999999999999 77789999999999999998765  6777888889999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      .|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++||+....+.+++. ..+.+..|..+  ...+
T Consensus       239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~  315 (459)
T KOG0288|consen  239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDV  315 (459)
T ss_pred             CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceee
Confidence            99999999999999999999999999999999876679999999999999999988777765 34556666665  5568


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--------cceE
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--------FQYT  278 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--------~~~~  278 (288)
                      ++|..|+.|++||.++..+...+..    .+.|+++..++++..|++++.|.++.+.|+++......+        ...+
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt  391 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT  391 (459)
T ss_pred             eecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence            8999999999999999999888874    458999999999999999999999999999999888776        3456


Q ss_pred             EEEEeeccc
Q 023018          279 CVAYDLDFV  287 (288)
Q Consensus       279 ~~~~~~df~  287 (288)
                      .++|||+-.
T Consensus       392 rvvfSpd~~  400 (459)
T KOG0288|consen  392 RVVFSPDGS  400 (459)
T ss_pred             eeEECCCCc
Confidence            788888743

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=4.3e-24  Score=161.90  Aligned_cols=226  Identities=27%  Similarity=0.389  Sum_probs=174.9

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC---CCEEEEEeCCCeEEEEe
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWD  135 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d  135 (288)
                      .-.+|.-.|..+.|-|.+..++.+++.|.++++||..+.+....|+ ..+.|++-+++|-   .-++|+|..+-.|++.|
T Consensus        96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            4457888999999999988899999999999999999998888887 6788999999984   34788999999999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcc-cEEEE--------------eeccCCCeEEEEE
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNM--------------FSGHGSSVTCGDF  199 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~--------------~~~~~~~i~~~~~  199 (288)
                      +.+|...+.+.+|...|.++.|+|... .|++|+.||.|++||++.. .+...              -..|.+.+..++|
T Consensus       175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~  254 (397)
T KOG4283|consen  175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW  254 (397)
T ss_pred             ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence            999999999999999999999999766 6788999999999999864 22222              2357788999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--
Q 023018          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--  274 (288)
Q Consensus       200 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--  274 (288)
                      +.++.++++++.|..+++|+..+|.....-.+...+..   .-..+. +-+...++.--.++.+.++++-.|..+..+  
T Consensus       255 tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~  333 (397)
T KOG4283|consen  255 TSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST  333 (397)
T ss_pred             cccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence            99999999999999999999988754222111111111   111122 223334444445577888888888777766  


Q ss_pred             --cceEEEEEeecc
Q 023018          275 --FQYTCVAYDLDF  286 (288)
Q Consensus       275 --~~~~~~~~~~df  286 (288)
                        ..+.|.+|.|+|
T Consensus       334 h~k~i~c~~~~~~f  347 (397)
T KOG4283|consen  334 HLKRINCAAYRPDF  347 (397)
T ss_pred             ccceeeEEeecCch
Confidence              556777777776

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.93  E-value=2.1e-24  Score=169.40  Aligned_cols=217  Identities=22%  Similarity=0.383  Sum_probs=176.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCCC-EEEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQ-LLASG  125 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  125 (288)
                      ......+.||+++|..++|+|.+...+|+|+.|.+|.||.+..+       +++..+.+|...|.-++|+|... .|+++
T Consensus        71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            34456788999999999999999999999999999999999764       45677889999999999999654 78899


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEEEEcCCCC
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGK  204 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~p~~~  204 (288)
                      +.|.+|.+|++.+++.+..+. |...|.+++|+.+|.+|++++.|..|+|||.++++.+..-.+|.+ ....+.|..++.
T Consensus       151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence            999999999999999888888 999999999999999999999999999999999999988877765 345666888888


Q ss_pred             EEEEEe---CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcEEE
Q 023018          205 TICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       205 ~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .+-+|-   .+.++-+||..+.+....+.... ....|.---|.++..+++ +|-.|+.|+.|.+..-.+..
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~  300 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFV  300 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCcee
Confidence            555543   46789999987654433222221 345566667788877766 45569999999998876443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=3.3e-25  Score=178.90  Aligned_cols=219  Identities=20%  Similarity=0.358  Sum_probs=181.3

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .|..-|.++..+. ..+.++||+. |.|+|||+...   .++..+..  ...-|.++.+.|+|+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            4777888888887 6788999987 88999999753   23333332  3567889999999999999999999999999


Q ss_pred             CCCceeE--EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          137 SSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       137 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      .......  .+....-.+.+++.+|+.+..++++.||.|.|||+++...++.|++|...+.||.++++|..|.+|+-|.+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            8765433  33333345788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeeccc
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV  287 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df~  287 (288)
                      ||-||++++..+....    ....|.++.++|.+.+|++|-..+.+.+..... .....+..+.++++|..|.
T Consensus       575 vRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa  642 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFA  642 (705)
T ss_pred             eeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEec
Confidence            9999999987665544    567899999999999999999999999988654 4444556667777776664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=173.16  Aligned_cols=200  Identities=22%  Similarity=0.364  Sum_probs=161.4

Q ss_pred             EEEEEcCC------CCcEEEEEeCCCeEEEEEccCCe---ee------------------EeeccccCcEEEEEEecCCC
Q 023018           68 YSVACSPT------DATLVATGGGDDKGFFWRINQGD---WA------------------SEIQGHKDSVSSLAFSMDGQ  120 (288)
Q Consensus        68 ~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~~---~~------------------~~~~~~~~~i~~~~~~~~~~  120 (288)
                      .|++|...      .++++|.|+.+..|.|||+.-..   +.                  ....+|...|.+++|+..-+
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            56666542      35799999999999999985210   00                  11235888888999987544


Q ss_pred             -EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018          121 -LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       121 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (288)
                       .||+|+.|.+|++||+.++++...+..|...|.++.|+| ....|++|+.|++|.+.|+|........-...+.|-.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence             899999999999999999999999999999999999999 566999999999999999996433322222567899999


Q ss_pred             EcCC-CCEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          199 FTPD-GKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       199 ~~p~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      |.|. ...+++++.||.|+-+|+|+. +++.++..   |..+|.++++++ ...+|++++.|+.|++|++..-..
T Consensus       337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---ccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            9994 456788889999999999975 77888877   888999999998 457889999999999999975433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=167.56  Aligned_cols=218  Identities=17%  Similarity=0.231  Sum_probs=180.9

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  140 (288)
                      .+.|+++.|+| ...++.+++.||+++||.+..  ...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            46899999999 788999999999999999875  345666666678999999999999 89999999999999999887


Q ss_pred             eeEE--eccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          141 LKCT--LEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       141 ~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      ....  ..++ ...+.....++++++|+..+..|.|.+....++..+..++ ..+.|..++|+.+++.|++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            5443  2222 2357778889999999999999999999999999998887 5678999999999999999999999999


Q ss_pred             EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CcEEEEe----cceEEEEEeec
Q 023018          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t------~~~~~~~----~~~~~~~~~~d  285 (288)
                      ||++...+++.+...  ..-.-++++.++++.+|++|+..|.|.|||..+      .++++.+    ..++.+.|++|
T Consensus       371 ~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d  446 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD  446 (514)
T ss_pred             EecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence            999999888888642  122346678889999999999999999999654      3555554    56777777765

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=5.8e-23  Score=174.71  Aligned_cols=233  Identities=21%  Similarity=0.264  Sum_probs=192.5

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~  130 (288)
                      ..++.++.++++.+.|+++.=+| --..+|.|..+|+|.+++++.++.+.+++...+.|++++|..||. .+++|+..|.
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~  268 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD  268 (910)
T ss_pred             ccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence            45688899999999999999999 677999999999999999999999999984459999999999998 5667777799


Q ss_pred             EEEEeCCCCceeEEec-----------------------------------------------cC---------------
Q 023018          131 VQIWDPSSGNLKCTLE-----------------------------------------------GP---------------  148 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~-----------------------------------------------~~---------------  148 (288)
                      +.+||+...+.+..+.                                               +|               
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            9999986533222110                                               00               


Q ss_pred             --------------------------------------------------------------------------------
Q 023018          149 --------------------------------------------------------------------------------  148 (288)
Q Consensus       149 --------------------------------------------------------------------------------  148 (288)
                                                                                                      
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence                                                                                            


Q ss_pred             -------------------CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEE
Q 023018          149 -------------------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       149 -------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l  206 (288)
                                         ...+++++.++.|++.+.|+..|.|-+|++++|-....+   ..|+.+|+.++...-++.+
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence                               134677888888888999999999999999998877777   4799999999999888999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEE--------------------------------------cCCCccccCeEEEEEcCCC
Q 023018          207 CTGSDDATLRVWNPKSGENIHVI--------------------------------------RGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~~~~~  248 (288)
                      ++++.+|.+.+||..+...+..+                                      +...+|...|+.++|||||
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg  588 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG  588 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence            99999999999998765432211                                      1112388899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          249 TLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      ++|++++.|++|++||+.|+.++-.+   .+...+.|+|.
T Consensus       589 rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  589 RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence            99999999999999999999998776   66777777764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.9e-22  Score=164.52  Aligned_cols=221  Identities=14%  Similarity=0.084  Sum_probs=164.1

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-eEEEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIW  134 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~  134 (288)
                      ....+..+.. +..++|+|.+..++++++.++.|++||+.+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+|
T Consensus        65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        65 VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            3344444443 567899994444555566789999999998887777753 34468899999999999888765 56788


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEECCcccEEEEeeccC-------CCeEEEEEcCCCCEE
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDFTPDGKTI  206 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~p~~~~l  206 (288)
                      |..+++....+... ..+.+++|+|++++++++ ..++.|++||+++++.+..+..+.       .....++|+|+++++
T Consensus       143 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~  221 (300)
T TIGR03866       143 DTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA  221 (300)
T ss_pred             eCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence            99887766554433 346789999999988655 468999999999988776654221       123568899999986


Q ss_pred             EEE-eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe---cceEEEE
Q 023018          207 CTG-SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN---FQYTCVA  281 (288)
Q Consensus       207 ~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~---~~~~~~~  281 (288)
                      +++ +.++.|.+||+.+++....+.    +...+.+++|+|++.+|+++ +.+|.|++||+.+++++..+   ....+++
T Consensus       222 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  297 (300)
T TIGR03866       222 FVALGPANRVAVVDAKTYEVLDYLL----VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVV  297 (300)
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEE----eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeE
Confidence            554 456789999999887766554    34568899999999998876 46899999999999998877   4445555


Q ss_pred             Ee
Q 023018          282 YD  283 (288)
Q Consensus       282 ~~  283 (288)
                      ++
T Consensus       298 ~~  299 (300)
T TIGR03866       298 VR  299 (300)
T ss_pred             eC
Confidence            54

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.1e-24  Score=173.97  Aligned_cols=215  Identities=15%  Similarity=0.272  Sum_probs=179.4

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .-.|++... -..++++|+..+.|+|||++...+.+.+.+|...|+++.++....|||+++..|.|.|..+.++.....|
T Consensus        81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             hHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            445565555 3468899999999999999977777888999999999999999999999999999999999999887777


Q ss_pred             ccC-CCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEe-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 023018          146 EGP-GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       146 ~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~  221 (288)
                      ... ...++.+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..|...|+|+| +..+|++.+.|..|.+||++
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            755 34567999999766 5667889999999999887766554 46999999999999 55667899999999999999


Q ss_pred             CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEe----cceEEEEEeec
Q 023018          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~-~~~~~----~~~~~~~~~~d  285 (288)
                      .......+.    ...+...++|.++|.+|++|...|.|..||++..+ +++++    ..+++++|.+.
T Consensus       240 s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  240 SQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            777666665    56789999999999999999999999999998654 45554    45777777654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.8e-23  Score=156.99  Aligned_cols=207  Identities=21%  Similarity=0.323  Sum_probs=161.2

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (288)
                      +-.+|.+-|+++.|.+ .|+.+|+|+.|++|+|||..+    ..+....+.|.+.|..+.|.+  -|+.+|+++.|+++.
T Consensus         8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            4468999999999999 889999999999999999754    345566778999999999965  588999999999999


Q ss_pred             EEeCCC---------CceeEEeccCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcc------cEEEEee-------
Q 023018          133 IWDPSS---------GNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRA------AYLNMFS-------  188 (288)
Q Consensus       133 i~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------  188 (288)
                      ||.-..         -....++....+.|+.+.|.|  -|-.+|+++.||.++||+....      .+...++       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997521         123445666778899999999  5679999999999999986543      2223333       


Q ss_pred             ccCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCC----CCEEEEEe
Q 023018          189 GHGSSVTCGDFTP---DGKTICTGSDD-----ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISAD----STLALSGS  255 (288)
Q Consensus       189 ~~~~~i~~~~~~p---~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~  255 (288)
                      .+..+..|+.|+|   ...+|++|+.+     +.+.||....+ .....+.....+..+|+.++|.|+    -.+|++++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~  246 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT  246 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence            3567788999998   45678888865     37888875433 244444444458999999999994    35789999


Q ss_pred             CCCcEEEEEcCC
Q 023018          256 KDGSVHMVNITT  267 (288)
Q Consensus       256 ~dg~i~iwd~~t  267 (288)
                      .|| |+||.+..
T Consensus       247 kDg-v~I~~v~~  257 (361)
T KOG2445|consen  247 KDG-VRIFKVKV  257 (361)
T ss_pred             cCc-EEEEEEee
Confidence            999 99999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.8e-25  Score=170.74  Aligned_cols=217  Identities=23%  Similarity=0.340  Sum_probs=173.3

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---------------------------------
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---------------------------------   96 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------------------------------   96 (288)
                      +-....+...+..|.+.|..|++..   ..+++++.|.+|+.|.+..                                 
T Consensus        95 nlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~I  171 (433)
T KOG0268|consen   95 NLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDI  171 (433)
T ss_pred             ehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeee
Confidence            3345677889999999999999975   4567888889898888432                                 


Q ss_pred             -----CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC
Q 023018           97 -----GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED  170 (288)
Q Consensus        97 -----~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  170 (288)
                           ..++..+..-...|.++.|+|-.. .|++|+.|+.|.+||++++.+++.+.. ...-+.|+|+|.+-.+++|+.|
T Consensus       172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccc
Confidence                 112233333345678888888544 677888999999999999988877653 3346789999988899999999


Q ss_pred             CeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC
Q 023018          171 STVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (288)
Q Consensus       171 g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (288)
                      ..++.||++.. .++..+++|.+.|..+.|+|.|+-+++|+.|.+|+||..+.+........  .....|.++.|+.|.+
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK  328 (433)
T ss_pred             ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc
Confidence            99999999975 67888999999999999999999999999999999999987654333221  1345799999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEE
Q 023018          250 LALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       250 ~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      ++++|+.|+.|++|...-.+.+.
T Consensus       329 yi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEEecCCCcceeeeecchhhhcC
Confidence            99999999999999976555443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=7.5e-24  Score=180.04  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=180.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      ...+++++.++ .+++.+.|+..|.|-+|++++|-....+   +.|..+|+.++...-++.+++++.+|.+++||.....
T Consensus       448 ~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  448 DINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             CcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            36799999999 8889999999999999999999988888   4799999999998888899999999999999999888


Q ss_pred             eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      .+..++. ...+.++.++.....++++..|-.|+++|+.+.+.++.+.+|...|+.++|||+|++|++++.|++|++||+
T Consensus       527 l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  527 LKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            7777764 346889999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCC
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMVNITT  267 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~t  267 (288)
                      .++..+..+.    ...++.++.|+|+|.+|++...| .-|++|.-.+
T Consensus       606 pt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  606 PTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            9999988887    56789999999999999999888 6799997543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=4.4e-24  Score=179.05  Aligned_cols=225  Identities=17%  Similarity=0.310  Sum_probs=191.4

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec---CCCEEEEEeCCCeEEEEeCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~  137 (288)
                      -+..-.+.+++.+| ++++||+|..-|.|+||++...+....+..|...|.|+.|+.   ..++||+++.|..|+|||+.
T Consensus       456 ~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             cCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            34456799999999 899999999999999999999999899999999999999984   34589999999999999986


Q ss_pred             CC-ceeEEeccCCCCEEEEEEcCCC--CEEEEecCCCeEEEEECCcccEEEEee-----ccCCCeEEEEEcCCCCEEEEE
Q 023018          138 SG-NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       138 ~~-~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      .. .++.++.+|.+.|+++.|..+|  ..+++++.|..|.+--.+.......+.     ..+..++.|+..|..++++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence            54 6777889999999999999877  689999998887764333211111121     234578999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEEEeecc
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF  286 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~df  286 (288)
                      +.|..|+||++.+|+..+.|++...+.+....+...|.|.+|++.+.|.++.++|+.+|++++..++|..++....|
T Consensus       615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence            99999999999999999999998888888999999999999999999999999999999999999776655555544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-22  Score=167.36  Aligned_cols=222  Identities=22%  Similarity=0.352  Sum_probs=177.2

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .+.--..+|+++||+. ..+.||.+-.+|.|.||++...-. ...+.+ ....|.+++|++. ..|++.+.+|.|.-||+
T Consensus        20 f~d~~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDL   97 (691)
T ss_pred             EEeeeccceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEec
Confidence            3344467899999999 667799999999999999987533 233444 3568999999954 46788888999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE--EEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      .++++...+....+.|++++.+|.+..++.|+.||.++.++...++..  ..+...++.+.+++|+|++..|+.|+.||.
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~  177 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV  177 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence            999999999999999999999999999999999998888888776543  334456789999999999999999999999


Q ss_pred             EEEEeCCCCceeEEEcC----C-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018          215 LRVWNPKSGENIHVIRG----H-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD  283 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~  283 (288)
                      |++||..+++.+.....    . .....-|+++.+-.+ ..|++|.+-|.|.+||...|.++...    ..+.+++-+
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~  254 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA  254 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence            99999999887762221    1 112334677777755 46789999999999999999988766    344444443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.6e-21  Score=159.00  Aligned_cols=228  Identities=17%  Similarity=0.154  Sum_probs=168.6

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  132 (288)
                      .+....+.+|.. +.+++|+|++..++++++.++.|++|+..+++....+..+.. +..++|+|+++.++++ +.++.|+
T Consensus        21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~   98 (300)
T TIGR03866        21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT   98 (300)
T ss_pred             CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence            345666666544 678999994444556778889999999999888777765443 4678999999977655 5689999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-e
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-S  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~  210 (288)
                      +||+.+.+.+..+..+ ..+.+++|+|++.+++++..++ .+.+||.++++....+. ....+..++|+|++++|+++ .
T Consensus        99 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866        99 VIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC
Confidence            9999988877766533 3468899999999999988765 56788998877665543 23456789999999988655 4


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCC--cc--ccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018          211 DDATLRVWNPKSGENIHVIRGHP--YH--TEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKVCCLN---FQYTCVAY  282 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~--~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~  282 (288)
                      .++.|++||+.+++.+..+....  .+  ......++|+|+++++++ .+.++.|.+||+.+++.+..+   ..+.+++|
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  256 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF  256 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence            68999999999987766554211  01  112356889999988655 455678999999999887654   44667777


Q ss_pred             eec
Q 023018          283 DLD  285 (288)
Q Consensus       283 ~~d  285 (288)
                      +|+
T Consensus       257 ~~~  259 (300)
T TIGR03866       257 TPD  259 (300)
T ss_pred             CCC
Confidence            765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-22  Score=174.22  Aligned_cols=222  Identities=18%  Similarity=0.245  Sum_probs=189.4

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      -+|...-+.++|.| ++..|++++.||.|++|+.... ..-..+..+...|.+++.  .+.+|++|+.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence            36888899999999 7779999999999999998765 333444447777877776  4558999999999999999988


Q ss_pred             ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      ..-..+....-++++++++.+|+++|.|+.|-.|++.++........+++|..+|.++.|+|.+.+||+.+.||.|++||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            76666666667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEEcCCCcc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEEeec
Q 023018          220 PKSGENIHVIRGHPYH-----TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~~~d  285 (288)
                      +.++....++.+....     ...+..++|+|++..|++.+.|+.|++|+..+......+      ..+..+.|+|.
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            9998877766554322     345678899999888888889999999999999888877      34778888875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.5e-24  Score=172.35  Aligned_cols=205  Identities=19%  Similarity=0.277  Sum_probs=177.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      ..-|.++.+.| +++.|++|+.-.+|.|||+....+  ...+....-.+++++.+||.+..++++.||.|.|||+.+...
T Consensus       465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL  543 (705)
T ss_pred             ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence            34688899999 788888999999999999986543  333444445678899999999999999999999999999999


Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~  221 (288)
                      ++.|++|...+.||..+++|..|.+|+-|.+|+.||++.++.+.... ..+.|.++.++|.+.+|++|-.++.+-|....
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence            99999999999999999999999999999999999999998776654 56889999999999999999999999988875


Q ss_pred             CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..+ ...+..   |..-|.++.|.+-|+++++.+.|..+..|.+.-|..+...
T Consensus       623 kp~-kyqlhl---heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  623 KPE-KYQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             Ccc-ceeecc---cccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence            443 334443   7889999999999999999999999999999888766654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-23  Score=165.99  Aligned_cols=190  Identities=22%  Similarity=0.385  Sum_probs=164.6

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---------CeeeEeeccccCcEEEEEEecCC--C
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMDG--Q  120 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~~--~  120 (288)
                      ..+..+..+.+|=.+|+|+.|+- ++.+|++|+.||.|.+|.+..         -++.+.+..|.-+|+++...+.+  .
T Consensus       111 ssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~  189 (476)
T KOG0646|consen  111 SSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA  189 (476)
T ss_pred             ccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence            44667777888999999999998 889999999999999999743         45778888999999999987653  4


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----------------cEE
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----------------AYL  184 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~  184 (288)
                      +|++++.|.++++||+..+.++..+..+ ..+.+++.+|-++.+++|+.+|.|.+.++.+.                ..+
T Consensus       190 rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~  268 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI  268 (476)
T ss_pred             eEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee
Confidence            8999999999999999999998887755 46999999999999999999999999886432                245


Q ss_pred             EEeeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          185 NMFSGHGS--SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       185 ~~~~~~~~--~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                      ..+.+|..  +|+|++++-||..|++|+.||.++|||+.+.++++++..   ..++|+.+.+.|
T Consensus       269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~---~kgpVtnL~i~~  329 (476)
T KOG0646|consen  269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT---SKGPVTNLQINP  329 (476)
T ss_pred             eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh---hccccceeEeec
Confidence            66778887  999999999999999999999999999999999888875   467888888866

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.5e-22  Score=153.94  Aligned_cols=192  Identities=22%  Similarity=0.340  Sum_probs=154.1

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC--EEEEEeCCCeEEEEe
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQIWD  135 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d  135 (288)
                      +....|.++|.+++|+. ++..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+...  .|++|+.|.+|+.||
T Consensus        66 ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence            44566899999999998 77899999999999999999995 456666999999999987554  899999999999999


Q ss_pred             CCCCceeEEeccC-----------------------------------------CCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018          136 PSSGNLKCTLEGP-----------------------------------------GGGVEWVSWHPRGHIVLAGSEDSTVW  174 (288)
Q Consensus       136 ~~~~~~~~~~~~~-----------------------------------------~~~i~~~~~~~~~~~l~~~~~dg~i~  174 (288)
                      .+...++.++.-+                                         .-.++|++..++....+.|+-.|.+.
T Consensus       144 ~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  144 TRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             cCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence            9876655543211                                         12467888888777778888889888


Q ss_pred             EEECCcc--cEEEEeeccC---------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018          175 MWNADRA--AYLNMFSGHG---------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (288)
Q Consensus       175 i~d~~~~--~~~~~~~~~~---------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (288)
                      +..+..+  +.-..|+.|.         ..|.+|+|+|.-..|++++.||++.+||-.....+.....   +..+|++++
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~---~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET---HPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc---CCCccceeE
Confidence            8887765  3333444443         2578899999889999999999999999876666655554   889999999


Q ss_pred             EcCCCCEEEEE
Q 023018          244 ISADSTLALSG  254 (288)
Q Consensus       244 ~~~~~~~l~~~  254 (288)
                      |+.+|.+++-+
T Consensus       301 fn~~G~ifaYA  311 (347)
T KOG0647|consen  301 FNRNGSIFAYA  311 (347)
T ss_pred             ecCCCCEEEEE
Confidence            99999988754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.4e-23  Score=169.26  Aligned_cols=216  Identities=21%  Similarity=0.365  Sum_probs=180.9

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--------CeeeEeeccccCcEEEEEEecCCCEEEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      ..+..++..|.+.|+.++|+| ....|++++.||.|++|++..        .+++.++.+|.++|.|+++.+++..+++|
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             cceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            344558889999999999999 677889999999999999932        35788899999999999999999999999


Q ss_pred             eCCCeEEEEeCCCC----------ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--------
Q 023018          126 GLDGLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--------  187 (288)
Q Consensus       126 ~~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------  187 (288)
                      +.||+|+.|++...          .....+.+|...++.+++|+....|++++.||+++.|......+ .++        
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            99999999976422          23446778999999999999999999999999999998754332 000        


Q ss_pred             -------------------------------------e-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          188 -------------------------------------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       188 -------------------------------------~-------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                                                           .       .....+..+.++|...+.+++..++.|+++|..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence                                                 0       01134567788898899999999999999999999


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..+.....   |...++++++.|+|-+|++++.||.+++|.+....++...
T Consensus       522 ~~l~s~~a---~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  522 KILHSMVA---HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             ccchheee---ccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            98877766   7889999999999999999999999999999876666543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.4e-22  Score=153.62  Aligned_cols=147  Identities=23%  Similarity=0.349  Sum_probs=126.4

Q ss_pred             EEEEeCCCeEEEEEccC------------CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           80 VATGGGDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        80 l~~~~~dg~i~iw~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      +++|++...|.-+++.-            ..++..+..|.++|++++.  ++.++|+|+.|-+|+|||++..+.+..+-.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence            45666655555555431            1235567789999999998  588999999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCC--EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018          148 PGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       148 ~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      |.+.|+++.|.+.-.  +|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.++..++.+.|+.++.||+-.|+.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            999999999998654  999999999999999999999999999999999999999999999999999999999987765


Q ss_pred             eEE
Q 023018          226 IHV  228 (288)
Q Consensus       226 ~~~  228 (288)
                      -..
T Consensus       162 a~v  164 (362)
T KOG0294|consen  162 AFV  164 (362)
T ss_pred             cee
Confidence            433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.1e-22  Score=152.57  Aligned_cols=191  Identities=20%  Similarity=0.333  Sum_probs=151.2

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      +...-.|..++.+++|.+  ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++-...+++|+.|++|++||.
T Consensus        47 l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~  123 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP  123 (323)
T ss_pred             hhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEec
Confidence            344445899999999996  457889999999999999987654 45569999999999988889999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---------------------------------
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---------------------------------  183 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------------  183 (288)
                      +.......+.... .|.++..  .++.|++|+.+..+.+||+++...                                 
T Consensus       124 R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  124 RNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR  200 (323)
T ss_pred             cccccccccccCc-eEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence            8755444444333 5777666  467888888888888888875321                                 


Q ss_pred             ---------------EEEeecc---------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCe
Q 023018          184 ---------------LNMFSGH---------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL  239 (288)
Q Consensus       184 ---------------~~~~~~~---------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  239 (288)
                                     ...|+.|         -.||.+|+|+|--..|+||+.||.|.+||+.+.+.+..+..   ....|
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~---~~~SI  277 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK---YETSI  277 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC---CCCce
Confidence                           1111222         23789999999888999999999999999998888877765   45679


Q ss_pred             EEEEEcCCCCEEEEEeC
Q 023018          240 TCLTISADSTLALSGSK  256 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~  256 (288)
                      .+++|+.+|..||+++.
T Consensus       278 ~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  278 SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEEeccCCCeEEEEec
Confidence            99999999999998864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=184.72  Aligned_cols=218  Identities=22%  Similarity=0.337  Sum_probs=173.4

Q ss_pred             CCEEEEEEcCCCCc---EEEEEeCCCeEEEEEccCC------eeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEE
Q 023018           65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQG------DWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW  134 (288)
Q Consensus        65 ~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~  134 (288)
                      ..-+.|+|.+.+..   ++|.|..||.|.+|+....      ..+.++..|.++|..+.|++... +||+|+.+|.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45788999985444   6999999999999998752      24556678999999999999665 99999999999999


Q ss_pred             eCCCCceeEEec--cCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCC--CeEEEEEcCCC-CEEEE
Q 023018          135 DPSSGNLKCTLE--GPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT  208 (288)
Q Consensus       135 d~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~p~~-~~l~~  208 (288)
                      |+...+.-..+.  ...+.|.+++|+. ...+|++++.+|.+.|||+|..+++-.+..+..  .+..+.|+|+. ..|++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998765444432  2456799999987 455788899999999999999988877765544  47789999965 44666


Q ss_pred             EeCCC---eEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecc----eEE
Q 023018          209 GSDDA---TLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNFQ----YTC  279 (288)
Q Consensus       209 ~~~dg---~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----~~~  279 (288)
                      ++.|.   .|.+||+|.. .+++.+.+   |..+|.++.|++ |..+|++++.|++|.+|+..||+.+..+..    ...
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~---H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEG---HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD  301 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcc---cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence            66544   5899999854 34555555   889999999999 558999999999999999999999998844    566


Q ss_pred             EEEeec
Q 023018          280 VAYDLD  285 (288)
Q Consensus       280 ~~~~~d  285 (288)
                      +.|+|.
T Consensus       302 v~w~pr  307 (1049)
T KOG0307|consen  302 VQWCPR  307 (1049)
T ss_pred             eeecCC
Confidence            666654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.9e-22  Score=161.24  Aligned_cols=225  Identities=18%  Similarity=0.304  Sum_probs=182.2

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE--eecccc-CcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ++.+.--..||.+++|.|.+...+++++....++.||+.+.+...  ...++. ..+.....++++++|+..+..|.|++
T Consensus       250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l  329 (514)
T KOG2055|consen  250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL  329 (514)
T ss_pred             heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence            333333566899999999666589999999999999998866433  333443 35677888999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEEEEcCCCCEEEEEeCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ....++..+..++ ..+.+..++|+.+++.|++++.+|.|++||+++..+++++....+ .-++++.++++.+||+|+..
T Consensus       330 LhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  330 LHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             ehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            9999999998887 456799999999999999999999999999999999998875332 33678888999999999999


Q ss_pred             CeEEEEeCCCC------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEe-------cce
Q 023018          213 ATLRVWNPKSG------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCCLN-------FQY  277 (288)
Q Consensus       213 g~i~i~d~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~~~-------~~~  277 (288)
                      |.|.|||..+.      +++..+..   ....|+++.|+++.++|+.++.  ...+++..+.+..+..-.       ..+
T Consensus       409 GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             ceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            99999996532      33333333   5678999999999999987765  678999999987766643       668


Q ss_pred             EEEEEeec
Q 023018          278 TCVAYDLD  285 (288)
Q Consensus       278 ~~~~~~~d  285 (288)
                      +|++|||.
T Consensus       486 tc~aFSP~  493 (514)
T KOG2055|consen  486 TCMAFSPN  493 (514)
T ss_pred             EEEEecCC
Confidence            99999984

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.3e-22  Score=150.00  Aligned_cols=214  Identities=17%  Similarity=0.284  Sum_probs=165.3

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEEccC---------CeeeEeeccccCcEEEEEEecC--C
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSP-TDATLVATGGGDDKGFFWRINQ---------GDWASEIQGHKDSVSSLAFSMD--G  119 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~--~  119 (288)
                      ..-......+.|.+.|..+.|.+ .-|+.+|+++.|+++.||.-..         .....++......|++++|.|.  |
T Consensus        47 ~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG  126 (361)
T KOG2445|consen   47 GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG  126 (361)
T ss_pred             CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc
Confidence            33456678889999999999975 4688999999999999998521         1234456667789999999995  5


Q ss_pred             CEEEEEeCCCeEEEEeCCCCc------eeEEec-------cCCCCEEEEEEcC---CCCEEEEecCC-----CeEEEEEC
Q 023018          120 QLLASGGLDGLVQIWDPSSGN------LKCTLE-------GPGGGVEWVSWHP---RGHIVLAGSED-----STVWMWNA  178 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~------~~~~~~-------~~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~  178 (288)
                      -.+|+++.||.++||+.....      +...+.       .+..+..|+.|+|   ...+||+|+.+     +.++||..
T Consensus       127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence            589999999999999865432      222232       3556789999998   35588888876     47888865


Q ss_pred             Ccc----cEEEEeeccCCCeEEEEEcCC----CCEEEEEeCCCeEEEEeCCCC-----------------ceeEEEcCCC
Q 023018          179 DRA----AYLNMFSGHGSSVTCGDFTPD----GKTICTGSDDATLRVWNPKSG-----------------ENIHVIRGHP  233 (288)
Q Consensus       179 ~~~----~~~~~~~~~~~~i~~~~~~p~----~~~l~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~  233 (288)
                      ..+    ..+..+.+|..+|+.++|.|.    -..|++++.|| |+||.++..                 -.+..+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            432    355667789999999999994    24589999999 999998731                 1234444455


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .|...|..+.|.-.|..|.+.+.||.|++|...
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            589999999999999999999999999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.3e-23  Score=184.19  Aligned_cols=216  Identities=19%  Similarity=0.384  Sum_probs=179.1

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCC-CEEEEEeC
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDG-QLLASGGL  127 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~  127 (288)
                      ......+..+..|+++|..+.|++..+++||+|+.+|.|.|||+.+.+.-..+.  .....|.+++|+..- ..|++++.
T Consensus       103 ~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~  182 (1049)
T KOG0307|consen  103 NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSP  182 (1049)
T ss_pred             CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCC
Confidence            344556778889999999999999888899999999999999998755444432  245789999998754 47889999


Q ss_pred             CCeEEEEeCCCCceeEEeccCCC--CEEEEEEcCCCC-EEEEecCC---CeEEEEECCcc-cEEEEeeccCCCeEEEEEc
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHPRGH-IVLAGSED---STVWMWNADRA-AYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~  200 (288)
                      +|.+.|||++..+.+..+..+.+  .+..++|||+.. .+++++.|   -.|.+||+|.. .+++.+++|...|.++.|+
T Consensus       183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             CCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence            99999999999887777765443  478999999654 66666654   36999999874 5778889999999999999


Q ss_pred             CCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc
Q 023018          201 PDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       201 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +.+ .+|++++.|+.|.+|+..+++.+..+..   ....+..+.|+|. ...+++++-||.|.||.+.++.
T Consensus       263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCchhhhcccCCCCeeEecCCCceEeeecCC---CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            955 8899999999999999999999988876   6778999999994 4588888999999999998765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-21  Score=161.20  Aligned_cols=208  Identities=20%  Similarity=0.316  Sum_probs=175.3

Q ss_pred             eeEeecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        57 ~~~~~~h-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ...+.++ .+.|-+++|++ ++ .|++.+.+|.|.-||+.++++...+....+.|++++.+|.+..+++||.||.+..++
T Consensus        61 ~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   61 EPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             eEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            3445555 46899999996 55 556888899999999999999999999999999999999999999999999888888


Q ss_pred             CCCCceeE--EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--------ccCCCeEEEEEcCCCCE
Q 023018          136 PSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--------GHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       136 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~p~~~~  205 (288)
                      ...++...  .+....+.+.+++|+|++..+++|+.||.|++||..++..+....        ....-|+++.|..+ ..
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~t  217 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-ST  217 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-Cc
Confidence            77776543  345567899999999999999999999999999999987666221        12334677777744 67


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      |++|...|.|.+||...+.++..+..   |...|.+++..+++.++++++.|+.|..|...+++.
T Consensus       218 I~sgDS~G~V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEEecCCceEEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            99999999999999999988877776   788899999999999999999999999999887744

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.2e-22  Score=165.69  Aligned_cols=212  Identities=20%  Similarity=0.346  Sum_probs=166.4

Q ss_pred             CCCCCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec---------
Q 023018           47 AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---------  117 (288)
Q Consensus        47 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---------  117 (288)
                      ..-.+.|..+...++||++.|.+|+..| .+..||+|+.||+|+||.+.++.++.++. ..+.|.|++|+|         
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEE
Confidence            3445667788889999999999999999 89999999999999999999998777664 334455555555         


Q ss_pred             -----------------------------------------------------------------------CCCEEEEEe
Q 023018          118 -----------------------------------------------------------------------DGQLLASGG  126 (288)
Q Consensus       118 -----------------------------------------------------------------------~~~~l~~~~  126 (288)
                                                                                             .|.||++.+
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence                                                                                   444444432


Q ss_pred             CC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          127 LD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       127 ~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      .+   ..|.|+++...+.+.-|+...+.+.++.|+|...+|++++. ..|++||+.....++.+......|..++.+|.|
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            21   23444444443333334445677999999999999999887 889999998887777777777889999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          204 KTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      ..|+.|+.|+.+..||+.-+ ++.+++..   |...+++++|++.-.++++|+.||.+.|+.
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~---H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRL---HEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhh---hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99999999999999998754 34455554   889999999999999999999999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=2.7e-22  Score=166.22  Aligned_cols=228  Identities=17%  Similarity=0.239  Sum_probs=166.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--eccccCcEEEEEEecCCC-EEEEEeCCCeE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQ-LLASGGLDGLV  131 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i  131 (288)
                      ........|..+|..+.|.| +...|++++.|.++++||+.+.+++..  +.+|...|.+++|.|... .|++|+.||.|
T Consensus        91 ~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen   91 RQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI  169 (720)
T ss_pred             hhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcE
Confidence            33566778999999999999 889999999999999999999888777  889999999999999655 78999999999


Q ss_pred             EEEeCCCCce---------------------------eEEeccCCCCEEE---EEEcCCCCEEEEecC-CCeEEEEECCc
Q 023018          132 QIWDPSSGNL---------------------------KCTLEGPGGGVEW---VSWHPRGHIVLAGSE-DSTVWMWNADR  180 (288)
Q Consensus       132 ~i~d~~~~~~---------------------------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~  180 (288)
                      .|||++-...                           +.....+...|.+   +.+..+...||+++. |+.|+|||++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            9999864320                           0011122333444   445557778888887 99999999987


Q ss_pred             ccEEE--------Eeecc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCC
Q 023018          181 AAYLN--------MFSGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       181 ~~~~~--------~~~~~---~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                      .....        .+..|   ...+.++.....|.+|++.+.|+.|++|++.+..  ++..+.+.. .......-..+|+
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~-~~sf~vks~lSpd  328 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL-NSSFYVKSELSPD  328 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-cceeeeeeecCCC
Confidence            54322        12223   3457788888889999998899999999998643  223333221 1112223356899


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEee
Q 023018          248 STLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDL  284 (288)
Q Consensus       248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~  284 (288)
                      +.+|++|+.|...++|.+.+.+.--.+     ..+.++.|.|
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence            999999999999999999986544332     3444555443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=5.7e-21  Score=154.58  Aligned_cols=209  Identities=22%  Similarity=0.354  Sum_probs=166.4

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--  142 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--  142 (288)
                      .-|.|++|.+ ++. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|..|..||-. -+.+  
T Consensus       247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~  322 (626)
T KOG2106|consen  247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRE  322 (626)
T ss_pred             eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecccc-cccccc
Confidence            5699999999 654 459999999999999988888777799999999999999864 559999999999821 1100  


Q ss_pred             ---------------------------------------EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE
Q 023018          143 ---------------------------------------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY  183 (288)
Q Consensus       143 ---------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  183 (288)
                                                             ....+|......++.+|..+.+++++.|+++++|+  ..++
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence                                                   01134566788899999999999999999999999  4555


Q ss_pred             EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       184 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      ..+.. ...+..|+.|+|.| .++.|+..|...+.|..+...+..-.    ...+++++.|+|+|.+|+.|+.|+.|++|
T Consensus       401 ~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  401 EWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT----DNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             eEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe----cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            55443 46788999999999 99999999999999998854443332    47889999999999999999999999999


Q ss_pred             EcCCCcEEEEe------cceEEEEEeec
Q 023018          264 NITTGKVCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       264 d~~t~~~~~~~------~~~~~~~~~~d  285 (288)
                      .+..+......      ..+..+.||+|
T Consensus       475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~D  502 (626)
T KOG2106|consen  475 RVSANGRKYSRVGKCSGSPITHLDWSSD  502 (626)
T ss_pred             EECCCCcEEEEeeeecCceeEEeeecCC
Confidence            99765433332      44555555554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=4.2e-22  Score=159.15  Aligned_cols=223  Identities=18%  Similarity=0.202  Sum_probs=175.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCC
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ....-+..+..|+.+|.++.|+|.+...+++.+.||+|++-|+.+...-..+.  .....+..+.|+.+...++.+..=|
T Consensus       222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G  301 (498)
T KOG4328|consen  222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG  301 (498)
T ss_pred             CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence            33456778899999999999999989999999999999999998765433333  2455677888888777788888778


Q ss_pred             eEEEEeCCCCce-eEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCC
Q 023018          130 LVQIWDPSSGNL-KCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       130 ~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~  203 (288)
                      ...+||+++++. ...+.-|...|.+++++|. ..+||+++.|++++|||+|+...    +.....|...|.+..|||.+
T Consensus       302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            999999998765 5556667789999999994 45899999999999999987432    23334599999999999988


Q ss_pred             CEEEEEeCCCeEEEEeCC----CCceeEEEcCCCccccC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          204 KTICTGSDDATLRVWNPK----SGENIHVIRGHPYHTEG--LTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..|++.+.|..|+|||..    .-.+...+.....+...  .....|.|+..++++|..-..|-|+|-..++.++.+
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el  458 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL  458 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence            789999999999999983    33444444422112222  234589999999999999999999999999977775

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=4.6e-23  Score=158.35  Aligned_cols=214  Identities=21%  Similarity=0.378  Sum_probs=166.4

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeCC
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      .+.+....+.+|..+|..+.++|...+++++++.|..|++|++++..++..+.   +|...|.++.|++++.+|++++.|
T Consensus       123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence            45677778899999999999999989999999999999999999999988875   699999999999999999999999


Q ss_pred             CeEEEEeCCCCceeE----------------------------EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc
Q 023018          129 GLVQIWDPSSGNLKC----------------------------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR  180 (288)
Q Consensus       129 g~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  180 (288)
                      .+|++|++...+...                            +-.-|...|-|+.|-  |+++++-+.++.|..|....
T Consensus       203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgk  280 (385)
T KOG1034|consen  203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGK  280 (385)
T ss_pred             ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecch
Confidence            999999987432110                            001244455566664  67899989999999998721


Q ss_pred             -c-------------cEEEEeeccCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCCcee-EEEcCCCccccCeEEEE
Q 023018          181 -A-------------AYLNMFSGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLT  243 (288)
Q Consensus       181 -~-------------~~~~~~~~~~~~i~~~~--~~p~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~  243 (288)
                       .             ..+..+......|+-+.  |.|-++.|+.|...|.|++||++...+. .+...+......|+..+
T Consensus       281 l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~s  360 (385)
T KOG1034|consen  281 LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTS  360 (385)
T ss_pred             hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeee
Confidence             1             12333444445555554  5567788999999999999999876652 11112223567799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          244 ISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      |+.++.+|+..+.|++|.-||-.+
T Consensus       361 fS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  361 FSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             ecccCcEEEEEeCCCcEEEEEeec
Confidence            999999999999999999999643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=4e-22  Score=167.41  Aligned_cols=209  Identities=20%  Similarity=0.303  Sum_probs=178.2

Q ss_pred             CeeEeecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCC--CEEEEEeCCCe
Q 023018           56 STHIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDG--QLLASGGLDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~  130 (288)
                      ....+..|...|.|+.|+..  ..++||+++.|..|.|||+.. -.++.++.+|...|+++.|.-+|  ..+++++.|..
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence            34456689999999999862  457999999999999999875 45678899999999999998877  57889999988


Q ss_pred             EEEEeCCCCceeEEecc-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec---cCCCeEEEEEcCC
Q 023018          131 VQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPD  202 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~p~  202 (288)
                      |.+--.+.......+..     ....++.++..|..+++++++.|..|+||++.+++..+.|++   |.+....+...|.
T Consensus       573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS  652 (1080)
T KOG1408|consen  573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS  652 (1080)
T ss_pred             hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC
Confidence            77544332222222222     234689999999999999999999999999999999999975   6677888999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      |-||++.+.|.++.++|..+|+++..+.+   |...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       653 giY~atScsdktl~~~Df~sgEcvA~m~G---HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  653 GIYLATSCSDKTLCFVDFVSGECVAQMTG---HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccEEEEeecCCceEEEEeccchhhhhhcC---cchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999999999999999998888   889999999999999999999999999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=1.2e-21  Score=150.41  Aligned_cols=220  Identities=22%  Similarity=0.386  Sum_probs=168.5

Q ss_pred             CCCEEEEEEcC------CCCcEEEEEeCCCeEEEEEccCCeeeEeecc--ccC---cEEEEEEecCCCEEEEEeCCCeEE
Q 023018           64 SDEVYSVACSP------TDATLVATGGGDDKGFFWRINQGDWASEIQG--HKD---SVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        64 ~~~v~~~~~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ...|...+|-+      .+..++|+.+.+.-|++||..+++....+..  |..   ...+++|+|+|.+|++|- ..+|+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence            35688888863      1567999999999999999999998877753  332   346899999999998875 57899


Q ss_pred             EEeC-CCCceeEE---e----ccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          133 IWDP-SSGNLKCT---L----EGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       133 i~d~-~~~~~~~~---~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      ++|+ +.|+....   +    .+..+-|.+++|+| +...+++|+...++-||.-..+.++..+.+|.+.|+.+.|.++|
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG  262 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG  262 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence            9999 44432221   1    12356799999999 55699999999999999888889999999999999999999999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEe----cc
Q 023018          204 KTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVCCLN----FQ  276 (288)
Q Consensus       204 ~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t-~~~~~~~----~~  276 (288)
                      +.|++|.. +-.|..||++.. .++..+..+......-.-....|++++|++|+.+|.|++||+++ |..+..+    ..
T Consensus       263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~  342 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT  342 (406)
T ss_pred             CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence            99999885 678999999854 44555555432222233345678999999999999999999998 7655544    23


Q ss_pred             eEEEEEee
Q 023018          277 YTCVAYDL  284 (288)
Q Consensus       277 ~~~~~~~~  284 (288)
                      +.++++.|
T Consensus       343 vNgvslnP  350 (406)
T KOG2919|consen  343 VNGVSLNP  350 (406)
T ss_pred             ccceecCc
Confidence            44444444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=8e-21  Score=158.89  Aligned_cols=226  Identities=22%  Similarity=0.310  Sum_probs=177.3

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------------------------------------
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------------------------------------   98 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------------------------------------   98 (288)
                      .+.||.+-|+++.|+| .+..|.+++.|.++.+|...+..                                        
T Consensus       262 ll~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            4569999999999999 66777899999999999875421                                        


Q ss_pred             ------------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC----------------------------
Q 023018           99 ------------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS----------------------------  138 (288)
Q Consensus        99 ------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------------------  138 (288)
                                  ....+.+|...|.+++|+|.|.+|++.+.|.+-+++-.-.                            
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence                        1112357889999999999999999999998887763210                            


Q ss_pred             -------CceeEEe------------------------------------------------------------------
Q 023018          139 -------GNLKCTL------------------------------------------------------------------  145 (288)
Q Consensus       139 -------~~~~~~~------------------------------------------------------------------  145 (288)
                             .+.++.|                                                                  
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence                   0001111                                                                  


Q ss_pred             ---------------------ccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEEEeeccCCCeEEEEE
Q 023018          146 ---------------------EGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNMFSGHGSSVTCGDF  199 (288)
Q Consensus       146 ---------------------~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~  199 (288)
                                           .+|.-.|++++.+|+++++|+++..     ..|++|+..+...++.+..|.-.|+.|+|
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F  580 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF  580 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence                                 3445678999999999999999875     35999999999888999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEe--
Q 023018          200 TPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVCCLN--  274 (288)
Q Consensus       200 ~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~--~~~~~~--  274 (288)
                      ||++++|++.+.|.++.+|....... -..+.....|..-|..+.|+|++.++++++.|..|++|.....  +.+...  
T Consensus       581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~  660 (764)
T KOG1063|consen  581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC  660 (764)
T ss_pred             CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence            99999999999999999998754322 1223334458899999999999999999999999999999888  444331  


Q ss_pred             ----cceEEEEEeec
Q 023018          275 ----FQYTCVAYDLD  285 (288)
Q Consensus       275 ----~~~~~~~~~~d  285 (288)
                          ..++.+++.+-
T Consensus       661 ~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  661 LKFSLAVTAVAYLPV  675 (764)
T ss_pred             hccCCceeeEEeecc
Confidence                55666666553

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4e-21  Score=147.37  Aligned_cols=206  Identities=20%  Similarity=0.361  Sum_probs=165.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .-...-+.|+-.|..+-... ++.++++++.|..|.+|++. ++.+..+......-+..+.+|+|+++++++..-.|++|
T Consensus       178 D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw  255 (420)
T KOG2096|consen  178 DNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW  255 (420)
T ss_pred             cccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence            33345566777888877776 88999999999999999998 88888887766677888999999999999999999999


Q ss_pred             eCC---CC-----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-------ccEEEEee----ccCCCeE
Q 023018          135 DPS---SG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-------AAYLNMFS----GHGSSVT  195 (288)
Q Consensus       135 d~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~----~~~~~i~  195 (288)
                      .+-   .|     +....+++|.+.|..++|+++...+++.+.||++++||+.-       .+.++...    ...+...
T Consensus       256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~  335 (420)
T KOG2096|consen  256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV  335 (420)
T ss_pred             EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence            863   22     23456789999999999999999999999999999999742       22222221    2233445


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .+.++|.|+.|+.+. ...|.+|..++|+....+...  |...|.+++|+++|+++++++ |..++++.-.
T Consensus       336 RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt  402 (420)
T KOG2096|consen  336 RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRNT  402 (420)
T ss_pred             EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence            899999999998765 567999999998877666544  889999999999999999875 7788887633

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=147.28  Aligned_cols=154  Identities=22%  Similarity=0.330  Sum_probs=133.9

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec
Q 023018          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG  189 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  189 (288)
                      ..|+.|++.|.+||+|+.+|.|.|||+.+...-..+.+|..+|++++|+++|++|++++.|..|.+||+..|.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6899999999999999999999999999999888899999999999999999999999999999999999888766653 


Q ss_pred             cCCCeEE-----------------------------------------------EEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          190 HGSSVTC-----------------------------------------------GDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       190 ~~~~i~~-----------------------------------------------~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ..++|+.                                               ..|.+.|+++++|...|.+.+||..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            2222222                                               23556678999999999999999999


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .+++..++..  ....|..+.++..|+.|+..+.|..|+.|+++
T Consensus       185 ~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  185 LECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             heeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            9888877753  23678999999999999999999999999987

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=5.9e-21  Score=159.64  Aligned_cols=212  Identities=24%  Similarity=0.326  Sum_probs=170.4

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      -..++++-||.-.|++++.+| +++++|++....     .|++|+..+...+..+.+|.-.|+.++|+|++++|++.++|
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             chhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence            356788899999999999999 889999987643     49999999988888999999999999999999999999999


Q ss_pred             CeEEEEeCCCCce----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEE--eeccCCCeEEEEEc
Q 023018          129 GLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNM--FSGHGSSVTCGDFT  200 (288)
Q Consensus       129 g~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~--~~~~~~~i~~~~~~  200 (288)
                      .++.+|.......    ....+.|..-|....|+|++.+|+|++.|.+|++|.....  +.+..  ...+..+|+.++|.
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence            9999998754321    2235678888999999999999999999999999998776  43333  23478899999998


Q ss_pred             C-C----CCEEEEEeCCCeEEEEeCCC-------C--ceeEEEcCCCccccCeEEEEEcCC----------CCEEEEEeC
Q 023018          201 P-D----GKTICTGSDDATLRVWNPKS-------G--ENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSK  256 (288)
Q Consensus       201 p-~----~~~l~~~~~dg~i~i~d~~~-------~--~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~  256 (288)
                      | +    +..+++|-..|.|.+|....       +  .....+.....+...|+.+.|.|-          ...|++|+.
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~  753 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD  753 (764)
T ss_pred             ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence            8 2    23678899999999998541       1  111222333346778999999974          235689999


Q ss_pred             CCcEEEEEcC
Q 023018          257 DGSVHMVNIT  266 (288)
Q Consensus       257 dg~i~iwd~~  266 (288)
                      |..++++++.
T Consensus       754 D~~vri~nv~  763 (764)
T KOG1063|consen  754 DESVRIFNVD  763 (764)
T ss_pred             cceeEEeecc
Confidence            9999999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=7.1e-21  Score=142.38  Aligned_cols=208  Identities=21%  Similarity=0.311  Sum_probs=160.1

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      .|+.|...+++|.+.|+++.|.. ++ +|.+|..-|.|++|.+.+.+.+..+. .+...|+.+.--|+ ..+.+-+.|+.
T Consensus         2 ~pPdP~fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~   78 (323)
T KOG0322|consen    2 VPPDPFFVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL   78 (323)
T ss_pred             CCCCCeeEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence            46788899999999999999987 44 47789999999999999988888887 57788999888887 46788889999


Q ss_pred             EEEEeCCCCceeEE--e---------------------------------------------------ccCCCCEEEEEE
Q 023018          131 VQIWDPSSGNLKCT--L---------------------------------------------------EGPGGGVEWVSW  157 (288)
Q Consensus       131 i~i~d~~~~~~~~~--~---------------------------------------------------~~~~~~i~~~~~  157 (288)
                      +.+|++.-+..+..  +                                                   ....+.+.+..+
T Consensus        79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            99998765221110  0                                                   001234555554


Q ss_pred             cC-CCC--EEEEecCCCeEEEEECCcccEEEE----------eecc----------------------------------
Q 023018          158 HP-RGH--IVLAGSEDSTVWMWNADRAAYLNM----------FSGH----------------------------------  190 (288)
Q Consensus       158 ~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~----------------------------------  190 (288)
                      .- .+.  ++++|..+|.+.+||+.++..+..          ...|                                  
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            32 222  567788899999999987522111          1112                                  


Q ss_pred             ------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018          191 ------------GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       191 ------------~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                                  ...+..+.+-||++.+++++.|+.||||.-++.+++..+.-   |...|++++|+|+..++++++.|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---Hsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---HSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---hhcceeEEEeCCCCchhhhccCCc
Confidence                        22345566778889999999999999999999998888776   789999999999999999999999


Q ss_pred             cEEEEEc
Q 023018          259 SVHMVNI  265 (288)
Q Consensus       259 ~i~iwd~  265 (288)
                      +|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=8.3e-21  Score=143.77  Aligned_cols=205  Identities=23%  Similarity=0.417  Sum_probs=160.3

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCC-------CeEEEEEccCC---------eeeEeec-cccCcEEEEEEecCC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMDG  119 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~~~~~i~~~~~~~~~  119 (288)
                      ...|..|.+.|+.++-+|.+..+|+++..+       -...||.+...         +.+..+. .+-+.|.|+.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            356677889999999999999999988652       23679998652         2333343 355689999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCce-eEEec-----cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEee-cc
Q 023018          120 QLLASGGLDGLVQIWDPSSGNL-KCTLE-----GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GH  190 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~  190 (288)
                      ..+++-. +..|.+|++..+.. ...+.     .+....++-+|+|  +++.+++.+ ++++..||+|+.+....+. +|
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH  213 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH  213 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence            9988876 78999999987765 33332     2344678889999  677777654 5999999999987766654 68


Q ss_pred             CCCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 023018          191 GSSVTCGDFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       191 ~~~i~~~~~~p~~~~-l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ...++.+.|+|+.++ |++|+.||.|+|||.+.- .++..+.+   |...|+++.|.| ..++|++|+.|..|.+|-..
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---CceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            888999999997654 789999999999999854 34555554   889999999999 45788899999999999764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=156.65  Aligned_cols=198  Identities=17%  Similarity=0.306  Sum_probs=152.1

Q ss_pred             EEEcC--CCCcEEEEEeCCCeEEEEEccCCee------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           70 VACSP--TDATLVATGGGDDKGFFWRINQGDW------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        70 ~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      ..|++  ....+||.+..+|.|.++|......      +.....|...|.++.|.|....|++++.|.++++||+.+.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            55554  3567899999999999999876433      244567999999999999666899999999999999999887


Q ss_pred             eEE--eccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc--------------------E-------EEEeeccC
Q 023018          142 KCT--LEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA--------------------Y-------LNMFSGHG  191 (288)
Q Consensus       142 ~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~--------------------~-------~~~~~~~~  191 (288)
                      ...  +.+|.+.+.+++|+| +...|++|+.||.|.|||++-..                    +       +.....+.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            766  889999999999999 55689999999999999986322                    0       11112333


Q ss_pred             CCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEEc-----CCCcc---ccCeEEEEEcCCCCEEEEEeCCCc
Q 023018          192 SSVTC---GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGS  259 (288)
Q Consensus       192 ~~i~~---~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~  259 (288)
                      ..|.+   +.+..|...|++++. |+.|+|||++.........     ....+   ...+.++.....|.+|++.|.|+.
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s  294 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS  294 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence            44444   445567888998887 9999999998754432221     11112   456788888888999999999999


Q ss_pred             EEEEEcCC
Q 023018          260 VHMVNITT  267 (288)
Q Consensus       260 i~iwd~~t  267 (288)
                      |++|++.+
T Consensus       295 Iy~ynm~s  302 (720)
T KOG0321|consen  295 IYFYNMRS  302 (720)
T ss_pred             EEEEeccc
Confidence            99999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=4.3e-21  Score=147.61  Aligned_cols=223  Identities=18%  Similarity=0.274  Sum_probs=168.6

Q ss_pred             CCCCEEEEEEcCC---CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 023018           63 HSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        63 h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~  138 (288)
                      |......++|+-+   +..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|.. +++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            5566777888652   34578888899999999999999999999999999999999975 5889999999999999999


Q ss_pred             CceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE-------------------------E---Ee
Q 023018          139 GNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-------------------------N---MF  187 (288)
Q Consensus       139 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~---~~  187 (288)
                      ..++..|.   +|...|.++.|++++.+|++++.|.++++|++...+..                         .   +.
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99988875   58889999999999999999999999999998732110                         0   11


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcee----------EEEcCCCccccCeEEE--EEcCCCCEEEEE
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENI----------HVIRGHPYHTEGLTCL--TISADSTLALSG  254 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~~  254 (288)
                      ..|...|-|+.|-  |+++++=+-++.|..|.. +-.+.+          ..+.........++-+  +|.|-+++|+.|
T Consensus       248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            2355566666664  678999888999999987 211111          1111122233445555  455677899999


Q ss_pred             eCCCcEEEEEcCCCcEEE--Ee------cceEEEEEeeccc
Q 023018          255 SKDGSVHMVNITTGKVCC--LN------FQYTCVAYDLDFV  287 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~--~~------~~~~~~~~~~df~  287 (288)
                      ...|.|++||++...+..  ++      ..++..+|+-|-+
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence            999999999998876521  11      5567777776643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=4.8e-19  Score=143.56  Aligned_cols=217  Identities=19%  Similarity=0.373  Sum_probs=175.3

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe---ecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      .+..+..|....|+|.+.+++++++. |.+.+|.++.+...++   +.. .+..|.|++|.++|+ +++|..+|.|.||+
T Consensus       196 vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS  273 (626)
T ss_pred             ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence            34456778999999999999999887 8999999988765554   322 236799999999986 68999999999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----------E---------------------
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------Y---------------------  183 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~---------------------  183 (288)
                      ..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-.+           .                     
T Consensus       274 ~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  274 KGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             CCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            988887777779999999999999886554 9999999999831000           0                     


Q ss_pred             --------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          184 --------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       184 --------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                              .....+|....+.++.+|+...+++++.|+.+++|+  ..++.....    ...++.++.|+|.| .|+.|.
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt  425 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGT  425 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEee
Confidence                    011235777888999999999999999999999999  344444443    45788999999999 999999


Q ss_pred             CCCcEEEEEcCCCcEEEEe---cceEEEEEeecc
Q 023018          256 KDGSVHMVNITTGKVCCLN---FQYTCVAYDLDF  286 (288)
Q Consensus       256 ~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~df  286 (288)
                      ..|...+.|..+...+...   .+++++.|+|+-
T Consensus       426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G  459 (626)
T KOG2106|consen  426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG  459 (626)
T ss_pred             ccceEEEEecccceeEEEEecCCceEEEEEcCCC
Confidence            9999999999997666654   678899999873

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.87  E-value=1.6e-20  Score=148.05  Aligned_cols=217  Identities=26%  Similarity=0.401  Sum_probs=163.0

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc--------C--------CeeeEeeccccCcEEEEEE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q--------GDWASEIQGHKDSVSSLAF  115 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~~~~~i~~~~~  115 (288)
                      ..-.....|..|..+|+++.|+| ++.+||+|+.+|.|.+|...        +        ......+.+|...|..++|
T Consensus        53 ~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W  131 (434)
T KOG1009|consen   53 MKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW  131 (434)
T ss_pred             eeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc
Confidence            34556778899999999999999 88999999999999999876        2        2234556789999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe--------
Q 023018          116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF--------  187 (288)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------  187 (288)
                      +|++.++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.+...        
T Consensus       132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            999999999999999999999999999999999999999999999999999888886666655432211111        


Q ss_pred             -------------ec--cCCCeEEEEEcCCCCEEEEEe------------------------------------------
Q 023018          188 -------------SG--HGSSVTCGDFTPDGKTICTGS------------------------------------------  210 (288)
Q Consensus       188 -------------~~--~~~~i~~~~~~p~~~~l~~~~------------------------------------------  210 (288)
                                   ..  ...-.+.++|+|+|..|++..                                          
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence                         00  011233445555554444321                                          


Q ss_pred             ---------------------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          211 ---------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       211 ---------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                                                 ....|+|||..+..++..+...  |-.+++.++|+++|..|+..+.||...+.
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni--hy~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI--HYSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee--eeeeecceeecCCCcEEEEeccCCceEEE
Confidence                                       1223555555444444444333  66789999999999999999999999988


Q ss_pred             EcCCCcEE
Q 023018          264 NITTGKVC  271 (288)
Q Consensus       264 d~~t~~~~  271 (288)
                      .+...++-
T Consensus       370 tfe~~elg  377 (434)
T KOG1009|consen  370 TFEPWELG  377 (434)
T ss_pred             EEcchhcc
Confidence            88776544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.8e-20  Score=136.11  Aligned_cols=212  Identities=18%  Similarity=0.257  Sum_probs=159.9

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----------CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      .|.+-+|+| .+++|++|..+|.|.+..+.+          ...+...++|.++|+.++|.  ..+|++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            467778999 788999999999999999864          12344557899999999997  34667765 59999987


Q ss_pred             CCCCce------eEEec--c-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018          136 PSSGNL------KCTLE--G-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       136 ~~~~~~------~~~~~--~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      .+....      +....  .     .-..|+++...|..+-+++++.|+.++.||+++|+..+.+++|...+.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            653211      11111  1     1235899999998887788889999999999999999999999999999988555


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-  274 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-  274 (288)
                      ...+++|+.||++|+||.++++.+..+.....       -...|.+++  -+..+|++|+ ...+.+|.+++.++.+++ 
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEe
Confidence            66789999999999999999999888765321       112244444  4566887764 568999999999888876 


Q ss_pred             --cceEEEEEee
Q 023018          275 --FQYTCVAYDL  284 (288)
Q Consensus       275 --~~~~~~~~~~  284 (288)
                        ..+..+.|-.
T Consensus       245 ipa~v~~v~F~~  256 (325)
T KOG0649|consen  245 IPARVHLVDFVD  256 (325)
T ss_pred             cccceeEeeeec
Confidence              3344444433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.8e-20  Score=148.55  Aligned_cols=196  Identities=22%  Similarity=0.247  Sum_probs=157.1

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      .+++|++ ++..+++|+.||+++||++.+...+.....|...|.++.|+|+|++|++.+.| ..+||+..++..+.....
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899998 88899999999999999998888888888899999999999999999999999 899999999965555432


Q ss_pred             --CCCCEEEEEEcCCC---C--EEEEecCCCeEEEEECCcccE-----EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          148 --PGGGVEWVSWHPRG---H--IVLAGSEDSTVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       148 --~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                        ..-.+..+.|+.++   .  .++.....+.|+.|++...+-     .++.......|++++.+++|++++.|+.+|.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence              22346667787765   2  333334456677776643221     11122234579999999999999999999999


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .|++..+.+.++.++..  |...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus       306 ai~~~~~lq~~~~vk~a--H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEA--HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeceeeeeEeehhh--heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999988887777654  888999999999999999999999988888764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=6.7e-20  Score=138.92  Aligned_cols=211  Identities=20%  Similarity=0.340  Sum_probs=160.6

Q ss_pred             CCCeeEee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeec-----cccCcEEEEEEec--CCCEEEE
Q 023018           54 DDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQ-----GHKDSVSSLAFSM--DGQLLAS  124 (288)
Q Consensus        54 ~~~~~~~~-~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~i~~~~~~~--~~~~l~~  124 (288)
                      -..+..|. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. +..+.     .+....++-+|+|  ++..+++
T Consensus       112 lE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence            33444444 5667899999999 666666555 78999999987654 33332     2556778889998  6777777


Q ss_pred             EeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p  201 (288)
                      . .++++..||+++.+....+. .|...+..+.|+|+.. +|++|+.||.|++||+|.. .++..+.+|.-.++++.|+|
T Consensus       190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence            5 48999999999987766665 5777899999999755 7888999999999999875 57889999999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCc---------------------eeE-----EEcCCCccccCeEEEEEcC-CCCEEEE
Q 023018          202 -DGKTICTGSDDATLRVWNPKSGE---------------------NIH-----VIRGHPYHTEGLTCLTISA-DSTLALS  253 (288)
Q Consensus       202 -~~~~l~~~~~dg~i~i~d~~~~~---------------------~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~  253 (288)
                       ..+++++|+.|..|.+|...+-.                     ..+     .+.....|...|.+++|+. +.-++++
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence             55678899999999999653211                     000     1122233888999999998 5566778


Q ss_pred             EeCCCcEEEEEcCC
Q 023018          254 GSKDGSVHMVNITT  267 (288)
Q Consensus       254 ~~~dg~i~iwd~~t  267 (288)
                      -+.||++.|=.+..
T Consensus       349 LSYDGRviIs~V~r  362 (370)
T KOG1007|consen  349 LSYDGRVIISSVPR  362 (370)
T ss_pred             eccCceEEeecCCh
Confidence            89999998876653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-20  Score=152.21  Aligned_cols=215  Identities=17%  Similarity=0.234  Sum_probs=170.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +..+.|+..+...+++.+.|..+++|.-...    ..+....+.  .-.|++......|+++|+..++|+|||++...+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h  114 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH  114 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence            8999999844445556677888999975432    112222222  3345555556689999999999999999977778


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-CCCeEEEEEcCCCCE-EEEEeCCCeEEEEeC
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKT-ICTGSDDATLRVWNP  220 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~p~~~~-l~~~~~dg~i~i~d~  220 (288)
                      +.++.|.+.|+++.++....+||+++..|.|.|..+.++.....|... ...++-+.|+|..++ |.+++.+|.|.+||+
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            888999999999999999999999999999999999998777777644 345678999997665 567899999999999


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      ....++..+..  .|..+...++|+| +..+|++.+.|..|.+||++..+....+   .+...++|+++
T Consensus       195 ~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~  261 (673)
T KOG4378|consen  195 QGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC  261 (673)
T ss_pred             cCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence            87766655543  3889999999999 5577889999999999999987766655   67888888775

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.2e-20  Score=143.48  Aligned_cols=197  Identities=17%  Similarity=0.252  Sum_probs=156.4

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeEEec--cCC-CCE
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPG-GGV  152 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~-~~i  152 (288)
                      ..+|++...|.|++||..+++.+..+.++...++.+.|..  ....+.+|+.||+|++||++.......+.  .+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888899999999999999999999999999999986  34578999999999999999876554433  333 467


Q ss_pred             EEEEEcCCCCEEEEecC----CCeEEEEECCcccE-EEEe-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce
Q 023018          153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LNMF-SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       153 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      .+++...+++.+++|+.    +..|.+||+|..+. +..+ ..|...|++++|+| +.+.|++|+.||.|.+||++....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            77777778888888864    67899999998765 5554 46999999999999 778999999999999999975432


Q ss_pred             eEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      --.+...-.+...|.++.|..++ +.|.+-+..+...+|++..+.....+
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            11111111167779999999876 45777888999999999988755443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=6.7e-20  Score=144.66  Aligned_cols=193  Identities=25%  Similarity=0.437  Sum_probs=156.7

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+|..+.|.+.....+|||+.|..|+||.+..+.         .+..+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            346899999999666699999999999999987532         34457789999999999999999999999999999


Q ss_pred             EeCC--------C--------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE
Q 023018          134 WDPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG  197 (288)
Q Consensus       134 ~d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  197 (288)
                      |-..        +        ......+.+|...|..++|+|++.++++++.|..+++||+..|+....+..|...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9755        2        12345567788999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-----C---------------CCccccCeEEEEEcCCCCEEEEEe
Q 023018          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----G---------------HPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~---------------~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      +|.|.++++++-+.|...+++.+...+.+....     .               ..........++|+|+|.+|++..
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999999999998888877777765433222111     0               000122346688999999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=5.8e-20  Score=144.64  Aligned_cols=164  Identities=23%  Similarity=0.366  Sum_probs=137.7

Q ss_pred             eeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCC-------ceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCe
Q 023018          102 EIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDST  172 (288)
Q Consensus       102 ~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  172 (288)
                      .+.+|.++|..++|+|- ...||+|+.|.+|.||.+..+       +.+..+.+|...|-.++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            45689999999999994 458999999999999998765       345678889999999999994 568999999999


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                      |.+|++.++..+.++. |...|+++.|+.+|.+|++.+.|..|||||.++++.+..-..|.+  ..-..+.|-.++.++.
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--AKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC--CCcceeEEeccCceee
Confidence            9999999999888887 999999999999999999999999999999999998887766532  2334556777888655


Q ss_pred             EEe---CCCcEEEEEcCCC
Q 023018          253 SGS---KDGSVHMVNITTG  268 (288)
Q Consensus       253 ~~~---~dg~i~iwd~~t~  268 (288)
                      +|-   ++.++-+||..+-
T Consensus       233 TGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             eccccccccceeccCcccc
Confidence            553   4778999987653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=1.4e-20  Score=156.34  Aligned_cols=205  Identities=18%  Similarity=0.256  Sum_probs=157.3

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEe
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWD  135 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d  135 (288)
                      ...|+.+.|.|.+...||+++.||.|++|.+..+       .+...+..|...|+++.|+|- .+.|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            4569999999999999999999999999999753       455678889999999999994 45899999999999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeecc-CCCeEEEEEcCCCCEEEEEeCCC
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGH-GSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      +.+++....+.+|.+.|..++|+|+|+.+++.++||+|++|..+++. +++.-++. ...--.|.|.-+|+++++.+.|.
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            99999999999999999999999999999999999999999998764 34333321 22335677888999988877654


Q ss_pred             ----eEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcE
Q 023018          214 ----TLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       214 ----~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                          .|.+||..+..  .+.+....  ....+.--.+.+|. .++++|-.|..|++|.+.--.+
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lD--vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLD--VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeec--ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence                68889876432  22222111  01111111345554 4566888899999999865443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=2e-19  Score=138.10  Aligned_cols=208  Identities=16%  Similarity=0.215  Sum_probs=168.9

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      +.+.--..+|+|.+|++ +...+|++.....|.||.....   +..+++..|...|+.++|+|..+.|++|+.|..-++|
T Consensus         4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            44444568999999999 8889999999999999998764   4677889999999999999999999999999999999


Q ss_pred             eCCCC---ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCCCEEE
Q 023018          135 DPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       135 d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      ....+   ++...+..+....+++.|+|.++.|++|+....|.||-++...-    .+.-+.+.+.|+++.|+|++-+|+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            98433   34445566788899999999999999999999999998865421    122234567899999999999999


Q ss_pred             EEeCCCeEEEEeCC-----C-------------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          208 TGSDDATLRVWNPK-----S-------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       208 ~~~~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +|+.|+..|||..-     .             |++...+.   ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999999642     1             11111121   256779999999999999999999999999987664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.85  E-value=2.6e-18  Score=134.30  Aligned_cols=196  Identities=19%  Similarity=0.230  Sum_probs=157.4

Q ss_pred             CEEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      .|--+-|+.   .++|..+.+  ..+++++++....+..+. ...+|.++.++.  ++|+++-.+ .|+|||+.+.++++
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLh  120 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLH  120 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeeh
Confidence            455566654   355544443  459999999888888776 567899999964  466666554 49999999999998


Q ss_pred             Eecc---CCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe-EEE
Q 023018          144 TLEG---PGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRV  217 (288)
Q Consensus       144 ~~~~---~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~-i~i  217 (288)
                      ++..   +..++.++++++.+.+++.-+  ..|.|.+||+.+-+++..+..|++++.+++|+++|.+||+++..|+ |||
T Consensus       121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV  200 (391)
T ss_pred             hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence            8764   333466666666666887643  4699999999999999999999999999999999999999999997 699


Q ss_pred             EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      |.+.+|+.+..++.... ...|.+++|+|++++|++.+..++|++|.+.+..
T Consensus       201 f~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  201 FSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            99999999999986543 5678999999999999999999999999997643

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1e-19  Score=137.99  Aligned_cols=203  Identities=16%  Similarity=0.233  Sum_probs=157.3

Q ss_pred             ecCCCCEEEEEEcCCC----CcEEEEEeCCCeEEEEEccC--Cee--eEee-----ccccCcEEEEEEec-CCCEEEEEe
Q 023018           61 SGHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQ--GDW--ASEI-----QGHKDSVSSLAFSM-DGQLLASGG  126 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~--~~~--~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~  126 (288)
                      ..|.-+++.+.|.|+.    ..+|||++  -.+++|.+..  .+.  ...+     ..+.++++++.|+. +-++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4688899999999943    35777766  5799999874  221  1111     23567999999986 556899999


Q ss_pred             CCCeEEEEeCCCCc---eeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEE
Q 023018          127 LDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDF  199 (288)
Q Consensus       127 ~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~  199 (288)
                      -|.+..|||+.++.   ....+-.|...|..++|...+. .||+.+.||.+++||+|...--..+   .....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999873   3556778999999999998544 8899999999999999976432222   223567889999


Q ss_pred             cC-CCCEEEEEeCC-CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 023018          200 TP-DGKTICTGSDD-ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       200 ~p-~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ++ +.+++++-..| ..|.|.|++.. .++..++.   |...|+.++|.| ....|++++.|..+.+||+.+.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            98 56777775554 46999999853 45566666   889999999999 5678999999999999999764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=4.9e-19  Score=148.15  Aligned_cols=211  Identities=19%  Similarity=0.348  Sum_probs=167.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--------eeEee--------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--------WASEI--------------------  103 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~--------------------  103 (288)
                      ..+...+.+++|.+.|+|++|+. ++..+|+|+.|..|.+|...-..        .++.+                    
T Consensus        41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW  119 (1081)
T KOG1538|consen   41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW  119 (1081)
T ss_pred             CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence            44678899999999999999999 88999999999999999864211        11100                    


Q ss_pred             -------c--cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec---cCCCCEEEEEEcCCC-----CEEEE
Q 023018          104 -------Q--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPRG-----HIVLA  166 (288)
Q Consensus       104 -------~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~  166 (288)
                             .  .....+.+.+|..+|++|+.|-.+|+|.+-+-. ++....+.   +..++|.+++|+|..     ..+++
T Consensus       120 S~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  120 SPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             ChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence                   0  123467888999999999999999999998743 43333333   467799999999943     37888


Q ss_pred             ecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                      .....++.+|.+ +|+.+..-+...-...|+.+.|+|.+++.|+.|+.+.+|- +.|-.+.++..   ....|+.++..|
T Consensus       199 ~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~---~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  199 ADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE---QDSWIWTVQAKP  273 (1081)
T ss_pred             EeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc---cceeEEEEEEcc
Confidence            888888988887 4666665555556678999999999999999999999995 56777777665   567899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCc
Q 023018          247 DSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +++.++.|+.||+|..|++....
T Consensus       274 NsQ~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  274 NSQYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             CCceEEEEEccCeeehhhhHHhH
Confidence            99999999999999999986543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=4.6e-19  Score=151.14  Aligned_cols=217  Identities=19%  Similarity=0.234  Sum_probs=149.6

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCee--eEeeccccCcEEEEEEecCCCEEEEEe-CCCe
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGL  130 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  130 (288)
                      .+.+..|...+...+|+| +++.|+..+.+   ..|++|++.+++.  +..+.+   ....++|+|+|++|+.++ .+|.
T Consensus       196 ~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCc
Confidence            456777888999999999 66666665433   4699999988753  333333   344689999999888764 6776


Q ss_pred             EEEE--eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          131 VQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       131 i~i~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +.||  |+.++.. ..+..+...+....|+|+|+.|+.++ .+|...+|++... .....+ .+..  ....|+|+|++|
T Consensus       272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL  347 (429)
T ss_pred             EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence            5555  6665553 44555666688899999999777655 5677777776432 222222 2333  457899999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEecceEEEEEee
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI--TTGKVCCLNFQYTCVAYDL  284 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~t~~~~~~~~~~~~~~~~~  284 (288)
                      ++++.++ +.+||+.++........   .  ....+.|+|+|++|+.++.+|.+.+|.+  .+|+....+..+.+.+..|
T Consensus       348 a~~~~~~-i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p  421 (429)
T PRK01742        348 VMINGDN-VVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP  421 (429)
T ss_pred             EEEcCCC-EEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence            8887755 66699988865433222   1  2345789999999999999998888886  4688777775544444455


Q ss_pred             ccc
Q 023018          285 DFV  287 (288)
Q Consensus       285 df~  287 (288)
                      .|+
T Consensus       422 ~ws  424 (429)
T PRK01742        422 AWS  424 (429)
T ss_pred             ccC
Confidence            543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=3.5e-21  Score=164.14  Aligned_cols=210  Identities=22%  Similarity=0.423  Sum_probs=167.0

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ++.+.||..+|+|+.|.. .+.++++|+.|..++||...+..++....+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus       183 ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            455678999999999998 7889999999999999999999999999999999999999988889999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--------------Eee----------c---
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--------------MFS----------G---  189 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~----------~---  189 (288)
                      ..+.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-...+.              .+.          +   
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            9999999999999999999999954    77889999999987110000              000          0   


Q ss_pred             ---cCCCeEEEEEcCCC-----------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEE
Q 023018          190 ---HGSSVTCGDFTPDG-----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG  254 (288)
Q Consensus       190 ---~~~~i~~~~~~p~~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  254 (288)
                         ..-..-+++|....           .+.+++-.+-.+++|++.+|+..+.+.+   |...+..+.++| +..+..++
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g---hsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG---HSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc---cccceeeeeecCCCcHhhhhc
Confidence               00011112222221           1223333445678899888888877777   778899999999 55566688


Q ss_pred             eCCCcEEEEEcCCCcEEEEe
Q 023018          255 SKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.||...|||+..|.+++.+
T Consensus       415 g~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             cCCCceEeeecccCCcceee
Confidence            99999999999999998887

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.9e-17  Score=140.56  Aligned_cols=216  Identities=33%  Similarity=0.613  Sum_probs=177.1

Q ss_pred             CeeEeecCCC-CEEEEEE-cCCCCcEEEEE-eCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCe
Q 023018           56 STHIFSGHSD-EVYSVAC-SPTDATLVATG-GGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL  130 (288)
Q Consensus        56 ~~~~~~~h~~-~v~~~~~-~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~  130 (288)
                      ....+.++.. .+..+.+ ++....+++.. ..++.+.+|+... ......+..|...|..++|+|++.++++++. ++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  179 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT  179 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence            5566666443 7788877 77343255554 4499999999998 7888888899999999999999998888885 999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      +++|++..+..+..+..|...+.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++.++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  258 (466)
T COG2319         180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS  258 (466)
T ss_pred             eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence            99999999888888888999999999999988 55555899999999998777777 677777775 4489999989999


Q ss_pred             EeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      ++.++.+++|+++.... ...+   ..|...+.++.|.|++..+++++.|+.+.+|++.+........
T Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            99999999999987665 4444   2267889999999988888889889999999999887666553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=3.6e-19  Score=135.08  Aligned_cols=199  Identities=19%  Similarity=0.269  Sum_probs=155.8

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---eeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPS  137 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~  137 (288)
                      .+..++++..|+..+.+++.+++-|-+..|||+.++.   ....+-.|...|.+++|...+. .||+.+.||.+++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            4667999999999999999999999999999999863   3556778999999999998554 78999999999999999


Q ss_pred             CCceeEEec---cCCCCEEEEEEcC-CCCEEEEecCC-CeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEe
Q 023018          138 SGNLKCTLE---GPGGGVEWVSWHP-RGHIVLAGSED-STVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGS  210 (288)
Q Consensus       138 ~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~  210 (288)
                      .......+.   ....+...++|++ +-+++|+-..| ..|.|.|+|.. .++..+++|.+.|..++|.| ....|++++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            876544433   2345788999998 45577765554 57999999975 68899999999999999999 567899999


Q ss_pred             CCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 023018          211 DDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHM  262 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  262 (288)
                      .|....+||+.....   ...+.... ....|+.+.|++ .+.+++.+. +..+.+
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999999999975322   11111111 456799999997 667877664 444444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.83  E-value=4.5e-19  Score=151.19  Aligned_cols=209  Identities=21%  Similarity=0.304  Sum_probs=160.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEe----eccccCcEEEEEEecCCC--EEEEEe
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASE----IQGHKDSVSSLAFSMDGQ--LLASGG  126 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~i~~~~~~~~~~--~l~~~~  126 (288)
                      .+...+. -..+|+|+.|+|.++.++|.|..+|.|.+||+..+..  ...    ...|..+++.+.|..+..  -|++++
T Consensus       234 ~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  234 TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            3444443 3568999999999999999999999999999987654  222    235889999999976444  489999


Q ss_pred             CCCeEEEEeCCCCc---------------------------------------------e------------------eE
Q 023018          127 LDGLVQIWDPSSGN---------------------------------------------L------------------KC  143 (288)
Q Consensus       127 ~dg~i~i~d~~~~~---------------------------------------------~------------------~~  143 (288)
                      .||.|..|+++.-.                                             .                  +.
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~  392 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS  392 (555)
T ss_pred             cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc
Confidence            99999999864210                                             0                  00


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~  221 (288)
                      .+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++||| ....|+++..+|.|.+||+.
T Consensus       393 ~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  393 TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             cccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            112356789999999976655555559999999988 6677888887888899999999 45667888889999999997


Q ss_pred             CCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          222 SGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       222 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ....  +.....   .....+.+.|++.|+.|++|...|.+++|++..
T Consensus       473 ~~~~~Pv~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  473 QDDEEPVLSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccCCcccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5432  222222   456677888999999999999999999999964

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=148.80  Aligned_cols=219  Identities=19%  Similarity=0.286  Sum_probs=166.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecC--CCEEEEEeCCCeE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMD--GQLLASGGLDGLV  131 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~dg~i  131 (288)
                      ...+.|.||++-|.|+.|+. ++.+|++|+.|-.+.|||....+++..+. +|.+.|.++.|-|.  .+.+++|+.|..|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            45577899999999999999 89999999999999999999888777764 79999999999984  4588999999999


Q ss_pred             EEEeCCCC----------ceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEE----------EEeecc
Q 023018          132 QIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYL----------NMFSGH  190 (288)
Q Consensus       132 ~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~  190 (288)
                      +++|+...          .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++.....          ..+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            99999742          2344456788889999999987 68999999999999999874211          111112


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc------------------eeEEEc-CCCccc--------cCeEEE
Q 023018          191 GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGE------------------NIHVIR-GHPYHT--------EGLTCL  242 (288)
Q Consensus       191 ~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~-~~~~~~--------~~v~~~  242 (288)
                      --...++.++| +..+|++|+.+-..++||.+...                  ++.-+. ++-...        ..++-+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            23467889999 55678999999999999954211                  011111 110001        125667


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          243 TISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       243 ~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            89999977776655668999999988877655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=3e-17  Score=139.26  Aligned_cols=222  Identities=32%  Similarity=0.613  Sum_probs=180.4

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEeecccc-CcEEEEEE-ecCCC-EEEEEeC-CCeEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ  132 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~-~~i~~~~~-~~~~~-~l~~~~~-dg~i~  132 (288)
                      ..+..|...+.++.+.+ .+..++.++.++.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. ++.+.
T Consensus        59 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          59 LLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             heeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            46788999999999999 77788888899999999998876 666666544 36777777 77777 5555444 99999


Q ss_pred             EEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-EEEEE
Q 023018          133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG  209 (288)
Q Consensus       133 i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~  209 (288)
                      +|+... ......+..|...+..++|+|++..+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence            999998 7778888889999999999999998888885 99999999999888899988999999999999988 55555


Q ss_pred             eCCCeEEEEeCCCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-EEEe----cceEEEEEe
Q 023018          210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-CCLN----FQYTCVAYD  283 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~-~~~~----~~~~~~~~~  283 (288)
                      +.|+.|++||...+.... .+..   |.... ...|+|++.++++++.++.+++|++..... +..+    ..+.++.|.
T Consensus       218 ~~d~~i~~wd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         218 SSDGTIRLWDLSTGKLLRSTLSG---HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             cCCCcEEEEECCCCcEEeeecCC---CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence            899999999988777766 4554   44443 238999988888999999999999997765 4333    456666666


Q ss_pred             e
Q 023018          284 L  284 (288)
Q Consensus       284 ~  284 (288)
                      |
T Consensus       294 ~  294 (466)
T COG2319         294 P  294 (466)
T ss_pred             C
Confidence            5

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=2.2e-19  Score=148.21  Aligned_cols=205  Identities=20%  Similarity=0.232  Sum_probs=170.8

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      +.+.-.|..+|..+.|+. .|.+|++...   ...|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|
T Consensus       514 v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi  591 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI  591 (733)
T ss_pred             eEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence            667778999999999999 7888888654   356999999887766667667788999999999999988875 67999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ||+..+..+..+......|..++.+|.|..|+.|+.|+.+..||+.-. ++.++++.|...++.++|++.-.++++|+.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999998887777777778999999999999999999999999999754 6788888999999999999998999999999


Q ss_pred             CeEEEEe------CCCCc---eeEEEcCCCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          213 ATLRVWN------PKSGE---NIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       213 g~i~i~d------~~~~~---~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      |++.||-      +-...   ++..+.+|.. ....|..+.|+|...+|++++.||+|++|
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            9999884      22222   2344454321 12348889999999999999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=2.5e-18  Score=132.33  Aligned_cols=196  Identities=19%  Similarity=0.361  Sum_probs=154.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCC------------eeeEeec-cccCcEEEEEEe-------cCCCEEEEEe
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQG------------DWASEIQ-GHKDSVSSLAFS-------MDGQLLASGG  126 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~-~~~~~i~~~~~~-------~~~~~l~~~~  126 (288)
                      ...+.|+| ++..|.+-+.|..+.+|++...            +...++. .....|...+|-       |+..++++.+
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            45788999 7778888999999999998531            0111111 134567777775       5677999999


Q ss_pred             CCCeEEEEeCCCCceeEEeccCC-----CCEEEEEEcCCCCEEEEecCCCeEEEEEC-CcccEEEE---e----eccCCC
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRAAYLNM---F----SGHGSS  193 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~---~----~~~~~~  193 (288)
                      .+.-|++||.-+|+....+..-.     ....+++|+|+|..|++|.. ..|++||+ |.|.-...   +    .+..+-
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999999999888776422     24678999999999998866 89999999 55532221   1    123677


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 023018          194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT  267 (288)
Q Consensus       194 i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t  267 (288)
                      +.+++|+| +...+++|+....+-||.-..+.++..+.+   |.+.|+.++|.++|+.|++|.. +..|..||++.
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---cCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            89999999 555899999999999998877888888876   8899999999999999999875 77999999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.9e-17  Score=121.97  Aligned_cols=199  Identities=19%  Similarity=0.279  Sum_probs=152.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------eEe--eccc-----cCcEEEEEEecCCCE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASE--IQGH-----KDSVSSLAFSMDGQL  121 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~--~~~~-----~~~i~~~~~~~~~~~  121 (288)
                      .++-..++|.++|+.++|+.   .+|.+|+ ||.|+=|.......      +..  .+-|     -..|++|...|..+-
T Consensus        53 ~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS  128 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS  128 (325)
T ss_pred             cceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc
Confidence            44555699999999999983   3555555 49999998865321      111  1112     236889999998877


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc----------C
Q 023018          122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----------G  191 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~  191 (288)
                      ++.++.|+.++-||+++|+....+++|...+.++.--.....+++|+.||++++||+++++.+..+...          .
T Consensus       129 i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence            777778999999999999999999999999999998666678999999999999999999988776531          2


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ..|.+++-  +...|++|+ .-.+.+|.+++.+....+.    ...++..+.|..+  .+++++..+.|.-|.+.
T Consensus       209 ~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  209 KWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP----IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe----cccceeEeeeecc--eEEEeccccceeeeeec
Confidence            34555554  456777765 5679999999998888887    4567888888654  66677777778888764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=8.7e-17  Score=125.92  Aligned_cols=207  Identities=16%  Similarity=0.230  Sum_probs=153.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEecCCCEEEEE--eCCCeEEEEeCCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASG--GLDGLVQIWDPSS  138 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~  138 (288)
                      ..+|.++.++.   +.|+++-. ..|+|||+++.+.++++..   +...+.++++++.+.++|.=  ...|.|.|||..+
T Consensus        87 pt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   87 PTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            35677777764   34445554 4599999999999888753   45567777777777788754  3569999999999


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCe-EEEEECCcccEEEEeeccC--CCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSGHG--SSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      -+....+..|.+.+.+++|+++|.+||+++..|+ |||+.+.+|+.+..|+...  ..|.+++|+|++++|++.+..++|
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV  242 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV  242 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence            9999999999999999999999999999999997 6999999999999887433  467899999999999999999999


Q ss_pred             EEEeCCCCcee----------------------------------EEEcCCCccccCe-EEEEEc--CCCCEEEEEeCCC
Q 023018          216 RVWNPKSGENI----------------------------------HVIRGHPYHTEGL-TCLTIS--ADSTLALSGSKDG  258 (288)
Q Consensus       216 ~i~d~~~~~~~----------------------------------~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg  258 (288)
                      +||.+......                                  +.+.......... ..+.+.  +....+.+++.||
T Consensus       243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG  322 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG  322 (391)
T ss_pred             EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence            99987532100                                  0000000011111 223444  3667888899999


Q ss_pred             cEEEEEcCC--CcEEEEe
Q 023018          259 SVHMVNITT--GKVCCLN  274 (288)
Q Consensus       259 ~i~iwd~~t--~~~~~~~  274 (288)
                      .++.|.+.-  |-.+..+
T Consensus       323 ~~y~y~l~~~~gGec~li  340 (391)
T KOG2110|consen  323 HLYSYRLPPKEGGECALI  340 (391)
T ss_pred             eEEEEEcCCCCCceeEEE
Confidence            999998853  4444443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.4e-19  Score=136.79  Aligned_cols=214  Identities=19%  Similarity=0.292  Sum_probs=159.5

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeec--ccc-CcEEEEEEecCCCEEEEEe-
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQ--GHK-DSVSSLAFSMDGQLLASGG-  126 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~l~~~~-  126 (288)
                      ...+.+..+++|...+..++|... .+..+.+|+.||+|++||++......++.  .+. .+..+++.+-+++.+++|. 
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            345678888999999999999874 56788999999999999999866554443  343 4666777766777888875 


Q ss_pred             ---CCCeEEEEeCCCCce-eEE-eccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc----EEEEeeccCCCeEE
Q 023018          127 ---LDGLVQIWDPSSGNL-KCT-LEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTC  196 (288)
Q Consensus       127 ---~dg~i~i~d~~~~~~-~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~  196 (288)
                         .+-.|.+||++..+. +.. ...|..-|++++|+| +.++|++|+.||-|.+||++...    ++.++ .+.+.|.+
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~  216 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHL  216 (376)
T ss_pred             cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeee
Confidence               367899999998765 443 456889999999999 56799999999999999997642    23333 37778999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEE---------------------------------cC-----------
Q 023018          197 GDFTPDG-KTICTGSDDATLRVWNPKSGENIHVI---------------------------------RG-----------  231 (288)
Q Consensus       197 ~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------~~-----------  231 (288)
                      +.|...+ +.|.+-+..+...+|++..+.....+                                 .+           
T Consensus       217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~  296 (376)
T KOG1188|consen  217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL  296 (376)
T ss_pred             eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence            9998765 35777778888899987654321000                                 00           


Q ss_pred             ---------------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          232 ---------------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       232 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                                     ...|..-|+++.|...+.++++|++||.+.+|...
T Consensus       297 ~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  297 VDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence                           00133446667777778899999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=6.1e-19  Score=144.07  Aligned_cols=190  Identities=22%  Similarity=0.289  Sum_probs=154.8

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      +.......|.++|.|-.|+| ++.-|++++.||.|++|. ++|....++.....+|.|++|.|+...++.+. .+.+.|=
T Consensus        95 rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK  171 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK  171 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence            33445567999999999999 777888999999999999 45665566666778999999999988766653 4678888


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      .+..+..+...+.|.+-|.++.|++..+++++|+.|-..++||- .|..+..-..|..+|++++|.|+ ..++.++. .+
T Consensus       172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence            88877778888999999999999999999999999999999997 56677777789999999999999 55555553 33


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      +|            +..+  ..+.|..++|++||..+++|+..|.+.+-.
T Consensus       249 ~R------------~~~p--~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  249 AR------------FSSP--RVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ee------------ecCC--CccceEEEEEcCCCceeeccccCceEEEee
Confidence            44            2222  456789999999999999999999876643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=142.44  Aligned_cols=137  Identities=24%  Similarity=0.401  Sum_probs=120.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----------------------------eeeEeeccccCcEEEEEEe
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------------------------DWASEIQGHKDSVSSLAFS  116 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~~~~~~~~~~~i~~~~~~  116 (288)
                      ..|+|+.|-|.+..++.++-.+|.+++|+..-.                            .++..+..-.+.|+.++|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            689999999987888888899999999976310                            0111222235688999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (288)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (288)
                      |+|++||+.+.||.++|||..+.+++..++..-+...|++|+|+|++|++|+.|--|.||.+...+.+..-++|++.|..
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            99999999999999999999999988888887888999999999999999999999999999999999999999999999


Q ss_pred             EEEcC
Q 023018          197 GDFTP  201 (288)
Q Consensus       197 ~~~~p  201 (288)
                      ++|.|
T Consensus       380 VaFDp  384 (636)
T KOG2394|consen  380 VAFDP  384 (636)
T ss_pred             Eeecc
Confidence            99987

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.5e-17  Score=127.88  Aligned_cols=208  Identities=18%  Similarity=0.313  Sum_probs=146.9

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----e----------eeEeeccccCcEEEEEEecCCCEEEEEe-C
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----------WASEIQGHKDSVSSLAFSMDGQLLASGG-L  127 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  127 (288)
                      .+..|+|++|-|..+..|+.|... -|.||.....    .          .+....+| .+|++|.|+++|..+++++ .
T Consensus       139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            456899999999888899998884 5999987531    1          11223345 6899999999999999887 4


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      +..|.|||..++..+.......+.++-+.|+|++.+|++++-|+..++|...+...........+.|...+|+|.|++|+
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            67999999999987766655667799999999999999999999999996544322222223445899999999999875


Q ss_pred             EEeCCCeEEEEeCCCCc------------eeEEE---------cCCCccccCeEEEEEcCCCCEEEEEeCCC--------
Q 023018          208 TGSDDATLRVWNPKSGE------------NIHVI---------RGHPYHTEGLTCLTISADSTLALSGSKDG--------  258 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~------------~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------  258 (288)
                      .++. |.-++|.+.-..            ....+         .+.....+.+.+++|.|.|.+|++.-..+        
T Consensus       297 f~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~  375 (445)
T KOG2139|consen  297 FACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL  375 (445)
T ss_pred             EEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence            5442 333444432100            01111         11111246788999999999999875543        


Q ss_pred             cEEEEEcCCCcEEEE
Q 023018          259 SVHMVNITTGKVCCL  273 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~  273 (288)
                      .|.+||.+..-++..
T Consensus       376 ~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  376 HISRFDTRKSPPVEL  390 (445)
T ss_pred             hhhhhcccccCceEE
Confidence            477788776554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=146.04  Aligned_cols=210  Identities=20%  Similarity=0.365  Sum_probs=164.2

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .|..++|-|++..++++++  ..+.+||...|..+.++++|+..|++++|+.+|+.+|+|+.|..|.+|...-...+ . 
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-   89 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence            6999999995555555444  67999999999999999999999999999999999999999999999986533322 2 


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      ..|...|.|+.|+|-...|++++- ...-+|...+... ...+ ....+.+.+|..||++|+.|-.+|+|.+-+- +++.
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEe  165 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEE  165 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCc
Confidence            248889999999998889999887 5677888765432 2222 3456888999999999999999999999864 5665


Q ss_pred             eEEEcCCCccccCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          226 IHVIRGHPYHTEGLTCLTISADS-----TLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      .-.+..+.+...+|.+++|+|..     ..+++.....++.+|.+.. +.+..-    +...|+.|.+
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~  232 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFT  232 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheecc
Confidence            55666555578899999999942     5788889999999998864 444321    5555555544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=9.1e-20  Score=146.29  Aligned_cols=210  Identities=14%  Similarity=0.187  Sum_probs=180.9

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      -..+.++. ++..++.|+..|.|-.+|+.+++....+. -...|.++.|..+.++||++ ....++||| ..|..++.++
T Consensus       132 PY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  132 PYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             CeeeeecC-CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence            35677777 78888899999999999999999988887 46688999998888777776 567899999 5677788887


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI  226 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~  226 (288)
                      .+. .+..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-+|-...+-+|...|+|.+|......++
T Consensus       208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            664 5999999999999999999999999999999999999988899999999999899999999999999999888777


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEee
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDL  284 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~  284 (288)
                      ..+..   |.++|.++++.++|+++++.+.|..++|||+++...+.++   .+...++||.
T Consensus       287 vKiLc---H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq  344 (545)
T KOG1272|consen  287 VKILC---HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ  344 (545)
T ss_pred             HHHHh---cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc
Confidence            66665   8899999999999999999999999999999998777665   3344444443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.4e-17  Score=131.09  Aligned_cols=223  Identities=14%  Similarity=0.162  Sum_probs=174.4

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEecCCCE-EEEEeCC--C
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQL-LASGGLD--G  129 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d--g  129 (288)
                      +......+.+|..++..  ++ .|++|-.+|.+.+|....+.    .+..+.. ..++..|.-++...+ +++|+..  .
T Consensus        98 ~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen   98 AKTVSLGTKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccccccccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhccc
Confidence            34555667778888765  33 56678888999999988432    3333432 356667777776654 5558887  7


Q ss_pred             eEEEEeCCCCceeEEeccC---------CCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGP---------GGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCG  197 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~  197 (288)
                      .+.|||+...+.+..-+..         .-.++.+.|-+.  ...|++++.-+.+++||.+.+ +++..+.....+++++
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            8999999988655543321         124678888886  789999999999999999875 6888888889999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--
Q 023018          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--  274 (288)
Q Consensus       198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--  274 (288)
                      ...|.++++++|..-|.+..||++.+..... +.+   ..+.|+++..+|.+.+|++++-|..|+|+|+.|.+++...  
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCC---ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence            9999999999999999999999999887665 444   6788999999999999999999999999999997777644  


Q ss_pred             -cceEEEEEeecc
Q 023018          275 -FQYTCVAYDLDF  286 (288)
Q Consensus       275 -~~~~~~~~~~df  286 (288)
                       ...+++.+.+++
T Consensus       331 Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  331 KSRLTFILLRDDV  343 (412)
T ss_pred             hccccEEEecCCc
Confidence             456677766554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=141.60  Aligned_cols=184  Identities=17%  Similarity=0.322  Sum_probs=147.9

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  156 (288)
                      ...|+.++.||.+.|.+ +.++....+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++.....+|+|++
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            35677889999999887 45676777889999999999999999999999999999997 66666666666777899999


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc
Q 023018          157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT  236 (288)
Q Consensus       157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  236 (288)
                      |.|+.+.++.+.. +++.|=-+.....+-.+++|.+-|.++.|+|..+.+++|+.|-..+|||.. |+.+..-..   |.
T Consensus       153 W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---~e  227 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---EE  227 (737)
T ss_pred             ECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---hc
Confidence            9998877666654 677777777676778889999999999999999999999999999999975 555444333   88


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      .+|++++|.|+ ..++.++. .++++=..+.|.
T Consensus       228 y~ITSva~npd-~~~~v~S~-nt~R~~~p~~GS  258 (737)
T KOG1524|consen  228 YAITSVAFNPE-KDYLLWSY-NTARFSSPRVGS  258 (737)
T ss_pred             cceeeeeeccc-cceeeeee-eeeeecCCCccc
Confidence            99999999999 45555543 355544444443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=3.4e-18  Score=140.29  Aligned_cols=178  Identities=25%  Similarity=0.417  Sum_probs=149.5

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----------eeeEeeccccCcEEEEEEecCCC
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQ  120 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~  120 (288)
                      ....+++.+|++|.++|.|+++.+ ++..+++|+.||+|+.|++...          .....+.+|.+.|+.+++++...
T Consensus       331 ~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~  409 (577)
T KOG0642|consen  331 EKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD  409 (577)
T ss_pred             ccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc
Confidence            345688999999999999999999 8889999999999999976521          23456789999999999999888


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEe---------------------------------------------c-------cC
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTL---------------------------------------------E-------GP  148 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------------------------~-------~~  148 (288)
                      .|++++.||++++|+...... .+|                                             .       ..
T Consensus       410 ~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~  488 (577)
T KOG0642|consen  410 RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR  488 (577)
T ss_pred             ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence            999999999999998654332 111                                             0       00


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV  228 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (288)
                      ...+..+.++|...+.+++..++.|+++|..+++++.....|...++++++.|+|-+|++++.|+.+++|.+....++..
T Consensus       489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  489 YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             cCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence            12467788899999999999999999999999999999999999999999999999999999999999999876655544


Q ss_pred             Ec
Q 023018          229 IR  230 (288)
Q Consensus       229 ~~  230 (288)
                      ..
T Consensus       569 s~  570 (577)
T KOG0642|consen  569 ST  570 (577)
T ss_pred             cc
Confidence            43

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.4e-16  Score=135.72  Aligned_cols=220  Identities=18%  Similarity=0.184  Sum_probs=146.0

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCC--e
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDG--L  130 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~  130 (288)
                      .+.+..+...+...+|+| +++.|+..+   .+..|++|++.+++..... .....+..+.|+|+|+.|+.. +.+|  .
T Consensus       191 ~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~  268 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLN  268 (429)
T ss_pred             CEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence            344555677899999999 555555432   2457999999887543322 233344568999999988765 4444  5


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-C--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      |++||+.+++.... ..+...+....|+|+|+.|+..+.. +  .|+++++.++.. ..+...........|+|+|++|+
T Consensus       269 I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        269 LYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             EEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEE
Confidence            88999988765544 3344567889999999988777654 3  466667766654 33333444566789999999988


Q ss_pred             EEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCcEEEEecceEEEE
Q 023018          208 TGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS---VHMVNITTGKVCCLNFQYTCVA  281 (288)
Q Consensus       208 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~t~~~~~~~~~~~~~~  281 (288)
                      ..+.+   ..|.+||+.++... .+...    .......|+|||++|+.++.++.   ++++++. |+....+..+...+
T Consensus       347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~  420 (429)
T PRK03629        347 MVSSNGGQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQV  420 (429)
T ss_pred             EEEccCCCceEEEEECCCCCeE-EeCCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCc
Confidence            76543   35889999887643 34321    12345689999999998887764   6777774 55555554333344


Q ss_pred             Eeecc
Q 023018          282 YDLDF  286 (288)
Q Consensus       282 ~~~df  286 (288)
                      ..|.|
T Consensus       421 ~~p~W  425 (429)
T PRK03629        421 KFPAW  425 (429)
T ss_pred             CCccc
Confidence            44444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.7e-17  Score=139.99  Aligned_cols=222  Identities=16%  Similarity=0.239  Sum_probs=178.9

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeeeEee--------------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDA--TLVATGGGDDKGFFWRINQGDWASEI--------------------------  103 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------------  103 (288)
                      ..+..++.+.+|..+++.+.+.|...  .++++++.+|.|++|+...+..++++                          
T Consensus        45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            34566778899999999999999555  57779999999999998665433322                          


Q ss_pred             -----------------------------------------------------------------------------ccc
Q 023018          104 -----------------------------------------------------------------------------QGH  106 (288)
Q Consensus       104 -----------------------------------------------------------------------------~~~  106 (288)
                                                                                                   ..|
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H  204 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH  204 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence                                                                                         125


Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC--C--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018          107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (288)
                      ...+++.+++|+++++|+|..||.|.+|.--.  .  ...+.+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            55678999999999999999999999996432  1  2344566688899999999999999999999999999999988


Q ss_pred             EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc--------ccCeEEEEEcCCCCEEEEE
Q 023018          183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALSG  254 (288)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~  254 (288)
                       .+-+....++|..+.++|++.+.++...|..|.+....+.....++.+..+.        ..-.+.++++|..+.++-.
T Consensus       285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln  363 (792)
T KOG1963|consen  285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN  363 (792)
T ss_pred             -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence             4445557889999999999999999999999999988766655555544322        3446778999977788888


Q ss_pred             eCCCcEEEEEcCCCcEEEEe
Q 023018          255 SKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..|.|.+||+.+.+.+..+
T Consensus       364 ~~~g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  364 GHPGHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             CCCceEEEEeccccceeeeE
Confidence            89999999999998877655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.79  E-value=8.1e-17  Score=121.93  Aligned_cols=155  Identities=16%  Similarity=0.273  Sum_probs=113.7

Q ss_pred             EEEEEecCCCEEEEEeC----------CCeEEEEeCCC-CceeEEecc-CCCCEEEEEEcCCCCEEEEe--cCCCeEEEE
Q 023018          111 SSLAFSMDGQLLASGGL----------DGLVQIWDPSS-GNLKCTLEG-PGGGVEWVSWHPRGHIVLAG--SEDSTVWMW  176 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~  176 (288)
                      ..+.|+|+|++|++-..          -|...+|.++. +.....+.. ..++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999987665433          13455555532 223333332 34579999999999987654  456799999


Q ss_pred             ECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE
Q 023018          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS  253 (288)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (288)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||.++.+.+....    + ..++.++|+|+|++|++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----H-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----c-CcEEEEEEcCCCCEEEE
Confidence            996 66666664  567889999999999999874   4679999999887776654    3 34789999999999998


Q ss_pred             EeC------CCcEEEEEcCCCcEEEEe
Q 023018          254 GSK------DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       254 ~~~------dg~i~iwd~~t~~~~~~~  274 (288)
                      +..      |+.++||++. |+++...
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeEec
Confidence            864      7889999985 6666543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=8.8e-18  Score=140.00  Aligned_cols=216  Identities=18%  Similarity=0.299  Sum_probs=166.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--e----EeeccccCcEEEEEEecCCCEEEEEeC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A----SEIQGHKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~----~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      .+.+.++.+|.+.|+.+.|+|....+||+|+.|..|+||.+..+..  +    ..+.+..-.+-++.|+|...-|+..+.
T Consensus        69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a  148 (1012)
T KOG1445|consen   69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA  148 (1012)
T ss_pred             ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc
Confidence            3467789999999999999998889999999999999999985321  1    123333457889999997776666667


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-ccEEEEeeccCCC-eEEEEEcCCCCE
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSS-VTCGDFTPDGKT  205 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-i~~~~~~p~~~~  205 (288)
                      .|+++|||+.+++.+..+.+|...|.+..|+.+|.+++++++|..|+|||.+. +.+++...+|.+. -..+.|.-+-..
T Consensus       149 ~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r  228 (1012)
T KOG1445|consen  149 HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER  228 (1012)
T ss_pred             CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence            89999999999999999999999999999999999999999999999999986 4677877877653 345677655456


Q ss_pred             EEEEeCC----CeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEE
Q 023018          206 ICTGSDD----ATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       206 l~~~~~d----g~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~~  271 (288)
                      |++.+.+    ..|++||.+.. ..+.++.-.  ....|.---|.||.++|+. |-.+.+++.+.+...++.
T Consensus       229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld--~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPy  298 (1012)
T KOG1445|consen  229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELD--SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPY  298 (1012)
T ss_pred             hhhcccchhhheeeeeeeccccCCcceeEEee--cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcc
Confidence            6665543    46899998754 344444322  2344555568888777664 555788999998765543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2.2e-16  Score=134.98  Aligned_cols=209  Identities=18%  Similarity=0.213  Sum_probs=141.9

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCC--
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDG--  129 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--  129 (288)
                      ..+.+..|...+.+.+|+| +++.|+..+.   ...|++|++.+++... +....+...++.|+|+|+.|+ +.+.+|  
T Consensus       195 ~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             CceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence            3455666778899999999 6666665543   3469999998776533 333444556789999999775 445555  


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      .|++||+.+++.. .+..+.......+|+|+|+.|+.++. +|  .|+++++.+++... +.........++|+|+|++|
T Consensus       273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEE
Confidence            6999999887654 34444444567899999998887764 44  47777877665433 32233445578999999999


Q ss_pred             EEEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe
Q 023018          207 CTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN  274 (288)
Q Consensus       207 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~  274 (288)
                      +..+.++   .|.+||+.+++.. .+..    ........|+|+|++|+..+.+   +.|+++++..+ ....+
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l  418 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL  418 (433)
T ss_pred             EEEECCCCceeEEEEECCCCCeE-ECCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence            8765443   6999999877654 3332    1233456899999988766553   46888888544 44444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5.8e-16  Score=132.55  Aligned_cols=209  Identities=15%  Similarity=0.160  Sum_probs=146.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  129 (288)
                      ....+.+..|...+...+|+| +++.|+..+.   +..|++|++.+++.. .+..+.+.+...+|+|+|+.|+ +.+.+|
T Consensus       191 g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence            344456777888999999999 5555555442   468999999887653 3444566778899999999775 445555


Q ss_pred             e--EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          130 L--VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       130 ~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      .  |++||+.++... .+..+........|+|+|+.|+..+. +  ..|+++|+..+... .+......+....|+|+|+
T Consensus       269 ~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~  346 (435)
T PRK05137        269 NTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGD  346 (435)
T ss_pred             CceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCC
Confidence            4  777898877653 44445555677999999998887764 3  36888898766543 3433445567788999999


Q ss_pred             EEEEEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCcEE
Q 023018          205 TICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITTGKVC  271 (288)
Q Consensus       205 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~t~~~~  271 (288)
                      +|+....+   ..|.+||+.++. ...+..    ...+....|+|+|+.|+..+.+      ..++++++.+++..
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~----~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSG-ERILTS----GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCc-eEeccC----CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            99877643   368889986554 334432    2246678999999988765442      36888998776654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=8.1e-16  Score=127.25  Aligned_cols=202  Identities=12%  Similarity=0.176  Sum_probs=135.8

Q ss_pred             CEEEEEEcCCCCcEEEEE-eCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC
Q 023018           66 EVYSVACSPTDATLVATG-GGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSG  139 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  139 (288)
                      ....++|+| ++++++++ ..++.|.+|++.+.    +.+..+. +......++++|+++++++++ .++.|.+||+.+.
T Consensus        81 ~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         81 SPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            457899999 55555554 45899999999742    2223333 223457788999999886554 6699999999764


Q ss_pred             ceeE-------EeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCc--c--cEEEEeecc------CCCeEEEEEcC
Q 023018          140 NLKC-------TLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A--AYLNMFSGH------GSSVTCGDFTP  201 (288)
Q Consensus       140 ~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~i~~~~~~p  201 (288)
                      ..+.       ... .......+.|+|++++++++.. ++.|.+|++..  +  +.+..+...      ......+.++|
T Consensus       159 g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            3221       111 2345778999999999988876 89999999973  2  223333221      11234688999


Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC--CCcE
Q 023018          202 DGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNIT--TGKV  270 (288)
Q Consensus       202 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~--t~~~  270 (288)
                      ++++|+++.. ++.|.+|++........+............+.++|+|++|++++. ++.|.+|++.  +|.+
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            9999998864 689999998643321222211111234567899999999998775 8899999874  4543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=1.3e-16  Score=141.75  Aligned_cols=223  Identities=15%  Similarity=0.157  Sum_probs=167.6

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCCCEE
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQLL  122 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l  122 (288)
                      ..+.+..+..+..|+..|..++.++..+.++++|+.||+|++|+....       +...++......+.++...+.+..+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            356677888999999999999999966699999999999999998752       2223344356788999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcee-------EEeccC-CCC-EEEEEEcC-CC-CEEEEecCCCeEEEEECCcccEEEEee--c
Q 023018          123 ASGGLDGLVQIWDPSSGNLK-------CTLEGP-GGG-VEWVSWHP-RG-HIVLAGSEDSTVWMWNADRAAYLNMFS--G  189 (288)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~-------~~~~~~-~~~-i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~  189 (288)
                      |+++.||.|++.++......       .....+ .+. +...+|.. .+ ..++.++..+.|..||++......+++  .
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999999998763111       111111 122 33333332 22 378888899999999999876554443  3


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC---CCCEEEEEe--CCCcEEEEE
Q 023018          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA---DSTLALSGS--KDGSVHMVN  264 (288)
Q Consensus       190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~--~dg~i~iwd  264 (288)
                      ..+.|++++.+|.+++++.|+..|.+.+||++=+.++......  +..+++.+..+|   .....++++  ..+.|.+|+
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            4578999999999999999999999999999988777776543  457788887776   234555544  467899999


Q ss_pred             cCCCcEEEEe
Q 023018          265 ITTGKVCCLN  274 (288)
Q Consensus       265 ~~t~~~~~~~  274 (288)
                      +.+|.+-.++
T Consensus      1272 ~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1272 METGLRQTVL 1281 (1431)
T ss_pred             cccCcceEEE
Confidence            9999776665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1e-16  Score=126.66  Aligned_cols=218  Identities=16%  Similarity=0.239  Sum_probs=165.9

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC------CeeeEeec-cccCcEEEEEEecCCCEEEEEeCC
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      ..+-+.+|.+-|.++.|+. ++++||+|+.|..+++|++..      .+++.... .|...|.|++|....+++++|..+
T Consensus        48 ~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3455678999999999999 789999999999999999864      34444443 356899999999988899999999


Q ss_pred             CeEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEE--EeeccCCCeEEEEEcC-C
Q 023018          129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLN--MFSGHGSSVTCGDFTP-D  202 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~i~~~~~~p-~  202 (288)
                      ++|.+.|+.+.+.+..+..  ..+.|+.+..+|..+.|++.+.+|.|.+||.+... .+.  ...........+.|+| .
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            9999999999988887753  33589999999999999999999999999998754 221  2222445678889999 5


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce-eEE---EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          203 GKTICTGSDDATLRVWNPKSGEN-IHV---IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..+|++.+..+.+.+||++..+. +..   +.+.+.....-.++.|+|.|..|.+.-....-.+||+-+.++....
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK  282 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence            56778888889999999985432 111   1111112223356789999998888766666777888776655443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=4.1e-16  Score=132.95  Aligned_cols=207  Identities=21%  Similarity=0.205  Sum_probs=136.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeC-C--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGG-D--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQI  133 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i  133 (288)
                      +.+..+...+.+.+|+| +++.|+..+. +  ..|++|++.+++... +....+.+.+..|+|+|+.|+ +.+.+|...|
T Consensus       189 ~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        189 QSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             eEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence            44556778899999999 5566655443 2  459999998876543 333345567899999999876 4567777666


Q ss_pred             Ee--CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEE--ECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          134 WD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       134 ~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      |.  +..+. ...+..+........|+|+|+.|+..+. +|...+|  ++.++.... +...........|+|+|++|+.
T Consensus       267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~  344 (427)
T PRK02889        267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAY  344 (427)
T ss_pred             EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEE
Confidence            64  44444 4445445555667899999998876654 4555555  544544322 2222333456789999999987


Q ss_pred             EeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEe
Q 023018          209 GSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLN  274 (288)
Q Consensus       209 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~  274 (288)
                      .+.++   .|.+||+.+++... +..    ........|+|+|+.|+.++.++   .+++.++ +|+....+
T Consensus       345 ~s~~~g~~~I~v~d~~~g~~~~-lt~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l  410 (427)
T PRK02889        345 ISRVGGAFKLYVQDLATGQVTA-LTD----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL  410 (427)
T ss_pred             EEccCCcEEEEEEECCCCCeEE-ccC----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence            77554   69999998876543 332    12235679999999888776543   4666676 45555544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.5e-17  Score=130.94  Aligned_cols=174  Identities=19%  Similarity=0.253  Sum_probs=134.7

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-
Q 023018          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-  189 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  189 (288)
                      ..++|+.+|..+++|+.||++|||+..+...+.....|...|.++.|+|+|++|++-+.+ ..+||+++++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999988888777788899999999999999999999998 999999999976665542 


Q ss_pred             -cCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          190 -HGSSVTCGDFTPDG---KT--ICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       190 -~~~~i~~~~~~p~~---~~--l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                       .......+.|+.++   .+  ++.....+.|+.|++.....  .......-.....|++++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             23345667777765   22  22333455677777653322  111111111345799999999999999999999999


Q ss_pred             EEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          262 MVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       262 iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      |++..+.+++...     .-++.+.|+||
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            9999999888766     45677888876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.5e-15  Score=116.84  Aligned_cols=177  Identities=14%  Similarity=0.280  Sum_probs=139.3

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEEeccCC--CCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCTLEGPG--GGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~  163 (288)
                      ..|.|||-...+++.++. ...+|.++.+.++  .|++.- .+.|+||... +.+.++.+....  .+..+++-+.+..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            469999977777777776 6789999999765  555554 5789999988 556666665332  22444443334445


Q ss_pred             EEE-ecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeEEEcCCCccccCe
Q 023018          164 VLA-GSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIRGHPYHTEGL  239 (288)
Q Consensus       164 l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~v  239 (288)
                      ||. |-.-|.|.|-|+...+.  ...+.+|.+.|.|++++-+|..+|+++..|+ |||||..+|.++..++... ....|
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheE
Confidence            555 34569999999987654  4778899999999999999999999999997 6999999999999987543 45679


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          240 TCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      .+++|+|+..+|++++..|+++|+.++..
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999999999753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.75  E-value=7e-16  Score=116.82  Aligned_cols=156  Identities=17%  Similarity=0.338  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcEEEEEeC---------CCeEEEEEccC-CeeeEeecc-ccCcEEEEEEecCCCEEEEE--eCCCeEEEE
Q 023018           68 YSVACSPTDATLVATGGG---------DDKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIW  134 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~  134 (288)
                      ..+.|+|.+..+++....         -|...+|.++. ......+.- ..++|.+++|+|+++.||+.  ...+.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            457899955555544441         23456666633 233444432 34579999999999987655  356799999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||+++.+.+.... | ..++.++|+|+|++|++++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            996 55566554  456889999999999999874   4679999999888887765 3 34789999999999998874


Q ss_pred             ------CCeEEEEeCCCCceeEEE
Q 023018          212 ------DATLRVWNPKSGENIHVI  229 (288)
Q Consensus       212 ------dg~i~i~d~~~~~~~~~~  229 (288)
                            |..++||+.. |+.+...
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ccceeccccEEEEEec-CeEeEec
Confidence                  6788999984 6655543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=4e-15  Score=123.11  Aligned_cols=209  Identities=15%  Similarity=0.219  Sum_probs=139.1

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-Cee--eEeeccccCcEEEEEEecCCCEEEEEe-CCCe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATG-GGDDKGFFWRINQ-GDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  130 (288)
                      .++.+. +.+....++++| ++++|+++ ..++.|.+|++.. ++.  +.... .......++|+|++++|++++ .++.
T Consensus        27 ~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~  103 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC  103 (330)
T ss_pred             eeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence            334443 235577899999 56665544 5578899999973 332  22222 233457899999999888776 4889


Q ss_pred             EEEEeCCCCc----eeEEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEEE-----ee-ccCCCeEEEEE
Q 023018          131 VQIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNM-----FS-GHGSSVTCGDF  199 (288)
Q Consensus       131 i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~-~~~~~i~~~~~  199 (288)
                      |.+|++.+..    ....+. +......++++|+++++++++ .++.|.+||+.+...+..     .. ........+.|
T Consensus       104 v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~  182 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF  182 (330)
T ss_pred             EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence            9999986432    222222 223467789999999886555 569999999976332211     11 12345678999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEeCCC--Cc--eeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 023018          200 TPDGKTICTGSD-DATLRVWNPKS--GE--NIHVIRGHPY---HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTG  268 (288)
Q Consensus       200 ~p~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~  268 (288)
                      +|++++|++++. ++.|.+|++..  +.  .+..+...+.   .......+.++|++++|+++.. ++.|.+|++.+.
T Consensus       183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            999999988876 89999999873  32  2333322111   1122346889999999998854 789999999643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.5e-16  Score=122.47  Aligned_cols=201  Identities=17%  Similarity=0.244  Sum_probs=154.4

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc-cCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      ..-++.++++.|...|+++.|+| ..+.|++|+.|..-++|.. ..+  ++...+..++..++++.|+|..+.||+|+..
T Consensus        43 ~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga  121 (361)
T KOG1523|consen   43 DLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA  121 (361)
T ss_pred             CCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence            34678899999999999999999 7778899999999999998 333  3455566789999999999999999999999


Q ss_pred             CeEEEEeCCCCcee----EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-----c-------------ccEEEE
Q 023018          129 GLVQIWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-----R-------------AAYLNM  186 (288)
Q Consensus       129 g~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~-------------~~~~~~  186 (288)
                      ..|.||-+....--    +.-+.+.+.|.++.|+|++-++++|+.|+.+++|..-     .             |.++..
T Consensus       122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence            99999987654321    1223456789999999999999999999999999641     0             233444


Q ss_pred             eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC
Q 023018          187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (288)
Q Consensus       187 ~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (288)
                      +....+.+..+.|+|+|..|+-.+.|+.+.+-|..... .+..+..   ..-+..++.|-.+... +.++.|
T Consensus       202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~---~~lP~ls~~~ise~~v-v~ag~~  269 (361)
T KOG1523|consen  202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT---AQLPLLSVSWISENSV-VAAGYD  269 (361)
T ss_pred             hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh---ccCCceeeEeecCCce-eecCCC
Confidence            54567889999999999999999999999999976553 2333332   2356677777654433 334444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=3.2e-17  Score=122.96  Aligned_cols=157  Identities=21%  Similarity=0.322  Sum_probs=128.0

Q ss_pred             CCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCe----------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           64 SDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        64 ~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .+.+.|..+....  .-++++|..+|.+.+||+.++.          ....+..|..+|.++.|.+.-..=++|+.+-.+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            4667777755433  3467788899999999999873          333445699999999998766666788888889


Q ss_pred             EEEeCCCC--c--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          132 QIWDPSSG--N--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       132 ~i~d~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      ..|.+...  .  .........-.+..+..-|+++.+|+++.||.|++|..++..++..++.|...|.+++|+|+...++
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA  309 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence            99988643  2  1122222344588899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeC
Q 023018          208 TGSDDATLRVWNP  220 (288)
Q Consensus       208 ~~~~dg~i~i~d~  220 (288)
                      +++.|++|.+|++
T Consensus       310 aaskD~rISLWkL  322 (323)
T KOG0322|consen  310 AASKDARISLWKL  322 (323)
T ss_pred             hccCCceEEeeec
Confidence            9999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=2.8e-18  Score=137.86  Aligned_cols=188  Identities=19%  Similarity=0.272  Sum_probs=157.5

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      |..+.|-. +..++|++.. ..++|||- .|..++.+..| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+.
T Consensus       173 v~Dv~~LH-neq~~AVAQK-~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~  248 (545)
T KOG1272|consen  173 VRDVTFLH-NEQFFAVAQK-KYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR  248 (545)
T ss_pred             hhhhhhhc-chHHHHhhhh-ceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH
Confidence            44445554 5567776665 78999995 46667777755 578899999998889999999999999999999999999


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI  226 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~  226 (288)
                      ...+.+..++-+|-+..+-+|...|+|.+|......++..+..|.++|.++++.+.|+|++|++.|..++|||++....+
T Consensus       249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            88899999999999899999999999999999999998888899999999999999999999999999999999988766


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .++..    ..+...+++|..|  +++.+....|.||.
T Consensus       329 ~t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  329 HTYRT----PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ceeec----CCCcccccccccc--ceeeecCCeeeeeh
Confidence            66653    3456678888654  34445666899995

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.7e-16  Score=132.27  Aligned_cols=160  Identities=24%  Similarity=0.379  Sum_probs=130.4

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      .|+-.++|.+++| .++++|+|..||+|.+|.-..    ......+..|...|++++|+++|.+|++|+..|.+.+|.+.
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            4677799999999 899999999999999997543    12344567789999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-----------cCCCeEEEEEcCCCCEE
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~p~~~~l  206 (288)
                      +++ .+.++.-.++|..+.++|++...+....|..|.+....+.....++.+           ..+-.+.++++|.-+.+
T Consensus       282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~  360 (792)
T KOG1963|consen  282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL  360 (792)
T ss_pred             CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence            998 566777888999999999999999999999999988755443333322           12345677888877777


Q ss_pred             EEEeCCCeEEEEeCCCC
Q 023018          207 CTGSDDATLRVWNPKSG  223 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~  223 (288)
                      +..+..|.|.+||+.+.
T Consensus       361 vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             eecCCCceEEEEecccc
Confidence            88888888888887653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=7.8e-16  Score=121.43  Aligned_cols=178  Identities=16%  Similarity=0.238  Sum_probs=146.4

Q ss_pred             CEEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeeeEeeccc---------cCcEEEEEEecC--CCEEEEEeCCCeEE
Q 023018           66 EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMD--GQLLASGGLDGLVQ  132 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~---------~~~i~~~~~~~~--~~~l~~~~~dg~i~  132 (288)
                      .+..+.-++....++|+|+..  ..+.|||+...+.+..-+.-         .-.++++.|-+.  ...||+++.-+.++
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            456666666677889999998  88999999988665554321         123567888876  67899999999999


Q ss_pred             EEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCCEEEEEe
Q 023018          133 IWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +||.+.+ +++..+.....+++++...|.++++++|..-|.+..||+++++.... +.+..+.|+++..+|...+|++++
T Consensus       230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence            9999876 46777777888999999999999999999999999999999988776 888999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                      -|..|||+|+.+.+.+...-    ....++++.+.++
T Consensus       310 LDRyvRIhD~ktrkll~kvY----vKs~lt~il~~~~  342 (412)
T KOG3881|consen  310 LDRYVRIHDIKTRKLLHKVY----VKSRLTFILLRDD  342 (412)
T ss_pred             cceeEEEeecccchhhhhhh----hhccccEEEecCC
Confidence            99999999999866554433    4556677777653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.9e-17  Score=135.86  Aligned_cols=168  Identities=26%  Similarity=0.419  Sum_probs=135.9

Q ss_pred             eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEE
Q 023018           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM  175 (288)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i  175 (288)
                      ....+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||....++++.+. +|...|.++.|-|  +.+++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345688999999999999999999999999999999999888888775 6889999999999  5669999999999999


Q ss_pred             EECCcc----------cEEEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee-------EEEcCCCcccc
Q 023018          176 WNADRA----------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTE  237 (288)
Q Consensus       176 ~d~~~~----------~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~  237 (288)
                      ||+...          .....+..|...|..|+-.|++ ..+.+++.||+|+-||++....-       ..+......--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999742          3445566788889999999977 78899999999999999863211       11111111223


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 023018          238 GLTCLTISA-DSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ...++..+| +..+|++|+.|-..++||.+
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            467889999 56789999999999999953

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.5e-15  Score=125.38  Aligned_cols=209  Identities=17%  Similarity=0.196  Sum_probs=158.4

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe----------------------------ecccc------
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----------------------------IQGHK------  107 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------~~~~~------  107 (288)
                      +|....+.|..+|++..++|+|..--.|++||+........                            +..|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            57788899999998888899999999999999975431110                            01111      


Q ss_pred             -----CcEEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc
Q 023018          108 -----DSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA  181 (288)
Q Consensus       108 -----~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  181 (288)
                           ..-.+++++. ... |++++....|+=+++..|+.+..+....+.++++..++-..+|++|+.+|.|-+||.+..
T Consensus       129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence                 1123444442 333 344444556888899999999888888889999999999999999999999999999987


Q ss_pred             cEEEEeec------cCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC--C
Q 023018          182 AYLNMFSG------HGS-----SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--S  248 (288)
Q Consensus       182 ~~~~~~~~------~~~-----~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  248 (288)
                      ..+..+..      |.+     .|+++.|+.+|-.+++|+..|.+.|||+++.+++..-..  ....+|..+.|.+.  +
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--GYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--CCccceeeecccccCCC
Confidence            66655532      222     489999999999999999999999999999887655432  25678899999874  3


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          249 TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..|++. ....++|||-.+|+....+
T Consensus       286 ~~v~S~-Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWDECTGKPMASI  310 (703)
T ss_pred             ceEEec-chHHhhhcccccCCceeec
Confidence            455544 5678999999999998876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.5e-15  Score=129.60  Aligned_cols=190  Identities=18%  Similarity=0.204  Sum_probs=130.5

Q ss_pred             CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH  162 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  162 (288)
                      +..|.+||..... ...+..+...+.+.+|+|+|++|+.++.+   ..|++||+.+++.... ....+....++|+|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence            4689999987554 45566678889999999999999887643   4799999988754322 21222345689999999


Q ss_pred             EEEEec-CCCeE--EEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-ceeEEEcCCCcccc
Q 023018          163 IVLAGS-EDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE  237 (288)
Q Consensus       163 ~l~~~~-~dg~i--~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~~  237 (288)
                      .|++++ .+|.+  ++||+.++. ...+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .   +..
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~---~~~  335 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G---GRG  335 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c---CCC
Confidence            888765 57765  455766655 344555666788899999999877655 5677788875432 222333 2   222


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--FQYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--~~~~~~~~~~d  285 (288)
                        ....|+|+|+.|+..+.+ .+.+||+.+++.....  .....+.|+||
T Consensus       336 --~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPd  382 (429)
T PRK01742        336 --YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTFLDESPSISPN  382 (429)
T ss_pred             --CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCCCCCCceECCC
Confidence              356899999999887765 4667999998765433  22344556665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=8.6e-16  Score=134.81  Aligned_cols=221  Identities=16%  Similarity=0.238  Sum_probs=156.4

Q ss_pred             CCEEEEEEcC-CCCcEEEEEeCCCeEEEEEccC-----CeeeEeecc-------ccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           65 DEVYSVACSP-TDATLVATGGGDDKGFFWRINQ-----GDWASEIQG-------HKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        65 ~~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ..|+.+.+-. ++..++.+|+.||.|+||+--.     .+.+....+       ..+.-.-+.|.....+|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4577777654 4567889999999999997432     223322221       11111345677666677777778899


Q ss_pred             EEEeCCCCceeEEecc-CCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc---EEEEeeccCCC--eEEEEEcCCCC
Q 023018          132 QIWDPSSGNLKCTLEG-PGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSS--VTCGDFTPDGK  204 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~p~~~  204 (288)
                      +|||.........+.. ....++++.-+. .|+.+++|..||.|++||.|...   .+..++.|...  |..+.+.+.|-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            9999998877776653 334566665543 57899999999999999998653   56777788877  99999999665


Q ss_pred             E-EEEEeCCCeEEEEeCCCCceeE--EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-------
Q 023018          205 T-ICTGSDDATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-------  274 (288)
Q Consensus       205 ~-l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-------  274 (288)
                      . |++|+.+|.|++||++......  .+..+....+.++++..+++..++++|+. +.|+||++... .+..+       
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFM 1347 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccc
Confidence            5 9999999999999999742222  22221112335999999999999999988 99999998743 33322       


Q ss_pred             ----cceEEEEEeeccc
Q 023018          275 ----FQYTCVAYDLDFV  287 (288)
Q Consensus       275 ----~~~~~~~~~~df~  287 (288)
                          ....|++|.|-..
T Consensus      1348 ~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             cCcCCCcceeeecchhH
Confidence                3456777776543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.2e-15  Score=125.19  Aligned_cols=192  Identities=15%  Similarity=0.095  Sum_probs=134.8

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      ..|.++|... .....+..+...+.+.+|+|+|+.|+..+.   +..|.+||+.+++.. .+....+.+...+|+|+|+.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            3788888754 444556667889999999999998887753   468999999888654 34445556788999999997


Q ss_pred             EEE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018          164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      |+. .+.++  .|++||+.++.. ..+..+........|+|+|++|+..+. +|  .|+++|+.++... .+..   ...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~---~~~  334 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF---GGG  334 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec---CCC
Confidence            764 44454  488889987764 445555556678899999999887664 33  6888898766543 3332   234


Q ss_pred             CeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN--FQYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~--~~~~~~~~~~d  285 (288)
                      .+....|+|+|+.|+..+.+   ..|.+|++.++......  .....+.|+||
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spD  387 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPN  387 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCC
Confidence            45667899999998876543   36888998765543222  23456666665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=2e-14  Score=122.17  Aligned_cols=223  Identities=14%  Similarity=0.136  Sum_probs=141.6

Q ss_pred             EeecCCCCEEEEEEcCCCCc--EEEEEeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CC----
Q 023018           59 IFSGHSDEVYSVACSPTDAT--LVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG----  129 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~--~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----  129 (288)
                      .+......+..-+|+|++..  ++++...+|  .|++.++.+++..... ...+.....+|+|||+.|+..+. +|    
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            34445556778899995443  333554444  5777788776543332 23445567899999998876553 23    


Q ss_pred             eEEEEeCCCC---ceeEEeccCCCCEEEEEEcCCCCEEEEec-CCCe--EEEEECCc-ccEEEEeeccCCCeEEEEEcCC
Q 023018          130 LVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDST--VWMWNADR-AAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       130 ~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      .+.+|++..+   +.........+.....+|+|+|+.|+..+ .+|.  |+++++.. +.....+..+...+....|+|+
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD  337 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD  337 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC
Confidence            3444676642   33333333333446789999999877665 4564  45555532 2334444444556778899999


Q ss_pred             CCEEEEEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEe--
Q 023018          203 GKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVCCLN--  274 (288)
Q Consensus       203 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~t~~~~~~~--  274 (288)
                      |++|+..+.+   ..|.+||+.+++... +..   ....+....|+|+|+.|+....   ...|+++++.+++.....  
T Consensus       338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~  413 (428)
T PRK01029        338 GKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG  413 (428)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence            9998876543   369999998886543 332   2234567899999988775433   357999999988766554  


Q ss_pred             -cceEEEEEeecc
Q 023018          275 -FQYTCVAYDLDF  286 (288)
Q Consensus       275 -~~~~~~~~~~df  286 (288)
                       ......+|+|-|
T Consensus       414 ~g~~~~p~Ws~~~  426 (428)
T PRK01029        414 SGEKRFPSWGAFP  426 (428)
T ss_pred             CCcccCceecCCC
Confidence             234567777655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=2.2e-14  Score=122.66  Aligned_cols=221  Identities=18%  Similarity=0.215  Sum_probs=148.1

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCC--e
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG--L  130 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg--~  130 (288)
                      .+.+..+...+...+|+| +++.|+.+...   ..|++|++.+++.... ..+...+.+++|+|+++.|+. .+.++  .
T Consensus       182 ~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       182 PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            455556777899999999 66666655433   4799999988765433 335556677999999997764 44444  5


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      |++|++.+++... +..+........|+|+++.|+..+. .+  .|+++++.+++.. .+..+......+.|+|++++|+
T Consensus       260 i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       260 IYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             EEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEE
Confidence            8899988775433 3334444556799999998876654 33  6888898776643 3443455677889999999999


Q ss_pred             EEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEecceEEEE
Q 023018          208 TGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNFQYTCVA  281 (288)
Q Consensus       208 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~~~~~~~  281 (288)
                      .++.++   .|.+||+.++.. ..+...    .......|+|+++.|+..+.++   .+++.+. +|+....+.....-+
T Consensus       338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~  411 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGGGE-RVLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDV  411 (417)
T ss_pred             EEEccCCceEEEEEeCCCCCe-EEccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCc
Confidence            888776   799999987543 333321    1234568999999888776654   4556554 455555553334445


Q ss_pred             Eeeccc
Q 023018          282 YDLDFV  287 (288)
Q Consensus       282 ~~~df~  287 (288)
                      .+|+|+
T Consensus       412 ~~~~ws  417 (417)
T TIGR02800       412 REPAWS  417 (417)
T ss_pred             CCCCCC
Confidence            566653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=2.2e-17  Score=141.36  Aligned_cols=211  Identities=23%  Similarity=0.332  Sum_probs=162.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .......+||.+.|+.++.+. +..++|+++.|..|++|.+..+.++..+.+|.+.|++++|+|-.    +.+.||++++
T Consensus       222 ~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~  296 (1113)
T KOG0644|consen  222 ARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI  296 (1113)
T ss_pred             hhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence            456678899999999999998 77899999999999999999999999999999999999999964    7788999999


Q ss_pred             EeCCCCc--------------eeEEe----------------ccCCCCEEEEEEcCCCCEEEE-----------ecCCCe
Q 023018          134 WDPSSGN--------------LKCTL----------------EGPGGGVEWVSWHPRGHIVLA-----------GSEDST  172 (288)
Q Consensus       134 ~d~~~~~--------------~~~~~----------------~~~~~~i~~~~~~~~~~~l~~-----------~~~dg~  172 (288)
                      ||.+-.-              ....+                ....-.+-.++|....-.+++           +-.+..
T Consensus       297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~  376 (1113)
T KOG0644|consen  297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR  376 (1113)
T ss_pred             ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence            9976110              00000                000011222333333323333           334556


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA  251 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (288)
                      +.+|++.++...+.+.+|...+..+.++|-. ....+++.||...|||+..|.+++....   ....+...+|+++|..+
T Consensus       377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~---gh~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI---GHGKLVDGKFSQDGTSI  453 (1113)
T ss_pred             eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec---ccceeeccccCCCCceE
Confidence            8889999999999999999999999999954 4557889999999999999988877764   24557778999999999


Q ss_pred             EEEeCCCcEEEEEcCCCcEEE
Q 023018          252 LSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      +....-|.++|.....++...
T Consensus       454 ~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  454 ALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             ecCCCCCceEEeccCCCcccc
Confidence            888888999998877665544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.1e-15  Score=115.15  Aligned_cols=203  Identities=16%  Similarity=0.258  Sum_probs=139.1

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      ..|| .+|+.++|++ ++..+++++. +..|.|||..++..+......-+.++-+.|+|++.+|+++.-|+..++|....
T Consensus       192 ~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             CCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence            3455 6899999999 5666666654 67899999999887766655667888999999999999999999999997655


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc----cc-----------EEEEee---------ccCCCe
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR----AA-----------YLNMFS---------GHGSSV  194 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~-----------~~~~~~---------~~~~~i  194 (288)
                      ...........+.|...+|+|.|++|+.++. |.-++|.+.-    +.           ++..+.         .-.+.+
T Consensus       270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgea  348 (445)
T KOG2139|consen  270 SWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEA  348 (445)
T ss_pred             cceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcc
Confidence            4433333344558999999999997776655 4444444321    00           111111         124678


Q ss_pred             EEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCceeEEEc-CCCccccCeEEEEEcC---CCCEEEEEeCCCcEEE
Q 023018          195 TCGDFTPDGKTICTGSDDA--------TLRVWNPKSGENIHVIR-GHPYHTEGLTCLTISA---DSTLALSGSKDGSVHM  262 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i  262 (288)
                      .+++|.|.|.+|++.-..+        .|.+||.+....+.... +.. .......++|+|   ++.+|..+=+.|.+.-
T Consensus       349 q~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i-~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  349 QCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMI-GGEYPAYISFGPLKNEGRLLSIAWSTGRIQR  427 (445)
T ss_pred             ceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccc-cCCCCceEEeeecccCCcEEEEEeccCceEe
Confidence            9999999999999876544        36788887655444331 211 222345567776   5667766666777777


Q ss_pred             EEcC
Q 023018          263 VNIT  266 (288)
Q Consensus       263 wd~~  266 (288)
                      |++.
T Consensus       428 ypl~  431 (445)
T KOG2139|consen  428 YPLT  431 (445)
T ss_pred             eeeE
Confidence            7653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1e-15  Score=134.42  Aligned_cols=199  Identities=21%  Similarity=0.386  Sum_probs=150.4

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCc---ee
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGN---LK  142 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~---~~  142 (288)
                      .-+.|..+.+.++++|. -..|+|||....+.+..+. +....|+++.-+ ..|+.|++|..||.|++||.+...   .+
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred             eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence            34567776676666654 5899999999877777665 344566766554 356899999999999999987543   45


Q ss_pred             EEeccCCCC--EEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE--Eeecc---CCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          143 CTLEGPGGG--VEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN--MFSGH---GSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       143 ~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~---~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ...+.|...  |..+.+.++|- .|++|+.+|.|++||+|......  .+..|   ++..+++..+++...+++|+. +.
T Consensus      1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred             eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence            666777776  99999999766 59999999999999999842222  22222   235899999999999999998 99


Q ss_pred             EEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          215 LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      |.||++. |+.+..+...+    .....+.+++|+|..-+|++|+.|..|.||....++
T Consensus      1327 ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            9999986 44444443211    134567999999998899999999999999877654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=2.3e-15  Score=123.41  Aligned_cols=193  Identities=21%  Similarity=0.326  Sum_probs=139.4

Q ss_pred             CeEEEEEccCCeeeE------eeccccCcEEEEEEe-----cCCCEEEEEeCCCeEEEEeCCCCceeEEec----cCCCC
Q 023018           87 DKGFFWRINQGDWAS------EIQGHKDSVSSLAFS-----MDGQLLASGGLDGLVQIWDPSSGNLKCTLE----GPGGG  151 (288)
Q Consensus        87 g~i~iw~~~~~~~~~------~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~  151 (288)
                      ..+++|+++.+..+.      .+.+ ..+ +|-.|+     |.+--+++|-.-|.|.+.|....+..+.+.    .....
T Consensus       144 ~~lyv~~~~g~~~~~~pi~k~~y~g-t~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~kts  221 (636)
T KOG2394|consen  144 RELYVYSYRGAADLSKPIDKREYKG-TSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSS  221 (636)
T ss_pred             CeEEEEEccCcchhccchhhhcccC-CCC-ceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccc
Confidence            468888887432111      1221 222 333442     455568888888999999877643322221    12367


Q ss_pred             EEEEEEcCC-CCEEEEecCCCeEEEEECCc--------------c--------------cEEEEeeccCCCeEEEEEcCC
Q 023018          152 VEWVSWHPR-GHIVLAGSEDSTVWMWNADR--------------A--------------AYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       152 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~--------------~--------------~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      ++++.|-|. ...++++-.+|.+++||..-              +              .++..+....+.|...+|+||
T Consensus       222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D  301 (636)
T KOG2394|consen  222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD  301 (636)
T ss_pred             eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence            999999994 44777777889999997531              1              112222233557889999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceE
Q 023018          203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYT  278 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~  278 (288)
                      |++||+.+.||.+||||..+.+++..+..   .-+...|++|+|||++|++|++|.-|.||.+..+++++.-    ..+.
T Consensus       302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  302 GKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             CceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999998777666655   5678999999999999999999999999999999999875    4566


Q ss_pred             EEEEee
Q 023018          279 CVAYDL  284 (288)
Q Consensus       279 ~~~~~~  284 (288)
                      .++|.|
T Consensus       379 ~VaFDp  384 (636)
T KOG2394|consen  379 VVAFDP  384 (636)
T ss_pred             eEeecc
Confidence            777775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=6e-14  Score=120.24  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=135.1

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCC--e
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGG-GD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDG--L  130 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg--~  130 (288)
                      .+.+..+...+...+|+| +++.|+..+ .+  ..|.+|++.+++... +....+.+....|+|+|++|+. ...+|  .
T Consensus       191 ~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        191 AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            455566778899999999 555554443 32  368999998876543 3323445567899999998774 44444  6


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      |++||+.+++.. .+..+........|+|+++.|+..+. +  ..|+++++.+++.... ...........|+|+|++|+
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEE
Confidence            888899887654 34444455667899999998776654 3  3688888877764332 22223344578999999998


Q ss_pred             EEeCC-C--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCc
Q 023018          208 TGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGK  269 (288)
Q Consensus       208 ~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~  269 (288)
                      ..+.. +  .|.+||+.+++. ..+...    .......|+|+|+.|+..+.+   ..|+++++..+.
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~-~~lt~~----~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~  409 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSV-RILTDT----SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV  409 (430)
T ss_pred             EEEccCCceEEEEEECCCCCE-EEccCC----CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            77643 3  588999988764 333321    112245899999988776543   357788875443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.7e-14  Score=123.15  Aligned_cols=192  Identities=22%  Similarity=0.273  Sum_probs=127.1

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      ..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+..   ..|.+||+.+++... +....+.+...+|+|+|+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            357777764 44444455577889999999999988877642   469999999886543 3333355678999999998


Q ss_pred             EEE-ecCCCeEEEE--ECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCceeEEEcCCCcccc
Q 023018          164 VLA-GSEDSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVW--NPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       164 l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~  237 (288)
                      |+. .+.+|...+|  |+..+. ...+..+........|+|+|++|+..+. +|...||  ++.++.......    ...
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~----~g~  328 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF----TGS  328 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec----CCC
Confidence            774 5667765555  555444 4445545555677889999998876654 4555555  555544332221    122


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                      ......|+|+|++|+..+.++   .|++||+.+++......  ....+.|+||
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spd  381 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPN  381 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCC
Confidence            234578999999998776554   69999999887654432  2345566655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=6.2e-15  Score=126.15  Aligned_cols=177  Identities=18%  Similarity=0.258  Sum_probs=131.1

Q ss_pred             CeEEEEEccCC-eeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce--eEE----eccCCCCEEEEEEc
Q 023018           87 DKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL--KCT----LEGPGGGVEWVSWH  158 (288)
Q Consensus        87 g~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~----~~~~~~~i~~~~~~  158 (288)
                      +.+.||++... .+...+. ....|++++|+|.. .+++.|+.+|.|.+||++.+..  ...    ...|..++..+.|-
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 4444444 56789999999954 4778888999999999987765  222    23577889999997


Q ss_pred             CCC--CEEEEecCCCeEEEEECCcccE-----------------------------------------------------
Q 023018          159 PRG--HIVLAGSEDSTVWMWNADRAAY-----------------------------------------------------  183 (288)
Q Consensus       159 ~~~--~~l~~~~~dg~i~i~d~~~~~~-----------------------------------------------------  183 (288)
                      .+.  .-|++++.||.|..|+++.-..                                                     
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            744  4499999999999998752110                                                     


Q ss_pred             ----------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcC-CCCEE
Q 023018          184 ----------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISA-DSTLA  251 (288)
Q Consensus       184 ----------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  251 (288)
                                ...+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..   +...|++++||| ....+
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---~~~~v~~vaWSptrpavF  457 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---SPDYVTDVAWSPTRPAVF  457 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---ccceeeeeEEcCcCceEE
Confidence                      01122467789999999976666555559999999876 4444444443   556699999999 55678


Q ss_pred             EEEeCCCcEEEEEcCC
Q 023018          252 LSGSKDGSVHMVNITT  267 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~t  267 (288)
                      +++..+|.|.+||+..
T Consensus       458 ~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  458 ATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             EEEcCCCceehhhhhc
Confidence            8888899999999964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=6.1e-14  Score=119.63  Aligned_cols=191  Identities=15%  Similarity=0.083  Sum_probs=130.3

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  164 (288)
                      .|.+||...... ..+..+...+.+.+|+|+|+.|+..+   .+..|.+|++.+++..... ...+....+.|+|+|+.|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence            688888875443 33444667899999999999888654   2457999999887643322 223335578999999988


Q ss_pred             EEe-cCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEEcCCCccccC
Q 023018          165 LAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       165 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      +.. +.+|  .|++||+.+++... +..+...+....|+|+|+.|+..+.. +  .|+++|+.++... .+..   ....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCCC
Confidence            765 4444  59999998876544 33344567889999999998777654 3  4566677766543 3322   2334


Q ss_pred             eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          239 LTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                      .....|+|+|++|+..+.+   ..|++||+.+++......  ....+.|+||
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpD  384 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPN  384 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCC
Confidence            5578899999988776543   358899999887654332  2234566665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3e-15  Score=118.47  Aligned_cols=167  Identities=14%  Similarity=0.222  Sum_probs=137.0

Q ss_pred             eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC------CCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEE
Q 023018          102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS------SGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVW  174 (288)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~  174 (288)
                      .+.+|.+.|+++.|+.++++|++|+.|..+++|++.      +.+++..... |.+.|.|++|....+++++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            456799999999999999999999999999999975      3455555443 458899999999999999999999999


Q ss_pred             EEECCcccEEEEeec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcC-CCCE
Q 023018          175 MWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISA-DSTL  250 (288)
Q Consensus       175 i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~  250 (288)
                      ..|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+.... ......++-|+| ...+
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNFYTAEFHPETPAL  209 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC-CCccceeeeecCCCcee
Confidence            999999988877752  23489999999998999999999999999998765 333332221 456678889999 5678


Q ss_pred             EEEEeCCCcEEEEEcCCCc
Q 023018          251 ALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t~~  269 (288)
                      |++.+..+-+-+||.+..+
T Consensus       210 i~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             EEeccccCCCCceeecccc
Confidence            8889999999999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2e-14  Score=122.98  Aligned_cols=192  Identities=17%  Similarity=0.151  Sum_probs=131.8

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      ..|.+||.... ....+..+...+.+.+|+|+++.|+.++.   ...|++|++.+++.... ....+....+.|+|+|+.
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence            35888998644 34445557778999999999998888763   34799999988765433 333444567899999997


Q ss_pred             EEE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018          164 VLA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       164 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      |+. .+.+|  .|++||+.+++. ..+..+.......+|+|+|++|+.++. +|  .|+++++.+++......    ...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~----~g~  336 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF----QGN  336 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec----CCC
Confidence            764 44444  699999988764 344445555577899999999887764 44  47777887765433322    223


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                      .....+|+|+|+.|+..+.++   .|++|++.+++......  ....+.|+||
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spd  389 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPN  389 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCC
Confidence            344689999999988765433   69999999887664332  2234455554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=1.9e-13  Score=105.48  Aligned_cols=198  Identities=17%  Similarity=0.258  Sum_probs=137.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeeeEeeccc--cCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGH--KDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSG  139 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~  139 (288)
                      ..+|.++.+.+ +  .+++.- .+.|+||.+. +.+.++.+...  ...+.+++-..+..+||.= -.-|.|.|-|+...
T Consensus        94 ~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   94 NSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            46788888876 3  344444 3789999998 44555554422  2334444433344455543 35699999999876


Q ss_pred             ce--eEEeccCCCCEEEEEEcCCCCEEEEecCCCe-EEEEECCcccEEEEeec--cCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          140 NL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST-VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       140 ~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      +.  ...+..|.+.|.|++.+.+|..+|+++..|+ |+|||..++.++..++.  ....|.+|+|+|+..+|++++..|+
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT  249 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT  249 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence            65  4678899999999999999999999999998 79999999999998874  3457999999999999999999999


Q ss_pred             EEEEeCCCCceeEE-----------EcC----------CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          215 LRVWNPKSGENIHV-----------IRG----------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       215 i~i~d~~~~~~~~~-----------~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      |.||.++.......           +..          .+...++..-++|..+.+.++..+.||..+-+-+
T Consensus       250 lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  250 LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF  321 (346)
T ss_pred             EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence            99998864321111           000          0012233445566666455666667776554443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=4.3e-13  Score=111.45  Aligned_cols=191  Identities=18%  Similarity=0.194  Sum_probs=139.4

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEc
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH  158 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  158 (288)
                      ++++-..+|.|.+.|..+.+.+.++......-..+.|+|+++++++++.||.|.++|+.+++.+.+++.... ...++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVS   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEc
Confidence            345666789999999999999999985544445578999999999999999999999999999999886554 7889999


Q ss_pred             CCCCEEEEec-CCCeEEEEECCcccEEEEeecc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeE--
Q 023018          159 PRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH--  227 (288)
Q Consensus       159 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~--  227 (288)
                      ++|+++++++ ..+.+.++|.++.++++.+...       ...+..+..+|....++..-. .+.|.+.|......+.  
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            9999988776 5799999999999988887642       346778888888886655554 5888888877654332  


Q ss_pred             EEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe
Q 023018          228 VIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.    .........|+|++++++++ .....|-++|+.+++.+..+
T Consensus       167 ~i~----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  167 TIK----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eec----ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            332    34567788999999987664 55779999999999888765

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=6.5e-13  Score=110.38  Aligned_cols=217  Identities=14%  Similarity=0.143  Sum_probs=141.4

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  132 (288)
                      .+.+..+......-..+.|+| +++++++++.||.|.++|+.+.+.+.++... .....++++++|+++++++ ..+.+.
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred             CeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence            455666665544434577898 7788888899999999999999999998754 4557899999999988775 689999


Q ss_pred             EEeCCCCceeEEeccC---------------------------------------------------CCCEEEEEEcCCC
Q 023018          133 IWDPSSGNLKCTLEGP---------------------------------------------------GGGVEWVSWHPRG  161 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~---------------------------------------------------~~~i~~~~~~~~~  161 (288)
                      ++|..+.+.++.+...                                                   ........|+|++
T Consensus       104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence            9999887766544211                                                   0123445678888


Q ss_pred             CEEEEe-cCCCeEEEEECCcccEEEEe-----------------------------------------------------
Q 023018          162 HIVLAG-SEDSTVWMWNADRAAYLNMF-----------------------------------------------------  187 (288)
Q Consensus       162 ~~l~~~-~~dg~i~i~d~~~~~~~~~~-----------------------------------------------------  187 (288)
                      ++++++ .....|.++|.++++.+..+                                                     
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            876554 44567777777665443221                                                     


Q ss_pred             --eccCCCeEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--Cc
Q 023018          188 --SGHGSSVTCGDFTPDGKTICTG----SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GS  259 (288)
Q Consensus       188 --~~~~~~i~~~~~~p~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~  259 (288)
                        .....+ .-+..+|+++++++.    ...+.|.++|.++.+....+...  ....+..+.|+++|+.+..+..+  |.
T Consensus       264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~--~~~~~~h~ef~~dG~~v~vS~~~~~~~  340 (369)
T PF02239_consen  264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG--PGKRVVHMEFNPDGKEVWVSVWDGNGA  340 (369)
T ss_dssp             EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH--HT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred             EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc--CCCcEeccEECCCCCEEEEEEecCCCE
Confidence              111222 456778999999887    44578999999998777776531  22348899999999977665443  46


Q ss_pred             EEEEEcCCCcEEEEec
Q 023018          260 VHMVNITTGKVCCLNF  275 (288)
Q Consensus       260 i~iwd~~t~~~~~~~~  275 (288)
                      |.+||..|.+.++.+.
T Consensus       341 i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  341 IVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCcEEEEEEE
Confidence            9999999999998874

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.6e-13  Score=116.30  Aligned_cols=207  Identities=19%  Similarity=0.237  Sum_probs=132.2

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEE-EeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE-EeCCCe--E
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVAT-GGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS-GGLDGL--V  131 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--i  131 (288)
                      +.+..+...+...+|+| +++.|+. ...++  .|++|++.+++... +....+......|+|+|+.|+. .+.+|.  |
T Consensus       211 ~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence            34555667888999999 5555544 43333  58888988776432 2222333457899999997765 455664  7


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      +++|+.+++.. .+..+.......+|+|+++.|+..+. +  ..|+++|+.+++.... ..........+|+|+|++|+.
T Consensus       289 y~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~  366 (448)
T PRK04792        289 YVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIM  366 (448)
T ss_pred             EEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEE
Confidence            78888877644 34444445677899999998876653 3  3577788877764332 222223345689999999877


Q ss_pred             EeCC-C--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcEEEEe
Q 023018          209 GSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVCCLN  274 (288)
Q Consensus       209 ~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~t~~~~~~~  274 (288)
                      .+.+ +  .|.++|+.++... .+....    ......|+|+|+.|+..+. +|  .++++++ +|+....+
T Consensus       367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l  432 (448)
T PRK04792        367 VNRTNGKFNIARQDLETGAMQ-VLTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL  432 (448)
T ss_pred             EEecCCceEEEEEECCCCCeE-EccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            6553 3  4666788877643 333211    1123479999988776554 33  3777887 55555555

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.1e-13  Score=114.79  Aligned_cols=187  Identities=17%  Similarity=0.239  Sum_probs=156.1

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEe------c--------------CCCEEEEEeCCCeEE
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFS------M--------------DGQLLASGGLDGLVQ  132 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~i~  132 (288)
                      ...++|....||.+++|+..+++....+..   ..+..++..|.      |              +...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            667899999999999999999887776643   23445555553      2              233678888899999


Q ss_pred             EEeCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          133 IWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +|+...++....+.  .|.+.+.++.++.+-..|.+++.|+.+..|+......++.++.....+.+++.+|++..|++++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as  163 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS  163 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence            99999999888776  5888999999999999999999999999999999999999998889999999999999999887


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----STLALSG-SKDGSVHMVNITT  267 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~t  267 (288)
                        +.|.+||+.+++.+..|.+   |.++|+++.|...     |.+++++ ..+..|.+|-+..
T Consensus       164 --~~ik~~~~~~kevv~~ftg---h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 --RQIKVLDIETKEVVITFTG---HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --ceEEEEEccCceEEEEecC---CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              6899999999999999998   8899999999876     5665544 4456677776654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.6e-14  Score=119.40  Aligned_cols=194  Identities=18%  Similarity=0.337  Sum_probs=153.2

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      ..++++...-.+++.|+ ...|+-.++..|+.+..+....+.++++..++-..+|++|+.+|.|-.||.+.......+..
T Consensus       137 RDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            44555543444554444 46788899999999999988889999999999988999999999999999988766555532


Q ss_pred             ------CCC-----CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCC--CCEEEEEeCCC
Q 023018          148 ------PGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPD--GKTICTGSDDA  213 (288)
Q Consensus       148 ------~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~--~~~l~~~~~dg  213 (288)
                            +.+     .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-. ....+|..+.|.+.  +..|++. ...
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~  294 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKR  294 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chH
Confidence                  222     49999999999999999999999999999988765433 34568999999885  3445554 456


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .++|||-.+|+....+.    ....+..+|+-|++-+++++-.++.+..|=+..
T Consensus       295 ~~kiWd~~~Gk~~asiE----pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  295 ILKIWDECTGKPMASIE----PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             HhhhcccccCCceeecc----ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            78999999999888777    456689999999998999998888777765543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=1.8e-13  Score=106.21  Aligned_cols=210  Identities=17%  Similarity=0.204  Sum_probs=147.4

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----------
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----------  128 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  128 (288)
                      .+...+.++..++|+|++..+|.+...+-+|.+|.+.+.+... ++-.+..+..++|+|+|++.+.+++-          
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            4455677899999999666888888999999999998866443 33234556888999999987776542          


Q ss_pred             --------------------------CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018          129 --------------------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (288)
Q Consensus       129 --------------------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (288)
                                                ..+.+||.--.-.+..+. ..-++..++|+|.+++|++|+.|+.+++.+--+.+
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence                                      123333321111111122 23468999999999999999999999887643222


Q ss_pred             EEE------------------------------------------------------------Eee------ccCCCeEE
Q 023018          183 YLN------------------------------------------------------------MFS------GHGSSVTC  196 (288)
Q Consensus       183 ~~~------------------------------------------------------------~~~------~~~~~i~~  196 (288)
                      +..                                                            .++      .....+..
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~  323 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK  323 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence            110                                                            001      12345677


Q ss_pred             EEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          197 GDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|++|..++++-..  -..+-+||++..+....+.    ...+|....|+|....|+.+....++++|......++...
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP  399 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP  399 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh----hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence            899999999988764  2468899998776655554    5678999999998888888888888999998876666554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=3e-14  Score=125.04  Aligned_cols=188  Identities=21%  Similarity=0.358  Sum_probs=153.1

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcE-EE---EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV-SS---LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG  151 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i-~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  151 (288)
                      ....++.++.+..+.+|+...+.....+....... .+   +-++++.-++++|+.-+.|.+|+.........+.+|.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            45677788888999999998877766665332211 11   223445558999999999999998754444468899999


Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                      |.++.|+-+|+++++.+.|.++++|++.+.+... ...+|...++.++|.|.  ++++++.|-+.++|+.. +..+..+.
T Consensus       178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~  254 (967)
T KOG0974|consen  178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD  254 (967)
T ss_pred             eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence            9999999999999999999999999999987665 66789999999999988  99999999999999754 55555666


Q ss_pred             CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      +|  ....+..++..++...+++++.||.+++|++.+.
T Consensus       255 ~h--~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  255 EH--SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hh--hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            65  4567999999999999999999999999998753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.62  E-value=5.2e-13  Score=114.17  Aligned_cols=192  Identities=17%  Similarity=0.196  Sum_probs=131.7

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      ..|.++|..... ...+..+...+...+|+|++++|+.++..   ..|++|++.+++.... ..+.+.+.+++|+|+++.
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence            357788875433 34454566678899999999998887643   4799999988865433 334455677999999987


Q ss_pred             EEEe-cCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEEcCCCcccc
Q 023018          164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       164 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      |+.. +.++  .|++|++.++... .+..+........|+|++++|+.++.. +  .|+++|+.+++... +..   +..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---RGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCC
Confidence            7654 4443  5999999877543 344444445677899999988766543 3  68888988766433 332   334


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                      ......|+|++++|+.++.++   .|.+||+.++.......  ....+.|+||
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spd  375 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPN  375 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCC
Confidence            566789999999998887765   89999998876543331  2233455554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=1.9e-11  Score=101.60  Aligned_cols=217  Identities=16%  Similarity=0.309  Sum_probs=141.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeeeEe---ec----------cccCcEEEEEEecCCCEEEEEe-C
Q 023018           64 SDEVYSVACSPTDATLVATG-GGDDKGFFWRINQ-GDWASE---IQ----------GHKDSVSSLAFSMDGQLLASGG-L  127 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~-~  127 (288)
                      ...-..++++| ++++|+++ ..+|.|.++++.. +.....   +.          ......+++.|+|+++++++.. .
T Consensus        86 g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            34456789999 45555554 5689999999987 333222   11          1234678999999999887764 3


Q ss_pred             CCeEEEEeCCCCc--ee--EEec-cCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECC--ccc--EEEEeecc------C
Q 023018          128 DGLVQIWDPSSGN--LK--CTLE-GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNAD--RAA--YLNMFSGH------G  191 (288)
Q Consensus       128 dg~i~i~d~~~~~--~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~------~  191 (288)
                      ...|.+|++....  +.  ..+. ......+.+.|+|+++++++.. .++.|.++++.  ++.  .+..+...      .
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            4589999987654  32  1222 3456789999999999776654 57889999887  332  23332211      1


Q ss_pred             CCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC--CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEc--
Q 023018          192 SSVTCGDFTPDGKTICTGSD-DATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNI--  265 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~--  265 (288)
                      .....|+++|+|++|+++.. .+.|.+|++.  ++. +..+..........+.+.++|+|++|++++. ++.|.+|++  
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            25788999999999988764 6689999983  333 2222222113445899999999999998774 678999876  


Q ss_pred             CCCcEEEEe-----cceEEEEE
Q 023018          266 TTGKVCCLN-----FQYTCVAY  282 (288)
Q Consensus       266 ~t~~~~~~~-----~~~~~~~~  282 (288)
                      .+|++...-     ....|+.|
T Consensus       324 ~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  324 DTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCcEEEecccccCCCCEEEeC
Confidence            577655443     45566654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=3.7e-13  Score=102.87  Aligned_cols=219  Identities=15%  Similarity=0.160  Sum_probs=158.8

Q ss_pred             CCCEEEEEEcC--CCCc-EEEEEeCCCeEEEEEccCCeeeEeecccc------CcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           64 SDEVYSVACSP--TDAT-LVATGGGDDKGFFWRINQGDWASEIQGHK------DSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        64 ~~~v~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .+.+..+.|..  .++. .++-+...|.|.++..........+.+-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            45577777764  2344 56677788999999887655444443321      124578889989999999999999966


Q ss_pred             eCCCCceeE--EeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCc-ccEEEE-eeccCCCeEEEEEcC-CCCEEEE
Q 023018          135 DPSSGNLKC--TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-AAYLNM-FSGHGSSVTCGDFTP-DGKTICT  208 (288)
Q Consensus       135 d~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~i~~~~~~p-~~~~l~~  208 (288)
                      +........  .++.|.-.+....|+. +.+++++|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+| .+.++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            665554443  6788998999999987 456899999999999999994 344433 556889999999887 6789999


Q ss_pred             EeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-----EEEEecceEEEE
Q 023018          209 GSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGK-----VCCLNFQYTCVA  281 (288)
Q Consensus       209 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~-----~~~~~~~~~~~~  281 (288)
                      |+.|-.|++||.++ ++++..-.    ..++|+.+.++|. ...|++++.-.-.+|.+...+.     .......+.+++
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~----v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~  304 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK----VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC  304 (339)
T ss_pred             eccccceeeeehhcccCccccCc----cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee
Confidence            99999999999994 45544333    4588999999993 2333444444457777776543     333447788888


Q ss_pred             Eeecc
Q 023018          282 YDLDF  286 (288)
Q Consensus       282 ~~~df  286 (288)
                      |..||
T Consensus       305 YG~DW  309 (339)
T KOG0280|consen  305 YGGDW  309 (339)
T ss_pred             ecccc
Confidence            88887

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=4.8e-15  Score=120.15  Aligned_cols=213  Identities=21%  Similarity=0.312  Sum_probs=153.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--------------------------------
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--------------------------------  102 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------  102 (288)
                      .....|.+|.+.|..+.|+. .+..+++|+.|..|.+||+..++.+..                                
T Consensus       133 ~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            44667788999999999998 888999999999999999865443222                                


Q ss_pred             ----------------eccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEec---cCCC---CEEEEEEcC
Q 023018          103 ----------------IQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLE---GPGG---GVEWVSWHP  159 (288)
Q Consensus       103 ----------------~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~i~~~~~~~  159 (288)
                                      +..|.++|.-++.-|... .|.+++.|+.+.-+|++.+.....+.   .+..   ....++..|
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence                            234666777777776554 46777778888877877664333222   1222   567888888


Q ss_pred             CC-CEEEEecCCCeEEEEECCcccE------EEE----------------------------------------------
Q 023018          160 RG-HIVLAGSEDSTVWMWNADRAAY------LNM----------------------------------------------  186 (288)
Q Consensus       160 ~~-~~l~~~~~dg~i~i~d~~~~~~------~~~----------------------------------------------  186 (288)
                      .. ..+++++.|-.+++||.+.-..      +..                                              
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            44 4888899999999998764211      010                                              


Q ss_pred             ---------------eeccCC--CeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018          187 ---------------FSGHGS--SVTCGD-FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       187 ---------------~~~~~~--~i~~~~-~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                                     +++|..  .|..+- |-|...|+++|+.-|.|.||+-.+++.++.+.+.   ..-|+||.-+|.-
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD---r~VVNCLEpHP~~  448 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD---RHVVNCLEPHPHL  448 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc---cceEeccCCCCCC
Confidence                           222221  122222 3455678999999999999999999988888773   3478999999988


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEE
Q 023018          249 TLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      .+|++++-|..|+||...+.+..
T Consensus       449 PvLAsSGid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWTPLTAERA  471 (559)
T ss_pred             chhhccCCccceeeecCCccccc
Confidence            89999999999999998665544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=6.7e-14  Score=108.57  Aligned_cols=196  Identities=18%  Similarity=0.219  Sum_probs=142.9

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeEEecc
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      -++|+| +++++|+++.- .+.|-|..+.+..+.+.. -..|..+.|..+.-+++++ ..++.|.+|++...+-...+..
T Consensus        13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            367999 88999998864 888999888776665553 4567778999888766655 6788999999999988888888


Q ss_pred             CCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC-------------
Q 023018          148 PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-------------  213 (288)
Q Consensus       148 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg-------------  213 (288)
                      ...++.+++|+|+|+.| .+...+-.|.+|.+.+.+.... +-.+..+..++|+|+|++.+.++.-.             
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            88899999999999755 4556688999999987654432 22344567788899888876664321             


Q ss_pred             -----------------------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          214 -----------------------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       214 -----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                                             .+.+||.--...+....    ..-++..+.|+|.+++|++|+.|+.+++.+--|-+.
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                   23333322111111221    235688899999999999999999999977666554


Q ss_pred             EE
Q 023018          271 CC  272 (288)
Q Consensus       271 ~~  272 (288)
                      ..
T Consensus       245 f~  246 (447)
T KOG4497|consen  245 FG  246 (447)
T ss_pred             hh
Confidence            43

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.1e-12  Score=109.74  Aligned_cols=191  Identities=16%  Similarity=0.121  Sum_probs=128.0

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  164 (288)
                      .|.++|...... ..+..+...+....|+|+|++|+..+.+   ..|.+|++.+++... +....+......|+|+|+.|
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            477777765443 4444567788999999999988776533   469999998886543 33333445678999999987


Q ss_pred             EE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccC
Q 023018          165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      +. ...+|  .|++||+.++... .+..+........|+|+|+.|+..+. +|  .|+++++.+++.......    ...
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~----~~~  332 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV----GNY  332 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC----CCC
Confidence            74 44444  6889999887643 34445555667889999998876654 33  588888887764333221    122


Q ss_pred             eEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                      .....|+|+|+.|+..+.. +  .|.+||+.+++......  ......|+||
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spd  384 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPN  384 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCC
Confidence            3456899999998876543 3  58899999887644332  2223455554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.56  E-value=3.6e-13  Score=120.27  Aligned_cols=177  Identities=18%  Similarity=0.240  Sum_probs=133.8

Q ss_pred             CeeeEeeccccCcEEEEEEecCC-CEEEEEeCCCeEEEEeCCCC-------ceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018           97 GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  168 (288)
                      |..+..+..|...+..++.++.. .+|++|+.||+|++|+.+.-       +...++....+++.++.+.+.+..+|+++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            56777788899888888888654 89999999999999998642       23334444567899999999999999999


Q ss_pred             CCCeEEEEECCcc--c-----EEEEeeccC-CC-eEEEEEcC-CCC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018          169 EDSTVWMWNADRA--A-----YLNMFSGHG-SS-VTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       169 ~dg~i~i~d~~~~--~-----~~~~~~~~~-~~-i~~~~~~p-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      .||.|.+.++...  .     +.+....+. +. +..-++.. .+. .|+.+..-+.|..||+++......++... ..+
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-RHG 1196 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-ccc
Confidence            9999999998652  1     112222222 22 33333433 334 67888889999999999877666665433 446


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .|++++.+|.+++++.|+..|.+.+||++=+.++..-
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence            7999999999999999999999999999988777654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=9.8e-12  Score=106.61  Aligned_cols=178  Identities=17%  Similarity=0.153  Sum_probs=119.2

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-C--CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-D--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  164 (288)
                      .|.++|...... ..+..+...+.+..|+|+|++|+..+. +  ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence            566777655433 344456778889999999998887653 2  3688999988765332 2223334578999999977


Q ss_pred             EE-ecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccC
Q 023018          165 LA-GSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       165 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      +. .+.+|  .|+++|+.+++. ..+..+........|+|++++|+..+. ++  .|+++|+.+++......    ....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----~g~~  351 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF----EGEQ  351 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec----CCCC
Confidence            65 45555  488889887764 344445555677899999998876653 33  57777887776543322    1122


Q ss_pred             eEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcEEE
Q 023018          239 LTCLTISADSTLALSGSK-DG--SVHMVNITTGKVCC  272 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~t~~~~~  272 (288)
                      ....+|+|+|++|+..+. ++  .|.++|+.+++...
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~  388 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV  388 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence            345689999998877654 33  56778888887543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=8.2e-14  Score=128.35  Aligned_cols=195  Identities=12%  Similarity=0.243  Sum_probs=158.6

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      +.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..+.. -...|+.+.|+.+|+.+.++..||.+.+|.+. .
T Consensus      2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            334567888888884 45666999999999999999888877652 33789999999999999999999999999876 6


Q ss_pred             ceeEEeccCCCCEEEEEEcCCCCEEEEec---CCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      +.....+.|........|-.  ..+++++   .++.+.+||.--.   .++.  +.|.+.++++++.|..+.|++|+.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            67777788888888888864  5667664   4688999997532   2334  67999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .|++||++..+.++.++.            +. ...++++|+..|.|+||++..-..+.++
T Consensus      2359 ~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            999999998777666552            34 4568899999999999999988777665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=1.9e-10  Score=93.85  Aligned_cols=198  Identities=12%  Similarity=0.091  Sum_probs=140.8

Q ss_pred             EcCCCCcEEEEEe---------CCCeEEEEEccCCeeeEeeccccC-------cEEEEEEecCCCEEEEEe-C-CCeEEE
Q 023018           72 CSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFSMDGQLLASGG-L-DGLVQI  133 (288)
Q Consensus        72 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~-dg~i~i  133 (288)
                      ++|++..+.++.+         .+..|.+||..+.+.+..+.....       .-..++++|+|++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8995554555555         588999999999999888763222       224788999999988776 3 689999


Q ss_pred             EeCCCCceeEEeccCCC-------------------------------CEEEE--------------EEcC-CCCEEEEe
Q 023018          134 WDPSSGNLKCTLEGPGG-------------------------------GVEWV--------------SWHP-RGHIVLAG  167 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~-------------------------------~i~~~--------------~~~~-~~~~l~~~  167 (288)
                      .|+.+++.+..+..+..                               .....              .|.+ +++++++.
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            99998877665432110                               01111              1223 66666666


Q ss_pred             cCCCeEEEEECCcc-----cEEEEeec-------cCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCce
Q 023018          168 SEDSTVWMWNADRA-----AYLNMFSG-------HGSSVTCGDFTPDGKTICTGS----------DDATLRVWNPKSGEN  225 (288)
Q Consensus       168 ~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~p~~~~l~~~~----------~dg~i~i~d~~~~~~  225 (288)
                      .. |.|.+.|+...     .....+..       ....+..++++|+++++++..          ..+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            66 99999995432     22222221       123344599999999988843          124799999999999


Q ss_pred             eEEEcCCCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          226 IHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..+.    -...+..++++||++ +|++.+ .++.|.++|+.+++.++.+
T Consensus       292 i~~i~----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       292 LRKIE----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEe----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            98887    356789999999999 877666 5788999999999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.1e-10  Score=94.33  Aligned_cols=220  Identities=19%  Similarity=0.265  Sum_probs=142.4

Q ss_pred             CCEEEEEEcCCCCcEEEEEeC----CCeEEEEEccCC--e--eeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEe
Q 023018           65 DEVYSVACSPTDATLVATGGG----DDKGFFWRINQG--D--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD  135 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d  135 (288)
                      .....++++| ++.+|++...    .|.|..|.+...  +  .+............++++|++++|+++. .+|.|.+++
T Consensus        37 ~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            3456688999 5666666655    579999998864  3  3333332334456799999999988886 589999999


Q ss_pred             CCCC-ceeEE---ec----------cCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCccc--E--EEEee-ccCCCeE
Q 023018          136 PSSG-NLKCT---LE----------GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA--Y--LNMFS-GHGSSVT  195 (288)
Q Consensus       136 ~~~~-~~~~~---~~----------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~--~--~~~~~-~~~~~i~  195 (288)
                      +... .....   +.          .......++.++|+++++++... ...|++|++....  +  ...+. ......+
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            9873 33222   11          12345889999999998877643 4679999987654  2  12222 3456789


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCC--CCc--eeEEEcCCC---ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEc-
Q 023018          196 CGDFTPDGKTICTGS-DDATLRVWNPK--SGE--NIHVIRGHP---YHTEGLTCLTISADSTLALSGS-KDGSVHMVNI-  265 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~-  265 (288)
                      .+.|+|+++++++.. .++.|.+|++.  ++.  .+..+...+   ........+.++|+|++|+++. ..+.|.+|++ 
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            999999999987665 47789999887  442  222222211   1122578899999999988765 4678999999 


Q ss_pred             -CCCcEEEEe------cceEEEEEeec
Q 023018          266 -TTGKVCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       266 -~t~~~~~~~------~~~~~~~~~~d  285 (288)
                       .+|++....      ...+.++++|+
T Consensus       276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  276 PATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             cCCCceEEEEEEeCCCCCccEEEEeCC
Confidence             344443322      33677777654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=7.1e-14  Score=115.59  Aligned_cols=177  Identities=21%  Similarity=0.361  Sum_probs=135.0

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-------CeeeEeeccccCcEEEEEEecCCCEEEE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (288)
                      ...-.+..+.||+..|.+++--. +.+.+++++.|++|++|.++.       ..+..+++.|+.+|.++.|-.+.+++++
T Consensus       723 ~~~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S  801 (1034)
T KOG4190|consen  723 FDHIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS  801 (1034)
T ss_pred             cceeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee
Confidence            34455677889999999988766 677888999999999999864       3467788899999999999998888877


Q ss_pred             EeCCCeEEEEeCCCCceeEEec--cCCCCEEEEEEcC--CCCEEEEe-cCCCeEEEEECCcccEEEEee-----ccCCCe
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNMFS-----GHGSSV  194 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i  194 (288)
                      +  ||-|++||.-.++.+..+.  ...+.+..+..-+  +..++++| +...+|+++|.+.......++     +...-+
T Consensus       802 c--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  802 C--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             c--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence            6  7889999988777665332  1222233333333  23344444 677899999999876655554     344568


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Q 023018          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG  231 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (288)
                      ++++..|.|+.++++-..|.|.+.|.++|+.+..++.
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            9999999999999999999999999999987765543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=4.5e-12  Score=105.42  Aligned_cols=161  Identities=17%  Similarity=0.210  Sum_probs=131.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeEEecc---CCCCEEEEEEc------C--------------CCCEEEEecCCCeE
Q 023018          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWH------P--------------RGHIVLAGSEDSTV  173 (288)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~------~--------------~~~~l~~~~~dg~i  173 (288)
                      |...++|....||.+++|+...++....|..   -.+...+..|.      |              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456899999999999999999988777653   22344455542      1              22368888899999


Q ss_pred             EEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018          174 WMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA  251 (288)
Q Consensus       174 ~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (288)
                      .+|++..++....+.  .|.+.|.++.++.+-..|++++.|+.+..|+...++.++.+..   ....+.+++.+||+.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcCCCCEE
Confidence            999999998877776  5889999999999888999999999999999999888888776   56778999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEecceEEEEE
Q 023018          252 LSGSKDGSVHMVNITTGKVCCLNFQYTCVAY  282 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~~  282 (288)
                      ++++  +.|++|++.+++.+.++.+|.+++-
T Consensus       160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~  188 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETKEVVITFTGHGSPVR  188 (541)
T ss_pred             Eecc--ceEEEEEccCceEEEEecCCCcceE
Confidence            9886  6899999999999999955444333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=7.9e-13  Score=116.31  Aligned_cols=147  Identities=22%  Similarity=0.357  Sum_probs=126.8

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE-EeccCCC
Q 023018           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG  150 (288)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~  150 (288)
                      +++ +.-++++|+.-+.|.+|+......-..+.+|.+.|.++.|+.+|+++++.+.|.++++|++.+.+... ..-+|..
T Consensus       141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence            344 66788999999999999998544444688999999999999999999999999999999999988766 5567999


Q ss_pred             CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ++..++|+|+  .+++++.|-+.++|+. .+..+..+..|. ..++.++..+....+++++.||.+++|++..
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999998  9999999999999976 455566777765 4789999999888999999999999999753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.47  E-value=3.4e-12  Score=99.72  Aligned_cols=214  Identities=17%  Similarity=0.282  Sum_probs=157.6

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeec-cccCcEEEEEEecCCCEEEEEeCCC
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      .....++.+.||.+.|++...-| ...-+++.+.|.+++||--.+ ++.-..+. ....+++++.+.+....|++|-..|
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             cchhhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence            34556788999999999999998 566677999999999997554 44333332 2356889999999999999999999


Q ss_pred             eEEEEeCC----CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEE------------------------------
Q 023018          130 LVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM------------------------------  175 (288)
Q Consensus       130 ~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i------------------------------  175 (288)
                      ++.-+.+.    .....+....|...+..+-|+....++++.+.|..+.-                              
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv  170 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV  170 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence            99888653    22334444556667777777665556666555443221                              


Q ss_pred             ---------EEC--CcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEE
Q 023018          176 ---------WNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLT  243 (288)
Q Consensus       176 ---------~d~--~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~  243 (288)
                               ..+  ..-.++.++.+|...+++++|.|....|++|..|..+.+||+....- ...+.+   |...|..+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---h~~kV~~l~  247 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---HNDKVQALS  247 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---chhhhhhhh
Confidence                     111  11234566778999999999999999999999999999999864332 223333   778888888


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          244 ISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      ..+.-+.|++++.||.|.+|+++..+
T Consensus       248 ~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  248 YAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhheeeeeccCCCeEEEEecccee
Confidence            88878899999999999999998654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.1e-10  Score=96.18  Aligned_cols=197  Identities=10%  Similarity=0.023  Sum_probs=127.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eC--CCeEEEEeCCCC
Q 023018           66 EVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GL--DGLVQIWDPSSG  139 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~--dg~i~i~d~~~~  139 (288)
                      .+....|+|++..+++..+.   ...|+++|+.+++...... ..+......|+|+|+.|+.. +.  +..|.++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            77889999954443554333   3569999998876554443 45556678899999876644 33  357888898777


Q ss_pred             ceeEEeccCCCCEEEEEEcCCCCEEEEecCC-C--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC----
Q 023018          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-S--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD----  212 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----  212 (288)
                      +.. .+..+........|+|+|+.|+..+.. +  .|+++|+.+++..+.... ...  ...|+|+|++|+..+..    
T Consensus       268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence            643 333333334456899999977776642 2  688889987765443321 111  24899999998776643    


Q ss_pred             -----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEE
Q 023018          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCC  272 (288)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~  272 (288)
                           ..|.+.|+.++.. ..+...    .......|+|||+.|+.....   ..+.+.++...+...
T Consensus       344 ~~~~~~~I~v~d~~~g~~-~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~  406 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYI-RRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL  406 (419)
T ss_pred             cCCCCcEEEEEECCCCCe-EECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence                 3688889987764 334321    122357899999987765543   247778876544443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.44  E-value=6.9e-11  Score=89.66  Aligned_cols=208  Identities=12%  Similarity=0.084  Sum_probs=141.1

Q ss_pred             EEEEEcCC----CCcEEEEEeCCCeEEEEEccCCeee-EeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeCCCCce
Q 023018           68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        68 ~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      +.+.|-|.    .-.+||.|+..|...+|...+.+.. .....|...|+-+.=.-+ ...+..++.|.++++.++..+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            34566662    3357889999999999999865433 223334333322111111 22466777888888887765543


Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-c-EEEEe-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-A-YLNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~-~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      ...+....-.+.+++++++++++++.+....|..|.+... . .+... ......-.+..|+.....+|++..||++.||
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence            3333223234889999999999999999999999988653 2 22212 2233344677899988899999999999999


Q ss_pred             eCCCCceeEEE--cCCCccccCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          219 NPKSGENIHVI--RGHPYHTEGLTCLTISADS--TLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       219 d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      |++........  ...+.|.+.++.+.|++.|  .+|+..-.-+.+.+.|+++++-...+.
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            99976543322  1222388999999999865  456665567899999999998877763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=6.4e-11  Score=90.86  Aligned_cols=187  Identities=15%  Similarity=0.260  Sum_probs=137.5

Q ss_pred             CCCeEEEEEccCCeeeE--eec-cccCcEEEEEEec---CCC-EEEEEeCCCeEEEEeCCCCceeEEeccCC------CC
Q 023018           85 GDDKGFFWRINQGDWAS--EIQ-GHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPG------GG  151 (288)
Q Consensus        85 ~dg~i~iw~~~~~~~~~--~~~-~~~~~i~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~  151 (288)
                      ..|.+.+|++...+...  .++ .....+..+.|..   ++. .++-+...|.|.+|..........+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34789999988765433  222 2345677888863   444 56667788999999876554444444321      12


Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV  228 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (288)
                      ..++.|++.+..++++..+|.+.+.+......  ++.++.|...++...|+. +.+.+++|+.|+.+..||++... ...
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i  202 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI  202 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence            56788999999999999999999766655543  447889999999999987 56789999999999999999322 233


Q ss_pred             EcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEE
Q 023018          229 IRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVCC  272 (288)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t-~~~~~  272 (288)
                      +.....|..+|.++.-+| .+.+|++|+.|-.|++||.++ ++++.
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            333344888999998887 788999999999999999994 55554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.1e-10  Score=95.17  Aligned_cols=200  Identities=18%  Similarity=0.263  Sum_probs=137.8

Q ss_pred             CCCCEEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCC-EEEEE--eCC--
Q 023018           63 HSDEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQ-LLASG--GLD--  128 (288)
Q Consensus        63 h~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~l~~~--~~d--  128 (288)
                      |...|+.+.++|. ....+|+     .+.-+.|+||.+........+   ......=..+.|++-|. +|+.+  .-|  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            5677999999994 2345544     355678999998732211111   11122234588988776 22222  222  


Q ss_pred             -------CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE--ecCCCeEEEEECCcccEEEEeeccCCCeEEEEE
Q 023018          129 -------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA--GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF  199 (288)
Q Consensus       129 -------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  199 (288)
                             .+++++++........+. ..++|.++.|+|+++.+++  |-.-..+.|||++ +.++..+  ..++-.++-|
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~f  319 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFF  319 (566)
T ss_pred             CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEE
Confidence                   468888877333333333 5789999999999986665  4456789999985 5556555  4677889999


Q ss_pred             cCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcE
Q 023018          200 TPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKV  270 (288)
Q Consensus       200 ~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~t~~~  270 (288)
                      +|.|++|+.++-   -|.|-|||+.+.+++..+..     ..-+-+.|+|||.++++++.      |+.++||+.. |+.
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~  393 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSL  393 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cce
Confidence            999999988774   57899999998777766653     33456799999999998865      6789999975 554


Q ss_pred             EE
Q 023018          271 CC  272 (288)
Q Consensus       271 ~~  272 (288)
                      +.
T Consensus       394 l~  395 (566)
T KOG2315|consen  394 LH  395 (566)
T ss_pred             ee
Confidence            44

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.42  E-value=2.2e-09  Score=87.72  Aligned_cols=196  Identities=13%  Similarity=0.124  Sum_probs=138.1

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC----------CCeEEEEeCCCCceeEEeccCCC------
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------  150 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~------  150 (288)
                      ++|.+.|..+.+.+..+..-..+- .+ ++|+++.|+++..          +..|.+||..+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999988887544443 34 9999998777654          78999999999999988875322      


Q ss_pred             -CEEEEEEcCCCCEEEEec-C-CCeEEEEECCcccEEEEeeccC-------------------------------CCeEE
Q 023018          151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHG-------------------------------SSVTC  196 (288)
Q Consensus       151 -~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~-------------------------------~~i~~  196 (288)
                       ....++++|+|++|++.. . +..|.++|+.+++.+..+....                               .....
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence             234789999999999876 3 6889999998877655432100                               00111


Q ss_pred             E--------------EEcC-CCCEEEEEeCCCeEEEEeCCC-----CceeEEEcCC----CccccCeEEEEEcCCCCEEE
Q 023018          197 G--------------DFTP-DGKTICTGSDDATLRVWNPKS-----GENIHVIRGH----PYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       197 ~--------------~~~p-~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~  252 (288)
                      .              .|.+ ++.++++... |.|.+.|+..     ...+..+...    ......+.-++++|+++.|+
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            1              1234 6777777665 9999999543     2233332211    11334455599999998888


Q ss_pred             EEe----------CCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          253 SGS----------KDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       253 ~~~----------~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      +..          ..+.|.++|+.+++.+..+   .....+++++|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~D  309 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQD  309 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCC
Confidence            743          1257999999999999987   66788888886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.42  E-value=5.8e-10  Score=104.38  Aligned_cols=203  Identities=10%  Similarity=0.097  Sum_probs=135.6

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-----------------cCcEEEEEEec-CCCEEEEEeCC
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-----------------KDSVSSLAFSM-DGQLLASGGLD  128 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~d  128 (288)
                      -..+++.+.++.++++-...+.|+++++.++.. .++.+.                 -..-..++++| ++..+++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            467888874343444445567899999876543 232110                 01225789999 45566666778


Q ss_pred             CeEEEEeCCCCceeEEecc---------------CCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEee----
Q 023018          129 GLVQIWDPSSGNLKCTLEG---------------PGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS----  188 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----  188 (288)
                      +.|++||..++.... +.+               .-.....++++|++. ++++-+.++.|++||+.++.......    
T Consensus       705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            999999987765432 111               112356799999988 44555667999999998764321110    


Q ss_pred             ---------c--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC----------CccccCeEE
Q 023018          189 ---------G--------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----------PYHTEGLTC  241 (288)
Q Consensus       189 ---------~--------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~  241 (288)
                               .        .-.....++++++|+.+++-+.++.|++||..++.........          .........
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                     0        0113468899999998888888999999999876554332110          001235678


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      ++++++|+++++-+.++.|++||+.+++..
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence            999999999888889999999999998763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1e-10  Score=99.65  Aligned_cols=180  Identities=12%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCC----eEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEE-
Q 023018           64 SDEVYSVACSPTDATLVATGGGDD----KGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIW-  134 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~-  134 (288)
                      .+.....+|+|++..++++...+|    .+.+|++..+   ................+|+|+|+.|+..+ .+|...+| 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            344567899994444544443333    3444676542   32333322223446789999999877665 46655555 


Q ss_pred             -eCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          135 -DPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       135 -d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                       ++.. +.....+......+....|+|+|+.|+..+..   ..|++||+.+++... +......+....|+|+|+.|+..
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEE
Confidence             4432 23334444444567789999999988876543   469999998887543 33233456788999999988754


Q ss_pred             eC---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018          210 SD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       210 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                      ..   ...|+++|+.+++......    ....+...+|+|-.
T Consensus       389 ~~~~g~~~L~~vdl~~g~~~~Lt~----~~g~~~~p~Ws~~~  426 (428)
T PRK01029        389 AGNSNESELYLISLITKKTRKIVI----GSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCceEEEEECCCCCEEEeec----CCCcccCceecCCC
Confidence            43   3468899998776544443    23445667888743

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=4.3e-11  Score=93.69  Aligned_cols=158  Identities=18%  Similarity=0.352  Sum_probs=123.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc----CCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe----
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN----QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD----  135 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d----  135 (288)
                      ..+++++++.+ ....|+.|-..|++.-+.+.    .....+.+..|...+..+.|+....++++.+.|..+.---    
T Consensus        68 P~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   68 PSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            46789999998 78889999999999888764    3445555667888888888876666777766654432111    


Q ss_pred             -------------------------------------CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC
Q 023018          136 -------------------------------------PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA  178 (288)
Q Consensus       136 -------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  178 (288)
                                                           .....++.++.+|.+.+.+++|.|....+++|..|..+.+||+
T Consensus       147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence                                                 1112345567889999999999999999999999999999999


Q ss_pred             Cccc-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          179 DRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       179 ~~~~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ...+ ....+.+|...|..+...+.-+.|++++.||.|.+|+...
T Consensus       227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            6553 3456678999999998888888999999999999999863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.9e-11  Score=105.30  Aligned_cols=186  Identities=15%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ...++|++++   ..+++.|+.+|.|++++.....  .+...|...      ..+|.++++|+.||+|.|-.+.+.+...
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            4568888885   4689999999999999976433  333334433      5689999999999999999998888777


Q ss_pred             EeccCCCCEEEEEEcCC-----CCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      .+.- ..++.+++++|+     .+.+++|+..| +.++.-+-.  +.-..+....++|.+++|.  |+++|-++.+| |+
T Consensus       108 ~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  108 QYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             eEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            6663 457999999996     56899999988 777653211  1112455677899999996  78888888776 89


Q ss_pred             EEeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      |||+.+++.+..+.....   .......+.|.++.+++ . |...+|+|..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEec
Confidence            999998887776654321   11224567888765443 3 4667899999883

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.40  E-value=4.7e-12  Score=95.42  Aligned_cols=169  Identities=20%  Similarity=0.277  Sum_probs=110.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeecc-ccCcEEEEEEecCCCEEEEEeC--
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQG-HKDSVSSLAFSMDGQLLASGGL--  127 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--  127 (288)
                      ....+.+.+..|+++-.+-+.+- -..-+++++.||.+.+.+.+.... ...+.. |.+ -.+.++...+..+.++.-  
T Consensus        77 ~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~  154 (319)
T KOG4714|consen   77 DGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGN  154 (319)
T ss_pred             cCcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcce
Confidence            33455566666665544444443 445788999999999999865211 111111 111 122334445555544421  


Q ss_pred             ---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcC-
Q 023018          128 ---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP-  201 (288)
Q Consensus       128 ---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p-  201 (288)
                         -+..+.|+++..+.+.........+.+++-+| +.+.+++|+.+|.+.+||.++.. +...++.|+.+++.+.|+| 
T Consensus       155 ~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  155 WNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             EeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence               23455666654433322222334599999999 55678888899999999999874 4556778999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q 023018          202 DGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ++..|++++.||.+-.||..+
T Consensus       235 ~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CchheeEecCCCcEEEEcCCC
Confidence            788999999999999999763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.40  E-value=5.8e-09  Score=82.67  Aligned_cols=207  Identities=18%  Similarity=0.206  Sum_probs=140.8

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      +.+|.+.++.++++--..+.|+.|+..++.... +.. .. ...+++. +++ .|+++...+ +.++|+.+++....+..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888677888888788999999998876543 221 22 5667777 564 555555544 56669988865544432


Q ss_pred             -----CCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE-EEeCCC
Q 023018          148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA  213 (288)
Q Consensus       148 -----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~dg  213 (288)
                           .....+.+++.|+|++.++....        |.|+.++.. ++...... .-.....|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34568899999999977776543        568888877 54333333 345678999999999876 455678


Q ss_pred             eEEEEeCCCCce----eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018          214 TLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD  283 (288)
Q Consensus       214 ~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~  283 (288)
                      .|..|++.....    ...+..........-.+++..+|++.++....+.|.+++.. |+++..+    ..+++++|.
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            899998853221    22232211122347789999999988888889999999987 8888866    557778773

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=2.3e-11  Score=95.16  Aligned_cols=208  Identities=14%  Similarity=0.209  Sum_probs=142.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeeccc------------cCcEEEEEEecCCC--EEEE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGH------------KDSVSSLAFSMDGQ--LLAS  124 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~------------~~~i~~~~~~~~~~--~l~~  124 (288)
                      .+-|.++.|.. .|.+||||..+|.|.++.-....     ....++.|            ...|..+.|.+++.  .++.
T Consensus        25 adiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            45689999998 88999999999999999754322     22334334            34688899998765  6777


Q ss_pred             EeCCCeEEEEeCCCCceeE--------------------Ee----------------ccCCCCEEEEEEcCCCCEEEEec
Q 023018          125 GGLDGLVQIWDPSSGNLKC--------------------TL----------------EGPGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~--------------------~~----------------~~~~~~i~~~~~~~~~~~l~~~~  168 (288)
                      .+.|.+|++|-+.......                    .+                ..|.-.|.++.++.++..++++.
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            7889999999875321110                    00                23455688999998888877764


Q ss_pred             CCCeEEEEECCcccE---EEEeecc-----CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----EEEcCC--C
Q 023018          169 EDSTVWMWNADRAAY---LNMFSGH-----GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HVIRGH--P  233 (288)
Q Consensus       169 ~dg~i~i~d~~~~~~---~~~~~~~-----~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~--~  233 (288)
                       |=.|.+|++.-...   +..++.+     ..-|++..|+| ..+.++.++..|+|++.|++....-    +.+...  +
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             57899999864321   2222222     34578899999 5677888888999999999853211    111111  0


Q ss_pred             -------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCcEEEEe
Q 023018          234 -------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI-TTGKVCCLN  274 (288)
Q Consensus       234 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~t~~~~~~~  274 (288)
                             .-...|..+.|+++|+++++-.. -+|++||+ ...+++.++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~  310 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY  310 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence                   02245788999999999987543 58999999 556666654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.39  E-value=7.2e-12  Score=97.96  Aligned_cols=203  Identities=15%  Similarity=0.266  Sum_probs=143.6

Q ss_pred             CCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCee-----------------------------------eEee-cccc
Q 023018           65 DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW-----------------------------------ASEI-QGHK  107 (288)
Q Consensus        65 ~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~-----------------------------------~~~~-~~~~  107 (288)
                      ..|..+.|.++ +...+...+.|.+|++|.+.....                                   .+.+ .+|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            46899999884 345677788899999999854210                                   1111 3578


Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE---EeccC-----CCCEEEEEEcC-CCCEEEEecCCCeEEEEEC
Q 023018          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC---TLEGP-----GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNA  178 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~-----~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  178 (288)
                      -.|+++.++.++..++++ .|=.|.+|++.--....   -++.+     ..-|++..||| ..+.++..+..|+|++.|+
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            889999999999888876 47789999986432221   12222     23588899999 4568888888899999999


Q ss_pred             CcccEEEE----------------eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEEcCCCcc------
Q 023018          179 DRAAYLNM----------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVIRGHPYH------  235 (288)
Q Consensus       179 ~~~~~~~~----------------~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~------  235 (288)
                      |...+.-.                +..--+.|..+.|++.|+++++-.. -+|++||+ ...+++.++..+...      
T Consensus       244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence            85432110                1122356889999999999998653 57999999 455666666654321      


Q ss_pred             ---ccC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          236 ---TEG---LTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       236 ---~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                         ...   -..++|+-++.++++|+....+++|++..|.
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence               111   2457888888899999999999999976654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3.4e-09  Score=83.93  Aligned_cols=214  Identities=18%  Similarity=0.303  Sum_probs=143.3

Q ss_pred             EEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeeeEe--eccccCc----------EEEEEEecCCCEEEEEeC-CCeEE
Q 023018           68 YSVACSPTDATLVATG-GGDDKGFFWRINQ-GDWASE--IQGHKDS----------VSSLAFSMDGQLLASGGL-DGLVQ  132 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~--~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~  132 (288)
                      +-+++++ ++++|+++ ...|.|.++.++. +.....  ...|.+.          +.+..+.|++++|++..- --.|.
T Consensus        92 ~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence            7788888 55565555 4458899999865 332211  1124443          889999999999888753 34699


Q ss_pred             EEeCCCCceeEEe---ccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcc-c---EEEEee------ccCCCeEEEE
Q 023018          133 IWDPSSGNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA-A---YLNMFS------GHGSSVTCGD  198 (288)
Q Consensus       133 i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~---~~~~~~------~~~~~i~~~~  198 (288)
                      +|++..+++...-   -......+.|.|+|++++.++.+. +++|.+|..... .   .++.+.      ........|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9999977653321   135567899999999998777664 899999988763 2   222221      1234677899


Q ss_pred             EcCCCCEEEEEeC-CCeEEEEeCCCC-ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEEc--CCCcEEEE
Q 023018          199 FTPDGKTICTGSD-DATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNI--TTGKVCCL  273 (288)
Q Consensus       199 ~~p~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~--~t~~~~~~  273 (288)
                      ++|+|++|+++.. ...|.+|.+... ..+..+.....+....+.+.++|.+++|+++..++ .|.+|..  .||++-..
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~  330 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL  330 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence            9999999998864 236777765432 33443333333455578899999999999988754 6777766  46665544


Q ss_pred             e-----cceEEEEE
Q 023018          274 N-----FQYTCVAY  282 (288)
Q Consensus       274 ~-----~~~~~~~~  282 (288)
                      .     ....|+.|
T Consensus       331 ~~~~~~p~Pvcv~f  344 (346)
T COG2706         331 GRYAVVPEPVCVKF  344 (346)
T ss_pred             ccccCCCCcEEEEE
Confidence            3     34555555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.35  E-value=7.6e-12  Score=106.82  Aligned_cols=211  Identities=15%  Similarity=0.266  Sum_probs=151.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ......+.||+.+|+.+-|+|+....+|+++.|..+..||+++. .++.....-......++|+-....+.+.+....|+
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            34456778999999999999999999999999999999999874 34444444444557899987666666667788999


Q ss_pred             EEeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEE-EEeeccCCCeEEEEEcCCCCEEEE-
Q 023018          133 IWDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICT-  208 (288)
Q Consensus       133 i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~p~~~~l~~-  208 (288)
                      +||++.+ .++..+++|...+..+.|.. ....+.+++.||+|++||....... ........+|+.-++.|-|.-.++ 
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m  263 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM  263 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence            9999876 56778888888899999976 3447889999999999998754322 112234567888888885543322 


Q ss_pred             -EeCCCeEEEEeCCC----------CceeEEEcCCCccccCeEEEEEcCC----------CCEEEEEeCCCcEEEEEcCC
Q 023018          209 -GSDDATLRVWNPKS----------GENIHVIRGHPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       209 -~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~t  267 (288)
                       .-.+..+.+++.++          .+++.++.+   |...|....|...          .-.|++-+.|..+++|-+.+
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G---H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG---HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecC---cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             11222444444332          245677777   6666665555432          23689999999999999875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=4.8e-12  Score=103.03  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=143.7

Q ss_pred             eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEE
Q 023018           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWM  175 (288)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i  175 (288)
                      ....+..|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|...|....|-|  ..+-+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            445678899999999999999999999999999999999988777765 5777788888888  3458999999999998


Q ss_pred             EECCccc-E--EEEeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCCC
Q 023018          176 WNADRAA-Y--LNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADS  248 (288)
Q Consensus       176 ~d~~~~~-~--~~~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~  248 (288)
                      =.+.... +  ...+..|.++|..++.-|+. ..|++++.|+.+.-+|++.+.+...+.....+..   ....++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            7764332 2  23455699999999999954 5589999999999999998766555443322333   57788999954


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCcEE------EEe----------cceEEEEEee
Q 023018          249 -TLALSGSKDGSVHMVNITTGKVC------CLN----------FQYTCVAYDL  284 (288)
Q Consensus       249 -~~l~~~~~dg~i~iwd~~t~~~~------~~~----------~~~~~~~~~~  284 (288)
                       ..+++|+.|..+++||.+.-..-      ..+          ..++|++|+.
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence             58899999999999998753222      111          4677888874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.4e-10  Score=94.83  Aligned_cols=167  Identities=16%  Similarity=0.308  Sum_probs=118.2

Q ss_pred             EEEEcCCCCcEEEEEeC--C---------CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe--CCCeEEEEe
Q 023018           69 SVACSPTDATLVATGGG--D---------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG--LDGLVQIWD  135 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~--d---------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d  135 (288)
                      .+.|++.+..+|+.++.  |         .++++..+........+. -.++|+++.|+|+++-|+++.  .=..+.|||
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            46677744444444322  2         357777776434444443 478999999999998766553  456899999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-  211 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-  211 (288)
                      ++ +.++..+  ..++-+++-|+|.|++|+.++.+   |.|-|||+.+.+++..+.....  +-..|+|+|++++|++. 
T Consensus       301 lr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  301 LR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecc
Confidence            76 4444444  56677899999999999888764   7899999999988888875544  45689999999999874 


Q ss_pred             -----CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          212 -----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       212 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                           |+.++||+.. |..+....    .......+.|-|
T Consensus       376 PRlrvdNg~Kiwhyt-G~~l~~~~----f~sEL~qv~W~P  410 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYT-GSLLHEKM----FKSELLQVEWRP  410 (566)
T ss_pred             ccEEecCCeEEEEec-Cceeehhh----hhHhHhheeeee
Confidence                 6779999974 65544332    112466677776

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.4e-09  Score=89.27  Aligned_cols=188  Identities=11%  Similarity=0.063  Sum_probs=120.2

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCE-EEEEeC---CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      .|.+-|..... ...+... ..+....|+|+|+. ++..+.   ...|.++|+.+++...... ..+......|+|+|+.
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            45555544333 2333323 37788999999984 554433   3579999998887655443 4455667889999987


Q ss_pred             EEEec-C--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCcccc
Q 023018          164 VLAGS-E--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       164 l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      ++... .  +..|+++++.++.. ..+..+........|+|+|+.|+..+. .+  .|+++|+.+++..+.....  .  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~--  321 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--K--  321 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--C--
Confidence            76543 2  35788889877764 334433333445689999998877663 23  6888899877654433211  1  


Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEec--ceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVCCLNF--QYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~t~~~~~~~~--~~~~~~~~~d  285 (288)
                        ....|+|+|+.|+..+..         ..|++.|+.++.......  ......|+||
T Consensus       322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPD  378 (419)
T PRK04043        322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSD  378 (419)
T ss_pred             --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCC
Confidence              124899999988766543         378999998887654432  2234666665

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.32  E-value=1.1e-08  Score=80.96  Aligned_cols=207  Identities=16%  Similarity=0.194  Sum_probs=151.7

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeeeEeeccccCcEE--EEEEecCCCEEEEEeC-----CCeEEEEeCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSVS--SLAFSMDGQLLASGGL-----DGLVQIWDPS  137 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~-----dg~i~i~d~~  137 (288)
                      ....++.+|.....++.+..-|+ ..+||..+++....+....+.-.  .-.|+++|++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            45678889977888888888775 78899999988877754333221  4579999999998743     5899999998


Q ss_pred             -CCceeEEeccCCCCEEEEEEcCCCCEEEEecC------------------CCeEEEEECCcccEEEEee----ccCCCe
Q 023018          138 -SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------------------DSTVWMWNADRAAYLNMFS----GHGSSV  194 (288)
Q Consensus       138 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~i  194 (288)
                       +.+.+..+..+.-....+.+.|+++.|+++..                  +..+...|..+++.+.+..    .|...|
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             66778888888778888999999987777642                  2356667778888776643    377789


Q ss_pred             EEEEEcCCCCEEEEEeCCCe-------EEEEeCCCCceeEEEcCCC----ccccCeEEEEEcCCCCEEE-EEeCCCcEEE
Q 023018          195 TCGDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLAL-SGSKDGSVHM  262 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i  262 (288)
                      +.+++.++|..++..-..|.       |.+++.  +..+..+....    .....+-++++++++.+++ ++-..|.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999877766654442       444443  33333333211    1345688999999987765 4556789999


Q ss_pred             EEcCCCcEEEEe
Q 023018          263 VNITTGKVCCLN  274 (288)
Q Consensus       263 wd~~t~~~~~~~  274 (288)
                      ||..+|+.+...
T Consensus       244 ~d~~tg~~~~~~  255 (305)
T PF07433_consen  244 WDAATGRLLGSV  255 (305)
T ss_pred             EECCCCCEeecc
Confidence            999999998876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=3.5e-10  Score=96.69  Aligned_cols=205  Identities=16%  Similarity=0.251  Sum_probs=139.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---------------eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      .....|++|+. ...++|+|+.||.+++..+.+..               .-+++.+|++.|.-+.|+.+.+.|-++..+
T Consensus        14 nvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34689999999 77899999999999999986521               223567899999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEe--ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE----EE-----------------
Q 023018          129 GLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LN-----------------  185 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~-----------------  185 (288)
                      |.|.+|-+-.+.....+  ....+.|.+++|+.+|..|.....||.|.+=.+...+.    +.                 
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999998777543332  23456788999999999988888888776654432110    00                 


Q ss_pred             -------------------------------EeeccCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018          186 -------------------------------MFSGHGSSVTCGDFT--------PDGKTICTGSDDATLRVWNPKSGENI  226 (288)
Q Consensus       186 -------------------------------~~~~~~~~i~~~~~~--------p~~~~l~~~~~dg~i~i~d~~~~~~~  226 (288)
                                                     .+......|..+.|.        |+...|+++-..|.+.|-.-.+....
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence                                           000011123334443        35556777777777766554443333


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEe
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVCCLN  274 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~t~~~~~~~  274 (288)
                      ..+.    ....+....|+++|.+|++++.+         +.|.+|.. -|+.+.++
T Consensus       253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl  304 (1189)
T KOG2041|consen  253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL  304 (1189)
T ss_pred             eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEE
Confidence            3333    23567888999999999998764         25666653 34555544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.31  E-value=4.4e-11  Score=95.32  Aligned_cols=160  Identities=21%  Similarity=0.183  Sum_probs=111.1

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCccc
Q 023018          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAA  182 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~  182 (288)
                      ...+..++.+++||++..+....++++.....    ...+.... ..+++.|-........+...   ..+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34455677888899888877777777654432    22222222 23444444444444444444   445555554444


Q ss_pred             EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       183 ~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      + ..+-+|-+-++.++|+||+++++++..|..|+|-.....-.+..+.-.  |...|..++.-++ ..|++++.|++|++
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG--H~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG--HKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc--cHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            3 334479999999999999999999999999999877655444444332  8888999998875 55899999999999


Q ss_pred             EEcCCCcEEEEe
Q 023018          263 VNITTGKVCCLN  274 (288)
Q Consensus       263 wd~~t~~~~~~~  274 (288)
                      ||+.+|+++.++
T Consensus       220 Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  220 WDITSGKLLDTC  231 (390)
T ss_pred             EecccCCccccc
Confidence            999999998655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=2.3e-09  Score=87.71  Aligned_cols=176  Identities=19%  Similarity=0.232  Sum_probs=137.0

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeEEeccCCC
Q 023018           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG  150 (288)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~  150 (288)
                      |++.++.+++..+. |...|.+...+-.++.  ++.+.|.-..+..++.-++.|..|| .+-|||..+++.. .+...-+
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg  402 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLG  402 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCcc
Confidence            45556778888876 7888887665543332  3677788888888888899999999 9999999887644 4555667


Q ss_pred             CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcee
Q 023018          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI  226 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~~~  226 (288)
                      .|.++..+|+|++++++.....|.+.|+.++.....-+...+-|+.+.|+|+++++|-+--+|    .|++||+.+++..
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            899999999999999999999999999999986665566677899999999999999877666    6899999887765


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      .....    ...=.+-+|.|++++|.--+
T Consensus       483 ~vTT~----ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         483 DVTTP----TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EecCC----cccccCcccCCCCcEEEEEe
Confidence            54432    12223447888998877554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.28  E-value=7.6e-11  Score=94.00  Aligned_cols=160  Identities=17%  Similarity=0.189  Sum_probs=114.0

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee----eEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS  138 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~  138 (288)
                      ....+..++ +++++|.+..+....++++.....    ...+.. ...-+++.|..+.....++..   ...+.+|....
T Consensus        64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             cccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            344555666 788888888888877777765432    222222 222345555555555555443   34555665554


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      +.. ..+-+|-+.+..++|+|++++|+++..|..|++-.......+..+- +|...|..++..++ ..|++++.|++|++
T Consensus       142 ~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            433 3345789999999999999999999999999998876665565554 69999999999864 56899999999999


Q ss_pred             EeCCCCceeEEE
Q 023018          218 WNPKSGENIHVI  229 (288)
Q Consensus       218 ~d~~~~~~~~~~  229 (288)
                      ||+++|+.+.++
T Consensus       220 Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  220 WDITSGKLLDTC  231 (390)
T ss_pred             EecccCCccccc
Confidence            999999887554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.9e-11  Score=95.75  Aligned_cols=148  Identities=13%  Similarity=0.207  Sum_probs=114.8

Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-----cEEEEeeccCCCeEEE
Q 023018          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCG  197 (288)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~  197 (288)
                      ++.+.+..|-+-++.++-.. .|. ..+.|.++.|+..+++++.|+.+|.|..+|+|.+     .+...+ .|.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            44555677888888877433 333 5566899999998999999999999999999865     234444 489999999


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          198 DFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       198 ~~~p-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      .... ++++|++.+.+|+|.+||++.-+.   +....+|..... ..-+-..+....+++++.|...+||.++.|.++++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a-~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA-YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc-ccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            8877 788999999999999999987666   666666432222 22234456667888899999999999999999998


Q ss_pred             e
Q 023018          274 N  274 (288)
Q Consensus       274 ~  274 (288)
                      +
T Consensus       384 i  384 (425)
T KOG2695|consen  384 I  384 (425)
T ss_pred             c
Confidence            7

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.28  E-value=2.5e-10  Score=99.85  Aligned_cols=182  Identities=15%  Similarity=0.193  Sum_probs=137.9

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  156 (288)
                      +..++.|+....+..+|+.+.+..+...-....|+-|+.  +++++.+|...|+|.+-|..+.+.++++..|.+.|..+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            344556666667777888877766666544445665554  678999999999999999999999999999999888766


Q ss_pred             EcCCCCEEEEecC---------CCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ce
Q 023018          157 WHPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSG-EN  225 (288)
Q Consensus       157 ~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~-~~  225 (288)
                      .  .|+.|++++.         |..|+|||+|..+.+.-+.-+.++ .-+.|.| -...+++++..|...+-|..+. .+
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            5  6889998875         456899999988777666544444 5577888 4567888899999999994432 22


Q ss_pred             -eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          226 -IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       226 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                       ....... .....+..++++++++.|+.|..+|.|.+|.
T Consensus       302 ~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             1222211 1455699999999999999999999999998

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=2.1e-08  Score=94.14  Aligned_cols=203  Identities=16%  Similarity=0.233  Sum_probs=135.8

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--c------------cCcEEEEEEecCCCEEEEEe-CCCeEE
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--H------------KDSVSSLAFSMDGQLLASGG-LDGLVQ  132 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~------------~~~i~~~~~~~~~~~l~~~~-~dg~i~  132 (288)
                      ..+++++.++.++++-+..+.|++|+... ..+..+..  .            -..-..+++.+++..|+++. ....|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875677888888889999999764 43333322  0            11246789998888666654 457899


Q ss_pred             EEeCCCCceeEEeccC-----------------CCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeec-----
Q 023018          133 IWDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----  189 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  189 (288)
                      ++|+.++... .+.+.                 -.....++++| ++.++++.+.++.|++||..++... .+.+     
T Consensus       650 ~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            9998776532 22110                 11346799999 5667777778899999998776432 2211     


Q ss_pred             ----------cCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceeEEEcCCC------------------ccccCeE
Q 023018          190 ----------HGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLT  240 (288)
Q Consensus       190 ----------~~~~i~~~~~~p~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~~~v~  240 (288)
                                .-.....|+++|+++.|++ -+.++.|++||+.++.......+..                  .......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      1123567999999986554 4557899999998765321111000                  0112346


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          241 CLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      .++++++|.++++-..+++|++||..++.+...
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            889999999888888899999999998876643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.27  E-value=7e-09  Score=84.95  Aligned_cols=184  Identities=17%  Similarity=0.251  Sum_probs=133.8

Q ss_pred             eCCCeEEEEEccCCeeeEe-e--c---ccc-----CcEEEEE-Eec-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC
Q 023018           84 GGDDKGFFWRINQGDWASE-I--Q---GHK-----DSVSSLA-FSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG  150 (288)
Q Consensus        84 ~~dg~i~iw~~~~~~~~~~-~--~---~~~-----~~i~~~~-~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  150 (288)
                      +..|.|++||..+...... +  .   ...     .+..-+. |++ +|.+++..+. |...|.+...+-.++.  ++.+
T Consensus       284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~  360 (668)
T COG4946         284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKG  360 (668)
T ss_pred             ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCC
Confidence            3348899999876443221 0  0   001     1111111 332 6788888875 7788877665544432  3556


Q ss_pred             CEEEEEEcCCCCEEEEecCCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018          151 GVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI  229 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (288)
                      .|....+..++.-++.|..|| .+-|||.++++ +..+...-+.|.++..+|+|++++++.....|.++|+.++.....-
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id  439 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID  439 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence            688888888888999999999 89999998876 4455556678999999999999999999999999999998754332


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCcEEEEe
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDG----SVHMVNITTGKVCCLN  274 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~t~~~~~~~  274 (288)
                      +.   ...-|+.+.|+|++++++-+--+|    .|+++|+.+++.....
T Consensus       440 kS---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         440 KS---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             cc---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            22   456799999999999999876554    6999999998877654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.26  E-value=3.8e-11  Score=90.63  Aligned_cols=197  Identities=16%  Similarity=0.183  Sum_probs=119.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDW------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      |+.+.++  ....|+++..++.+......++..            ...+..|.++-.+-+.+--+..++++..||.+.++
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            5666665  345667777666665555433322            22222333322222223345678999999999999


Q ss_pred             eCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECCcccEEEEeeccCCCeEEEEEcCC-CCEEE
Q 023018          135 DPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTIC  207 (288)
Q Consensus       135 d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~-~~~l~  207 (288)
                      +.+.-. ....+......-.+.++-..++.+.++..     -+..+.|+++..+.+..-......|++++-+|. ...++
T Consensus       117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            876521 11112222222223333334555555433     134566666544332222222334899999994 45677


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +|+.||.+.+||.++......+  ...|+.+++.+-|+| ++..|+++++||.+..||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8889999999999976432222  223889999999999 778999999999999999875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=9.5e-09  Score=81.45  Aligned_cols=181  Identities=15%  Similarity=0.216  Sum_probs=127.5

Q ss_pred             CCeEEEEEccCCe----eeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCC--CceeE--EeccCCCCEEE
Q 023018           86 DDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS--GNLKC--TLEGPGGGVEW  154 (288)
Q Consensus        86 dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~--~~~~~--~~~~~~~~i~~  154 (288)
                      +.-|++|++.+.+    .+.. -...+..+-|+|+|+.+.|.++..   .|.|.-|.+..  |+...  .......+.+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            4669999998432    1222 235566788999999998888754   47777777764  44322  22234445589


Q ss_pred             EEEcCCCCEEEEecC-CCeEEEEECCc-ccE---EEEeeccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEE
Q 023018          155 VSWHPRGHIVLAGSE-DSTVWMWNADR-AAY---LNMFSGHGSS----------VTCGDFTPDGKTICTGSD-DATLRVW  218 (288)
Q Consensus       155 ~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~---~~~~~~~~~~----------i~~~~~~p~~~~l~~~~~-dg~i~i~  218 (288)
                      +++++++++++++.. .|.|.++-++. |.+   +..+ .|..+          +....+.|++++|++... --.|.+|
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            999999999998875 47899998865 332   2222 24444          788999999999988764 3369999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTG  268 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~  268 (288)
                      ++..|.....-...-......+.|.|+|++++..+.++ +++|.+|.....
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            99877653322222225677899999999999887765 899999999873

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=2.5e-11  Score=100.77  Aligned_cols=173  Identities=13%  Similarity=0.210  Sum_probs=130.9

Q ss_pred             eEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCe
Q 023018          100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST  172 (288)
Q Consensus       100 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  172 (288)
                      +..+.+|...|..++--.+.+.+++++.|.+|++|.++.       ..+..++..|..+|..+.|-.+.+.+++  .||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            445678888888887766777899999999999999863       2356677889999999999888777665  4789


Q ss_pred             EEEEECCcccEEEEee--ccCCCeEEEEEcC--CCCEEEEE-eCCCeEEEEeCCCCceeEEEcCC--CccccCeEEEEEc
Q 023018          173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTP--DGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS  245 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~  245 (288)
                      |.+||.-.++++....  ...+.+..+..-|  +...++.| +...+|+++|.+.+.-...++..  +.....+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987777665332  1223344444444  33344444 67889999999988765554432  3355678999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          246 ADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       246 ~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.|++++++-..|.|.+.|.++|+++..-
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            99999999999999999999999988744

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.24  E-value=1.2e-08  Score=80.41  Aligned_cols=187  Identities=18%  Similarity=0.209  Sum_probs=123.8

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe-ccCC---CCEE
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPG---GGVE  153 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~  153 (288)
                      ..+++++.++.|+.||..+++.+..+.. ..++.... ...+..+++++.++.|+.+|..+|+.+... ....   ....
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            4556668899999999999998877764 22222111 224556777778889999999999988874 3221   1112


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----------VTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       154 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      .......+..++++..++.|..+|+++|+.+..+......          +..-....++ .++.++.++.+..+|+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg  193 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG  193 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC
Confidence            2222223778888888999999999999998887653322          1121222234 7777887886444499999


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      +.+.... .    ..+.. .....+..|++++.++.|.+||++||+.+..
T Consensus       194 ~~~w~~~-~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  194 EKLWSKP-I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEEEC-S----S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CEEEEec-C----CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            8654322 1    11222 1345677888888999999999999998754

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=2.9e-08  Score=76.52  Aligned_cols=202  Identities=15%  Similarity=0.133  Sum_probs=130.9

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeecc---ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           70 VACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ++.+. ++++||.-. |..|.|-..++.  ..+.+.+.   ....-.-++|+|++.+||.+...|+|++||+.... +..
T Consensus         3 ~~~~~-~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    3 LALSS-DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             eeecC-CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence            45565 777776654 567777665542  22222222   22334689999999999999999999999987533 333


Q ss_pred             eccC-------CCCEEEEEEcCC------CCEEEEecCCCeEEEEECCc-----ccEEEEeec---cCCCeEEEEEcCCC
Q 023018          145 LEGP-------GGGVEWVSWHPR------GHIVLAGSEDSTVWMWNADR-----AAYLNMFSG---HGSSVTCGDFTPDG  203 (288)
Q Consensus       145 ~~~~-------~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~---~~~~i~~~~~~p~~  203 (288)
                      +...       ...|..+.|-+.      ...|++-...|.++-|-+..     .+....+..   ....|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            3321       235677777542      22566667778887766422     233344432   45689999999988


Q ss_pred             CEEEEEeCC-----------CeEEEEeCCCCceeE--------------------------EEcCCCccccCeEEEEEcC
Q 023018          204 KTICTGSDD-----------ATLRVWNPKSGENIH--------------------------VIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       204 ~~l~~~~~d-----------g~i~i~d~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~  246 (288)
                      +.|++|+..           .-+..|.+-++.+..                          .+.........|..|..||
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            888777531           135667554332111                          0011112356789999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          247 DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ||..|++...+|.|.+|++.+-++...-
T Consensus       240 dg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            9999999999999999999988776654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=2.1e-09  Score=92.75  Aligned_cols=213  Identities=13%  Similarity=0.100  Sum_probs=158.3

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCC-----------CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC--
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPT-----------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--  118 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~--  118 (288)
                      ..-+.++.+.-|+..|+.+.|.|.           ...++|++...|.|.+||...+..+..+..|..++..++|-+.  
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            345677888889999999999882           2346888888999999999999988999999999999999863  


Q ss_pred             -C-CEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCc-------ccEEEEee
Q 023018          119 -G-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-------AAYLNMFS  188 (288)
Q Consensus       119 -~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~  188 (288)
                       . ..|++-....+|.+|+..+|+.............|+.+.| +.+.+..-+..|.+.+.+.-.       ++..+.-.
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s  202 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS  202 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence             3 3666667778999999999998888777677788899999 666777777778887776521       22222222


Q ss_pred             ccCC-----------------C--------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE
Q 023018          189 GHGS-----------------S--------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT  243 (288)
Q Consensus       189 ~~~~-----------------~--------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~  243 (288)
                      .|..                 +        ...++|+|.-+-++....-..+.++|++-...+..+..   ..+.+.-+.
T Consensus       203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~  279 (1062)
T KOG1912|consen  203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVD  279 (1062)
T ss_pred             CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeE
Confidence            2211                 0        12356788655555556677899999987777777765   344555677


Q ss_pred             EcCCC--CEEEEEeCCCcEEEEEcCC
Q 023018          244 ISADS--TLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       244 ~~~~~--~~l~~~~~dg~i~iwd~~t  267 (288)
                      |-|++  ..|++...+|.+.+|--+.
T Consensus       280 vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  280 VLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eccCCCcceEEEEecCCeEEEEEeec
Confidence            77755  5799999999999997654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.23  E-value=5.3e-09  Score=96.42  Aligned_cols=202  Identities=13%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEE----EccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-  137 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-  137 (288)
                      ..+.|.++.+.+ +...++.+..+|.|.+.    +..... +.....-...|.+++||||+..|+..+.++++.+.... 
T Consensus        74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            456799999999 66677788888999999    444322 23333356799999999999999999988888876411 


Q ss_pred             --------------C--------CceeEEecc------------------------CCCCEEEEEEcCCCCEEEEecC--
Q 023018          138 --------------S--------GNLKCTLEG------------------------PGGGVEWVSWHPRGHIVLAGSE--  169 (288)
Q Consensus       138 --------------~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~--  169 (288)
                                    .        |+....|.+                        ....-..|+|-.||.++|+.+-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                          0        111111111                        1224567899999999998874  


Q ss_pred             -C---CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEEcCCC-ccccCeEE
Q 023018          170 -D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGHP-YHTEGLTC  241 (288)
Q Consensus       170 -d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~  241 (288)
                       .   ..++||+- .|.+..+-..-.+--.+++|.|.|+++|+...   ...|.+|. ++|..-..|.... .....|..
T Consensus       232 ~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence             2   47999985 46655444433344467899999999988764   34577776 4565544444321 24567999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +.|++++.+|+....|. |.+|-..+-.
T Consensus       310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             EEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            99999999999977654 9999887643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=6.2e-12  Score=109.48  Aligned_cols=204  Identities=17%  Similarity=0.235  Sum_probs=155.6

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CC-
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG-  129 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg-  129 (288)
                      ..-++...++.|...-+|++|+- +.+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.+|..+++.+. .. 
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             hhcccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence            44567788889999999999998 8889999999999999999999999999999999999999999987665543 33 


Q ss_pred             eEEEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCC
Q 023018          130 LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGK  204 (288)
Q Consensus       130 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~  204 (288)
                      ...+|++.. +...+.|.    .-.++.|+.....-+.|+......+||++++.++.++-.    ....-.+..|+|...
T Consensus      1168 lsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             hHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            577998864 34444544    346788887655666677777899999999877766321    222336788999877


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .++   .||  .+||++..+.++.|....    --..-.|+|.|.-++..+     -|||++|.+.+...
T Consensus      1244 LIl---ndG--vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPEAIHRFDQFT----DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             eEe---eCc--eeeeeccHHHHhhhhhhe----ecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence            665   355  479999888777776532    112236999999888776     69999998887765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=6.5e-11  Score=92.79  Aligned_cols=172  Identities=15%  Similarity=0.161  Sum_probs=124.7

Q ss_pred             EEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----ceeE
Q 023018           70 VACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKC  143 (288)
Q Consensus        70 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~  143 (288)
                      ++|+-. .+.. ++.+.+-.|-+-++.++-. ..+. ..+.|.++.|...+++++.|+.+|.|..+|++..     ...+
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            356542 2333 4445556788888887643 2333 5678899999988999999999999999999865     2333


Q ss_pred             EeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccE---EEEeeccCCCe--EEEEEcCCCCEEEEEeCCCeEEE
Q 023018          144 TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSV--TCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i--~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      .+. |.+.|+++..-. ++.+|++.+.+|.|++||+|--++   +.++.+|-..-  .-+...+....+++++.|...||
T Consensus       294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            443 778899988776 788999999999999999987666   88888775433  23344566778888999999999


Q ss_pred             EeCCCCceeEEEcCCCcc-ccCeEEEEEc
Q 023018          218 WNPKSGENIHVIRGHPYH-TEGLTCLTIS  245 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~-~~~v~~~~~~  245 (288)
                      |.++.|..+.+++..... ...+.+++|.
T Consensus       373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EecccCceeeccCCCCccccccccceehh
Confidence            999999988887643211 2234555554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=6.8e-09  Score=95.72  Aligned_cols=198  Identities=16%  Similarity=0.277  Sum_probs=132.0

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------------------------eEeecc-----------
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------------------------ASEIQG-----------  105 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------~~~~~~-----------  105 (288)
                      ..-...|.|++||| ++.+|+..+.+++|.+-.-. ..+                        -..|.|           
T Consensus       117 G~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~  194 (928)
T PF04762_consen  117 GSVDSGILAASWSP-DEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR  194 (928)
T ss_pred             EEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc
Confidence            33456899999999 78888888888888776531 110                        001100           


Q ss_pred             -------------ccCcEEEEEEecCCCEEEEEeC---C---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018          106 -------------HKDSVSSLAFSMDGQLLASGGL---D---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA  166 (288)
Q Consensus       106 -------------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  166 (288)
                                   +...-..++|-.||.+||+.+-   .   ..|+||+-. |........-.+--.+++|.|.|++||+
T Consensus       195 ~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~  273 (928)
T PF04762_consen  195 DPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS  273 (928)
T ss_pred             CCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence                         2223456889999999998864   2   589999854 7665555544454567899999999998


Q ss_pred             ecC---CCeEEEEECCcccEEEEee----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCCcccc
Q 023018          167 GSE---DSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTE  237 (288)
Q Consensus       167 ~~~---dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~  237 (288)
                      ...   ...|.+|. ++|..-..|.    .....|..+.|++++..|+....+. |.+|-..+..-  .+.+.-.  ...
T Consensus       274 ~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--~~~  349 (928)
T PF04762_consen  274 SQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--SSE  349 (928)
T ss_pred             EEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc--CCC
Confidence            765   34566665 4554433333    3456899999999999999977655 99998776532  2222211  233


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 023018          238 GLTCLTISA-DSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  265 (288)
                      .+..+.|+| +...|...+.+|.+..+++
T Consensus       350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            455599999 5566777777677665544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1.3e-10  Score=107.90  Aligned_cols=164  Identities=16%  Similarity=0.273  Sum_probs=134.6

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE
Q 023018          106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL  184 (288)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  184 (288)
                      +-..|.++.=+|...+.++|+.||.|++|....++.+..++. ..+.++.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            455678888889889999999999999999998888777763 33789999999999999999999999999985 7778


Q ss_pred             EEeeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          185 NMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       185 ~~~~~~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                      ...+.|........|-.  ..+++++   .++.+.+||.--......+.  ..|...++++++.|..++|++|+.+|.|+
T Consensus      2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            88888998888888874  5666654   47789999964322222222  34889999999999999999999999999


Q ss_pred             EEEcCCCcEEEEe
Q 023018          262 MVNITTGKVCCLN  274 (288)
Q Consensus       262 iwd~~t~~~~~~~  274 (288)
                      +||++..+++.++
T Consensus      2362 l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTF 2374 (2439)
T ss_pred             EeehHHHHHHHHh
Confidence            9999987776654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.9e-10  Score=92.14  Aligned_cols=209  Identities=17%  Similarity=0.149  Sum_probs=151.7

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCeEEEEeCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPS  137 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~  137 (288)
                      -|.+.|+.+...  ...++.+++.||.++.|.-..   -+.+..+..|...|.+++.+-++.++.+.+. |..++++|+.
T Consensus         7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            377888888765  567899999999999998654   2345556678899999999999998999777 9999999988


Q ss_pred             CCceeEEecc--CCCCEEEEEEcCCCC---EEEE-ecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          138 SGNLKCTLEG--PGGGVEWVSWHPRGH---IVLA-GSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       138 ~~~~~~~~~~--~~~~i~~~~~~~~~~---~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +-..+.-++.  ..+.+ +...++ |.   .+++ ...+|.+.++|-+...  ....-.-|..+|.++.+.|-+..+++.
T Consensus        85 n~DminmiKL~~lPg~a-~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFA-EWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             ccchhhhcccccCCCce-EEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            7654433222  11212 122222 31   3333 3457899999977543  223334588999999999999999999


Q ss_pred             eCCCeEEEEeCCC-Ccee-----EE------EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          210 SDDATLRVWNPKS-GENI-----HV------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~dg~i~i~d~~~-~~~~-----~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ...|.|.-|.... .+..     ..      +-+.........++.|+|++..+.+-+.|..|+++.+++|++++.+
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            9999999998762 1111     11      1111224566789999999999999999999999999999988876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=2.2e-08  Score=84.58  Aligned_cols=194  Identities=15%  Similarity=0.116  Sum_probs=122.1

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEE
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS  156 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  156 (288)
                      +..+++++.+|.|+.+|..+++.+..+............  ++..+++++.+|.+..+|..+|+.+..............
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            346777888899999999999887766533322122222  466788888999999999999998876654332111111


Q ss_pred             EcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE-EEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 023018          157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG-DFTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHP  233 (288)
Q Consensus       157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  233 (288)
                      .  .+..++.++.+|.++.||.++++.+..+......+... .-+|  .+..++.+..+|.+..+|+++|+.+.......
T Consensus       143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            2  34577778889999999999998877765432211100 0011  23577888889999999999998765433110


Q ss_pred             ccc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          234 YHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       234 ~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ... .   .+..+.-+|  .+..+++++.+|.++.||..+|+.+...
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR  267 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence            000 0   000011111  2446666777788888888888766544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.14  E-value=2.6e-08  Score=75.90  Aligned_cols=192  Identities=12%  Similarity=0.027  Sum_probs=131.3

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeE-EeccCCCCEEEE
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKC-TLEGPGGGVEWV  155 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~-~~~~~~~~i~~~  155 (288)
                      -+..++.|.++++.++..+..........-.+.+++++++++++++.+....|..|.+....  ... ........-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            34456777888888776544333332222337899999999999999999999999886542  222 223334456788


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCcccEE-E----EeeccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEE
Q 023018          156 SWHPRGHIVLAGSEDSTVWMWNADRAAYL-N----MFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNPKSGENIHV  228 (288)
Q Consensus       156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~----~~~~~~~~i~~~~~~p~~~--~l~~~~~dg~i~i~d~~~~~~~~~  228 (288)
                      .|+.....+|+++.||++.|||+|..... .    +-..|.+.++.+.|+|.|.  +|+..-.-+.+.+.|++++...+.
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            99999999999999999999999875322 2    2234889999999998553  455555667899999999876665


Q ss_pred             EcCCCc----cc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          229 IRGHPY----HT-EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       229 ~~~~~~----~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      +...+.    |. ..+..-.|+.++..+.+.+++ .+.=|++.+....
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR~  336 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSRF  336 (344)
T ss_pred             EecCccccccccccccccccccCCCcccccccch-hhheeecccccee
Confidence            543221    22 236677777777666665543 4566666654443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.2e-08  Score=83.51  Aligned_cols=198  Identities=14%  Similarity=0.165  Sum_probs=125.2

Q ss_pred             CEEEEEEcCCCCcEEEEEeC-----------CCeEEEEEccCCeeeEeeccccC--c-EEEEEEecCCCEEEEEeCCCeE
Q 023018           66 EVYSVACSPTDATLVATGGG-----------DDKGFFWRINQGDWASEIQGHKD--S-VSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .|.-+.||| ..++|+|-+.           ...++|||+.+|.....+.....  . -.-+.||.+++++|.-.. ..|
T Consensus       251 ~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si  328 (698)
T KOG2314|consen  251 GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI  328 (698)
T ss_pred             CceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence            378899999 7888888543           25699999999998887765222  2 234689999999987765 569


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEEE--------------------
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--------------------  186 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--------------------  186 (288)
                      .||+.....++..-...-.+|....|+|.+.+||.=+-.     ..+.+..+.+++.+++                    
T Consensus       329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL  408 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL  408 (698)
T ss_pred             EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence            999876643332222233457777888877766642210     1222222222111110                    


Q ss_pred             -----------------------ee---------ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-CceeEEEc
Q 023018          187 -----------------------FS---------GHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKS-GENIHVIR  230 (288)
Q Consensus       187 -----------------------~~---------~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~-~~~~~~~~  230 (288)
                                             ++         .....|...+|-|.|+.+++-+.   ..++.+|-+.+ ......+.
T Consensus       409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                                   00         12345677789998888766543   34688888763 32222222


Q ss_pred             CCCccccCeEEEEEcCCCCEEEEE---eCCCcEEEEEcCC
Q 023018          231 GHPYHTEGLTCLTISADSTLALSG---SKDGSVHMVNITT  267 (288)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~t  267 (288)
                      ..  .....+.+.|+|.|++++++   |..|.+.++|+.-
T Consensus       489 ~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  489 EL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             hh--cccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            22  23557889999999998876   4578999999883

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.10  E-value=3.7e-08  Score=83.21  Aligned_cols=187  Identities=16%  Similarity=0.081  Sum_probs=120.8

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCcEE-----EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC--C-
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-----SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG--G-  150 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~-  150 (288)
                      .++.++.+|.|+.||..+++.+..+......+.     +...  .+..++.+..+|.+..+|..+++.+.......  + 
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            455566778888888888877666543222111     1111  12467788888999999999998765433110  0 


Q ss_pred             -C---EEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018          151 -G---VEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (288)
Q Consensus       151 -~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  224 (288)
                       .   ...+.-+|  .+..+++++.+|.++.||..+++.+..... .. .....  ..+..+++++.+|.|+.+|..+++
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence             0   00011111  355788888899999999999987766542 11 11222  246788888899999999999998


Q ss_pred             eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      .+.......  .....+...  .+..|++++.+|.|+++|..+|+.+..+.
T Consensus       301 ~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       301 ELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             EEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            766553211  111122122  35688899999999999999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.08  E-value=1e-06  Score=69.86  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=118.8

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-----ccCcEEEEEEecCCCEEEEEeCC--------CeEEE
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGLD--------GLVQI  133 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i  133 (288)
                      ...+++...++.+++ +.. +.+.++|+.+++.......     .....+++++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            666777732555554 444 4456669888765444332     23467899999999977766543        56777


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccE----EEEe---eccCCCeEEEEEcCCCCE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAY----LNMF---SGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~i~~~~~~p~~~~  205 (288)
                      ++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|++.....    ...+   ....+..-.+++..+|++
T Consensus       120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            7776 55433333 345678999999998665 556778899999853211    1222   222234788999999998


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSG  254 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  254 (288)
                      .++....+.|.+++.. |+.+..+...   ...+++++|. ++...|+..
T Consensus       198 ~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEE
Confidence            8888889999999987 8888877753   3478999994 665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=4.4e-09  Score=81.73  Aligned_cols=208  Identities=13%  Similarity=0.228  Sum_probs=136.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeecccc------------CcEEEEEEecCCC--EEEE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHK------------DSVSSLAFSMDGQ--LLAS  124 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~~--~l~~  124 (288)
                      ...|+++.|.. .+.+|++|...|+|.+|.-....     ....+++|.            ..|..+.|..++.  .++.
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45699999998 78899999999999999865432     223344443            4578888876543  5677


Q ss_pred             EeCCCeEEEEeCCCCce-------------------e--------EE---------------e-ccCCCCEEEEEEcCCC
Q 023018          125 GGLDGLVQIWDPSSGNL-------------------K--------CT---------------L-EGPGGGVEWVSWHPRG  161 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~-------------------~--------~~---------------~-~~~~~~i~~~~~~~~~  161 (288)
                      .+.|.+|++|.+.....                   +        .+               + ..|.-.|.++.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999998643200                   0        00               0 2244457788888877


Q ss_pred             CEEEEecCCCeEEEEECCccc---EEEEeeccC-----CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee----EE
Q 023018          162 HIVLAGSEDSTVWMWNADRAA---YLNMFSGHG-----SSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI----HV  228 (288)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~----~~  228 (288)
                      ..++++ .+=.|.+|++.-..   .+..++.|.     .-|++..|+| ....+..++..|.|++-|++....-    ..
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            776665 45789999886432   222233332     3578889999 4456666777999999999843210    11


Q ss_pred             E----cCC-----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEe
Q 023018          229 I----RGH-----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVCCLN  274 (288)
Q Consensus       229 ~----~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~-~~~~~~  274 (288)
                      +    .+.     ..-...|..+.|+++|+++++-+. -+|++||++.. .+++++
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            1    000     012346788999999999887543 48999999864 344443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=1.4e-08  Score=87.87  Aligned_cols=206  Identities=17%  Similarity=0.211  Sum_probs=151.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC------------CCEEEEEeCCCeEEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD------------GQLLASGGLDGLVQI  133 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~l~~~~~dg~i~i  133 (288)
                      .-.++.|+| .| ++|-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|-            .-+||++...|.|.+
T Consensus        17 N~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   17 NRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             cccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            356788998 54 6666665 57889999999999999999999999999862            125778888999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcC---CC-CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEEE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICT  208 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~~  208 (288)
                      ||...+..+..+..+..++..++|-+   +. ..|++-....++.+|+..+|+....+........|+.+.| +.+.+..
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            99999998888998999999999976   33 4667777778999999999999998887778888999999 6777777


Q ss_pred             EeCCCeEEEEeCCC-------CceeEEEcCCCc-------------cccC---------eEEEEEcCCCCEEEEEeCCCc
Q 023018          209 GSDDATLRVWNPKS-------GENIHVIRGHPY-------------HTEG---------LTCLTISADSTLALSGSKDGS  259 (288)
Q Consensus       209 ~~~dg~i~i~d~~~-------~~~~~~~~~~~~-------------~~~~---------v~~~~~~~~~~~l~~~~~dg~  259 (288)
                      .+..|.+.+-+.-.       ++..+....+..             +...         ...++|+|.-+-++...-...
T Consensus       174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            77788887776431       222222222100             0000         123567885443344445677


Q ss_pred             EEEEEcCCCcEEEEe
Q 023018          260 VHMVNITTGKVCCLN  274 (288)
Q Consensus       260 i~iwd~~t~~~~~~~  274 (288)
                      +.++|+.-..++...
T Consensus       254 llv~dle~~~~l~vv  268 (1062)
T KOG1912|consen  254 LLVFDLEYECCLAVV  268 (1062)
T ss_pred             eEEEcchhhceeEEE
Confidence            999999877766655

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=1.5e-07  Score=77.84  Aligned_cols=198  Identities=13%  Similarity=0.074  Sum_probs=136.6

Q ss_pred             CCEEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-----------C
Q 023018           65 DEVYSVACSPT-DATLVAT-----GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----------L  127 (288)
Q Consensus        65 ~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~  127 (288)
                      ..|...+|+|. ++..||.     .+..+++++|.+..+..+.+-.-....=..+.|++.|++|++-.           .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            45888889994 3334443     46678999999987766655443333335688999998765431           1


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      ...++|+++..... .......++|...+|.|.++.+++.+  ....+.++|++.. ....  ....+-..+.|+|.+++
T Consensus       254 esnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~  329 (561)
T COG5354         254 ESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERY  329 (561)
T ss_pred             cceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccE
Confidence            24678888774333 33225578999999999888766554  6788999999866 3333  34455577889999999


Q ss_pred             EEEEeC---CCeEEEEeCCCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEe------CCCcEEEEEcCCCcEE
Q 023018          206 ICTGSD---DATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGS------KDGSVHMVNITTGKVC  271 (288)
Q Consensus       206 l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~t~~~~  271 (288)
                      ++.++-   .|.+-+||....-... .+.+     ...+-+.|+|+++++.+..      .|..|.||++...+..
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            988765   4679999987544333 4432     3455678999999988764      3788999999865544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.07  E-value=7.1e-08  Score=76.00  Aligned_cols=183  Identities=17%  Similarity=0.170  Sum_probs=119.6

Q ss_pred             CCeEEEEEccCCeeeEeeccc--cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCE
Q 023018           86 DDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  163 (288)
                      +|.|..||..+++.+......  .....+. ..+.+.++++++.++.|+.||..+|+.+..+..... +.... ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccc
Confidence            688999999999988877531  1222211 233566788888999999999999998887765322 11111 123556


Q ss_pred             EEEecCCCeEEEEECCcccEEEEe-eccC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cC
Q 023018          164 VLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EG  238 (288)
Q Consensus       164 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~  238 (288)
                      +++++.++.++.+|.++++.+... ....   .....+.....+..++++..++.|..+|+++|+.+.......... ..
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778889999999999988874 3221   111222233347889999989999999999999987776532111 11


Q ss_pred             ------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          239 ------LTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       239 ------v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                            +..-....++ .++.++.+|.+..+|+.+|+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w  197 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW  197 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE
Confidence                  1222222244 77777778864444999998665

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=1.7e-08  Score=86.73  Aligned_cols=192  Identities=15%  Similarity=0.282  Sum_probs=127.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..-+++.||+..|.-+.|+. ..+.|-++..+|.|.+|-+-.++....+.  ..++.|.+++|+.+|..|...-.||.|.
T Consensus        62 smNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI  140 (1189)
T KOG2041|consen   62 SMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI  140 (1189)
T ss_pred             chhhhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence            44578999999999999998 66778899999999999998887655543  3567789999999999988888888876


Q ss_pred             EEeCCCCceeE-Eecc---------------------------------------------------CCCCEEEEEEc--
Q 023018          133 IWDPSSGNLKC-TLEG---------------------------------------------------PGGGVEWVSWH--  158 (288)
Q Consensus       133 i~d~~~~~~~~-~~~~---------------------------------------------------~~~~i~~~~~~--  158 (288)
                      +=.+..++... .+++                                                   ....|..+.|.  
T Consensus       141 VGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g  220 (1189)
T KOG2041|consen  141 VGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG  220 (1189)
T ss_pred             EEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence            64443221100 0000                                                   01123344442  


Q ss_pred             ------CCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCC
Q 023018          159 ------PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------TLRVWNPKSG  223 (288)
Q Consensus       159 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg---------~i~i~d~~~~  223 (288)
                            |+-..|+++..+|.+.+-.-.+......+. ..-.+..+.|+++|..|++++.+.         .|.+|..- |
T Consensus       221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G  298 (1189)
T KOG2041|consen  221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-G  298 (1189)
T ss_pred             ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-h
Confidence                  244566677666766664433322112222 235678899999999999987543         56777653 6


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                      ..+.++..   ....|++++|--.|-.++
T Consensus       299 ~i~gtlkv---pg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  299 HIVGTLKV---PGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             hheEEEec---CCceeeeeEEcCCceEEE
Confidence            66777765   456688888866554443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.6e-09  Score=85.34  Aligned_cols=221  Identities=19%  Similarity=0.165  Sum_probs=156.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeecc--ccCcEEEEEEe-cCCC---EEEEE-e
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQG--HKDSVSSLAFS-MDGQ---LLASG-G  126 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~-~~~~---~l~~~-~  126 (288)
                      .-+..+..|-..|.+++.+- ++.++++.+. |..++++|+.+-..+.-+.-  ..+.   +.|. ..|.   .|+++ .
T Consensus        44 EfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~  119 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLF  119 (558)
T ss_pred             eehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecc
Confidence            34556677888899999887 7888888777 99999999987554433221  1222   2232 2231   44444 3


Q ss_pred             CCCeEEEEeCCCCc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc------ccE---------EEEeec
Q 023018          127 LDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------AAY---------LNMFSG  189 (288)
Q Consensus       127 ~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~---------~~~~~~  189 (288)
                      .+|.+.++|-....  ....-.-|.++|..+.+.+.+..+++....|.|.-|....      ...         +..+..
T Consensus       120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccc
Confidence            67999999976443  2333345889999999999999999999999999998763      111         111223


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-----------------------------c-cccCe
Q 023018          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------------Y-HTEGL  239 (288)
Q Consensus       190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------~-~~~~v  239 (288)
                      .+....++.|+|++..+.+-+.|..|+++++++|..++.+....                             . .....
T Consensus       200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~  279 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVG  279 (558)
T ss_pred             cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccc
Confidence            45567899999999999999999999999999987654432110                             0 11234


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV  280 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~  280 (288)
                      +.+.|...+++|+-|+-=| |++.++.|+++++.+.....+
T Consensus       280 ~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~i  319 (558)
T KOG0882|consen  280 TNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAI  319 (558)
T ss_pred             ceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhh
Confidence            5678888899999887654 999999999999988544433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.2e-07  Score=81.48  Aligned_cols=201  Identities=14%  Similarity=0.165  Sum_probs=131.7

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCc-EEEEEEecCCCEEEEEeCCC-----eEEEEeCCCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDG-----LVQIWDPSSG  139 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~  139 (288)
                      .|+|  |++ ++..+|.|+.+|.|.+.+- ..+.+..++.+... |..+....+..+|++.+.|+     .++||++..-
T Consensus        27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4544  455 6678899999999888773 34455677777766 44443333445777776554     5899998632


Q ss_pred             ------cee--EEecc-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEECC---c-ccEEEEeeccCCCeEEEEEcCC
Q 023018          140 ------NLK--CTLEG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---R-AAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       140 ------~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                            ..+  .++..     ...++.+++.+.+-+.+|+|-.+|.|.++.-.   . +....-......+|+.+.+..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                  222  11111     25678999999998999999999999998532   1 2222222235679999999988


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          203 GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..++.+..-..|.+|.+....+ ...+..   ++.++.|..+++....+++++ +..+.+|+....++...+
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~---~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDN---NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeecc---CCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            88733333456799999874332 222333   777888988887544344443 457999998876666555

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=5.1e-09  Score=90.01  Aligned_cols=179  Identities=20%  Similarity=0.333  Sum_probs=130.7

Q ss_pred             CEEEEEEcCCC-CcEEEEEeCCCeEEEEEccC---CeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc
Q 023018           66 EVYSVACSPTD-ATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        66 ~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  140 (288)
                      .|-.+.|+|.. ..+-++......-.+|++..   ...-..+.+|...|+.+.|+|+.. .+++++.|..+..||+++..
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            36667787742 23444444456677899864   334456778999999999999765 78999999999999998764


Q ss_pred             -eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 023018          141 -LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRV  217 (288)
Q Consensus       141 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i  217 (288)
                       .+..+..-......++|+.....+++.+....|.+||++.+ .++..+++|...|..+.|.. -...+.+++.||+|++
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence             45555555566788999987667777777789999999976 67788888988999998876 3345788999999999


Q ss_pred             EeCCCCce--eEEEcCCCccccCeEEEEEcCCC
Q 023018          218 WNPKSGEN--IHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       218 ~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                      ||......  .+++.    ...+|..-++.|-|
T Consensus       229 w~y~kSt~e~~~~vt----t~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  229 WDYSKSTTESKRTVT----TNFPIWRGRYLPFG  257 (1081)
T ss_pred             ecccccccccceecc----ccCcceeccccccC
Confidence            99764432  22222    34566666666633

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.99  E-value=1.8e-07  Score=77.40  Aligned_cols=198  Identities=16%  Similarity=0.136  Sum_probs=136.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCC---------------eEEEEEccCCeeeEeeccccCc--EE-EEEEecCCCEEEEEe
Q 023018           65 DEVYSVACSPTDATLVATGGGDD---------------KGFFWRINQGDWASEIQGHKDS--VS-SLAFSMDGQLLASGG  126 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~  126 (288)
                      ..|.-+.|+| .+.+|.+-+..+               .+.+||..++..+..+.....+  .+ -+.|+-+.+++|-. 
T Consensus        72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            4588899999 888998875544               4999999999999998876655  44 67888888776544 


Q ss_pred             CCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCC--CEEEE-----ecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRG--HIVLA-----GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (288)
                      ....++|+++...-....+.. ....|....|+|.+  ..|++     ....+.+++|.+..++.+.+-.-....-..+.
T Consensus       150 v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         150 VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            345799999722211111211 12468889999953  34443     45678999999987776655444444456789


Q ss_pred             EcCCCCEEEEEe-----------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEEc
Q 023018          199 FTPDGKTICTGS-----------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS--GSKDGSVHMVNI  265 (288)
Q Consensus       199 ~~p~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~  265 (288)
                      |.+.|.+|++--           ....+++++++... +.....   ..++|...+|.|.++.+++  |-.+-.+.++|+
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceecc---ccccceeeeecccCCceeEEecccccceeeccc
Confidence            999999875421           13468888887332 222212   5789999999997766554  446788999999


Q ss_pred             CCC
Q 023018          266 TTG  268 (288)
Q Consensus       266 ~t~  268 (288)
                      +..
T Consensus       306 r~N  308 (561)
T COG5354         306 RGN  308 (561)
T ss_pred             ccc
Confidence            875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.98  E-value=4.3e-07  Score=70.17  Aligned_cols=164  Identities=17%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-------ccCcEEEEEEecCC---C---EEEEEeCCCeEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------HKDSVSSLAFSMDG---Q---LLASGGLDGLVQ  132 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~i~~~~~~~~~---~---~l~~~~~dg~i~  132 (288)
                      .=..++|+| +..+||.+...|+|+++|+.... +..+..       -...|..|.|.+..   +   .|++-...|.++
T Consensus        45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             hheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            356799999 88899999999999999987533 333321       23466777775422   1   455666778777


Q ss_pred             EEeCCC-----CceeEEecc---CCCCEEEEEEcCCCCEEEEecCC----C-------eEEEEECCcccEE---------
Q 023018          133 IWDPSS-----GNLKCTLEG---PGGGVEWVSWHPRGHIVLAGSED----S-------TVWMWNADRAAYL---------  184 (288)
Q Consensus       133 i~d~~~-----~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d----g-------~i~i~d~~~~~~~---------  184 (288)
                      =|-+..     .+..+.+..   ....|.++.|+|..++|++|+..    +       -+..|.+-++.+.         
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            666432     233333332   34579999999998888887642    1       2556654322110         


Q ss_pred             ------------E-----Ee---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Q 023018          185 ------------N-----MF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG  231 (288)
Q Consensus       185 ------------~-----~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (288)
                                  +     .+   ......|..|..||+|..|++...+|.|.+|++.+.........
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence                        0     00   11345789999999999999999999999999988776666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.2e-07  Score=82.60  Aligned_cols=158  Identities=17%  Similarity=0.313  Sum_probs=116.1

Q ss_pred             eeEeecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC-----C
Q 023018           57 THIFSGHSDEVYSVACSPT------------DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-----G  119 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~-----~  119 (288)
                      ...|..|.+.|.-..+.-.            .+.++++|+.||+|.|-.+.+.+...++. ...++.+++++|+     .
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~s  129 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQS  129 (846)
T ss_pred             eeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhh
Confidence            3455678888777766552            48899999999999999999988777776 4578999999997     4


Q ss_pred             CEEEEEeCCCeEEEEeCC--CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC----
Q 023018          120 QLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----  193 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----  193 (288)
                      +.+++|+..| +.++.-.  ..+....+....++|.++.|.  |+++|-++.+| |++||+..++.+..+......    
T Consensus       130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e  205 (846)
T KOG2066|consen  130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPE  205 (846)
T ss_pred             hheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcc
Confidence            5899999888 7777532  112222456677899999995  78888888766 899999988877666543332    


Q ss_pred             --eEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018          194 --VTCGDFTPDGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       194 --i~~~~~~p~~~~l~~~~~dg~i~i~d~~  221 (288)
                        ...+.|.+. ..|+.|-. .+|+|..++
T Consensus       206 ~fpphl~W~~~-~~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  206 LFPPHLHWQDE-DRLVIGWG-DSVKICSIK  233 (846)
T ss_pred             cCCCceEecCC-CeEEEecC-CeEEEEEEe
Confidence              245677754 45666654 468888877

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.95  E-value=2.4e-08  Score=87.90  Aligned_cols=149  Identities=18%  Similarity=0.328  Sum_probs=117.7

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---------CCeEEEEeC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDP  136 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~  136 (288)
                      .|+-++.   +++++.+|...|+|.+-|..+.+.++++..|.+.|.++..  .|+.|++|+.         |..|+|||+
T Consensus       179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            4555554   5578899999999999999999999999999999987555  7889998875         456899999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEEC---Ccc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNA---DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~---~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +..+.+.-+..+.++ .-+.|+|. ...+++++..|...+.|.   .+. .-+..+....+.+..+++++.++.++.|..
T Consensus       254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            988877766666553 56788884 457888888899999983   333 123333344556999999999999999999


Q ss_pred             CCeEEEEeC
Q 023018          212 DATLRVWNP  220 (288)
Q Consensus       212 dg~i~i~d~  220 (288)
                      +|.|.+|--
T Consensus       333 ~g~v~~wa~  341 (1118)
T KOG1275|consen  333 EGHVNLWAD  341 (1118)
T ss_pred             cCcEeeecC
Confidence            999999963

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.94  E-value=5.7e-09  Score=57.07  Aligned_cols=39  Identities=38%  Similarity=0.819  Sum_probs=36.8

Q ss_pred             ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      ++++.++.+|..+|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.93  E-value=2e-06  Score=68.37  Aligned_cols=194  Identities=18%  Similarity=0.184  Sum_probs=130.1

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEE-----eCCCeEEEEEcc-CCeeeEeeccccCcEEEEEEecCCCEEEEEeC-
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATG-----GGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-  127 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  127 (288)
                      .+-+.|.||      -.|++ ++++|++.     +..|.|-|||.. +.+.+..+..|.-.-..+.+.|+++.|+++-. 
T Consensus        47 ~~gRHFyGH------g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen   47 PPGRHFYGH------GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG  119 (305)
T ss_pred             CCCCEEecC------EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence            444566666      46888 66677664     446899999998 67788888877666678999999988877621 


Q ss_pred             -----------------CCeEEEEeCCCCceeEEec----cCCCCEEEEEEcCCCCEEEEecCCC-------eEEEEECC
Q 023018          128 -----------------DGLVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSEDS-------TVWMWNAD  179 (288)
Q Consensus       128 -----------------dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~  179 (288)
                                       +-.+...|..+|+.+....    .|...|+.+++.++|..++..-..|       -|.++.. 
T Consensus       120 I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-  198 (305)
T PF07433_consen  120 IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-  198 (305)
T ss_pred             CccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-
Confidence                             2345556777787766633    2666899999999987766654433       2444433 


Q ss_pred             cccEEEEe-------eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE
Q 023018          180 RAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA  251 (288)
Q Consensus       180 ~~~~~~~~-------~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  251 (288)
                       +..+..+       ......+-+|++++++..+++.+ ..+.+.+||..++..+.....     ..+..++..+++ ++
T Consensus       199 -g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~  271 (305)
T PF07433_consen  199 -GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FL  271 (305)
T ss_pred             -CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eE
Confidence             2222222       23457889999999998875554 677899999999988766643     335566666665 55


Q ss_pred             EEEeCCCcEEEEE
Q 023018          252 LSGSKDGSVHMVN  264 (288)
Q Consensus       252 ~~~~~dg~i~iwd  264 (288)
                      ++. ..|.+....
T Consensus       272 ~ss-G~G~~~~~~  283 (305)
T PF07433_consen  272 VSS-GQGQLIRLS  283 (305)
T ss_pred             EeC-CCccEEEcc
Confidence            554 345544433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=4.6e-09  Score=57.44  Aligned_cols=38  Identities=42%  Similarity=0.843  Sum_probs=36.1

Q ss_pred             eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        98 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      +++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.93  E-value=3.1e-07  Score=82.16  Aligned_cols=140  Identities=13%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             CEEEEE-eCCCeEEEEeCCCCceeEEeccCCCC-EEEEEEcC-----CCCEEEEecCCCeEEEEECCccc--EEEE-ee-
Q 023018          120 QLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA--YLNM-FS-  188 (288)
Q Consensus       120 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~-  188 (288)
                      ++|+.. .....|+-.|+..|+.+..+..+... |..++-..     .....++|-.+..+..||.|-..  ++.. .+ 
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344433 35678999999999999999877653 44443221     13356777788999999998642  2211 11 


Q ss_pred             -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                       ......+|++-+.+| +||+|+.+|.||+||- .|... ..+++   ...+|..|..+.||++|++.| +..+.++++
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~---lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG---LGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC---CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence             234567787777654 7999999999999994 34332 23333   678999999999999988765 557777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.93  E-value=4.4e-06  Score=65.35  Aligned_cols=203  Identities=12%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      +.+.+-...+..++|+|+.+.++++....+.|..++. +++.+.++.-. .+..-.+++..++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3455666679999999977889999999999988886 47777776533 245678889877776666666899999988


Q ss_pred             CCCc------eeEEec-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---ccEEEEe--------eccCCCe
Q 023018          137 SSGN------LKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMF--------SGHGSSV  194 (288)
Q Consensus       137 ~~~~------~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~~~i  194 (288)
                      ....      ....+.     .+...+-.++|+|.++.|+++-...-..+|.+..   ...+...        ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            4321      111121     2445689999999888777776655566665543   2111111        1133457


Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc------cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          195 TCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       195 ~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      .+++++|. +.+++.+..+..|.++| .+|+.+..+.-...      .-...-.++|.++|++.++ ++.+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            89999994 55667777788899999 56777665543221      1235778999999976555 466666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.8e-07  Score=78.25  Aligned_cols=179  Identities=13%  Similarity=0.199  Sum_probs=125.2

Q ss_pred             EEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018           89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus        89 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  168 (288)
                      ...|+.........-...+-.-+-+.|||.|.||++--.-| |.+|--.+...+++|. |. .+.-+.|||..++|++-+
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s  268 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYS  268 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEec
Confidence            45566544322222222223346789999999999988766 8899777766677665 43 489999999999999865


Q ss_pred             C-----------CCeEEEEECCcccEEEEeeccCC--Ce-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc
Q 023018          169 E-----------DSTVWMWNADRAAYLNMFSGHGS--SV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY  234 (288)
Q Consensus       169 ~-----------dg~i~i~d~~~~~~~~~~~~~~~--~i-~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  234 (288)
                      .           ...+.|||+++|...+.+.....  .+ .-..||.+++++|.-.. ..|.||+..+..   .+.....
T Consensus       269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~---lld~Ksl  344 (698)
T KOG2314|consen  269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM---LLDKKSL  344 (698)
T ss_pred             CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee---eeccccc
Confidence            3           25799999999998888775222  22 34679999999987765 568999876533   3333333


Q ss_pred             cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEe
Q 023018          235 HTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~t~~~~~~~  274 (288)
                      ...+|....|+|.+++|+--..     -.++.+-.+.+++.+++.
T Consensus       345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~  389 (698)
T KOG2314|consen  345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK  389 (698)
T ss_pred             CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence            5577889999999888875432     246777788887777654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=1.6e-08  Score=78.70  Aligned_cols=199  Identities=17%  Similarity=0.260  Sum_probs=133.3

Q ss_pred             CEEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCe------------------------------------------eeEe
Q 023018           66 EVYSVACSP-TDATLVATGGGDDKGFFWRINQGD------------------------------------------WASE  102 (288)
Q Consensus        66 ~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~------------------------------------------~~~~  102 (288)
                      .|..+.|.. .+...+...+.|.+|++|.+....                                          +.+.
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            578888875 344567778889999999985320                                          0001


Q ss_pred             e-ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee---EEeccCC-----CCEEEEEEcCC-CCEEEEecCCCe
Q 023018          103 I-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---CTLEGPG-----GGVEWVSWHPR-GHIVLAGSEDST  172 (288)
Q Consensus       103 ~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~  172 (288)
                      + ..|.-.|.++.|+.+...++++ .|=.|.+|++.-....   .-++.|.     .-|++..|+|. ...+...+..|.
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~  245 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE  245 (460)
T ss_pred             ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence            1 3577788999999888877775 4778999998643322   2223332     34788899994 456777777899


Q ss_pred             EEEEECCcccEEE----------------EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEEcCCCc-
Q 023018          173 VWMWNADRAAYLN----------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPY-  234 (288)
Q Consensus       173 i~i~d~~~~~~~~----------------~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~-  234 (288)
                      |++-|+|+..+..                -+..-.+.|..+.|+++|+++++-+. -+|+|||.+.. .++.++..+.. 
T Consensus       246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l  324 (460)
T COG5170         246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL  324 (460)
T ss_pred             EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence            9999998643211                11123457889999999999988664 57999998754 45555543211 


Q ss_pred             --------cccCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          235 --------HTEGL---TCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       235 --------~~~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                              ....|   ..+.|+-+...+++|+.....-+|-+.
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                    12222   346778788888888888777777643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.2e-07  Score=76.32  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=72.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI  133 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  133 (288)
                      ++.+.+.+|...|..++|+|....++..++.+..|+|.|+.+...+..+..+ ..+++++|.-+.. +|..|...|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            4455778889999999999976668889999999999999999988888877 7889999987654 7888889999999


Q ss_pred             EeCCCC
Q 023018          134 WDPSSG  139 (288)
Q Consensus       134 ~d~~~~  139 (288)
                      ||++..
T Consensus       263 yD~R~~  268 (463)
T KOG1645|consen  263 YDMRQP  268 (463)
T ss_pred             EEccCC
Confidence            998754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.89  E-value=7e-07  Score=81.20  Aligned_cols=199  Identities=13%  Similarity=0.146  Sum_probs=133.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC----CC--
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP----SS--  138 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~----~~--  138 (288)
                      +.|.++.|.- +...++.+...|.|.+-|..+.... ....-...|.+++|+|+...++..+..+++.+-.-    -.  
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            5799999988 6677778888899999987765432 23335678999999999999998888787776432    11  


Q ss_pred             -----------------CceeEEeccC---------------------CCCEEEEEEcCCCCEEEEe-----cCCCeEEE
Q 023018          139 -----------------GNLKCTLEGP---------------------GGGVEWVSWHPRGHIVLAG-----SEDSTVWM  175 (288)
Q Consensus       139 -----------------~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i  175 (288)
                                       |+....|++.                     .+.=.+|.|--+|.++++.     .....|++
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence                             1111122211                     1122458999999999983     33378999


Q ss_pred             EECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeEEEcCC-CccccCeEEEEEcCCCCEE
Q 023018          176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLA  251 (288)
Q Consensus       176 ~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l  251 (288)
                      ||-+ +.+-.+-....+--.+++|-|.|..+++-.   .++.|.+|.. +|-.-..+... +.....+..++|+.++.+|
T Consensus       227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCce
Confidence            9976 543332222334447899999999988754   4557889974 44333322211 1133348999999999999


Q ss_pred             EE---EeCCCcEEEEEcCC
Q 023018          252 LS---GSKDGSVHMVNITT  267 (288)
Q Consensus       252 ~~---~~~dg~i~iwd~~t  267 (288)
                      ++   ......|++|-+.+
T Consensus       305 Av~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeecccccceEEEEEecC
Confidence            87   44455599998876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.88  E-value=6.5e-07  Score=75.82  Aligned_cols=223  Identities=18%  Similarity=0.207  Sum_probs=132.3

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCe--
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGD---DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGL--  130 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~--  130 (288)
                      .+.+..-...+..-+|+|....+.+..-..   ..++++++.+++....+. ..+.-....|+|+|++|+.+ ..||.  
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            344444456677788998555444332222   459999999876555544 33334567899999976655 45664  


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      |.++|+..+. ...+....+.-..-.|+|+|+.|+..+. .|  .|.+++...+.. ..+......-..-.|+|+|++|+
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEE
Confidence            6666777665 3335444444457789999998887764 34  477777766554 33333333333678999999998


Q ss_pred             EEeCC-Ce--EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCcEEEEecceEEEEE
Q 023018          208 TGSDD-AT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKVCCLNFQYTCVAY  282 (288)
Q Consensus       208 ~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~t~~~~~~~~~~~~~~~  282 (288)
                      ..+.. |.  |.+.|+.++...+.+..    ......-.|.+++..+...+..  +.+..--..+++....+......+.
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~----~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~~~~~~  417 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGGKIRILTS----TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLADGDVR  417 (425)
T ss_pred             EEeccCCceeeEEeccCCCCcEEEccc----cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEeccCccee
Confidence            77643 44  77788877765555542    2333445788888776654332  2333323334554443333334444


Q ss_pred             eecc
Q 023018          283 DLDF  286 (288)
Q Consensus       283 ~~df  286 (288)
                      .|+|
T Consensus       418 ~p~w  421 (425)
T COG0823         418 VPAW  421 (425)
T ss_pred             cccc
Confidence            4444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.88  E-value=5.3e-06  Score=69.71  Aligned_cols=204  Identities=14%  Similarity=0.161  Sum_probs=121.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-------------------------------------------eEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------------------------------------------ASE  102 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~~~  102 (288)
                      .|+.++|.+ ...-|++|...|.|.||.+...+.                                           ...
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            589999999 667888999999999998753211                                           111


Q ss_pred             eccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec--c------CCCCEEEEEEcC-----CC---CEEEE
Q 023018          103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--G------PGGGVEWVSWHP-----RG---HIVLA  166 (288)
Q Consensus       103 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~---~~l~~  166 (288)
                      +....++|++++.+. =.++|+|..+|.+.|.|++....+..-.  .      ....++++.|..     ++   -.+++
T Consensus        82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            123367899999874 4499999999999999998887776522  1      234678888863     22   47899


Q ss_pred             ecCCCeEEEEECC--c-cc----EEEEeeccCCCeEEEE-EcCC-C-------------------CEEEEEeCCCeEEEE
Q 023018          167 GSEDSTVWMWNAD--R-AA----YLNMFSGHGSSVTCGD-FTPD-G-------------------KTICTGSDDATLRVW  218 (288)
Q Consensus       167 ~~~dg~i~i~d~~--~-~~----~~~~~~~~~~~i~~~~-~~p~-~-------------------~~l~~~~~dg~i~i~  218 (288)
                      |+..|.+.+|.+.  . +.    .......+.++|..+. ++.+ |                   ..+++...+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            9999999999774  1 21    1122223556665554 3221 1                   123444447789999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEc-----CCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTIS-----ADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.+.+.......   .......+.+-     ..+..|++-..+|.|++|.+..-+.+...
T Consensus       241 ~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  241 KPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             -TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             eCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            9987776555442   22223334442     35677888899999999999998888765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.84  E-value=7.8e-10  Score=93.50  Aligned_cols=199  Identities=21%  Similarity=0.278  Sum_probs=134.1

Q ss_pred             CCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEec-CCCEEEEEe----CCCeEEEEeC
Q 023018           65 DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGG----LDGLVQIWDP  136 (288)
Q Consensus        65 ~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~i~i~d~  136 (288)
                      .-+.|+++.-. +..++++|..+|.|.+-.++....  ....+++..++++++|++ |...||+|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            45778887653 346899999999999988875432  234567888999999998 556777773    4678999999


Q ss_pred             CCC----ceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEEEEEcC-CCCEEEEE
Q 023018          137 SSG----NLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTP-DGKTICTG  209 (288)
Q Consensus       137 ~~~----~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~p-~~~~l~~~  209 (288)
                      .++    +....|.. ......+++|..+.+.+++|.....+.++|+|... ....+  ....+..+...| .+.++++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            876    11122222 33456689999888899999998999999998542 12222  234566777888 77788776


Q ss_pred             eCCCeEEEEe-CCCCce-eEEEc-CCCccccCeEEEEEcCCC-CEEEEE-eCCCcEEEEEcC
Q 023018          210 SDDATLRVWN-PKSGEN-IHVIR-GHPYHTEGLTCLTISADS-TLALSG-SKDGSVHMVNIT  266 (288)
Q Consensus       210 ~~dg~i~i~d-~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~-~~dg~i~iwd~~  266 (288)
                      . ||.|.+|| .++-+. +..+. ........+..++|+|.. ..|++. -..++|+++++.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            5 99999999 443222 22221 111122358899999933 234444 345789999985

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.83  E-value=7e-07  Score=80.00  Aligned_cols=141  Identities=17%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             cEEEEE-eCCCeEEEEEccCCeeeEeeccccCc-EEEEEEec-----CCCEEEEEeCCCeEEEEeCCCCc--eeEE-e--
Q 023018           78 TLVATG-GGDDKGFFWRINQGDWASEIQGHKDS-VSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGN--LKCT-L--  145 (288)
Q Consensus        78 ~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~--  145 (288)
                      .+|+.. .....|+-.|+..|+.+.....+... |..++-..     ....-+.|-.+..+..||.+-..  ++.. .  
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            344433 34577888999999999998877644 55443221     12345667778889999988542  2211 1  


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      .......+|++-..+| +||+|+.+|.|++||--..+....+.+.+.+|..|..+.+|++|++.+ +..|.+++.
T Consensus       574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            1234457777777665 899999999999999533344445667789999999999999988766 455667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.80  E-value=1.6e-06  Score=73.69  Aligned_cols=193  Identities=13%  Similarity=0.102  Sum_probs=119.5

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccC----------cEE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD----------SVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      ..+++++.+|.|.-+|..+++.+-.......          .+. .+..  .+..++.++.+|.++.+|..+|+.+.+..
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            3566777789999999999887766542210          000 0111  34567788889999999999999887766


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeE-EEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~p--~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ...........  .+..+++++.+|.++.+|..+++.+..+......+. ...-+|  .+..++.++.+|.+..+|..+|
T Consensus       148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G  225 (394)
T PRK11138        148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG  225 (394)
T ss_pred             CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence            44321111112  245677788889999999999998877753211110 000122  2346777888999999999998


Q ss_pred             ceeEEEcCCCccc-c---CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          224 ENIHVIRGHPYHT-E---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       224 ~~~~~~~~~~~~~-~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.+.......... .   ....+..+|  .+..+++++.+|.++.+|+.+|+.+...
T Consensus       226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            8765543211000 0   011111222  2445666677888888888888776543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.9e-05  Score=66.67  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=148.9

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeE
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKC  143 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  143 (288)
                      -..++.++.+.+..++...+..|.+.|..+.+.......-. .-..++++++++.+.++..   ++++.+.|..+++...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            35677777566677777777899999987777666655333 4467999999987766654   6899999999998888


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEE-E---eeccCCCeEEEEEcCCCCEEEEEeCC---CeE
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-M---FSGHGSSVTCGDFTPDGKTICTGSDD---ATL  215 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~~p~~~~l~~~~~d---g~i  215 (288)
                      .......+ ..+++.|+|..++.+. .++.|.+.|........ .   ..........+.++|++.++++....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            86554444 8899999999666665 67999999977665443 1   11123345678899999987776554   589


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.|..++.......... .. ....+..+|+|..+.+.. ..+.+.+.|..+.+.....
T Consensus       234 ~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         234 LKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             EEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence            999998877655422111 22 456789999999888774 4589999999998888865

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=4.1e-07  Score=79.91  Aligned_cols=109  Identities=15%  Similarity=0.264  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCcEEEEEeC----CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           68 YSVACSPTDATLVATGGG----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      +-.+|+| ...++|+++.    .|.|.||- .+|++..... -.-.+++++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus        19 ti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            3356898 6667777643    47788875 4555443322 12235679999988889999999999999988877777


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  179 (288)
                      ....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            777899999999999999999999999999999764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=1.8e-06  Score=73.41  Aligned_cols=185  Identities=14%  Similarity=0.084  Sum_probs=120.3

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEE-EE
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VS  156 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-~~  156 (288)
                      .++.++.+|.++.+|..+++.+.+..... .+.+ ...  .+..+++++.+|.|..+|..+|+.+..+......+.. ..
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            55667788999999999998877765332 2221 112  2446777888999999999999988777543111100 00


Q ss_pred             EcC--CCCEEEEecCCCeEEEEECCcccEEEEeeccCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCce
Q 023018          157 WHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-------SVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       157 ~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~p--~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      -+|  .+..++.++.+|.+..+|..+++.+........       ....+..+|  .+..+++++.+|.+..+|+.+|+.
T Consensus       199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence            112  234577788889999999999887655431110       011112233  356788888899999999999987


Q ss_pred             eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      +......    . ...+..  .+..|+.++.+|.++.+|..+|+.+..
T Consensus       279 ~W~~~~~----~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        279 VWKREYG----S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             EEeecCC----C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            6654321    1 111222  456777788899999999999987654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=6e-09  Score=91.42  Aligned_cols=167  Identities=17%  Similarity=0.190  Sum_probs=127.0

Q ss_pred             eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC--eEEEE
Q 023018           99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMW  176 (288)
Q Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~  176 (288)
                      ...++..|....+|++|+...+.|++|+..|.|++|++.+|.......+|.++++.+.-+.+|..+++.+.-.  -..+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            3445677888999999999999999999999999999999999999999999999999998998777765533  46799


Q ss_pred             ECCc-ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCccccCeEEEEEcCCCCEEEEE
Q 023018          177 NADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       177 d~~~-~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ++.+ +.+.++|..    -.++.|+..-+.-+.|+......+||+.++.++.++ .........-+...|+|+..+++  
T Consensus      1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred             ccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence            9865 345555542    346788875555555666667899999999877663 22222233346788999887776  


Q ss_pred             eCCCcEEEEEcCCCcEEEEe
Q 023018          255 SKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~  274 (288)
                       .||  .+||++..+.+..+
T Consensus      1247 -ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhh
Confidence             344  78999988777655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=5.6e-07  Score=79.08  Aligned_cols=187  Identities=15%  Similarity=0.214  Sum_probs=128.0

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE---
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC---  143 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---  143 (288)
                      +++++|+| ...+|+.|-.-|.+.+|...+.+.......|..+|.-+.|+++|..++++..-|.+.+|....-..+.   
T Consensus        62 atSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~  140 (1416)
T KOG3617|consen   62 ATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN  140 (1416)
T ss_pred             hhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence            56799999 78899999999999999998877777777799999999999999999999999999999865211000   


Q ss_pred             ---------------EeccC---------------CCCE------------EEE--EEcCCCCEEEEecCCCeEEEEECC
Q 023018          144 ---------------TLEGP---------------GGGV------------EWV--SWHPRGHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       144 ---------------~~~~~---------------~~~i------------~~~--~~~~~~~~l~~~~~dg~i~i~d~~  179 (288)
                                     ++...               ...+            .++  .=.|+|..++.++.+|+|+-.|-.
T Consensus       141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC
Confidence                           01000               0000            000  113467788889999999888732


Q ss_pred             cccEEEEe---------------------------------------------e--------------------------
Q 023018          180 RAAYLNMF---------------------------------------------S--------------------------  188 (288)
Q Consensus       180 ~~~~~~~~---------------------------------------------~--------------------------  188 (288)
                      . ++....                                             .                          
T Consensus       221 g-~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg  299 (1416)
T KOG3617|consen  221 G-RQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG  299 (1416)
T ss_pred             C-cEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence            1 110000                                             0                          


Q ss_pred             -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-------GENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                       .....+.|+++..-+..|..|...|.+.+|--..       +.....+.+.....+.|+.+.|.|--..+++.+
T Consensus       300 ~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  300 LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence             0134578899998888999999999999995321       123344544444567799999998555544443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.74  E-value=2e-05  Score=60.48  Aligned_cols=150  Identities=11%  Similarity=0.073  Sum_probs=105.1

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC
Q 023018           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG  151 (288)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  151 (288)
                      ..++...+++.|+..+.+.--|..++....... ....|.+-+.- -|++++.|+..|.+++.+..+|.....+..-..-
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            334456788889999999999999887665533 23333333222 4678999999999999999999877776644332


Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      -......+++..+..|+.|++.+..|.++..++.+.+-..+...+-+..|-...|+.+...|.+.--..+.+
T Consensus        96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen   96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            223445678899999999999999999999888887655444455556664445666666676655554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.70  E-value=1.4e-06  Score=73.86  Aligned_cols=112  Identities=18%  Similarity=0.267  Sum_probs=80.4

Q ss_pred             EEEEEEecCC-CEEEEE----eCCCe----EEEEeCCCCceeEE--e-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE
Q 023018          110 VSSLAFSMDG-QLLASG----GLDGL----VQIWDPSSGNLKCT--L-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (288)
Q Consensus       110 i~~~~~~~~~-~~l~~~----~~dg~----i~i~d~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  177 (288)
                      ..++.|+... ..+.+.    +.+|.    -.+|++..++....  . -...+.+.+.+++|+...++.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            3567777533 344433    23443    34677665543321  1 13566799999999999999999999999999


Q ss_pred             CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            8766333  2234566789999999999999999999999998643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.64  E-value=6.8e-06  Score=69.81  Aligned_cols=114  Identities=13%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             EEEEEEcC-CCCEEEEe----cCCCe----EEEEECCcccE--EEEe-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          152 VEWVSWHP-RGHIVLAG----SEDST----VWMWNADRAAY--LNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       152 i~~~~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~--~~~~-~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      ..++.|+- +...+.+.    +.+|.    -.+|++...+.  +... -...+.+.+.+++|+...|+.|+.||.|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35566665 34444442    22333    34566654432  1111 13677899999999999999999999999999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      ...+..... .    ..-.++.++|+|+|.++++|+..|.+.+||+.-...
T Consensus       288 ~~~~~t~~~-k----a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  288 TTRGVTLLA-K----AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cCCCeeeee-e----ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            876633322 2    345678899999999999999999999999975443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.63  E-value=3.3e-05  Score=67.47  Aligned_cols=194  Identities=15%  Similarity=0.211  Sum_probs=122.7

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccC------cEE--EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG  150 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  150 (288)
                      .++.++.++.|+-.|..+++.+-.+.....      .+.  .+... ++..++.++.+|.|+-+|..+++.+..+.....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~  141 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ  141 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence            455677789999999999887766643221      110  01111 225788888899999999999998887764322


Q ss_pred             C--EEEEEEcC--CCCEEEEec---------CCCeEEEEECCcccEEEEeeccCCC--------------------e-EE
Q 023018          151 G--VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGSS--------------------V-TC  196 (288)
Q Consensus       151 ~--i~~~~~~~--~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~--------------------i-~~  196 (288)
                      .  -..+.-+|  .+..++.++         .+|.++.+|..+++.+..+......                    + ..
T Consensus       142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~  221 (488)
T cd00216         142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS  221 (488)
T ss_pred             cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence            0  01111122  224555554         3688999999999988776542110                    1 12


Q ss_pred             EEEcCCCCEEEEEeCCC------------------eEEEEeCCCCceeEEEcCCCccc----cCeEEEEEc----CCCC-
Q 023018          197 GDFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPYHT----EGLTCLTIS----ADST-  249 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~----~~v~~~~~~----~~~~-  249 (288)
                      .++.+.+..++.++.++                  .|.-+|+.+|+.+..+.... +.    .......+.    -++. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP-HDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC-CCCcccccCCCCeEEeccccCCCe
Confidence            34445567788887665                  79999999999887765321 10    000001111    1333 


Q ss_pred             --EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          250 --LALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       250 --~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                        .+++++.+|.++.+|..+|+++...
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEe
Confidence              6778889999999999999998765

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.59  E-value=1.3e-05  Score=73.35  Aligned_cols=158  Identities=19%  Similarity=0.346  Sum_probs=103.8

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc----C-------------------CeeeEeeccc-------------
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN----Q-------------------GDWASEIQGH-------------  106 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~----~-------------------~~~~~~~~~~-------------  106 (288)
                      -.+.|.+++|+| ++..++..+..+++.+-...    .                   |+....+.+.             
T Consensus       108 vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  108 VDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            356799999999 78888888877777665431    0                   0101112110             


Q ss_pred             --------cCcEEEEEEecCCCEEEEEe----CC-CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec---CC
Q 023018          107 --------KDSVSSLAFSMDGQLLASGG----LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---ED  170 (288)
Q Consensus       107 --------~~~i~~~~~~~~~~~l~~~~----~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d  170 (288)
                              ...=+.+.|--+|.++|+..    .+ ..|+|||.. |..-..-....+.-.+++|-|.|.++++-.   .+
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd  265 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD  265 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCC
Confidence                    11123588999999998842    23 799999976 554444344445567899999999998864   45


Q ss_pred             CeEEEEECCccc----EEEEeeccCCCeEEEEEcCCCCEEEE---EeCCCeEEEEeCCCC
Q 023018          171 STVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICT---GSDDATLRVWNPKSG  223 (288)
Q Consensus       171 g~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~p~~~~l~~---~~~dg~i~i~d~~~~  223 (288)
                      +.|.+|.- +|.    ....+......+..++|+.++..|++   ......|++|-+.+.
T Consensus       266 ~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  266 SDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            67888863 332    22223333445899999999999987   444556999987654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=0.0002  Score=60.51  Aligned_cols=207  Identities=14%  Similarity=0.174  Sum_probs=134.9

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ....+...|.+....++-.....+...+............-...-..+++++.+..++ +...+..|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            3455666664434444443333454444442221111111112235677888887544 444568999999888877776


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP  220 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~  220 (288)
                      ..... ....++++|+++.++++..   ++++.+.|..+.+.+.....-..+ ..++++|+|..+++.. .++.|.++|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            65444 5788999999987777655   689999999998888875544445 8899999999877665 7889999997


Q ss_pred             CCCceeE-EEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEe
Q 023018          221 KSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVCCLN  274 (288)
Q Consensus       221 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~  274 (288)
                      .+....+ .-............+.++|+|..+.+....   +.+...|..++......
T Consensus       190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~  247 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD  247 (381)
T ss_pred             CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence            7655442 100001123445678999999876665443   59999999998888863

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=5.2e-07  Score=72.69  Aligned_cols=93  Identities=13%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICT  208 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~  208 (288)
                      +++.+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ .++++++|.-+. .+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66676666666667777888899999999766 7888999999999999999999988877 789999998854 56888


Q ss_pred             EeCCCeEEEEeCCCCc
Q 023018          209 GSDDATLRVWNPKSGE  224 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~  224 (288)
                      |...|.|.|||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8899999999998643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.55  E-value=8.4e-06  Score=69.20  Aligned_cols=167  Identities=18%  Similarity=0.229  Sum_probs=107.5

Q ss_pred             CeeeEeeccccCcEEEEEEecCCCEEEEEe---CC-CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec-CCC
Q 023018           97 GDWASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS  171 (288)
Q Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  171 (288)
                      +.....+......+..-+|+|++..++...   .. ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            444444444456677788999988655442   22 469999999887655554 233455679999999777654 455


Q ss_pred             --eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          172 --TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       172 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                        .|+++|+..+. +..+....+.-+.-.|+|+|++++..+. .|  .|.++++..+...+....    ...-..-.|+|
T Consensus       261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~----~~~~~~p~~Sp  335 (425)
T COG0823         261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS----GGGNSNPVWSP  335 (425)
T ss_pred             CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc----CCCCcCccCCC
Confidence              47777887766 3334433333346789999999876654 44  477778776655333332    12222668999


Q ss_pred             CCCEEEEEeC-CCc--EEEEEcCCCc
Q 023018          247 DSTLALSGSK-DGS--VHMVNITTGK  269 (288)
Q Consensus       247 ~~~~l~~~~~-dg~--i~iwd~~t~~  269 (288)
                      +|++|+..+. +|.  |.+.++.++.
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCC
Confidence            9999887664 344  7777776665

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.54  E-value=1.8e-05  Score=68.88  Aligned_cols=174  Identities=11%  Similarity=0.022  Sum_probs=112.7

Q ss_pred             EEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCceeEEeccCCCCEEEEEE
Q 023018           82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSW  157 (288)
Q Consensus        82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~  157 (288)
                      +.-..+.+.+.|..+.+....+..- +....+.++|+++++++.+.+    .++..-+.........+....  +  -++
T Consensus       210 ~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~  284 (635)
T PRK02888        210 PKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEA  284 (635)
T ss_pred             ccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHh
Confidence            3344566777787777766665532 234567899999988887632    233333332222222221110  0  133


Q ss_pred             cCCCCEEEEecCCCeEEEEECCc-----ccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce------
Q 023018          158 HPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGEN------  225 (288)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~------  225 (288)
                      .++|++...+  ++.|.+.|.++     .+.+..+. -......+.++|+|+++++++. +.++.|+|+.+.+.      
T Consensus       285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            4467766653  57899999998     34444444 4566789999999999877664 88999999987542      


Q ss_pred             ------eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          226 ------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       226 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                            .....    ........+|.++|....+.--|..|..|++.+
T Consensus       362 ~~~~~vvaeve----vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPE----LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeec----cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                  22222    233445678999998888888899999999987

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.53  E-value=0.00012  Score=57.48  Aligned_cols=182  Identities=17%  Similarity=0.248  Sum_probs=110.2

Q ss_pred             eeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018          102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  179 (288)
                      .+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+-.-.|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4555556799999999765 6667778889988886 47777776543 3458889998877777776678999999883


Q ss_pred             cc------cEEEEee-----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEEc--C---CCccccCeE
Q 023018          180 RA------AYLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIR--G---HPYHTEGLT  240 (288)
Q Consensus       180 ~~------~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--~---~~~~~~~v~  240 (288)
                      ..      .....+.     .++..+-.++|.|.++.|+++-...-..+|.+..   ...+....  .   .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            32      1112222     2455689999999888888887776666776543   22221111  0   111334578


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-------------cceEEEEEeec
Q 023018          241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN-------------FQYTCVAYDLD  285 (288)
Q Consensus       241 ~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~-------------~~~~~~~~~~d  285 (288)
                      ++.++| .+.+++.......|..+| .+|+++..+             ....+++|.++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~  232 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD  232 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence            899999 567777788888999999 778877755             24788888765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.52  E-value=6.5e-05  Score=65.66  Aligned_cols=183  Identities=14%  Similarity=0.189  Sum_probs=116.5

Q ss_pred             CCCeEEEEEccCCeeeEeeccccC--------------------cE-EEEEEecCCCEEEEEeCCC--------------
Q 023018           85 GDDKGFFWRINQGDWASEIQGHKD--------------------SV-SSLAFSMDGQLLASGGLDG--------------  129 (288)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~dg--------------  129 (288)
                      .+|.|..+|..+++.+-.+.....                    .+ ...++.+.+..++.++.++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            367889999999887776643211                    01 1234444566777777665              


Q ss_pred             ----eEEEEeCCCCceeEEeccCCCCE------EEEEEc----CCCC---EEEEecCCCeEEEEECCcccEEEEeeccCC
Q 023018          130 ----LVQIWDPSSGNLKCTLEGPGGGV------EWVSWH----PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHGS  192 (288)
Q Consensus       130 ----~i~i~d~~~~~~~~~~~~~~~~i------~~~~~~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  192 (288)
                          .|.-+|..+++.+..++......      ....+.    -++.   .+++++.+|.++.+|.++++.+......  
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--  330 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--  330 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence                79999999999888765321111      001111    1232   6788889999999999999988776532  


Q ss_pred             CeEEEEEcCCCCEEEEE------------------eCCCeEEEEeCCCCceeEEEcCCCcc-c----cCe--EEEEEcCC
Q 023018          193 SVTCGDFTPDGKTICTG------------------SDDATLRVWNPKSGENIHVIRGHPYH-T----EGL--TCLTISAD  247 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~-~----~~v--~~~~~~~~  247 (288)
                       ...+..+|  ..++.+                  ..+|.|.-+|+.+|+.+......... .    .+.  ..+.  ..
T Consensus       331 -~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~  405 (488)
T cd00216         331 -EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA  405 (488)
T ss_pred             -ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence             11233444  334332                  23678999999999887766532100 0    111  1122  24


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          248 STLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       248 ~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..|++++.||.|+.+|..||+.+...
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEE
Confidence            578889999999999999999999876

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.52  E-value=2.7e-06  Score=73.36  Aligned_cols=125  Identities=14%  Similarity=0.195  Sum_probs=91.1

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE-----Ee-ccC
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-----TL-EGP  148 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~-~~~  148 (288)
                      ...+++.|+.-|.|++|+-..+.....-. +..+.+.....+++..++|.|+..|.|.++-+.......     .. ..|
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            67799999999999999977665443322 234456667788888889999999999999876642211     11 125


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc----cEEEEeeccCCCeEEEEEc
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~  200 (288)
                      ...|++++|++++..+++|...|+|..-.+...    ...+.+....+.|-.+...
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            678999999999999999999999988877662    1223333456677777665

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.50  E-value=7.4e-08  Score=81.88  Aligned_cols=162  Identities=18%  Similarity=0.227  Sum_probs=107.7

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEE----eCCCeEEEEEccCC--eeeE--eecc-ccCcEEEEEEecCCCEEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATG----GGDDKGFFWRINQG--DWAS--EIQG-HKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      .-...+|..++++++|++.+...||+|    ..|..+.|||+.++  -+..  .+.. ......+++|..+.+++++|..
T Consensus        95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence            344567888999999999888888887    33667999999875  2111  1221 2344568899988889999999


Q ss_pred             CCeEEEEeCCCCc-eeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEE-CCcc-cEEEEeeccC----CCeEEEEE
Q 023018          128 DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWN-ADRA-AYLNMFSGHG----SSVTCGDF  199 (288)
Q Consensus       128 dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~-~~~~~~~~~~----~~i~~~~~  199 (288)
                      ...++++|++... ....+  ....+..+...| .++++++-. +|.|.+|| .++- .++..+....    ..+..++|
T Consensus       175 sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             cchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence            9999999988432 11122  223456677788 566666555 89999999 3332 2333332222    24899999


Q ss_pred             cCCC-CEEEEEe-CCCeEEEEeCC
Q 023018          200 TPDG-KTICTGS-DDATLRVWNPK  221 (288)
Q Consensus       200 ~p~~-~~l~~~~-~dg~i~i~d~~  221 (288)
                      .|.. ..+++.. ..++|+.||+.
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCCcchhhhhccCcceEEEeccc
Confidence            9933 2344444 46689999985

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.45  E-value=0.00048  Score=55.80  Aligned_cols=197  Identities=12%  Similarity=0.093  Sum_probs=116.7

Q ss_pred             EEEcCCCCcEEEEE--eCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEE--
Q 023018           70 VACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-SGNLKCT--  144 (288)
Q Consensus        70 ~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~--  144 (288)
                      ++++. ++++++..  +-.-.|.|-|+...+.+..+.- .+. ..+ +-...+.|.+-|.||.+.-..+. .|+...+  
T Consensus       100 ~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC-~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen  100 FALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGC-WLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             EEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSE-EEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             eEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCE-EEE-EecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            34555 44444433  2234577777777777776652 222 222 21122468888899999988887 4544322  


Q ss_pred             --eccCCCCE-EEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeecc----------CCCeEEEEEcCCCCEEEEE
Q 023018          145 --LEGPGGGV-EWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGH----------GSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       145 --~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~----------~~~i~~~~~~p~~~~l~~~  209 (288)
                        |.....++ ..-++...+..++..+..|.|+-.|+.....  ...+...          .+.-.-+++++..++|++.
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence              11222222 2334455555666678889999999876532  2222210          1223346777766666553


Q ss_pred             eC---CC-------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCcEEEEe
Q 023018          210 SD---DA-------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSG-SKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~t~~~~~~~  274 (288)
                      -.   +|       .|-+||+.+++.+..+.    ...++.++..+.+.. +|++. ..++.+.+||..||+.+..+
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            21   11       48888999999999887    345677899998654 66554 45789999999999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=5e-05  Score=67.25  Aligned_cols=175  Identities=15%  Similarity=0.199  Sum_probs=115.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEEEccCC------eee--Eeecc-----ccCcEEEEEEe
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDD-----KGFFWRINQG------DWA--SEIQG-----HKDSVSSLAFS  116 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~------~~~--~~~~~-----~~~~i~~~~~~  116 (288)
                      +.++-++.+...|...-|.-.+..+|++-+.|+     .|+||++...      +++  ..+..     ...++.+++.+
T Consensus        55 ~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs  134 (933)
T KOG2114|consen   55 QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS  134 (933)
T ss_pred             eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE
Confidence            344556666666333334443556777766654     4999998653      122  11111     35678999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCC----CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-EEEeeccC
Q 023018          117 MDGQLLASGGLDGLVQIWDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHG  191 (288)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~  191 (288)
                      .+-+.+|+|-.+|.|..+.-.    .+...........+|+.+++..++..++.+.....|.+|.+....+ ...+..++
T Consensus       135 ~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G  214 (933)
T KOG2114|consen  135 EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG  214 (933)
T ss_pred             ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC
Confidence            998899999999999998532    1222222233566899999998887634344447899999874442 44477788


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                      .++.|..+++....+++++ +..|.+|+.....+-..+.
T Consensus       215 ~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  215 ISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            8999999998655465555 4569999987655555555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.43  E-value=0.00012  Score=61.74  Aligned_cols=209  Identities=13%  Similarity=0.127  Sum_probs=116.9

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--c------ccCcEEEEEEec-----CC-
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--G------HKDSVSSLAFSM-----DG-  119 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~------~~~~i~~~~~~~-----~~-  119 (288)
                      -.|...+...+++|++++.+  +--++|.|..+|.+.|.|++....+..-.  .      ....++++.|..     ++ 
T Consensus        76 f~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             cCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            45666777779999999998  45599999999999999998877666522  1      234688888873     22 


Q ss_pred             --CEEEEEeCCCeEEEEeCC--C-CceeE----EeccCCCCEEEEE-EcCC--------------------CCEEEEecC
Q 023018          120 --QLLASGGLDGLVQIWDPS--S-GNLKC----TLEGPGGGVEWVS-WHPR--------------------GHIVLAGSE  169 (288)
Q Consensus       120 --~~l~~~~~dg~i~i~d~~--~-~~~~~----~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~  169 (288)
                        -.+++|...|.+.+|.+.  . +....    ....+.+++..+. ++.+                    -+.+++...
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              278899999999999764  1 21111    1123445555554 2211                    022444555


Q ss_pred             CCeEEEEECCcccEEEEeeccCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-ccccCeEEEE
Q 023018          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLT  243 (288)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~  243 (288)
                      ...++++...+.+..++..........+.+-     ..+..|++-..+|.|++|.+...+.+..+.... .....+...+
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            6889999998877666554222233344453     245668888899999999999888777665421 1223345567


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEc
Q 023018          244 ISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       244 ~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      ++++|..++..+. ..+.++.+
T Consensus       314 is~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  314 ISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             E-TTS-EEEE-SS-SEEEEEEE
T ss_pred             ECCCCCEEEEeCc-ccEEEEEE
Confidence            7888987766543 34444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.42  E-value=0.00028  Score=60.10  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=95.3

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe-------ccCCCCEEEEEEcCC
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-------EGPGGGVEWVSWHPR  160 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~  160 (288)
                      .|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... ...+       ......+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            48888865 55666655444899999998754 55666789999999986333 1111       111222333333334


Q ss_pred             CCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeE---------E-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018          161 GHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVT---------C-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI  229 (288)
Q Consensus       161 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~---------~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (288)
                      |  ++.-+.++.+++..--... ..+.+........         . ..++.+....+....++.+.+.+-...+.   +
T Consensus       139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence            5  3333344555554322211 1111110000000         0 12333333444444444555333222111   1


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .    ..+++..++.||++++|+.-..+|.+.+.+..-.+.+..+
T Consensus       214 ~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  214 D----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             c----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            1    2367999999999999999999999999887666665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.41  E-value=8e-05  Score=57.25  Aligned_cols=144  Identities=19%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (288)
                      ..+++.|+..+.+.--|..+|+....... ..+|-+-+.- -|++++.|+..|.+++.+..+|..+..+.....--....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            34788899999999999999987765331 2223332222 477899999999999999999988888775443333445


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ..+++..++.|+.|+..+..|.++...+...+.   ......+-+..|....|+++...|.+.-...++
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            677899999999999999999999888777553   222222334455223334444455544444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.40  E-value=0.00011  Score=62.84  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .-..+.+....-....++++| +++++++++ +|...|+.....+...     .+....++|.+.+ .+|+-...+.|.|
T Consensus        22 ~l~~k~lg~~~~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I   93 (443)
T PF04053_consen   22 PLSVKELGSCEIYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKI   93 (443)
T ss_dssp             ----EEEEE-SS--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred             eEEeccCCCCCcCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEE
Confidence            344455555566688999999 777777744 5888888854443322     2334568898855 5677777889999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      +.--.......+.... .+..|..   |.+|+..+. +.|.+||..+++.++.+...  +|..+.|++++.+++..+.+ 
T Consensus        94 ~kn~~~~~~k~i~~~~-~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPF-SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             EETTEE-TT-----SS--EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             EEcCccccceEEcCCc-ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-
Confidence            6332333323343222 2444433   777777665 48999999999999998743  48999999999999988855 


Q ss_pred             eEEEEeCC
Q 023018          214 TLRVWNPK  221 (288)
Q Consensus       214 ~i~i~d~~  221 (288)
                      .+.|++..
T Consensus       166 ~i~il~~~  173 (443)
T PF04053_consen  166 SIYILKYN  173 (443)
T ss_dssp             SEEEEEE-
T ss_pred             eEEEEEec
Confidence            57777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=7.9e-05  Score=63.63  Aligned_cols=145  Identities=17%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE
Q 023018          106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN  185 (288)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  185 (288)
                      .......+.++|+++++++ +.+|...||.....+....     +.....+|.+. ..+|+-...++|.++.--+.....
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence            3445678999999998888 4578888888444433221     23456788884 457777778899997332333223


Q ss_pred             EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       186 ~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      .++. ...+..|-.   |..|+..+. +.|.+||..+++.++.+..     .+|..+.|++++.+++..+.+ .+++++.
T Consensus       104 ~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  104 SIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             EEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            3332 223444432   777777764 4899999999999999874     248999999999999888755 6788775


Q ss_pred             CCC
Q 023018          266 TTG  268 (288)
Q Consensus       266 ~t~  268 (288)
                      ...
T Consensus       173 ~~~  175 (443)
T PF04053_consen  173 NLE  175 (443)
T ss_dssp             -HH
T ss_pred             cch
Confidence            543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.39  E-value=5.3e-05  Score=62.58  Aligned_cols=174  Identities=13%  Similarity=0.151  Sum_probs=107.6

Q ss_pred             CeEEEEEccCCeeeEeecc-ccCcEEEEEEe---cC----CCEEEEEeC---------C-CeEEEEeCCCC----ceeEE
Q 023018           87 DKGFFWRINQGDWASEIQG-HKDSVSSLAFS---MD----GQLLASGGL---------D-GLVQIWDPSSG----NLKCT  144 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~---~~----~~~l~~~~~---------d-g~i~i~d~~~~----~~~~~  144 (288)
                      +.|++.|..+.+.+..+.- ....+++++..   .+    ..+|++|+.         . |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4678888887776665542 22344444433   22    457887753         2 89999999884    12221


Q ss_pred             e--ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          145 L--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       145 ~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      +  ....++|++++-- ++. |+++.. +.|.+|++...+ ....-.. ....+.++...  ++++++|..-..+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            1  2346789888876 344 554443 899999998776 4433221 23356666554  679999998888887744


Q ss_pred             CC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          221 KS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       221 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .. ...+..+... .....++++.+-++++.++++..+|.+.++...
T Consensus       157 ~~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            32 3334444322 134568888888666789999999999999887

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.37  E-value=0.00056  Score=55.59  Aligned_cols=206  Identities=17%  Similarity=0.129  Sum_probs=125.9

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-  147 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  147 (288)
                      +-.|.+..+.++.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++..  -+.+++..++..+..+.. 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            34577755567777777888999998765432 222 2334455544444445555533  356667665555333221 


Q ss_pred             ----CCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          148 ----PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       148 ----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                          .....+.+...|+|.+.++...           -|.++.++. .+..++.+..+-...+.|+|||+++.|+.+...
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence                2245677888999887766544           134555554 455566665555566889999999988877654


Q ss_pred             -CeEEEEeCCC--Cc---e-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEe----cceEEE
Q 023018          213 -ATLRVWNPKS--GE---N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVCCLN----FQYTCV  280 (288)
Q Consensus       213 -g~i~i~d~~~--~~---~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~t~~~~~~~----~~~~~~  280 (288)
                       +.|.-|++..  +.   . ......  ......-.++...+|.+.+++...| .|.+|+.. |+++..+    ...+++
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~--~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~  260 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFD--EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEcc--CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence             6788777642  21   1 111111  1334556678888888776555554 99999988 8888876    334555


Q ss_pred             EE
Q 023018          281 AY  282 (288)
Q Consensus       281 ~~  282 (288)
                      +|
T Consensus       261 ~F  262 (307)
T COG3386         261 AF  262 (307)
T ss_pred             eE
Confidence            55

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.37  E-value=7.5e-06  Score=70.74  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=90.1

Q ss_pred             CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-
Q 023018          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-  226 (288)
Q Consensus       150 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~-  226 (288)
                      ..+.--+++..+++++.|+..|.+++|+-..++. ..++  +..+.+..+..+++..++|.|+..|.|.++-+..+.+. 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3455556677889999999999999998655543 3333  24455667778888888999999999999987664332 


Q ss_pred             --EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          227 --HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       227 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                        .....+..|...|++++|++++..|++|...|.|..-.+.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              22233334788999999999999999999999999998887

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3e-06  Score=72.27  Aligned_cols=94  Identities=22%  Similarity=0.295  Sum_probs=80.1

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEE-EEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ...|.-+.|+| ...++|++..+|.|.++.+. .+.+.++..+...++ +++|.|+|+.||+|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34688899999 88899999999999999998 788888887777777 9999999999999999999999999998777


Q ss_pred             EEec-cCCCCEEEEEEcC
Q 023018          143 CTLE-GPGGGVEWVSWHP  159 (288)
Q Consensus       143 ~~~~-~~~~~i~~~~~~~  159 (288)
                      ..+. .....|.++-|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            6632 2445688888864

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.30  E-value=0.0003  Score=54.95  Aligned_cols=209  Identities=15%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeeeEeeccccCcE--EEEEEecCCCEEEEEeC-----CCeEEEEeCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGL-----DGLVQIWDPS  137 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~i~d~~  137 (288)
                      ....++++|..+.-++.+..-|+ ..++|....+...++...++.-  -.-.|+|+|.+|...-.     -|.|-|||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            34568889877777888777666 5788888776655554322211  12369999999887744     3789999987


Q ss_pred             CC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCC------------------CeEEEEECCcccEEEEee----ccCCCe
Q 023018          138 SG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------STVWMWNADRAAYLNMFS----GHGSSV  194 (288)
Q Consensus       138 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~----~~~~~i  194 (288)
                      .+ +.+..+..|.-....+.|.++|+.++.+...                  -.+.+.|-.++.++.+..    .+...+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            54 4455677788788999999999998887531                  123444444444433221    234567


Q ss_pred             EEEEEcCCCCEEEEEeCCCe-----EEEEeCCCCceeEEEcCCCc----cccCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 023018          195 TCGDFTPDGKTICTGSDDAT-----LRVWNPKSGENIHVIRGHPY----HTEGLTCLTISA-DSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  264 (288)
                      +.++..++|..++-+-..|.     -.+=-.+.++.+..+...+.    ....|-+++.+. ++...+++-..+...+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            88888888776665544332     11111223444443332210    123466777776 444455555667788999


Q ss_pred             cCCCcEEEEe
Q 023018          265 ITTGKVCCLN  274 (288)
Q Consensus       265 ~~t~~~~~~~  274 (288)
                      ..||.++..-
T Consensus       309 a~tG~vv~~a  318 (366)
T COG3490         309 AATGAVVSEA  318 (366)
T ss_pred             cCCCcEEecc
Confidence            9999988654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=2.6e-05  Score=65.56  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=96.8

Q ss_pred             CCCE-EEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-------EEEEecCCCeEEEEECCcc-c-EEEEe
Q 023018          118 DGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRA-A-YLNMF  187 (288)
Q Consensus       118 ~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~-~-~~~~~  187 (288)
                      +.++ |.++..-..++-.|+..|+.+.....+.. |.-+.+.|+.+       .-+.|-.+..|.-||+|-. + .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3443 44555556788889999999999887766 77777877543       2345667889999998742 2 22222


Q ss_pred             ecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          188 SGH----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       188 ~~~----~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      +.|    .....|.+-..+ .++++|+.+|.|++||. .+.. ...+++   ...+|..+..+.+|.+|++.| +..+.+
T Consensus       423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPg---LG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPG---LGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccc---cCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            222    233455554444 58999999999999997 4433 333444   678999999999999987665 556666


Q ss_pred             EEcC
Q 023018          263 VNIT  266 (288)
Q Consensus       263 wd~~  266 (288)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            6653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.30  E-value=0.00012  Score=64.02  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCC-----CceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccE------
Q 023018          116 SMDGQLLASGGLDGLVQIWDPSS-----GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAY------  183 (288)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~------  183 (288)
                      .++|++...+  ++.|.+.|..+     .+.+..+.... ....+.++|+|+++++++. +.+|.|.|+.+.+.      
T Consensus       285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            3467766653  57899999988     45555565444 4788999999998877765 88999999987542      


Q ss_pred             ------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          184 ------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       184 ------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                            +..... .......+|.++|....+...|..|..|++..
T Consensus       362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                  333333 23344568999998888888899999999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.00017  Score=60.36  Aligned_cols=184  Identities=15%  Similarity=0.183  Sum_probs=104.1

Q ss_pred             CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-----------------
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP-----------------  148 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------  148 (288)
                      .+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.+++..++...+.-...                 
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            46799999998765554443 66788899999999988875 678999998777443322111                 


Q ss_pred             CCCEEEEEEcCCCCEEEEecCC-C-----------------------------------eEEEEECCcccEE--EEe---
Q 023018          149 GGGVEWVSWHPRGHIVLAGSED-S-----------------------------------TVWMWNADRAAYL--NMF---  187 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~i~d~~~~~~~--~~~---  187 (288)
                      -+.-..+.|+|++++|+....| .                                   .+.++++.+++..  ...   
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            1223568899999988875432 1                                   1233444333321  111   


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEe--CCC---eEEEEeCCCCceeEEEcCCC-ccccCeEEEEEc-CCC-CEEEEEeCCC-
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGS--DDA---TLRVWNPKSGENIHVIRGHP-YHTEGLTCLTIS-ADS-TLALSGSKDG-  258 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~--~dg---~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~-~~l~~~~~dg-  258 (288)
                      ......+..+.|.+++..|+...  .+.   .+.++|..++.......... .--..-....+. +++ .+|.....+| 
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            12234578889999888444433  222   46777887765543332210 011112234443 544 4555555676 


Q ss_pred             -cEEEEEcCCCcEE
Q 023018          259 -SVHMVNITTGKVC  271 (288)
Q Consensus       259 -~i~iwd~~t~~~~  271 (288)
                       .|++++..++...
T Consensus       260 ~hly~~~~~~~~~~  273 (353)
T PF00930_consen  260 RHLYLYDLDGGKPR  273 (353)
T ss_dssp             EEEEEEETTSSEEE
T ss_pred             cEEEEEccccccee
Confidence             4666666666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=7.6e-06  Score=69.88  Aligned_cols=94  Identities=17%  Similarity=0.273  Sum_probs=78.7

Q ss_pred             CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHV  228 (288)
Q Consensus       150 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~  228 (288)
                      ..+.-+.|+|.-.+||++..+|.|.+..+. .+.+.++..++..++ +++|.|+|+.|++|-.||+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            458889999999999999999999999887 777888887777777 999999999999999999999999999877665


Q ss_pred             EcCCCccccCeEEEEEcC
Q 023018          229 IRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~  246 (288)
                      ....  ....|.++.|+|
T Consensus       100 ~~~s--~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFS--VETDISKGIWDR  115 (665)
T ss_pred             cccc--cccchheeeccc
Confidence            3211  455677777763

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.26  E-value=0.00082  Score=55.56  Aligned_cols=181  Identities=18%  Similarity=0.212  Sum_probs=107.1

Q ss_pred             CcEEEEEeC----------CCeEEEEEccCC----eeeEee--ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           77 ATLVATGGG----------DDKGFFWRINQG----DWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        77 ~~~l~~~~~----------dg~i~iw~~~~~----~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      ..++++|+.          .|.|.++++...    ..+..+  ....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            567777754          289999999884    122221  2357889998876 34 455544 5889999998877


Q ss_pred             -eeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-ccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          141 -LKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       141 -~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                       ...... .....+.++...  ++++++|..-..+.++..+. ...+..+.  .....++++.+-++++.++.+..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             433322 123356666665  56999998888888774432 22122222  234568888888766799999999999


Q ss_pred             EEEeCCC-------Cc-eeEEEcCCCccccCeEEE---EEcC--CC------CEEEEEeCCCcEEEE
Q 023018          216 RVWNPKS-------GE-NIHVIRGHPYHTEGLTCL---TISA--DS------TLALSGSKDGSVHMV  263 (288)
Q Consensus       216 ~i~d~~~-------~~-~~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~~~dg~i~iw  263 (288)
                      .++....       +. .+....... ....|+++   ++.|  .+      ..++.++.+|.|.+.
T Consensus       197 ~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  197 FVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            9987642       22 222222211 34567776   4444  12      247778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=98.17  E-value=0.0002  Score=63.56  Aligned_cols=187  Identities=14%  Similarity=0.142  Sum_probs=98.3

Q ss_pred             CCcEEEEEeCC------CeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCcee
Q 023018           76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK  142 (288)
Q Consensus        76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  142 (288)
                      ++.+++.||.+      ..+..||..+......  +....... +++ .-+++..+.|+.++     .+..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45667777753      3477788777654322  11111111 222 23677777787654     4788998876543


Q ss_pred             EE--eccCCCCEEEEEEcCCCCEEEEecCCC-----------------------eEEEEECCcccE--EEEeeccCCCeE
Q 023018          143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAY--LNMFSGHGSSVT  195 (288)
Q Consensus       143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~--~~~~~~~~~~i~  195 (288)
                      ..  +.........+..  ++++++.|+.++                       .+..||.++.+-  +..+........
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            22  2222222222233  577888887642                       477788776532  222211111111


Q ss_pred             EEEEcCCCCEEEEEeCC------CeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcC
Q 023018          196 CGDFTPDGKTICTGSDD------ATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNIT  266 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~  266 (288)
                      .+.+  ++...+.|+.+      ..+..||..+ .+ ...+...+........+.+  ++.+.++|+.+|  .+..||..
T Consensus       459 ~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        459 VVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             EEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC-eeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence            1222  45666667654      2467899886 33 2223222212222222222  678888998888  78888888


Q ss_pred             CCcEE
Q 023018          267 TGKVC  271 (288)
Q Consensus       267 t~~~~  271 (288)
                      |.+-.
T Consensus       534 ~~~W~  538 (557)
T PHA02713        534 TYEWN  538 (557)
T ss_pred             ccccc
Confidence            87643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.15  E-value=0.0028  Score=55.88  Aligned_cols=185  Identities=10%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             CCeEEEEEccCCeeeEeecccc-------------------------------CcE-EEEEEecCCCEEEEEeCC-----
Q 023018           86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSV-SSLAFSMDGQLLASGGLD-----  128 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i-~~~~~~~~~~~l~~~~~d-----  128 (288)
                      +|.|..+|..+++.+-.+..-.                               ..+ ..+++.|...+++.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            6889999999988766543211                               011 133566666666655421     


Q ss_pred             C-----------eEEEEeCCCCceeEEeccCCC---------CEEEEEEcCCCC---EEEEecCCCeEEEEECCcccEEE
Q 023018          129 G-----------LVQIWDPSSGNLKCTLEGPGG---------GVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAYLN  185 (288)
Q Consensus       129 g-----------~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~  185 (288)
                      +           .|.-.|+++|+....++....         ...-+....+|+   .++.++++|.++++|-++++++.
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            2           577778999998877764221         122233334565   78899999999999999998762


Q ss_pred             E--------ee---c-cC-CCe----------------------------EEEEEcCCCCEEEEEeCC------------
Q 023018          186 M--------FS---G-HG-SSV----------------------------TCGDFTPDGKTICTGSDD------------  212 (288)
Q Consensus       186 ~--------~~---~-~~-~~i----------------------------~~~~~~p~~~~l~~~~~d------------  212 (288)
                      .        +.   . .. .++                            ..++++|...+++....+            
T Consensus       340 ~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~  419 (527)
T TIGR03075       340 AEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSY  419 (527)
T ss_pred             cccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccccccccccccc
Confidence            1        10   0 00 000                            125566655555443322            


Q ss_pred             ---------------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          213 ---------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       213 ---------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                                           |.|.-+|+.+++...........   ..+. ..-.+.+++.++.+|.++.+|.+||+.+
T Consensus       420 ~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~---~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       420 KKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL---WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             CCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC---CCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence                                 45777888888777665532111   1111 1124557778888999999999999999


Q ss_pred             EEe
Q 023018          272 CLN  274 (288)
Q Consensus       272 ~~~  274 (288)
                      ...
T Consensus       496 w~~  498 (527)
T TIGR03075       496 WKF  498 (527)
T ss_pred             EEE
Confidence            876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.13  E-value=0.00076  Score=45.26  Aligned_cols=101  Identities=18%  Similarity=0.179  Sum_probs=70.2

Q ss_pred             EEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        67 v~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      |++|++..   ++...|++|+.|..|++|+-.  ..+..+. -...|++++-... ..|+.+..+|+|-+|+-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            66777665   344788999999999999854  5666666 3456777776655 579999999999999753  3344


Q ss_pred             EeccCCCCEEEEEEcC-CC---CEEEEecCCCeEE
Q 023018          144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW  174 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~-~~---~~l~~~~~dg~i~  174 (288)
                      +.+.... +.++++.. ++   ..|++|-.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4443333 56665544 32   2788888888774

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.13  E-value=0.00025  Score=62.92  Aligned_cols=168  Identities=13%  Similarity=0.045  Sum_probs=94.8

Q ss_pred             CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe------CCC--eEEEEeCCCCceeEEeccCCCCEEEEEE
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSW  157 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~  157 (288)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|+.++...      .+.  .|.+++.. +.. ..+... .....-.|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceE
Confidence            56664433222222222223334678899999999877665      243  45555542 222 223222 23788999


Q ss_pred             cCCCCEEEEecCC------------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE---EeCCC
Q 023018          158 HPRGHIVLAGSED------------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKS  222 (288)
Q Consensus       158 ~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i---~d~~~  222 (288)
                      +|+|..+++....            +.+.+.++..+....   .....|..+.|||||.+++... +|.|++   -....
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            9998877776532            233333443333222   2356799999999999988766 577776   44444


Q ss_pred             CceeEE-----EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          223 GENIHV-----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       223 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      |. ...     +..  .....+..+.|..++.++ ++..++...+|.
T Consensus       481 G~-~~l~~~~~l~~--~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        481 GQ-YALTNPREVGP--GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             Cc-eeecccEEeec--ccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            43 111     111  122345789999988855 544444444444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.12  E-value=0.0033  Score=55.45  Aligned_cols=192  Identities=15%  Similarity=0.191  Sum_probs=120.3

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeecccc-CcEE----------EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVS----------SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~----------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      ..+++++.++.|+-.|..+++.+-.+.... ..+.          .+++  .+..++.++.++.|.-+|..+|+.+....
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            355667777899999999998877765211 1111          1122  23467778889999999999999887655


Q ss_pred             cCCCC-EEEEEEcC--CCCEEEEecC------CCeEEEEECCcccEEEEeeccCC-------------------------
Q 023018          147 GPGGG-VEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGS-------------------------  192 (288)
Q Consensus       147 ~~~~~-i~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~-------------------------  192 (288)
                      ..... -..+.-+|  .+..++++..      +|.|..+|.++++.+..+..-..                         
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~  227 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA  227 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence            32110 01111122  1234555432      68999999999988766542111                         


Q ss_pred             ------Ce-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCceeEEEcCCCccc-------cCeEEE
Q 023018          193 ------SV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHPYHT-------EGLTCL  242 (288)
Q Consensus       193 ------~i-~~~~~~p~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~~  242 (288)
                            .+ ..+++.|...+|+.+...     +           .|.-.|+++|+....++..+ |.       ....-+
T Consensus       228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~-~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP-HDEWDYDGVNEMILF  306 (527)
T ss_pred             cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC-CCCccccCCCCcEEE
Confidence                  11 134666666677766522     2           57778999999887766432 11       112223


Q ss_pred             EEcCCCC---EEEEEeCCCcEEEEEcCCCcEEE
Q 023018          243 TISADST---LALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       243 ~~~~~~~---~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .+..+|+   .++.+..+|.+++.|-.||+++.
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            3334665   78899999999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.10  E-value=0.001  Score=55.75  Aligned_cols=217  Identities=18%  Similarity=0.221  Sum_probs=119.4

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-c-------c---------cCcEEEEEEecCCCEEEEEe
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-G-------H---------KDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~-------~---------~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ...+....|+| +++.+|... ++.|++++..++...+.-. +       -         -+.-..+.|+|++++||...
T Consensus        42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            56788899999 566766655 4789999987764433211 1       0         11225688999999888764


Q ss_pred             CC-Ce-----------------------------------EEEEeCCCCceeEE-e----ccCCCCEEEEEEcCCCCEEE
Q 023018          127 LD-GL-----------------------------------VQIWDPSSGNLKCT-L----EGPGGGVEWVSWHPRGHIVL  165 (288)
Q Consensus       127 ~d-g~-----------------------------------i~i~d~~~~~~~~~-~----~~~~~~i~~~~~~~~~~~l~  165 (288)
                      .| ..                                   +.|+++.+++.... .    ......+..+.|.+++..|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            32 11                                   33344544443211 1    12334578889999888444


Q ss_pred             Eec--CC---CeEEEEECCcccEEEEeec-cCCCe---EEEEEc-CCCC-EEEEEeCCC--eEEEEeCCCCceeEEEcCC
Q 023018          166 AGS--ED---STVWMWNADRAAYLNMFSG-HGSSV---TCGDFT-PDGK-TICTGSDDA--TLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       166 ~~~--~d---g~i~i~d~~~~~~~~~~~~-~~~~i---~~~~~~-p~~~-~l~~~~~dg--~i~i~d~~~~~~~~~~~~~  232 (288)
                      ..-  .+   -.+.++|..++.....+.. ....|   ....+. +++. +|.....+|  .|.+++...+.. ..+.. 
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~-  277 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTS-  277 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS--
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecccc-
Confidence            432  22   2467778876644332221 22222   344554 5554 455555667  466667765553 34433 


Q ss_pred             CccccCeEE-EEEcCCCCEE-EEEeCC----CcEEEEEcC-CCcEEEEe--cc-eEEEEEeecc
Q 023018          233 PYHTEGLTC-LTISADSTLA-LSGSKD----GSVHMVNIT-TGKVCCLN--FQ-YTCVAYDLDF  286 (288)
Q Consensus       233 ~~~~~~v~~-~~~~~~~~~l-~~~~~d----g~i~iwd~~-t~~~~~~~--~~-~~~~~~~~df  286 (288)
                        ....|.. +.|+++++.| +++..+    ..|+..++. ++++.+..  .. +..+.|||+.
T Consensus       278 --G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg  339 (353)
T PF00930_consen  278 --GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG  339 (353)
T ss_dssp             --SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred             --CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence              3445644 6788876554 455543    367777778 55555544  22 3478888774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.08  E-value=0.0017  Score=51.16  Aligned_cols=169  Identities=13%  Similarity=0.174  Sum_probs=112.4

Q ss_pred             ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc
Q 023018          104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA  182 (288)
Q Consensus       104 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  182 (288)
                      .+-...+.++.|+|+.+.|++......-.|+=...|+.+.+++-. -...-.|.|..++.+.++--.++.++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            344556999999999998888887777777777788888877532 2235567888777777777778888888775542


Q ss_pred             EEEE----------eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE---cCCC----ccccCeEEEEEc
Q 023018          183 YLNM----------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI---RGHP----YHTEGLTCLTIS  245 (288)
Q Consensus       183 ~~~~----------~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~----~~~~~v~~~~~~  245 (288)
                      .+..          ....+...-.++|.|....|+.+=.-.-+.||....+......   ..+.    ..-..|.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            2111          1122567789999999999998888887888766533211111   1100    012346778888


Q ss_pred             C-CCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          246 A-DSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       246 ~-~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      + .+.+|+-+.+++.+.-.|.. |.++..
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~  269 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIEL  269 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeee
Confidence            7 56677777777777777765 444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.07  E-value=0.00099  Score=59.26  Aligned_cols=187  Identities=13%  Similarity=0.156  Sum_probs=101.2

Q ss_pred             CCEEEEEEcCCCCcEEEEEe-----CCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---------
Q 023018           65 DEVYSVACSPTDATLVATGG-----GDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---------  128 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~-----~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------  128 (288)
                      ..+...+++|++...+++..     .|+  .|.+++.. +.......+  ...+.-.|+|+|+.|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            35778899995444444442     244  44444542 222222232  237788999998877766432         


Q ss_pred             ---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEE---EECCccc-EE---EEee-ccCCCeEEE
Q 023018          129 ---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAA-YL---NMFS-GHGSSVTCG  197 (288)
Q Consensus       129 ---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~-~~~~~i~~~  197 (288)
                         +.+.+.++..+....   ...+.|..+.|+|+|..++.... |.|++   -....+. .+   ..+. .....+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               233333443332222   22456999999999998887764 77777   4433443 11   1122 233346889


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          198 DFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       198 ~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      .|.+++.++ ++..++.-.+|.+.- |.....+... ....++..++-++.  -|+....+|.+.+
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~-n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR-NLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEecCCccccccCCC-CccCceEEEecCCc--eEEEEcCCceEEe
Confidence            999988754 555545444454321 2222222221 13456777777763  4555566664444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.04  E-value=0.0045  Score=50.16  Aligned_cols=159  Identities=13%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             EeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC-C
Q 023018          101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-D  179 (288)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~  179 (288)
                      .......+.+..+.-+++|++++++.....+.-|+.....-...-+.....|..+.|.|++.+.+++ ..|.|++=+. .
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            3344456778888889999999888766666678755433333333455789999999998776655 7788888772 2


Q ss_pred             cccEEE----EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          180 RAAYLN----MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       180 ~~~~~~----~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      ....-.    .+....-.+..++|.+++...++|+ .|.+ +.....|+..............+..+.|.+..+-++ .+
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG  293 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG  293 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence            222111    1112333578999998877666555 5544 455566777666654333455688888876555544 45


Q ss_pred             CCCcEEEE
Q 023018          256 KDGSVHMV  263 (288)
Q Consensus       256 ~dg~i~iw  263 (288)
                      .+|.|.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            78877655

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.01  E-value=0.0074  Score=51.58  Aligned_cols=173  Identities=10%  Similarity=0.075  Sum_probs=88.3

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-------cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      +.|.++.|.. +..++ +-..||.+++|++.... ...+.       .....+....+..+|  ++.-..++.+.+..-.
T Consensus        81 ~~iv~~~wt~-~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTD-DEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECC-CCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCc
Confidence            6777888876 44444 55678999999986333 11111       112222222333344  3333345555544322


Q ss_pred             CCc-eeEEecc-CC--C------CEEE-EEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          138 SGN-LKCTLEG-PG--G------GVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       138 ~~~-~~~~~~~-~~--~------~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      ... ....+.. +.  .      .... ..++.+....+....++.+.+.+-...+.   +. ..+++..|+.||+++++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEE
Confidence            211 1111110 10  0      0000 12333333444444445555443322111   11 24689999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                      |.-..+|.+.+....-.+....+...  .......+.|+-+.
T Consensus       232 Al~t~~g~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  232 ALFTDSGNLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGND  271 (410)
T ss_pred             EEEECCCCEEEEECcccceeEEeecC--cCCCCcEEEEECCC
Confidence            99999999998876544554444432  23445566676543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.00  E-value=0.0016  Score=43.78  Aligned_cols=101  Identities=14%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             EEEEEEcC---C-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018          152 VEWVSWHP---R-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (288)
Q Consensus       152 i~~~~~~~---~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (288)
                      |+++++..   + .+.|++|+.|..|++|+-  ...+..+. ....|++++-... ..++.+..+|+|-+|+-.  +.+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            55666654   2 258999999999999974  45666666 3456777776655 678889999999999853  3444


Q ss_pred             EEcCCCccccCeEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 023018          228 VIRGHPYHTEGLTCLTISA-D--S-TLALSGSKDGSVHM  262 (288)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~i  262 (288)
                      .+.    .+..+.++.+.. +  | .-|++|-.+|.|-+
T Consensus        76 RiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   76 RIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            444    234466666554 3  2 36888888887743

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00037  Score=58.87  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-------EEEEEeCCCeEEEEeCCCCce--eEEeccC-
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGNL--KCTLEGP-  148 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-  148 (288)
                      ++.++.....|+-.|+..|+.+.....+.. |+-+.+.|+.+       .=+.|-.+..|.-||.+-...  +...+.+ 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344455556688888899999988886665 77778887654       224556678899999874332  1111111 


Q ss_pred             ---CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          149 ---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       149 ---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                         .....|.+-..+| +|++|+.+|.|++||--..+....+.+...+|..+..+.+|.+|+..+ +..|.+.++
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence               2235555554444 899999999999999633344556778889999999999999987666 456666654

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=2.5e-05  Score=41.46  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=33.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR   93 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~   93 (288)
                      ++...+..|...|.+++|++ ...++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45677889999999999999 668999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.97  E-value=0.014  Score=53.63  Aligned_cols=195  Identities=12%  Similarity=0.151  Sum_probs=121.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccC--------cEEEEEEec----------------CCCEEEEEeCCCeEEE
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFSM----------------DGQLLASGGLDGLVQI  133 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~i  133 (288)
                      ..++.++.++.|+-.|..+++.+-++.....        ....+.+..                .+..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            3566777789999999999988777653211        012233321                2347888889999999


Q ss_pred             EeCCCCceeEEeccCCCCE-------------EEEEEcC--CCCEEEEecC----------CCeEEEEECCcccEEEEee
Q 023018          134 WDPSSGNLKCTLEGPGGGV-------------EWVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFS  188 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~  188 (288)
                      .|..+|+.+..+... +.+             ..+.-.|  .+..+++|+.          .|.|+-+|.++|+.+..+.
T Consensus       275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999999988766421 111             1112222  2345666642          6889999999999887764


Q ss_pred             cc---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeEEEcCC
Q 023018          189 GH---------GS--------SV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       189 ~~---------~~--------~i-~~~~~~p~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~  232 (288)
                      .-         .+        .+ ..+++.|....++.+.                  ..+.|.-.|+++|+....++..
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            21         00        01 2344555444444422                  1345677788888887766542


Q ss_pred             Ccc-------ccCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          233 PYH-------TEGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       233 ~~~-------~~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      . |       .....-+.+.. +|+   .++.++.+|.++++|-+||+.+...
T Consensus       434 ~-hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       434 H-HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             C-CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            1 1       01111222322 553   7889999999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.97  E-value=0.0059  Score=49.23  Aligned_cols=141  Identities=16%  Similarity=0.220  Sum_probs=87.1

Q ss_pred             CCcEEEEEeCCCeEEEEEccC-CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe---------
Q 023018           76 DATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------  145 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------  145 (288)
                      .+..|+.|+.+| |++++... .......  +..+|..+...|+-+.|++-+ |+.++++++..-......         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            456788889888 99999833 3333333  233499999999887766665 599999998754433310         


Q ss_pred             -----ccCCCCEEEEE--EcCCC-CEEEEecCCCeEEEEECCcc-----cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          146 -----EGPGGGVEWVS--WHPRG-HIVLAGSEDSTVWMWNADRA-----AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       146 -----~~~~~~i~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                           ......+...+  -...+ ..|+++.. ..|.+|.....     +..+.+. ....+..++|.  ++.++.|..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                 01122344444  11233 34444444 68888877542     3455554 34678889998  5677777654


Q ss_pred             CeEEEEeCCCCce
Q 023018          213 ATLRVWNPKSGEN  225 (288)
Q Consensus       213 g~i~i~d~~~~~~  225 (288)
                      + ..+.|+.++..
T Consensus       158 ~-f~~idl~~~~~  169 (275)
T PF00780_consen  158 G-FYLIDLNTGSP  169 (275)
T ss_pred             c-eEEEecCCCCc
Confidence            4 67778775543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.93  E-value=0.0058  Score=47.99  Aligned_cols=171  Identities=16%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             eeeEeeccccC--cEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEecCCCe
Q 023018           98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDST  172 (288)
Q Consensus        98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~  172 (288)
                      +.+.+++ |..  -...+.|..++.++-+.+.-|  .|+.+|+.+++......-+.. ---.++.. +++++...-.++.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence            3445555 433  235677767787777777666  799999999987766543322 12233443 3445555667899


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTL  250 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  250 (288)
                      ..+||..+.+.+.++... +.-+.++  .+++.|+.+.....|+++|..+.+..+.+....  ..-..++-+.|- +|.+
T Consensus       112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I  187 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI  187 (264)
T ss_dssp             EEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred             EEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence            999999999888888643 4556666  467888888888999999999888777665431  112345566776 5766


Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          251 ALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+-.=....|...|..||++...+
T Consensus       188 yANVW~td~I~~Idp~tG~V~~~i  211 (264)
T PF05096_consen  188 YANVWQTDRIVRIDPETGKVVGWI  211 (264)
T ss_dssp             EEEETTSSEEEEEETTT-BEEEEE
T ss_pred             EEEeCCCCeEEEEeCCCCeEEEEE
Confidence            666656778999999999999876

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.93  E-value=4.9e-05  Score=40.23  Aligned_cols=38  Identities=39%  Similarity=0.818  Sum_probs=33.6

Q ss_pred             cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      +++..+..|...+.++.|.+.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=5.9e-05  Score=68.48  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=79.3

Q ss_pred             CCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccC
Q 023018          160 RGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       160 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      .+..++.|+..|.+...|+... .+...-....++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+......
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4668999999999999998653 222222234679999999999999999999999999999999888888765444445


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          239 LTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      +..+.+..++..++++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555666666777888877776  5544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.88  E-value=0.0087  Score=50.63  Aligned_cols=82  Identities=9%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-----------------CC-EEE
Q 023018          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-----------------ST-LAL  252 (288)
Q Consensus       191 ~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~-~l~  252 (288)
                      ...+.+++.+|.+++.++...=|.|.++|+.++..++.+++..  ...+.-+.....                 .. +++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            4457889999999998888888999999999998887777642  222222211111                 11 233


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEe
Q 023018          253 SGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      -+-.-|.|-||.+++|..+..+
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEE
Confidence            4566899999999999998876

>PHA03098 kelch-like protein; Provisional

Probab=97.85  E-value=0.002  Score=57.28  Aligned_cols=186  Identities=13%  Similarity=0.205  Sum_probs=93.1

Q ss_pred             CCcEEEEEeCCC------eEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 023018           76 DATLVATGGGDD------KGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLK  142 (288)
Q Consensus        76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~  142 (288)
                      ++.+++.|+.++      .+..||..+.+....-  .........+.  -++..++.|+.+     ..+..||..+++..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776543      4777888776653321  11111112222  256677777754     35778888776543


Q ss_pred             EE--eccCCCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          143 CT--LEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ..  +...........  -++++++.|+..      ..+..||+.+.+-..  .+....... ++.. .++..++.|+..
T Consensus       372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCcc
Confidence            22  111111122222  256777777732      458889987653221  111111111 1222 245555666542


Q ss_pred             --------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcE
Q 023018          213 --------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKV  270 (288)
Q Consensus       213 --------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~  270 (288)
                              ..+.+||+.+.+-. .+...+........+.+  ++.+++.|+.+     +.|.+||..+.+-
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCCCCcccceEEEecCCCCcee-eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence                    23888998865432 22221111111122222  66777777654     4789999887653

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=3.5e-05  Score=58.01  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEeeccCCCeEE-EE
Q 023018          122 LASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTC-GD  198 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~-~~  198 (288)
                      +...+.+|.|+-++++..+...... -+.....-+.   -+..+++|+.+|.|++|...... ....+......|-+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            3444567888777766543322111 1111111122   35689999999999999875221 11111112223332 22


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEEcC
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSG--SKDGSVHMVNIT  266 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~  266 (288)
                      -..++.+..+++.+|.|+.|++.-.+.+.....   |. .++..+..+..+.+|..+  +.|..++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~---h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ---HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeecc---ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            223556788999999999999987776655554   33 333333334344455554  555566666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.79  E-value=0.013  Score=47.70  Aligned_cols=202  Identities=15%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             EEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeeeEeecccc---C----cEEEEEEecCCCEEEEEe--CCC
Q 023018           69 SVACSPTDATLVATG----------GGDDKGFFWRINQGDWASEIQGHK---D----SVSSLAFSMDGQLLASGG--LDG  129 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~---~----~i~~~~~~~~~~~l~~~~--~dg  129 (288)
                      .+..+| +++.++++          -..-.|.+||..+..+...+.-..   .    ....+.++.+++++++..  -..
T Consensus        40 ~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   40 NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            356788 56665553          223459999999987776543211   1    123457888999877663  456


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEEEEe----eccCCCe-EEEEEcCCC
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMF----SGHGSSV-TCGDFTPDG  203 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~i-~~~~~~p~~  203 (288)
                      .|.|.|+..++.+..+..+.  +..+--.+ .+-|.+-|.||.+.-..+. .|+...+.    .....++ ..-.+...+
T Consensus       119 SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             eEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            89999999999988877553  33332222 3467788889999888887 45544222    1122222 233445555


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcee--EEEcCC-------CccccCeEEEEEcCCCCEEEEEeC---CC-------cEEEEE
Q 023018          204 KTICTGSDDATLRVWNPKSGENI--HVIRGH-------PYHTEGLTCLTISADSTLALSGSK---DG-------SVHMVN  264 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~iwd  264 (288)
                      ..++..+..|.|+-.|+......  ..+...       ....+...-+++++....|++.-.   +|       .|.++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            66666788999999988754321  122111       112233455778875555554321   11       699999


Q ss_pred             cCCCcEEEEe
Q 023018          265 ITTGKVCCLN  274 (288)
Q Consensus       265 ~~t~~~~~~~  274 (288)
                      +.+++++..+
T Consensus       276 ~~t~krv~Ri  285 (342)
T PF06433_consen  276 LKTHKRVARI  285 (342)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00018  Score=65.42  Aligned_cols=97  Identities=25%  Similarity=0.302  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018          118 DGQLLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (288)
Q Consensus       118 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (288)
                      .+..++.|+..|.+...|.... .+...=....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4557889999999999887654 211222234578999999999999999999999999999999999988877766555


Q ss_pred             EE---EcCCCCEEEEEeCCCe
Q 023018          197 GD---FTPDGKTICTGSDDAT  214 (288)
Q Consensus       197 ~~---~~p~~~~l~~~~~dg~  214 (288)
                      +-   +..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            43   4445667888877775

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.002  Score=54.50  Aligned_cols=143  Identities=15%  Similarity=0.228  Sum_probs=90.9

Q ss_pred             cCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-------EEEEecCCCeEEEEECCcc-cEEEEe
Q 023018          117 MDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-------IVLAGSEDSTVWMWNADRA-AYLNMF  187 (288)
Q Consensus       117 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~-~~~~~~  187 (288)
                      .+..+|+ .|.....++-.|+..|+.+..+..+...  -+.|.|..+       .-++|-.+..|.-.|.|-. ..+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3444443 4555667888899999999988877663  577777432       3445556666666676542 222222


Q ss_pred             eccCCCeEEEEEc----CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          188 SGHGSSVTCGDFT----PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       188 ~~~~~~i~~~~~~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      . ....++.-.|+    ....++++++..|-|++||.-.-.....+++   ....|..+..+.+|.++++.|. ..+.+-
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---lG~aIk~idvta~Gk~ilaTCk-~yllL~  629 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---LGDAIKHIDVTANGKHILATCK-NYLLLT  629 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---cccceeeeEeecCCcEEEEeec-ceEEEE
Confidence            1 11222222222    2456899999999999999653333333444   5678999999999998887764 467777


Q ss_pred             EcC
Q 023018          264 NIT  266 (288)
Q Consensus       264 d~~  266 (288)
                      |++
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.70  E-value=0.013  Score=46.59  Aligned_cols=147  Identities=21%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             cEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE-CCcccEE
Q 023018          109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYL  184 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  184 (288)
                      .+.+.+++++++.++...   ....+.++..  +.....+. ....+....|++++...++...+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678999999999776655   3345555543  33222222 223688889999987777766666666663 3333221


Q ss_pred             -EEeec--cCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CCceeE---EEcCCCccccCeEEEEEcCCCCEEE
Q 023018          185 -NMFSG--HGSSVTCGDFTPDGKTICTGS---DDATLRVWNPK---SGENIH---VIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       185 -~~~~~--~~~~i~~~~~~p~~~~l~~~~---~dg~i~i~d~~---~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                       .....  ....|+.+.+||+|.+++...   .++.|.+--+.   .+....   .+.........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             11111  112899999999999987665   34667665432   221111   1111111346789999999988877


Q ss_pred             EEeCCC
Q 023018          253 SGSKDG  258 (288)
Q Consensus       253 ~~~~dg  258 (288)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.69  E-value=0.0054  Score=54.61  Aligned_cols=192  Identities=19%  Similarity=0.315  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCC-----eEEEE
Q 023018           68 YSVACSPTDATLVATGGGD------DKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG-----LVQIW  134 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~  134 (288)
                      .+++..  ++.+.++|+.+      ..+..||..+.+....-.  ....... ++ .-+|...|+|+.||     ++-.|
T Consensus       326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEe
Confidence            344444  45788889888      347788887776554221  1111111 11 22677888998886     46678


Q ss_pred             eCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecCCC------eEEEEECCccc--EEEEeeccCCCeEEEEEcCCCC
Q 023018          135 DPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       135 d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      |..+.+....-.  ..........+  +|.+.++|+.++      ++..||..+.+  .+..+...........+  ++.
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~  477 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGK  477 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCE
Confidence            877665433221  12222222333  678888888654      57788887654  22222222222222222  466


Q ss_pred             EEEEEeCCC-----eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcE
Q 023018          205 TICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKV  270 (288)
Q Consensus       205 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~  270 (288)
                      ..+.|+.++     +|..||..+.+-.. +.........+..+.+  ++.+.++|+.||     +|..||..+.+-
T Consensus       478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~-v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  478 IYVVGGFDGTSALSSVERYDPETNQWTM-VAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEEECCccCCCccceEEEEcCCCCceeE-cccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence            777787776     37789988765332 2322112222222222  566777888776     577788776653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.65  E-value=0.021  Score=46.03  Aligned_cols=191  Identities=14%  Similarity=0.163  Sum_probs=109.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee--------------ccccCcEEEEE--EecCCC-EEEEEeCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------------QGHKDSVSSLA--FSMDGQ-LLASGGLD  128 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~~~~~i~~~~--~~~~~~-~l~~~~~d  128 (288)
                      +|..+...|.-+.+++.+  |+.++++++.........              ......+...+  -...+. +|+++. .
T Consensus        37 ~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k  113 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K  113 (275)
T ss_pred             eEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C
Confidence            399999998444444433  499999998764433311              11223444444  112333 444444 4


Q ss_pred             CeEEEEeCCCC-----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc------------C
Q 023018          129 GLVQIWDPSSG-----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH------------G  191 (288)
Q Consensus       129 g~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~  191 (288)
                      ..|.+|.....     +..+.+..+ ..+.+++|.  ++.++.|.. ....+.|+.++.....+...            .
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             CEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence            58888877653     455555544 568899998  567777775 55888898876544333211            1


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      .++..+.. +++.+|++.  +..-.+.|. .|++.+  .+.    -...+.++++.  ..+|++.+. +.|.||++.+|+
T Consensus       190 ~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  190 KPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             CceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCc
Confidence            23333333 345556543  333334444 454433  222    12344556654  347777655 559999999999


Q ss_pred             EEEEe
Q 023018          270 VCCLN  274 (288)
Q Consensus       270 ~~~~~  274 (288)
                      +++.+
T Consensus       259 lvQ~i  263 (275)
T PF00780_consen  259 LVQTI  263 (275)
T ss_pred             EEEEE
Confidence            99887

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.023  Score=46.40  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeecc-----ccCcEEEEEEecCCCEEEEEeC-----------CCeEEEEeCCCCce
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSMDGQLLASGGL-----------DGLVQIWDPSSGNL  141 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~  141 (288)
                      ..|+++.  .-+.+++..++..+..+..     .....+.+...|+|.+.++...           -|.|+.++. .+..
T Consensus        78 g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~  154 (307)
T COG3386          78 GRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV  154 (307)
T ss_pred             CeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE
Confidence            3444443  2366677765554322211     1234567888899886655433           133444443 5666


Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCc--c----c-EEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADR--A----A-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      ...+..+-...+.|+|||+++.|+.+.. .+.|.-|++..  +    + ....+....+..-.++...+|.+.+++...|
T Consensus       155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g  234 (307)
T COG3386         155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG  234 (307)
T ss_pred             EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence            6666655556788999999987777655 47888887752  1    1 1122222345556677778888776555554


Q ss_pred             -eEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEE
Q 023018          214 -TLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSG  254 (288)
Q Consensus       214 -~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~  254 (288)
                       .|.+|+.. |+++..+..   ....+++++|- |+.+.|++.
T Consensus       235 ~~v~~~~pd-G~l~~~i~l---P~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         235 GRVVRFNPD-GKLLGEIKL---PVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             ceEEEECCC-CcEEEEEEC---CCCCCccceEeCCCcCEEEEE
Confidence             89999988 888888876   33567777775 344555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.65  E-value=0.026  Score=46.93  Aligned_cols=219  Identities=12%  Similarity=0.111  Sum_probs=106.5

Q ss_pred             CCCCCeeEeecCCCCEEEEE-----EcCCCCcEEEEEeCCCe--EEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEE
Q 023018           52 QPDDSTHIFSGHSDEVYSVA-----CSPTDATLVATGGGDDK--GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (288)
                      ..+..+..|..+......+-     |.+++.++|+.+..+|.  +++.|+.+++..+.-.+.........++|+.+.++-
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence            34455555655544444443     44545567777766654  666778887765544432222224567788887766


Q ss_pred             EeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEc--CCCCEEEEecC----------------------CCeEEEEECCc
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGSE----------------------DSTVWMWNADR  180 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~----------------------dg~i~i~d~~~  180 (288)
                      ......|+-.|+.+.+....+..+....-...|.  .++..++-.-.                      ...|.-.|+++
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t  177 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT  177 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence            6556788999999998777777676656556664  34555433211                      12466667777


Q ss_pred             ccEEEEeeccCCCeEEEEEcCCC-CEEEEEeC---CC-eEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          181 AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSD---DA-TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       181 ~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ++....+. ....+..+.|+|.. ..|+.|-.   +. .-|||=+++ +...+.+.... ....+..=-|.|+|..|.--
T Consensus       178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEE
T ss_pred             CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEE
Confidence            76544443 56678889999944 44444432   11 125664432 33344443322 23445555799999876542


Q ss_pred             e-----CCCcEEEEEcCCCcEEE
Q 023018          255 S-----KDGSVHMVNITTGKVCC  272 (288)
Q Consensus       255 ~-----~dg~i~iwd~~t~~~~~  272 (288)
                      +     .+..|.-+++.|++...
T Consensus       256 ~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  256 SYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEETTT--EEEEEE-TTT--EEE
T ss_pred             eecCCCCceEEEeeCCCCCCceE
Confidence            2     24468888999887654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.64  E-value=0.033  Score=47.87  Aligned_cols=197  Identities=16%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             EEEEEEcCCCCcEEE-EEeCCC----eEEEEEccCCeeeEee-ccccCcEEEEEEecCCCEEEEEeCC-----------C
Q 023018           67 VYSVACSPTDATLVA-TGGGDD----KGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLD-----------G  129 (288)
Q Consensus        67 v~~~~~~~~~~~~l~-~~~~dg----~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-----------g  129 (288)
                      +...+++| +++++| +-+..|    .|+++|+.+++.+... ....  ...+.|.++++.|+....+           .
T Consensus       126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            44678999 555554 434444    4999999999776543 2221  2239999998876655432           2


Q ss_pred             eEEEEeCCCCcee--EEeccCCCC--EEEEEEcCCCCEEEEecC---C-CeEEEEECCcc-----cEEEEeeccCCCeEE
Q 023018          130 LVQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA-----AYLNMFSGHGSSVTC  196 (288)
Q Consensus       130 ~i~i~d~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~-----~~~~~~~~~~~~i~~  196 (288)
                      .|+.|.+.+....  ..+......  ...+..++++++|+....   + ..+++.++..+     ..........+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            4788888776433  444443332  678889999998776433   2 45888888764     333333323333333


Q ss_pred             EEEcCCCCEEEEEe---CCCeEEEEeCCCCce---eEEEcCCCcccc--CeEEEEEcCCCCEEE-EEeCCC--cEEEEEc
Q 023018          197 GDFTPDGKTICTGS---DDATLRVWNPKSGEN---IHVIRGHPYHTE--GLTCLTISADSTLAL-SGSKDG--SVHMVNI  265 (288)
Q Consensus       197 ~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~  265 (288)
                      +... .+.+++...   ..+.|...++.....   ...+..   +..  .+..+...  +.+|+ ....++  .|+++++
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEE--CCEEEEEEEECCccEEEEEEC
Confidence            4333 333333332   245677778876652   223332   333  34444443  33444 444443  6899999


Q ss_pred             CCCcEEE
Q 023018          266 TTGKVCC  272 (288)
Q Consensus       266 ~t~~~~~  272 (288)
                      ..+....
T Consensus       357 ~~~~~~~  363 (414)
T PF02897_consen  357 DDGKESR  363 (414)
T ss_dssp             T-TEEEE
T ss_pred             CCCcEEe
Confidence            9334333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=97.60  E-value=0.012  Score=51.49  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=91.0

Q ss_pred             CCcEEEEEeCCC-----eEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeEE--
Q 023018           76 DATLVATGGGDD-----KGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCT--  144 (288)
Q Consensus        76 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~--  144 (288)
                      ++.++++|+.++     .+..||..+.+....-  ....... +++ .-++...++|+.+  ..+..|+..+++....  
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            556777777543     4667887776543322  2111111 222 2366667777753  3577888766543322  


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCC---eEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      +.........+..  ++++.+.|+.++   .+..||.++.+-..  .+.........+.+  ++...+.|   |.+.+||
T Consensus       349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~yd  421 (480)
T PHA02790        349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYC  421 (480)
T ss_pred             CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEec
Confidence            2211212222222  677888887653   46788877653221  11111111112222  34444444   4577899


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGK  269 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~  269 (288)
                      ..+.+- ..+...+...... +++. -++++.+.||.+     ..+..||..+++
T Consensus       422 p~~~~W-~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        422 ESSNTW-TLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCCCcE-eEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            876543 2333221111222 2222 257777777754     357788887764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0017  Score=59.82  Aligned_cols=145  Identities=15%  Similarity=0.053  Sum_probs=95.7

Q ss_pred             CcEEEEEEecCCCEEEEE--eCCCeEEEEeCCCCceeE-----Eec------cCCCCEEEEEEcCCCC-EEEEecCCCeE
Q 023018          108 DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSSGNLKC-----TLE------GPGGGVEWVSWHPRGH-IVLAGSEDSTV  173 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~-----~~~------~~~~~i~~~~~~~~~~-~l~~~~~dg~i  173 (288)
                      -++..+...+++...++.  +.+-.|..||+++-....     -+.      .......++.|+|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            356666667776644433  344478899987532111     111      1223456788988433 56677788999


Q ss_pred             EEEECCcccE-EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc-cCeEEEEEcCCCCEE
Q 023018          174 WMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLA  251 (288)
Q Consensus       174 ~i~d~~~~~~-~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l  251 (288)
                      ++..+..... +..+ ......++++|+|.|..++.|-..|++.-|-. +++....+...+... ..|.+++|-....+|
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEE
Confidence            9887654322 2222 24567899999999999999999999999975 456666666554333 789999998766666


Q ss_pred             EEE
Q 023018          252 LSG  254 (288)
Q Consensus       252 ~~~  254 (288)
                      ++-
T Consensus       259 vvy  261 (1405)
T KOG3630|consen  259 VVY  261 (1405)
T ss_pred             EEe
Confidence            653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.58  E-value=0.023  Score=44.70  Aligned_cols=182  Identities=13%  Similarity=0.122  Sum_probs=113.5

Q ss_pred             EEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeeeEeeccccCc-EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           67 VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDS-VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ...+.|.. ++.++-+.+.-|  .|+.+++.+++......-...- --.++.. +++.....-.++...+||..+.+.+.
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            45677755 566666666656  6899999998876654421110 1123333 33444555678999999999998888


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--C---CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--G---SSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      ++.-. +.=..++.  ++..|+.+.....++++|..+.+....+...  .   ..++-+.|. +|...|=.-....|...
T Consensus       125 ~~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            87644 34566774  5677777777899999999888776666532  2   235566775 56666666677789999


Q ss_pred             eCCCCceeEEEcCCC------------ccccCeEEEEEcCCCCE-EEEE
Q 023018          219 NPKSGENIHVIRGHP------------YHTEGLTCLTISADSTL-ALSG  254 (288)
Q Consensus       219 d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~-l~~~  254 (288)
                      |..+|+....+....            ....-.+.+++.|.... +++|
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            999998877652110            11345789999986554 4555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.54  E-value=0.0092  Score=53.18  Aligned_cols=189  Identities=18%  Similarity=0.266  Sum_probs=103.9

Q ss_pred             CCcEEEEEeCCC------eEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCcee
Q 023018           76 DATLVATGGGDD------KGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLK  142 (288)
Q Consensus        76 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  142 (288)
                      .+.+++.|+..+      .+..||..++.......- ....-.+++.. ++...++|+.+      .++..||..+++..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            456777777763      578888887754443221 22223344443 55678888888      35778888877643


Q ss_pred             EE--eccCCCCEEEEEEcCCCCEEEEecCCCe-----EEEEECCccc--EEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          143 CT--LEGPGGGVEWVSWHPRGHIVLAGSEDST-----VWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       143 ~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      ..  +............  +|.+.++|+.||.     +-.||.++.+  .+..............+  +|...++|+.++
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~  438 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG  438 (571)
T ss_pred             ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence            32  1222222222222  6889999998864     7778876643  22222211111222222  566677777554


Q ss_pred             ------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcEEE
Q 023018          214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVCC  272 (288)
Q Consensus       214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~~~  272 (288)
                            .+..||..+..-. .+.......... .++. -++.+.+.||.++     .|..||..+.+-..
T Consensus       439 ~~~~l~sve~YDP~t~~W~-~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWT-LIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CccccceEEEEcCCCCcee-ecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence                  5788998876432 222111111111 1222 2577778888776     37788888765443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.035  Score=43.80  Aligned_cols=148  Identities=19%  Similarity=0.264  Sum_probs=97.4

Q ss_pred             CcEEEEEEecCCC-EEEEEeCCCe-EEEEeCCCCceeEEeccCCCC--EEEEEEcCCCCEEEEecCC-----CeEEEEEC
Q 023018          108 DSVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLKCTLEGPGGG--VEWVSWHPRGHIVLAGSED-----STVWMWNA  178 (288)
Q Consensus       108 ~~i~~~~~~~~~~-~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d-----g~i~i~d~  178 (288)
                      .....++|+|... -++.+-.-|+ ..++|....+....+....+.  .-.-.|||+|.+|++.-.|     |.|-+||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            3445678888655 4555555554 568898887766665443322  2234789999998876443     78999999


Q ss_pred             Ccc-cEEEEeeccCCCeEEEEEcCCCCEEEEEeCC------------------CeEEEEeCCCCceeEEEcCC-CccccC
Q 023018          179 DRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDD------------------ATLRVWNPKSGENIHVIRGH-PYHTEG  238 (288)
Q Consensus       179 ~~~-~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~-~~~~~~  238 (288)
                      +.+ +.+..+..|.-....+.|.+||+.|+.+...                  -++.+.|..+|+.+....-. ..+.-.
T Consensus       148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS  227 (366)
T COG3490         148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS  227 (366)
T ss_pred             ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence            865 5567788888888999999999999876531                  12444454555544332211 124456


Q ss_pred             eEEEEEcCCCCEEEEEe
Q 023018          239 LTCLTISADSTLALSGS  255 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~  255 (288)
                      +..+...++|.+++.+-
T Consensus       228 iRHld~g~dgtvwfgcQ  244 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeeeeCCCCcEEEEEE
Confidence            88888888888776553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.04  Score=45.84  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=82.7

Q ss_pred             EccCCeeeEeeccccCcEEEE-----EEecCCCEEEEEe-CC--CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018           93 RINQGDWASEIQGHKDSVSSL-----AFSMDGQLLASGG-LD--GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (288)
Q Consensus        93 ~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  164 (288)
                      |..++..+..+.........+     +|.++|++|+.++ .+  ..+.+.|+.+++..+.-.+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            455666666665433322222     4667887655544 44  467777889887666554433323356778888887


Q ss_pred             EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEeC
Q 023018          165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSD----------------------DATLRVWNP  220 (288)
Q Consensus       165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--p~~~~l~~~~~----------------------dg~i~i~d~  220 (288)
                      +.......++-.|+++.+....+......+-...|.  .++..++-.-.                      ...|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            766566789999999987766666666655545554  35555433211                      124666788


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCC-CCEEEEE
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISAD-STLALSG  254 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~  254 (288)
                      .+|+....+.    ....+..+.|+|. ..+|.-|
T Consensus       176 ~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fC  206 (386)
T PF14583_consen  176 KTGERKVVFE----DTDWLGHVQFSPTDPTLIMFC  206 (386)
T ss_dssp             TT--EEEEEE----ESS-EEEEEEETTEEEEEEEE
T ss_pred             CCCceeEEEe----cCccccCcccCCCCCCEEEEe
Confidence            8887655555    4566788999994 4444444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.44  E-value=0.032  Score=42.77  Aligned_cols=204  Identities=17%  Similarity=0.190  Sum_probs=110.7

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC---CEEEEEeCCCeEEEEeCCC--CceeEEecc---
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG---QLLASGGLDGLVQIWDPSS--GNLKCTLEG---  147 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~--~~~~~~~~~---  147 (288)
                      .+.++.+--..|.|.-||+...+....-- ...+...+.+--.+   .+.+.++..-.|.-||...  .+...++..   
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            45566666666788889987754332211 11223333343222   1333333344455577432  222232110   


Q ss_pred             --CCCCEEEEEEcCCCCEEEEecC-C---------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE-EeCCCe
Q 023018          148 --PGGGVEWVSWHPRGHIVLAGSE-D---------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDAT  214 (288)
Q Consensus       148 --~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~-~~~dg~  214 (288)
                        ...+.+.-..+|+|+++ .|.. +         |.++.|-.  +..+..+...-.--..++|+.+.+.++. -+.+-.
T Consensus       105 d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             hHHhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence              13345666778999884 3332 1         33444432  1122222222233467889887776654 455667


Q ss_pred             EEEEe--CCCCce-----eEEEcCCCccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEE
Q 023018          215 LRVWN--PKSGEN-----IHVIRGHPYHT-EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAY  282 (288)
Q Consensus       215 i~i~d--~~~~~~-----~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~  282 (288)
                      |.-||  ..+|..     +..++..+... ...-.++...+|.+.++.-..|+|..+|..||+.+..+    ..+++++|
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            76676  666542     22222211111 12234566778888888888999999999999999987    45667766


Q ss_pred             e
Q 023018          283 D  283 (288)
Q Consensus       283 ~  283 (288)
                      .
T Consensus       262 g  262 (310)
T KOG4499|consen  262 G  262 (310)
T ss_pred             c
Confidence            3

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.41  E-value=0.00059  Score=38.33  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      ....|..++|+|...+|+.++.+|.|.+|.+ +++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            4567999999999999999999999999999 55543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.00058  Score=51.64  Aligned_cols=136  Identities=13%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             EeCCCeEEEEEccCCeeeEee-ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeEEeccCCCCEEEE-EEcC
Q 023018           83 GGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWV-SWHP  159 (288)
Q Consensus        83 ~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~-~~~~  159 (288)
                      -+.+|.|.-+++...+....- .-+...   .....-+..+++|+.+|.|.+|...... ....+......|.++ .--.
T Consensus        36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~  112 (238)
T KOG2444|consen   36 TSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR  112 (238)
T ss_pred             ccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence            355677776666543221111 112222   1122235579999999999999876221 111122222223222 2223


Q ss_pred             CCCEEEEecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 023018          160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTG--SDDATLRVWNPK  221 (288)
Q Consensus       160 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p~~~~l~~~--~~dg~i~i~d~~  221 (288)
                      ++.+..+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++++.+  +.+..++.|++.
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            55688899999999999998887776666666 444444444455556555  666666666664

>PRK13684 Ycf48-like protein; Provisional

Probab=97.40  E-value=0.057  Score=44.89  Aligned_cols=152  Identities=11%  Similarity=0.067  Sum_probs=87.0

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEE-eCCCCceeE-EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE
Q 023018          107 KDSVSSLAFSMDGQLLASGGLDGLVQIW-DPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL  184 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  184 (288)
                      ...+.++.+.|++.+++++. .|.+..- + ..++.-. ........++.+.+.++++.++++. .|.+++=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence            45788999999887666654 5655432 2 2222222 2223445789999999888777664 476654223333221


Q ss_pred             EEeec----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 023018          185 NMFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV  260 (288)
Q Consensus       185 ~~~~~----~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (288)
                      .....    ....+..+.+.|++..++ ++.+|.+. .....++.................+.|..++..++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            11111    123578889998776555 45567654 34445555444432111234577788776666655 4567888


Q ss_pred             EEEE
Q 023018          261 HMVN  264 (288)
Q Consensus       261 ~iwd  264 (288)
                      ..|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7765

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.39  E-value=0.0087  Score=51.73  Aligned_cols=149  Identities=13%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeeeEeeccccCcEEEEEEecC----CCEEEEEeCCCeEEEEeCC
Q 023018           64 SDEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~  137 (288)
                      -.+|..++|.- +.+.+.|.-  ..|.+++=|   ...+.    .-..|..+.|.|-    ...|++.-....|.||.+.
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            35789999985 555555432  233333322   12222    3356889999984    3345555667899999874


Q ss_pred             -----CCceeEEeccCC-----CCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcCCCCE
Q 023018          138 -----SGNLKCTLEGPG-----GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       138 -----~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                           +++.+......-     --...+.|||....|++-+....-.+++++..  +....+ ...+.|.|.+|.+||++
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR  169 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence                 223322211110     01245789999888887776555556666543  333334 35678999999999999


Q ss_pred             EEEEeCCC-eEEEEeCC
Q 023018          206 ICTGSDDA-TLRVWNPK  221 (288)
Q Consensus       206 l~~~~~dg-~i~i~d~~  221 (288)
                      |+++-... .-+|||-.
T Consensus       170 LVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEeCCeEEEEEecCc
Confidence            87765432 45788853

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.35  E-value=0.0068  Score=51.51  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             EEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-------EEEEEeCCCeEEEEeCCCCc-eeEEec--c--C
Q 023018           81 ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-------LLASGGLDGLVQIWDPSSGN-LKCTLE--G--P  148 (288)
Q Consensus        81 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~-~~~~~~--~--~  148 (288)
                      ..|+....++-.|+..|+.+....-|...  -+.|.|..+       .-++|-.+..|.-.|.+... .+....  .  .
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            34555566777788888888888766554  466777432       22344444445545654322 222111  1  1


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~  221 (288)
                      .....+..-. .+.++|+|+..|.|++||--.......+.+....|..+..+.+|.++++.+. ..|.+-|++
T Consensus       562 Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         562 KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            1122222222 3458999999999999996544555556677788999999999999877764 466677764

>PHA02713 hypothetical protein; Provisional

Probab=97.33  E-value=0.032  Score=49.81  Aligned_cols=171  Identities=12%  Similarity=0.062  Sum_probs=85.2

Q ss_pred             eEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeEE--eccCCCCEEEEEE
Q 023018           88 KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKCT--LEGPGGGVEWVSW  157 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~  157 (288)
                      .+..||..+.+....  +...... .+++. -++..+++|+.+      ..+..||..++.....  +.........+.+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            467788877654332  2211111 12222 356667777743      3477888877653221  1111222222222


Q ss_pred             cCCCCEEEEecCCC-----eEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCC-----------------
Q 023018          158 HPRGHIVLAGSEDS-----TVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDA-----------------  213 (288)
Q Consensus       158 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg-----------------  213 (288)
                        ++++++.|+.++     .+..||..+.+-  +..+.........+.+  ++...+.|+.++                 
T Consensus       351 --~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 --DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             --CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence              677888888754     478899876532  2222211111122222  566667776542                 


Q ss_pred             ------eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCC
Q 023018          214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITT  267 (288)
Q Consensus       214 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~t  267 (288)
                            .+..||+.+.+- ..+......... .+++ .-++.+.+.|+.+      ..+..||..+
T Consensus       427 ~~~~~~~ve~YDP~td~W-~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIW-ETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccccceEEEECCCCCeE-eecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence                  477888876542 222221101111 1122 2256676777654      2467899887

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.31  E-value=0.0012  Score=37.03  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW   99 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   99 (288)
                      ...|.+++|+| ...++|.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45699999999 7889999999999999998 4443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.30  E-value=0.082  Score=44.61  Aligned_cols=216  Identities=13%  Similarity=0.125  Sum_probs=101.4

Q ss_pred             CCCeeEee-cCC-CCEEEEEEcC----------CCCc-EEEEEeCCCeEEEEEccC----CeeeEeecc---cc----Cc
Q 023018           54 DDSTHIFS-GHS-DEVYSVACSP----------TDAT-LVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DS  109 (288)
Q Consensus        54 ~~~~~~~~-~h~-~~v~~~~~~~----------~~~~-~l~~~~~dg~i~iw~~~~----~~~~~~~~~---~~----~~  109 (288)
                      .+.++.+. .+. +.....-|+.          ...+ +++-|-..++|+|.|+.+    .+..+++..   +.    ..
T Consensus        52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~  131 (461)
T PF05694_consen   52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR  131 (461)
T ss_dssp             TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred             ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence            34555543 332 4666666651          1334 444555788999999974    344444432   11    11


Q ss_pred             EEEEEEecCCCEEEEEeC------CCeEEEEeCCCCceeEEeccC---CCCEEEEEEcCCCCEEEEecC-----------
Q 023018          110 VSSLAFSMDGQLLASGGL------DGLVQIWDPSSGNLKCTLEGP---GGGVEWVSWHPRGHIVLAGSE-----------  169 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-----------  169 (288)
                      -..+..-|+|+.++++-.      -|-+.++|-.+..........   ...-..+.|.|..+.+++...           
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~  211 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN  211 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence            122334478888877632      256888888877777666542   234567888898888887543           


Q ss_pred             ---------CCeEEEEECCcccEEEEeeccCC--CeEEEEEcC--CCCE-EEEEeCCCeEEEEeC-CCCc----eeEEEc
Q 023018          170 ---------DSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTP--DGKT-ICTGSDDATLRVWNP-KSGE----NIHVIR  230 (288)
Q Consensus       170 ---------dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~p--~~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~  230 (288)
                               ..++.+||+.+.+.++++.....  .+..+.|..  ...+ ++.+...++|..|-. ..+.    .+-.+.
T Consensus       212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence                     34799999999999999875432  344566654  4444 333334555554432 3332    122221


Q ss_pred             CCC-----c---------cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 023018          231 GHP-----Y---------HTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGK  269 (288)
Q Consensus       231 ~~~-----~---------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~  269 (288)
                      ..+     .         ...-|+.+.+|.|.++|..++. .|.|+.||+..-.
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            110     0         0234788999999999987765 8999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.30  E-value=0.018  Score=51.27  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCC------
Q 023018          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP--DGKTICTGSDDATLRVWNPK------  221 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p--~~~~l~~~~~dg~i~i~d~~------  221 (288)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-. .....|..+.|..  +++.+++.+..+.|.+|--.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34445455545555555555679999999886443322 3577899999964  88888888889999998531      


Q ss_pred             ---CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          222 ---SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       222 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                         +..+++.+........+|....|.++|.+++++  ++.+.|++-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence               122334443222234678899999999776544  356888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.06  Score=42.78  Aligned_cols=198  Identities=12%  Similarity=0.162  Sum_probs=117.9

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      |-...|.++.|+|+.. .|++......-.||=...|+.+.+++-. -...-.+.+..++++.++--.++.+.++.+....
T Consensus        83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3344599999999554 5555555566667777778888886521 1223457787777777777788888888776553


Q ss_pred             eeEEe----------ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-E--EEEeecc-------CCCeEEEEEc
Q 023018          141 LKCTL----------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-Y--LNMFSGH-------GSSVTCGDFT  200 (288)
Q Consensus       141 ~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~~-------~~~i~~~~~~  200 (288)
                      ....+          .....+.-.++|.|....|+.+-.-.-+.||.+.... .  +.....+       -..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            22211          1124568899999988888887766666666654322 1  1111111       2346777888


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC---c---cccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          201 P-DGKTICTGSDDATLRVWNPKSGENIHVIRGHP---Y---HTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       201 p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      + .+..|+.+..++.+.-.|.. |..+..+.-..   +   .....-.++..++|.+.++ |+-+-.+.
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv-SEPnlfy~  308 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV-SEPNLFYR  308 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE-ecCCccee
Confidence            7 45566777778888888875 44444332211   1   1122345666666654433 34444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.29  E-value=0.025  Score=49.06  Aligned_cols=149  Identities=13%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             cCcEEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCC----CCEEEEecCCCeEEEEECC
Q 023018          107 KDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~  179 (288)
                      -.++..++|. ||+.++-..   .+|.+++=|   .+.+..|    ..|..++|.|-    ...+++......|.+|.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3578899996 666544332   344444322   2233333    34889999984    3345555556899999875


Q ss_pred             c-----ccEEEEeecc---CCC--eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCC
Q 023018          180 R-----AAYLNMFSGH---GSS--VTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       180 ~-----~~~~~~~~~~---~~~--i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                      -     ++.+.....+   .-+  ...+.|+|....|++-.....-.+++++....  ...+.    ..+.|.|.+|.+|
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~D  166 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTKD  166 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----CCceEEEEEecCc
Confidence            2     2322221111   111  24567999888887766555444666653322  22233    5678999999999


Q ss_pred             CCEEEEE-eCCCcEEEEEcCC
Q 023018          248 STLALSG-SKDGSVHMVNITT  267 (288)
Q Consensus       248 ~~~l~~~-~~dg~i~iwd~~t  267 (288)
                      |+.|+++ ++.=.-++||-..
T Consensus       167 G~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CCEEEEEeCCeEEEEEecCch
Confidence            9887765 3334578888543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.26  E-value=0.09  Score=48.52  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=97.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCC--------CEEEEEEcC----------------CCCEEEEecCCCeEE
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--------GVEWVSWHP----------------RGHIVLAGSEDSTVW  174 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~i~~~~~~~----------------~~~~l~~~~~dg~i~  174 (288)
                      +..++.++.++.|.-.|..+|+.+.++.....        ..+.+++..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45777778889999999999998887654221        122233321                234788899999999


Q ss_pred             EEECCcccEEEEeeccCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceeEEE
Q 023018          175 MWNADRAAYLNMFSGHGSSV-------------TCGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI  229 (288)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i-------------~~~~~~p--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  229 (288)
                      -.|.++|+.+..+.. .+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876642 1111             1112223  2456666643          688999999999988776


Q ss_pred             cCCCcc--------------ccCe-EEEEEcCCCCEEEEEe------------------CCCcEEEEEcCCCcEEEEecc
Q 023018          230 RGHPYH--------------TEGL-TCLTISADSTLALSGS------------------KDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       230 ~~~~~~--------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      ......              ...+ ..+++++...+++.+.                  ..+.|.-.|+.||+..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            421000              0011 2344555444443321                  235688889999998877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.13  E-value=0.076  Score=40.78  Aligned_cols=143  Identities=11%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             cCcEEEEEEecCCCEEEEEeC---------CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE-ecCCCeEEEE
Q 023018          107 KDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW  176 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~  176 (288)
                      +...++-..+|+|++++-.-.         .|.++.|-.. ++ +..+...-+--+.++|+.+.+.+.. -+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            445667778999998433222         2445555322 11 2222223334567899887665544 4556778777


Q ss_pred             E--CCccc-----EEEEeec---cC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc
Q 023018          177 N--ADRAA-----YLNMFSG---HG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS  245 (288)
Q Consensus       177 d--~~~~~-----~~~~~~~---~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~  245 (288)
                      |  ..+|.     .+..++.   .. ...-.++...+|.+.+++-..|+|...|+.+|+.+..+.-   ....+++++|-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg  262 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG  262 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence            7  55543     2222221   11 1123455566788888888899999999999999998886   46789999996


Q ss_pred             C-CCCEEEEE
Q 023018          246 A-DSTLALSG  254 (288)
Q Consensus       246 ~-~~~~l~~~  254 (288)
                      - +-..|++.
T Consensus       263 Gkn~d~~yvT  272 (310)
T KOG4499|consen  263 GKNLDILYVT  272 (310)
T ss_pred             CCCccEEEEE
Confidence            4 33444443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.12  E-value=0.099  Score=41.90  Aligned_cols=205  Identities=14%  Similarity=0.205  Sum_probs=119.3

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-------CCeeeEeecc-----ccCcEEEEEEecCCC------------E
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L  121 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-------~~~~~~~~~~-----~~~~i~~~~~~~~~~------------~  121 (288)
                      .-+.|+++| .+.+-++....+...+|+..       ....+..+..     .....+.+.|+....            .
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            457899999 56677777777999999986       1223333331     123557777764222            3


Q ss_pred             EEEEeCCCeEEEEeCCCCce-----eEEecc-CCC-CEEEEEEcC--CCCEEEEe-cCCCeEEEEECCcccEEEE---ee
Q 023018          122 LASGGLDGLVQIWDPSSGNL-----KCTLEG-PGG-GVEWVSWHP--RGHIVLAG-SEDSTVWMWNADRAAYLNM---FS  188 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~-----~~~~~~-~~~-~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~---~~  188 (288)
                      ++.++.+|+|.-|...-...     ...+.. ..+ .-..+++..  .+.+|+.+ -..++|.+||-.-.+ +..   +.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCcc
Confidence            67788999999998543322     122221 112 234455553  34555554 457889999853222 111   11


Q ss_pred             ccC-----CC-----------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC------
Q 023018          189 GHG-----SS-----------VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------  246 (288)
Q Consensus       189 ~~~-----~~-----------i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~------  246 (288)
                      ...     .+           |+-..-.+++..=+.|..-|.|-+||+. |+.++++.... .-...+.|+..|      
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-RLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-cccCCceeeeChhhhCCC
Confidence            100     00           1111111122222233445789999985 77888775322 344567777765      


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          247 DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.+|+---.||+|..||..+|+.+-.+
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeee
Confidence            4677777777999999999999877666

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=97.02  E-value=0.14  Score=42.66  Aligned_cols=151  Identities=19%  Similarity=0.178  Sum_probs=84.5

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFW-RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ...+.++.+.| ++.+++++. .|.+..- +-...........-...++++.+.++++.++++ ..|.+.+-....+..-
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            34688888888 666665554 4655432 211112222223345678999999998876665 4676654333444332


Q ss_pred             EEeccC----CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          143 CTLEGP----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       143 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      .....+    ...+..+.+.+++..++++ .+|.+.. ....++.-...   .......+.+.|..+++.++ .+..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence            222211    2347889999877765555 4565553 33333322222   12223577777776655555 4557888


Q ss_pred             EEEeC
Q 023018          216 RVWNP  220 (288)
Q Consensus       216 ~i~d~  220 (288)
                      ..|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            77753

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.01  E-value=0.12  Score=43.54  Aligned_cols=139  Identities=17%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             EEEEEEecCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeE
Q 023018          110 VSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  173 (288)
                      ...|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++ +++ +... .|
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i   92 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI   92 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence            45788999988666642           223 677775432  22  223443334456889999888 444 4443 45


Q ss_pred             EEE-ECCcc-----c---EEEEeec----cCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCC
Q 023018          174 WMW-NADRA-----A---YLNMFSG----HGSSVTCGDFTPDGKTICTGSDD-------------------ATLRVWNPK  221 (288)
Q Consensus       174 ~i~-d~~~~-----~---~~~~~~~----~~~~i~~~~~~p~~~~l~~~~~d-------------------g~i~i~d~~  221 (288)
                      ..| +....     +   .+..+..    +......+.|.|+|.+.++-+..                   |.|.-++..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            444 44221     1   1122222    12346789999999876654411                   445666665


Q ss_pred             CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      ++. +..+..   .......++|+|+|.++++-.
T Consensus       173 g~~-~e~~a~---G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGK-LRVVAH---GFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCe-EEEEec---CcCCCccceECCCCCEEEEcc
Confidence            443 333332   234457899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.99  E-value=0.18  Score=42.71  Aligned_cols=183  Identities=12%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             EcCCCCcEEEEE--e----CCCeEEEEEccCCeeeEeeccc---cCcEEEEEEecCCCEEEEEeC---------------
Q 023018           72 CSPTDATLVATG--G----GDDKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGL---------------  127 (288)
Q Consensus        72 ~~~~~~~~l~~~--~----~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~---------------  127 (288)
                      .-| ++.+++++  .    .-|-+.+.|-++..........   ..--+++.|.|..+.++|+..               
T Consensus       137 clp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  137 CLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             E-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred             ecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence            344 56566654  2    2345778887776666655432   223467788898888888643               


Q ss_pred             -----CCeEEEEeCCCCceeEEeccCCC--CEEEEEEcC--CCCE-EEEecCCCeEEEEEC-Cccc----EEEEeec---
Q 023018          128 -----DGLVQIWDPSSGNLKCTLEGPGG--GVEWVSWHP--RGHI-VLAGSEDSTVWMWNA-DRAA----YLNMFSG---  189 (288)
Q Consensus       128 -----dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~~~---  189 (288)
                           ..++++||+.+.+.++++.-...  ....+.|..  ...+ ++.+.-.++|..|-- ..+.    .+..+..   
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence                 35799999999999998875532  355666654  3333 333334455655533 3321    1111211   


Q ss_pred             --------------cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEE---c-CCC------------ccccC
Q 023018          190 --------------HGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVI---R-GHP------------YHTEG  238 (288)
Q Consensus       190 --------------~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~-~~~------------~~~~~  238 (288)
                                    -..-|+.|.+|.|.++|+.++ ..|.|+.||+..-...+..   . +..            ...+.
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence                          124478999999999987665 6899999999754332221   1 100            01223


Q ss_pred             eEEEEEcCCCCEEEEEe
Q 023018          239 LTCLTISADSTLALSGS  255 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~  255 (288)
                      ..-+..|.||+.|+..+
T Consensus       376 PqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---EEE-TTSSEEEEE-
T ss_pred             CCeEEEccCCeEEEEEe
Confidence            46678899998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.90  E-value=0.25  Score=45.70  Aligned_cols=173  Identities=16%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             EEEEEccCCeeeEeeccc----cCcEEEEEEecC-CCEEEEEeC----------CCeEEEEeCCCCceeEEecc--CCCC
Q 023018           89 GFFWRINQGDWASEIQGH----KDSVSSLAFSMD-GQLLASGGL----------DGLVQIWDPSSGNLKCTLEG--PGGG  151 (288)
Q Consensus        89 i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~--~~~~  151 (288)
                      ++++|-.+.+.+......    ...|.++.|..+ +.++++|..          .|.|.+|.....+.+.....  -.+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            566666665544433211    123445557766 667887753          47888888776433333221  2233


Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceeEEE
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP--KSGENIHVI  229 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~--~~~~~~~~~  229 (288)
                      +.++..- +|+++|.  -+..|++|+..+.+.++.-..+..++..+...-.|+.+++|..-+.+.+.-.  ..|+....-
T Consensus       832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence            4444332 4555544  4478999999888777777778889999999889999999998777665443  333333222


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                        ...+....+++.+-.+. .++.+..+|.+++....+
T Consensus       909 --rD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  909 --RDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             --hhhCccceeeEEEecCc-eEEeecccccEEEEEecC
Confidence              22356667777766544 445566778888776553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.88  E-value=0.22  Score=42.07  Aligned_cols=193  Identities=19%  Similarity=0.164  Sum_probs=110.2

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccc--cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC-CEEEE
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWV  155 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~  155 (288)
                      .++++..+|.|.-.|..++..+.....-  ...+..-.+..+|+ |++++.+|.++.+|..++..+........ .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            4555677888888888887755433211  12222222333565 77888899999999989988888776651 11111


Q ss_pred             EEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC---CeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEc
Q 023018          156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       156 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  230 (288)
                      ..- ....++.++.++.+...+..+++.+..+.....   .+..--. .....++.+..  ++.+.-+|+.+|.......
T Consensus       149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            111 223455555779999999988887766543221   1111000 12344555555  6678888888887766532


Q ss_pred             CCCccc-cCe---EEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          231 GHPYHT-EGL---TCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       231 ~~~~~~-~~v---~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ...... ..+   ..+...+  -+.-++.++.+|.+...+..+|+.+...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence            111000 001   0111101  1122356677888999999999888766

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.78  E-value=0.3  Score=42.01  Aligned_cols=201  Identities=15%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             EEEcCCCCcEEEEEeCC----------CeEEEEEccCCeee--EeeccccCc--EEEEEEecCCCEEEEEeC---C-CeE
Q 023018           70 VACSPTDATLVATGGGD----------DKGFFWRINQGDWA--SEIQGHKDS--VSSLAFSMDGQLLASGGL---D-GLV  131 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~~~~~---d-g~i  131 (288)
                      +.|.+++..++++....          ..|+.|.+.+....  ..+......  ...+..++++++|+..+.   + ..+
T Consensus       175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v  254 (414)
T PF02897_consen  175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV  254 (414)
T ss_dssp             EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred             EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence            89999555556655332          23788888765432  334433332  567888999998775432   2 457


Q ss_pred             EEEeCCCC----ceeEEeccCCCCE-EEEEEcCCCCEEEEec---CCCeEEEEECCcccE---EEEeeccCCCeEEEEEc
Q 023018          132 QIWDPSSG----NLKCTLEGPGGGV-EWVSWHPRGHIVLAGS---EDSTVWMWNADRAAY---LNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       132 ~i~d~~~~----~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~  200 (288)
                      .+.++..+    .....+......+ ..+... .+.+++...   ..+.|...++.....   ...+..+...+.-..+.
T Consensus       255 ~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  255 YLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             EEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             EEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence            88888764    2233333333334 334443 444444433   246777788876542   22444454433333334


Q ss_pred             CCCCEEEEEe-CCC--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCcEEEE
Q 023018          201 PDGKTICTGS-DDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSK---DGSVHMVNITTGKVCCL  273 (288)
Q Consensus       201 p~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~---dg~i~iwd~~t~~~~~~  273 (288)
                      ..+++|+... .++  .|+++++..+.....+...  ..+.|..+...+++..+ +..++   -++++.||+.+++....
T Consensus       334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  334 LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             EECCEEEEEEEECCccEEEEEECCCCcEEeeecCC--cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            4455655543 344  5889999844455555443  23345566555555433 33322   46899999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.74  E-value=0.24  Score=40.38  Aligned_cols=199  Identities=14%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-e
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL-K  142 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~  142 (288)
                      ..++.|..  ...+++|. .| +.+...+.++.=..+.   .-......+....++..+++ +..|.|+.= ...++. .
T Consensus        64 l~~I~f~~--~~g~ivG~-~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~T-~DgG~tW~  137 (302)
T PF14870_consen   64 LNSISFDG--NEGWIVGE-PG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYRT-TDGGKTWQ  137 (302)
T ss_dssp             EEEEEEET--TEEEEEEE-TT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEEE-SSTTSSEE
T ss_pred             EEEEEecC--CceEEEcC-Cc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEEe-CCCCCCee
Confidence            56777764  34455544 35 3333333333222221   11223334444444433333 445654432 233332 2


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-C
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP-K  221 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~-~  221 (288)
                      .......+.+..+..+++|++++++.......-|+.-...-...-+.....|..|.|.|++...+++ ..|.|++=+. .
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~  216 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD  216 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence            3334455778999999999999999886666788765432222222346789999999997765544 8888888772 2


Q ss_pred             CCceeEE-EcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          222 SGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       222 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ....... +.........+..++|.+++...++|+ .|.+ +.....|+--...
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~  268 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKD  268 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceEC
Confidence            2222111 111111344588999999877777665 4443 3455566544433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.72  E-value=0.5  Score=43.88  Aligned_cols=150  Identities=12%  Similarity=0.105  Sum_probs=97.4

Q ss_pred             EEEEEEcCCCCcEEEEEeC----------CCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           67 VYSVACSPTDATLVATGGG----------DDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      |.++.|..+.+.++++|+.          .|.|.++.+.....+.....  -.+.+.++..- +|+++|.-  ...|++|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLy  853 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLY  853 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEE
Confidence            4455577644667777743          57888888877443333322  23455554432 56666554  5689999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEee-ccCCCeEEEEEcCCCCEEEEEeC
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS-GHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +..+.+.++.-..+..++..+...-.+..+++|..-+.+.+...+..+  ..-.-+ .+....+++.+-.+ ..++-+..
T Consensus       854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae~  932 (1096)
T KOG1897|consen  854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAEN  932 (1096)
T ss_pred             EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeecc
Confidence            999887777766788889999999999999999988877766554432  332222 35566777776644 44555566


Q ss_pred             CCeEEEEeC
Q 023018          212 DATLRVWNP  220 (288)
Q Consensus       212 dg~i~i~d~  220 (288)
                      +|.+.+...
T Consensus       933 ~gNlf~v~~  941 (1096)
T KOG1897|consen  933 SGNLFTVRK  941 (1096)
T ss_pred             cccEEEEEe
Confidence            777766543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.66  E-value=0.24  Score=39.41  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=87.0

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe-CCCCcee-E
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLK-C  143 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-~  143 (288)
                      .+...++++++..+.++...++.-.+|-...+....... ....+....|++++...+....+...+++. ...+... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999544444444223333334333333223322 233778889999987777666666666663 3333222 1


Q ss_pred             EeccC--CCCEEEEEEcCCCCEEEEec---CCCeEEEEECC---cc------cEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          144 TLEGP--GGGVEWVSWHPRGHIVLAGS---EDSTVWMWNAD---RA------AYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       144 ~~~~~--~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      .+...  .+.|..+.++|+|..++...   .++.|.+--+.   .+      .++.........++.+.|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence            22222  12799999999999887766   34777776543   22      1122222335678999999998877666


Q ss_pred             eCCC
Q 023018          210 SDDA  213 (288)
Q Consensus       210 ~~dg  213 (288)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            5444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.64  E-value=0.22  Score=42.07  Aligned_cols=142  Identities=11%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             CCEEEEEEcCCCCcEEEEEe-----------CCC-eEEEEEccC--Ce--eeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           65 DEVYSVACSPTDATLVATGG-----------GDD-KGFFWRINQ--GD--WASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      .....|+|.+ .++++++-.           ..+ .|.+++-.+  ++  ....+...-...+.+++.+++  |++++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            3457789998 666665542           223 677776432  22  223333223345788998888  4444444


Q ss_pred             CeEEEEeCCCC-----cee---EEecc----CCCCEEEEEEcCCCCEEEEecCC-------------------CeEEEEE
Q 023018          129 GLVQIWDPSSG-----NLK---CTLEG----PGGGVEWVSWHPRGHIVLAGSED-------------------STVWMWN  177 (288)
Q Consensus       129 g~i~i~d~~~~-----~~~---~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------g~i~i~d  177 (288)
                      ...++.+....     +..   ..+..    +......++|.|+|.+.++-+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            44444454321     211   11222    13347789999999876655421                   4456666


Q ss_pred             CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      ...++. ..+...-.....++|+|+|+++++-.
T Consensus       171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            554432 23322223456899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=96.62  E-value=0.14  Score=45.66  Aligned_cols=144  Identities=14%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeE
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC  143 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  143 (288)
                      ++.+++.||.+     ..+..||..+.+....-.- +...-.+++ .-+++.++.|+..      ..+..||+.+++...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            44566667654     3467778776654332111 111111222 2256666666632      457889988765433


Q ss_pred             Ee--ccCCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccEE--EEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          144 TL--EGPGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       144 ~~--~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      .-  +........+.  .++.+++.|+.+        ..+.+||..+.+-.  ..+.........+.+  ++..++.|+.
T Consensus       421 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~  496 (534)
T PHA03098        421 GSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGD  496 (534)
T ss_pred             cCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence            21  11111122222  256677777643        23888998765422  211111111122222  5566666664


Q ss_pred             C-----CeEEEEeCCCCc
Q 023018          212 D-----ATLRVWNPKSGE  224 (288)
Q Consensus       212 d-----g~i~i~d~~~~~  224 (288)
                      +     ..+.+||+.+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            3     467888887553

>PLN02193 nitrile-specifier protein

Probab=96.60  E-value=0.44  Score=41.75  Aligned_cols=149  Identities=10%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCceeEEecc---CCCC-EEEEEEcCCCCEEEEecCCC-----eEEEEECCcccE
Q 023018          118 DGQLLASGGLD-----GLVQIWDPSSGNLKCTLEG---PGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAY  183 (288)
Q Consensus       118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~---~~~~-i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~  183 (288)
                      ++.+++.|+.+     ..+..||+.+.+.......   +... -.+++. -++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566666654     3578889887654332111   1111 112222 2566777777543     467788766542


Q ss_pred             EEEee-----ccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEEcCC--CccccCeEEEEEcCCCCEEE
Q 023018          184 LNMFS-----GHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       184 ~~~~~-----~~~~~i~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~  252 (288)
                      ...-.     ..........+  +++.++.++.+    ..+.+||+.+.+- ..+...  ........+++ .-++++++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~-~~~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASA-AVGKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEE-EECCEEEE
Confidence            21110     00111111222  46666776655    4588999987643 223211  00111112222 22566777


Q ss_pred             EEeCC--------------CcEEEEEcCCCcEE
Q 023018          253 SGSKD--------------GSVHMVNITTGKVC  271 (288)
Q Consensus       253 ~~~~d--------------g~i~iwd~~t~~~~  271 (288)
                      .|+..              ..+.+||+.+.+-.
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            77743              24889998876543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.60  E-value=0.16  Score=46.47  Aligned_cols=72  Identities=25%  Similarity=0.446  Sum_probs=45.8

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEeCCC---------Cce--eE-Ee--------ccCCCCEEEEEEcCC---CCEE
Q 023018          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSS---------GNL--KC-TL--------EGPGGGVEWVSWHPR---GHIV  164 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~~l  164 (288)
                      -.|..+.++|+|++++..+..|.+.+.=.+.         ++.  .. .+        ..+...|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688899999999999888776544432211         111  11 11        123346777888874   4677


Q ss_pred             EEecCCCeEEEEECC
Q 023018          165 LAGSEDSTVWMWNAD  179 (288)
Q Consensus       165 ~~~~~dg~i~i~d~~  179 (288)
                      ++-+.|+++++||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            777778888888874

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.56  E-value=0.4  Score=40.80  Aligned_cols=149  Identities=13%  Similarity=0.174  Sum_probs=83.0

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-----EE
Q 023018          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YL  184 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~  184 (288)
                      ...+..++++.+++++.....++-||-....-...-......+..+.+.+++..++++. .|.+..- ...++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~~S-~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLYVS-KGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEEEe-cCCCCcccccce
Confidence            34455667777776665433333344221111112223345689999999988877664 4555442 22332     12


Q ss_pred             EEeec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          185 NMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       185 ~~~~~--~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      .....  ....+..+.|.+++..+++ +..|.+.... ..|+..............++.+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            22221  2235888999887665554 5577666553 4555544443222234568899988776666554 6777765


Q ss_pred             E
Q 023018          263 V  263 (288)
Q Consensus       263 w  263 (288)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            4

>PLN02153 epithiospecifier protein

Probab=96.55  E-value=0.37  Score=40.22  Aligned_cols=188  Identities=13%  Similarity=0.146  Sum_probs=88.8

Q ss_pred             CCcEEEEEeCC-------CeEEEEEccCCeeeEeecc---ccC---cEEEEEEecCCCEEEEEeCC-----CeEEEEeCC
Q 023018           76 DATLVATGGGD-------DKGFFWRINQGDWASEIQG---HKD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPS  137 (288)
Q Consensus        76 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~  137 (288)
                      ++.+++.|+.+       ..+.+||+.+.+....-..   ...   ....+.+  ++++++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            44566667653       2577888877654432110   010   1122222  45566676643     357788987


Q ss_pred             CCceeEE--ecc---CCCCEEEEEEcCCCCEEEEecCC-----------CeEEEEECCcccEEE--Eee---ccCCCeEE
Q 023018          138 SGNLKCT--LEG---PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAAYLN--MFS---GHGSSVTC  196 (288)
Q Consensus       138 ~~~~~~~--~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~--~~~---~~~~~i~~  196 (288)
                      +.+-...  +..   +.......+..-++++++.|+.+           ..+.+||+.+.+-..  ...   ...... +
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~  188 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-G  188 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-e
Confidence            7643321  110   11111112222356677777753           247788887653221  110   001111 1


Q ss_pred             EEEcCCCCEEEEEeCC-------------CeEEEEeCCCCceeEEEcCC-C-ccccCeEEEEEcCCCCEEEEEeCC----
Q 023018          197 GDFTPDGKTICTGSDD-------------ATLRVWNPKSGENIHVIRGH-P-YHTEGLTCLTISADSTLALSGSKD----  257 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~d----  257 (288)
                      ++. -++++++.++.+             ..+.+||+.+.+-. .+... . .......+++ ..++.+++.|+..    
T Consensus       189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~  265 (341)
T PLN02153        189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT-EVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDL  265 (341)
T ss_pred             EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE-eccccCCCCCCcceeeeE-EECCEEEEECcccCCcc
Confidence            221 245555555432             35888998765432 22210 0 0111112222 2246677777741    


Q ss_pred             ----------CcEEEEEcCCCc
Q 023018          258 ----------GSVHMVNITTGK  269 (288)
Q Consensus       258 ----------g~i~iwd~~t~~  269 (288)
                                ..++.||+.+.+
T Consensus       266 ~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        266 KGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             ccccccccccccEEEEEcCccE
Confidence                      267888887764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.51  E-value=0.36  Score=43.80  Aligned_cols=112  Identities=13%  Similarity=0.212  Sum_probs=72.7

Q ss_pred             EEEEEEcC--CCCEEEEecCCCeEEEEECCc-------c-------------cEEEEeeccCCCeEEEEEc--CCCCEEE
Q 023018          152 VEWVSWHP--RGHIVLAGSEDSTVWMWNADR-------A-------------AYLNMFSGHGSSVTCGDFT--PDGKTIC  207 (288)
Q Consensus       152 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--p~~~~l~  207 (288)
                      |+.|....  ....|+++..||.|.+|.++.       .             ++...+. ....++.++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            55554443  445899999999999997632       0             0112222 34578899998  7778888


Q ss_pred             EEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 023018          208 TGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS---T---LALSGSKDGSVHMVNI  265 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~iwd~  265 (288)
                      +++....|.||-..... .......+ .+...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888877544321 11111111 156678899987732   2   6777888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.49  E-value=0.25  Score=37.63  Aligned_cols=106  Identities=14%  Similarity=0.281  Sum_probs=65.5

Q ss_pred             CEEEEecCCCeEEEEECCc--ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE---eCC--CCceeE-
Q 023018          162 HIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---A---TLRVW---NPK--SGENIH-  227 (288)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~-  227 (288)
                      ..|+.+...+.|.+|++.+  .+++.+|..- +.|..+.++..|++|++--.+   .   .+|+|   ...  ..+++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4554546668899999983  3556666644 789999999999999986432   2   56665   221  111211 


Q ss_pred             EEcCCC------------------ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          228 VIRGHP------------------YHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       228 ~~~~~~------------------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      .+.++.                  +...++.+++..| .|++|+ |+ ++.+.+|.+..+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEE
Confidence            111210                  0234677888888 566654 43 56899998876544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.47  E-value=0.27  Score=44.02  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCc------
Q 023018          110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADR------  180 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~------  180 (288)
                      ..-+.-+.-++..++-+....+.|||...+.....-. ...+.|..+.|..  +++.+++.+..+.|.+|--..      
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            3444444445444444455689999998886444322 3467899999964  788888888889999985421      


Q ss_pred             ---ccEEEEe--eccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          181 ---AAYLNMF--SGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       181 ---~~~~~~~--~~~~-~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                         ..+++.+  ..++ .+|....|.++|..++.+  +..+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence               1233333  2333 578999999988665544  457888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.46  E-value=0.00033  Score=58.73  Aligned_cols=137  Identities=15%  Similarity=0.229  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEEe
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      -....|-|.+.. ++.++.+..|..||-. ++...... ..+....++|..++..++ .+-..+.+.+|++.+......-
T Consensus        37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            344667785666 5666777788888854 44443443 345566789988887554 4456789999999765322211


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      .+....-.-+.|++....++.+...|.+.+++.++.+.+...-.|...+++++|.+.+..+
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            1222223337899988999999999999999998877666555588899999999865433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.46  E-value=0.34  Score=42.46  Aligned_cols=150  Identities=13%  Similarity=0.190  Sum_probs=80.2

Q ss_pred             EEEEE---eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC---e
Q 023018          121 LLASG---GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---V  194 (288)
Q Consensus       121 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i  194 (288)
                      +++..   ...+...++|. .|..+..+.........+...++|.+++...  ..++.+|+- |+.+..+......   -
T Consensus       117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H  192 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH  192 (477)
T ss_dssp             EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred             EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence            44444   24556667774 3555554443322222266678888776655  889999984 6666655533322   3


Q ss_pred             EEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCceeEEEcCCCc----cc--------------------c
Q 023018          195 TCGDFTPDGKTICTGSD-------------DATLRVWNPKSGENIHVIRGHPY----HT--------------------E  237 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~----~~--------------------~  237 (288)
                      ..+...|+|++|+.+..             .-.|..+| .+|+.+..+.....    ..                    .
T Consensus       193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~  271 (477)
T PF05935_consen  193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL  271 (477)
T ss_dssp             S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred             cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence            56778899999888772             12366667 67776655421110    00                    2


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          238 GLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       238 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      .++++.+.+ ++.+|+++-.-..|...|.+++++...+.
T Consensus       272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred             ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence            478999999 66666666666689999999999988873

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.46  E-value=0.00037  Score=62.47  Aligned_cols=165  Identities=12%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEee-----ccccCcEEEEEEec---CCCEEEEEeCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEI-----QGHKDSVSSLAFSM---DGQLLASGGLD  128 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~-----~~~~~~i~~~~~~~---~~~~l~~~~~d  128 (288)
                      .++|..+.|-.+.|-..+-..++  ..-|.+.||++.-  |+....+     ..-...+.-+.|.|   +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            45566777777777653322222  3337789999863  3322222     22234445666765   45577777788


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEE-----------EEcCCCCEEEEecCCCeEEEEECC-----cccEEEEeeccCC
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWV-----------SWHPRGHIVLAGSEDSTVWMWNAD-----RAAYLNMFSGHGS  192 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~  192 (288)
                      +.|++..+.+... ..++.|...+..+           ..+|+|..++.++.||.+++|.+.     ...++..++.|.+
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            9999877655432 2333454333332           368999999999999988888653     3345666666663


Q ss_pred             -CeEEEEEcCCC---------CEEEEEeC-CCeEEEEeCCCCcee
Q 023018          193 -SVTCGDFTPDG---------KTICTGSD-DATLRVWNPKSGENI  226 (288)
Q Consensus       193 -~i~~~~~~p~~---------~~l~~~~~-dg~i~i~d~~~~~~~  226 (288)
                       +-.|.-++.+.         .++++++. ...+++|.....+++
T Consensus       284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence             33333333221         23444443 456888887666554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.035  Score=51.72  Aligned_cols=141  Identities=11%  Similarity=0.070  Sum_probs=87.3

Q ss_pred             CCEEEEEEcCCCCcE--EEEEeCCCeEEEEEccCCeee-----Eeecc------ccCcEEEEEEecCCC-EEEEEeCCCe
Q 023018           65 DEVYSVACSPTDATL--VATGGGDDKGFFWRINQGDWA-----SEIQG------HKDSVSSLAFSMDGQ-LLASGGLDGL  130 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~--l~~~~~dg~i~iw~~~~~~~~-----~~~~~------~~~~i~~~~~~~~~~-~l~~~~~dg~  130 (288)
                      -+|..+...+ +...  +...+.+-.|..||+.+....     .-+..      ...-..++.|+|.-. ..+++..|+.
T Consensus       101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            3566666666 4333  233343447889998753211     11111      122345788888543 4567778999


Q ss_pred             EEEEeCCCCcee-EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCCE
Q 023018          131 VQIWDPSSGNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKT  205 (288)
Q Consensus       131 i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~~  205 (288)
                      |++.-+...... ..+. .....++++|+|.|+.+++|-..|++.-|-.. .+....+..    ....|.+++|.....+
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence            998876543322 2222 34468999999999999999999999988653 332333321    2467899999876666


Q ss_pred             EEE
Q 023018          206 ICT  208 (288)
Q Consensus       206 l~~  208 (288)
                      |++
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.36  E-value=0.38  Score=40.72  Aligned_cols=151  Identities=19%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeccCC--CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeEEE
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPG--GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCG  197 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~  197 (288)
                      .++++..+|.|.-.|..+++.+.......  ..+..-.+..+| .+++++.+|.++.+|.++++.+........ .+..-
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            45666788989999998888654333221  122222222255 488888889999999999998888775551 11111


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEe
Q 023018          198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~~~  274 (288)
                      ..- ....++.++.++.+.-.+..+|...............+..-....++ .++.+..  ++.+.-.+..+|+.....
T Consensus       149 ~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         149 PVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence            111 22344445578999999999898876654321000001100012233 4444444  667888888888877764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.36  Score=36.57  Aligned_cols=175  Identities=13%  Similarity=0.094  Sum_probs=101.0

Q ss_pred             CCcEEEEEeC--CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeEEeccCCCCE
Q 023018           76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV  152 (288)
Q Consensus        76 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  152 (288)
                      ++.++.+.+.  ...|++|++.+++.+..-.-....+..=-...-+.++ +-.-.+|.-.++|.++.+.+..+.-. +.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence            4455555543  3469999999888766543221111111111123333 33456889999999988887776532 334


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCe---EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018          153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSV---TCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (288)
Q Consensus       153 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i---~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (288)
                      +.++.  ++..|+.+....+++.-|.++.....++..  ...+|   .-+.|- +|...+-.-.+..|...+..+|+.+.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            55554  455577777777888888776544433321  22233   334443 55556655566667777777777655


Q ss_pred             EEcCC---------CccccCeEEEEEcCCC-CEEEEE
Q 023018          228 VIRGH---------PYHTEGLTCLTISADS-TLALSG  254 (288)
Q Consensus       228 ~~~~~---------~~~~~~v~~~~~~~~~-~~l~~~  254 (288)
                      .+...         ..+..-.+.+++.|++ +++++|
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44321         1134456788999976 555555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.20  E-value=1  Score=41.52  Aligned_cols=73  Identities=15%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----------Cee--eE-ee--------ccccCcEEEEEEecC---CC
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDW--AS-EI--------QGHKDSVSSLAFSMD---GQ  120 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~  120 (288)
                      -.|..+.++| .+.++|..|..|. .|-.+..          ++.  .. ++        ..+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4689999999 7778888777664 4444321          111  11 11        123457899999996   46


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 023018          121 LLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~  139 (288)
                      .|++-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8888899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=96.17  E-value=0.27  Score=43.17  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             CCcEEEEEeCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeEEe--ccC
Q 023018           76 DATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTL--EGP  148 (288)
Q Consensus        76 ~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~--~~~  148 (288)
                      ++.+.+.|+.+  ..+..|+..+.+....-.-...........-+++..+.|+.++   .+..||..+.+....-  ..+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            45666677653  3577788766554332111111111111223677777777543   4678888766543321  111


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPK  221 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~d-----g~i~i~d~~  221 (288)
                      ......+.+  ++++++.|   |.+.+||.++.+-  +..+.........+.+  +++..++|+.+     ..+..||..
T Consensus       398 r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        398 HYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             cccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence            111222222  56666666   4577888876532  2222211112222222  45666666643     245666665


Q ss_pred             CC
Q 023018          222 SG  223 (288)
Q Consensus       222 ~~  223 (288)
                      +.
T Consensus       471 ~~  472 (480)
T PHA02790        471 TY  472 (480)
T ss_pred             CC
Confidence            43

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.07  E-value=0.54  Score=37.23  Aligned_cols=198  Identities=16%  Similarity=0.176  Sum_probs=124.6

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..-..++-.| ++..-+++...|.|--.|..+++....--+....-..+..-|++...++-+.. .|.-.|.++.... +
T Consensus        62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~  138 (353)
T COG4257          62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-R  138 (353)
T ss_pred             CCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-E
Confidence            3456677777 77777888888888888888887665554555555778888988866654433 4444555554322 2


Q ss_pred             e----ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          145 L----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       145 ~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      |    ...........|.+.|++-+++.. |.---.|..+ ..+.++.. .....+.|+..|+|..-++.-.+..|-..|
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiarid  216 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARID  216 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcc
Confidence            2    223456788899999998888763 2222222211 12333332 233567788999999988887888888888


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ..++. ...+..........+.+--+|.|..-++-...+.++.||-.+.
T Consensus       217 p~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         217 PFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             cccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            88773 3344433322334455555667777777666677777776553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.05  E-value=0.00079  Score=56.54  Aligned_cols=141  Identities=16%  Similarity=0.311  Sum_probs=94.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccEEEEeec
Q 023018          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSG  189 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  189 (288)
                      ....|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+++||+.+......-.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            346678877778888889999999844 44443333 334566788888777544 455678999999976432111111


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC
Q 023018          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (288)
Q Consensus       190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (288)
                      ....-.-+.|++....++.+...|.+.||+..+....-....   |...+++++|.+.+..+ .++.|
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vi-l~dcd  179 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVI-LCDCD  179 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceee-ecCcH
Confidence            111112267999888999999999999999876655444333   67888999999876544 33334

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.6  Score=37.37  Aligned_cols=155  Identities=12%  Similarity=0.096  Sum_probs=97.0

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc---
Q 023018          107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---  181 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---  181 (288)
                      ..-+..+.++  +++...+..+.-++|.|+.+...-.....  ..+...++..  .|++..++..+.-..++|+.+.   
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            3445566665  45677777777799999987654333221  2233344444  5888888887777778887654   


Q ss_pred             cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                      .+..++......-..++.|  |++-+.+..|+-+.+.|+.+......+... .....+.++..+++--+++...  --+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy~--egvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVYD--EGVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEcc--cceE
Confidence            3344444444444666665  788888889999999999765443333221 1333678888887655555443  3466


Q ss_pred             EEEcCCCcE
Q 023018          262 MVNITTGKV  270 (288)
Q Consensus       262 iwd~~t~~~  270 (288)
                      +-|..+-+.
T Consensus       237 ivd~s~~ss  245 (370)
T COG5276         237 IVDVSGPSS  245 (370)
T ss_pred             EEecCCCCC
Confidence            667766553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.03  E-value=0.71  Score=41.96  Aligned_cols=152  Identities=9%  Similarity=0.077  Sum_probs=92.7

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE------ee----------------ccccCcEEEEEEec--C
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------EI----------------QGHKDSVSSLAFSM--D  118 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~----------------~~~~~~i~~~~~~~--~  118 (288)
                      -.+..+++.    ...+++++. .+.|+||++.......      .+                ......|+.|....  .
T Consensus        39 fKNNLtals----q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~  113 (717)
T PF08728_consen   39 FKNNLTALS----QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG  113 (717)
T ss_pred             cccceeEEe----cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence            334455554    144555655 4899999986532211      11                00123355555443  3


Q ss_pred             CCEEEEEeCCCeEEEEeCCC-------C-------------ceeEEeccCCCCEEEEEEc--CCCCEEEEecCCCeEEEE
Q 023018          119 GQLLASGGLDGLVQIWDPSS-------G-------------NLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMW  176 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~  176 (288)
                      ...|+.|..||.|.+|.+.+       .             ++...+. -...+++++++  ...++||+++....|.||
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            44788999999999996521       0             0112222 23468999999  788899999888888887


Q ss_pred             ECCcc--cE-EEEeeccCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEeC
Q 023018          177 NADRA--AY-LNMFSGHGSSVTCGDFTPDG---K---TICTGSDDATLRVWNP  220 (288)
Q Consensus       177 d~~~~--~~-~~~~~~~~~~i~~~~~~p~~---~---~l~~~~~dg~i~i~d~  220 (288)
                      -....  +. ...-..+...|-+|+|.++.   .   .|++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            55331  11 11111255568889998743   2   6788889999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=96.02  E-value=1.2  Score=40.98  Aligned_cols=198  Identities=15%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             CEEEEEEcCCCCcEEEEE-eCC----CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC------CeEEEE
Q 023018           66 EVYSVACSPTDATLVATG-GGD----DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIW  134 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~  134 (288)
                      .+..+.|+| ++++|+.+ ..+    ..|++.++.++..+........  ..++|.++++.|+.+..+      ..|+.+
T Consensus       128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            477788999 55555543 333    3588889887764322211111  458999999866655432      368888


Q ss_pred             eCCCC--ceeEEeccCCCCEE-EEEEcCCCCEEEEecC---CCeEEEEECC--cccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          135 DPSSG--NLKCTLEGPGGGVE-WVSWHPRGHIVLAGSE---DSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       135 d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      ++.++  +-...+........ .+..+.++++++..+.   ++.+.+|+..  .+.....+.........+. +. +..|
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l  282 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRF  282 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEE
Confidence            88887  33444544333343 2333437776655443   3578888842  3332222222222222222 22 3444


Q ss_pred             EEEeCC----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE--EEcCCCcE
Q 023018          207 CTGSDD----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTGKV  270 (288)
Q Consensus       207 ~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~t~~~  270 (288)
                      +..+..    ..|...++........+.... ....+..+.+.. ..++++...+|.-++  +++.+++.
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~  350 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREV  350 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCce
Confidence            433322    234444554212223333221 123577777773 355556666765444  45444433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.95  E-value=0.4  Score=40.89  Aligned_cols=96  Identities=14%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe----cC-------
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MD-------  118 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~-------  118 (288)
                      ...+-.....|......+.+++.+| .+.+.|+...=|.|.++|+.++..++..++-.+.-  +.|.    +.       
T Consensus       293 ~~~~l~~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~  369 (415)
T PF14655_consen  293 PAAPLPMRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNS  369 (415)
T ss_pred             CCcccceEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccc
Confidence            4445566777888888899999999 68888888888999999999988777666543321  1111    00       


Q ss_pred             ---------CCE-EEEEeCCCeEEEEeCCCCceeEEeccC
Q 023018          119 ---------GQL-LASGGLDGLVQIWDPSSGNLKCTLEGP  148 (288)
Q Consensus       119 ---------~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~  148 (288)
                               ..+ ++-+-.-|.|-||.++++..+..+...
T Consensus       370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence                     112 334457899999999988877766543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.89  E-value=0.061  Score=29.32  Aligned_cols=31  Identities=16%  Similarity=0.467  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q 023018          192 SSVTCGDFTPDG---KTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       192 ~~i~~~~~~p~~---~~l~~~~~dg~i~i~d~~~  222 (288)
                      +.+++++|+|..   ++|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999843   5888888899999999995

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.68  Score=41.77  Aligned_cols=179  Identities=13%  Similarity=0.184  Sum_probs=94.0

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE---eccCCCCEEEEEEcCCCCE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSWHPRGHI  163 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~  163 (288)
                      -.|+|+++. |+.+..+......+-.+.|+.+. .|++...+|++++|++-.......   +......|..+.+..+|  
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence            457888865 55555554444577889998765 466668899999999754322210   12233345555555455  


Q ss_pred             EEEecCCCeEEEE-ECCcccEEEEeec---cCCCeEEEEEcCCCC--E-EEEEe-CCCeEEEEeCCCCc-eeEEEcCCCc
Q 023018          164 VLAGSEDSTVWMW-NADRAAYLNMFSG---HGSSVTCGDFTPDGK--T-ICTGS-DDATLRVWNPKSGE-NIHVIRGHPY  234 (288)
Q Consensus       164 l~~~~~dg~i~i~-d~~~~~~~~~~~~---~~~~i~~~~~~p~~~--~-l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~~  234 (288)
                      +++-..+|++.+- +.... .+.++..   ...+-.|-...+++.  . ++-.. ..+ ..++-...+. ....+..   
T Consensus       140 Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~---  214 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW---  214 (829)
T ss_pred             eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC---
Confidence            3333334555443 33221 2222221   111112222222211  1 11111 011 1112111111 1111111   


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ....+..+..||+.++|+.-...|.|.+-+....++++.+
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~  254 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF  254 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence            2356888999999999999999999999999888777765

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.42  Score=45.68  Aligned_cols=30  Identities=27%  Similarity=0.335  Sum_probs=26.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          245 SADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       245 ~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+++..++++..||.+.+||+..++.....
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~  272 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKLQIAR  272 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCceeecC
Confidence            778999999999999999999999874443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.5  Score=35.81  Aligned_cols=153  Identities=18%  Similarity=0.169  Sum_probs=90.7

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCe
Q 023018          118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV  194 (288)
Q Consensus       118 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  194 (288)
                      ++.++.+.+.  ...|++||+.+++.+..-.-....+..=-...-+. +.+..-.+|....+|..+-+.+..+.. .+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            4555666553  35799999999987765443211111111111122 333344678889999988887777653 3333


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      +.++  .++..|+.++....++.-|.++.....++....  ..-..++-+.|- +|.+.+-.=....|...+..+|+++.
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            4544  356678888778888888887654443332210  012223444444 56666655556678888888888887


Q ss_pred             Ee
Q 023018          273 LN  274 (288)
Q Consensus       273 ~~  274 (288)
                      .+
T Consensus       211 wi  212 (262)
T COG3823         211 WI  212 (262)
T ss_pred             EE
Confidence            65

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.60  E-value=0.097  Score=28.54  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCC--cEEEEEeCCCeEEEEEccC
Q 023018           65 DEVYSVACSPTDA--TLVATGGGDDKGFFWRINQ   96 (288)
Q Consensus        65 ~~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~   96 (288)
                      ++|.++.|+|...  .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4789999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.48  E-value=0.16  Score=39.46  Aligned_cols=70  Identities=16%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEE------cCC-----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVI------RGH-----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +...+.+|++.+.+|.+++||+.+++.+..-      -..     ......|..+.++.+|.-|++-+ +|..+.|+..=
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3446889999999999999999987654321      000     02456788899998888777664 57889998765


Q ss_pred             Cc
Q 023018          268 GK  269 (288)
Q Consensus       268 ~~  269 (288)
                      +.
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.47  E-value=0.77  Score=36.12  Aligned_cols=141  Identities=13%  Similarity=0.261  Sum_probs=81.1

Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC---CeEEEEECCc----ccEE---EEeeccCCCeEEEEEc
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADR----AAYL---NMFSGHGSSVTCGDFT  200 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~----~~~~---~~~~~~~~~i~~~~~~  200 (288)
                      -.+||+.+++....-.....-+.+-.+.++|+++.+|+..   ..+++++...    ....   ..+. ....--.....
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence            4578988876544322233345555678899999998752   3578887644    0111   1111 22233345566


Q ss_pred             CCCCEEEEEeCCCe-EEEEeCCC-CceeEEE---cCC--CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          201 PDGKTICTGSDDAT-LRVWNPKS-GENIHVI---RGH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       201 p~~~~l~~~~~dg~-i~i~d~~~-~~~~~~~---~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      |+|+.|+.|+...- ..+|..+. ......+   ...  .....--..+...|+|++++.+..+  -.|||..+++.++.
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence            79999999887653 44555422 1111111   110  0011223356678999999888765  46679999888776


Q ss_pred             e
Q 023018          274 N  274 (288)
Q Consensus       274 ~  274 (288)
                      +
T Consensus       205 l  205 (243)
T PF07250_consen  205 L  205 (243)
T ss_pred             C
Confidence            6

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.36  E-value=1.5  Score=37.35  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEE-EEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-----
Q 023018           67 VYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----  140 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  140 (288)
                      ...+..++ ++.+++.+.. |.+. -|+--.......-......++.+.|.+++..++++ ..|.+.. ....++     
T Consensus       241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence            44455566 5666665554 4433 23322111122222335678899999998877665 5565543 334443     


Q ss_pred             eeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          141 LKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       141 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      .......  ....+..+.|.+++..+++| ..|.+.... ..++.=...   ..-...++.+.|.++++.+++ +.+|.|
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~i  393 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVL  393 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEE
Confidence            2222222  22358889999877666665 447666653 333322221   223456889998876655555 457777


Q ss_pred             EEE
Q 023018          216 RVW  218 (288)
Q Consensus       216 ~i~  218 (288)
                      .-|
T Consensus       394 l~~  396 (398)
T PLN00033        394 LRY  396 (398)
T ss_pred             EEe
Confidence            655

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.32  E-value=1.4  Score=36.60  Aligned_cols=146  Identities=17%  Similarity=0.283  Sum_probs=84.9

Q ss_pred             cCcEEEEEEecCCCEEEEEeCCCe------EEEEeCCC--C--cee-----EEeccCCC--------CEEEEEEcCCCCE
Q 023018          107 KDSVSSLAFSMDGQLLASGGLDGL------VQIWDPSS--G--NLK-----CTLEGPGG--------GVEWVSWHPRGHI  163 (288)
Q Consensus       107 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~i~~~~~~~~~~~  163 (288)
                      -+.+..+.+.+++..+++.+.+|.      +..+.+..  +  ..+     ..+....+        -.-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356778888865555666666666      55555443  1  111     11122222        2346788778877


Q ss_pred             EEEecCC------CeEEEEECCcccEEEEee---------------ccCCCeEEEEEcCCCCEEEEEeCCC---------
Q 023018          164 VLAGSED------STVWMWNADRAAYLNMFS---------------GHGSSVTCGDFTPDGKTICTGSDDA---------  213 (288)
Q Consensus       164 l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~p~~~~l~~~~~dg---------  213 (288)
                      +++.=.+      ..|+.++.. ++.+..+.               ..+...-+|+++|+|+.|+++....         
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777667      788888875 55443331               1345678999999999777664322         


Q ss_pred             -------eEEEEeCCC-CceeE--EEcCCC----ccccCeEEEEEcCCCCEEEE
Q 023018          214 -------TLRVWNPKS-GENIH--VIRGHP----YHTEGLTCLTISADSTLALS  253 (288)
Q Consensus       214 -------~i~i~d~~~-~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~l~~  253 (288)
                             .|..||..+ +....  .+....    .....+..+.+-+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   234455554 32222  222111    03467888999999887764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.27  E-value=1.6  Score=37.98  Aligned_cols=74  Identities=18%  Similarity=0.321  Sum_probs=42.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCC---------CCceeEEe-----------ccCCCCEEEEEEcCCC---CEEE
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS---------SGNLKCTL-----------EGPGGGVEWVSWHPRG---HIVL  165 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~-----------~~~~~~i~~~~~~~~~---~~l~  165 (288)
                      .|..+..++.|..++-++.+|.+.++=.+         .|+.....           ....-.+...+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46677788899988888888876655321         22211110           0111234556677743   4566


Q ss_pred             EecCCCeEEEEECCccc
Q 023018          166 AGSEDSTVWMWNADRAA  182 (288)
Q Consensus       166 ~~~~dg~i~i~d~~~~~  182 (288)
                      .-+.|..|++|++...+
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            66666777777765443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.22  E-value=2  Score=37.80  Aligned_cols=143  Identities=17%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC---EEEEEEcCCC
Q 023018           85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRG  161 (288)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~  161 (288)
                      ..+...+.|.. |.....+.........+...++|.+++...  ..+..+|+. |+.+..+......   -..+...|+|
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence            34455555643 344433332222211166778888776554  788888875 5555554433321   3457778899


Q ss_pred             CEEEEecC-------------CCeEEEEECCcccEEEEeec--c-------------------------CCCeEEEEEcC
Q 023018          162 HIVLAGSE-------------DSTVWMWNADRAAYLNMFSG--H-------------------------GSSVTCGDFTP  201 (288)
Q Consensus       162 ~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~-------------------------~~~i~~~~~~p  201 (288)
                      ++|+.+..             .-.|..+| .+|+.+..+..  |                         -..+.++.+.+
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~  280 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP  280 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred             CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence            98887771             12355555 56655544321  0                         02478899999


Q ss_pred             CCCEEEEEeC-CCeEEEEeCCCCceeEEEcCC
Q 023018          202 DGKTICTGSD-DATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       202 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~  232 (288)
                      ....|+.++. -..|...|.++++....+..+
T Consensus       281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            4455555554 458889998888887777543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.12  E-value=0.74  Score=32.27  Aligned_cols=112  Identities=9%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCcc--------cEEEEeeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEeC
Q 023018          154 WVSWHPRGHIVLAGSEDSTVWMWNADRA--------AYLNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       154 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~p-----~~~~l~~~~~dg~i~i~d~  220 (288)
                      .-.|......|++++..|.|.|++....        ..+..+. ....|++|+-.|     ....|+.|+ ...|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            3456666678899999999999987533        2333333 456677775544     345677776 456889999


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcC----CCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .....+..-.    -...++++.+-.    ...++++ +.+..|.-||....+...
T Consensus        81 ~~N~d~Fyke----~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   81 ENNSDLFYKE----VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             ccCchhhhhh----CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEE
Confidence            8665443222    345677776643    2344444 446667777765544443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.10  E-value=2  Score=41.42  Aligned_cols=152  Identities=14%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe--------cCCCEEEEEeCCCeEEEEeCC--
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS--------MDGQLLASGGLDGLVQIWDPS--  137 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~--  137 (288)
                      +.+-+-|.=++.-+  +-|..+.+|++.++.....+.+-...|..+..-        |.=+++++.+.--.|.++-+.  
T Consensus        82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            33444452233333  456899999999977777777766677666543        222344444444456655332  


Q ss_pred             --CCce-----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEE--ECCcc---c-E----------------EEEee
Q 023018          138 --SGNL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW--NADRA---A-Y----------------LNMFS  188 (288)
Q Consensus       138 --~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~----------------~~~~~  188 (288)
                        ++..     ...+......|.++....+|+.+++|-. |.|+-+  ....+   + +                +..+.
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~  238 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP  238 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence              1111     1222334556888997778877777655 544322  22111   1 0                11222


Q ss_pred             -ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          189 -GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       189 -~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                       .+..+|..+........+++-+..|.|.+||+..
T Consensus       239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             4567999999998888999999999999999975

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.04  E-value=0.78  Score=32.15  Aligned_cols=115  Identities=11%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCc--------eeEEeccCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEEC
Q 023018          112 SLAFSMDGQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNA  178 (288)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~  178 (288)
                      .-.|......|++++..|+|.|++.....        .+..+. -...|++++-.+     ....|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34566666678888889999999876432        233333 334577775544     2346777665 78999999


Q ss_pred             CcccEEEEeeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018          179 DRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGENIHVI  229 (288)
Q Consensus       179 ~~~~~~~~~~~~~~~i~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (288)
                      ....-+..- .-...+.++.+-.   ...-|+..+.+..|.-||....+...++
T Consensus        81 ~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            877544322 2335677776643   1223454555778888887655555444

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.02  E-value=2  Score=36.81  Aligned_cols=151  Identities=11%  Similarity=0.046  Sum_probs=0.0

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeeccccCcEEEEEEec----CCCEEEEEeCCCeEEEEeC-
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAFSM----DGQLLASGGLDGLVQIWDP-  136 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~-  136 (288)
                      |-.+.-++.+...+++|+..|.++||+.....     .+...+ -..+|..+..-+    .....++.-.-..+.||.+ 
T Consensus        27 v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   27 VGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             EEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE


Q ss_pred             --------CCCceeEEeccCCCCEEEEEE-------cCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          137 --------SSGNLKCTLEGPGGGVEWVSW-------HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       137 --------~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                              .+.-.+..+..|.-.-.+..+       .....+|.+-+.||.+.+|+-+.......+.. ---...+.|.|
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~  184 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCP  184 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEee


Q ss_pred             CCCEEEEEeCCCeEEEEe
Q 023018          202 DGKTICTGSDDATLRVWN  219 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d  219 (288)
                      .-+.|++++.+..|.-|.
T Consensus       185 ~tDsfvt~sss~~l~~Yk  202 (418)
T PF14727_consen  185 RTDSFVTASSSWTLECYK  202 (418)
T ss_pred             cCCEEEEecCceeEEEec

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=1.4  Score=37.67  Aligned_cols=120  Identities=9%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE----EEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL----NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       148 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ..++|.++.|+++.+.+|+--.+..|.+++....+..    .+.+.....|....|+.. .-++..+..| +-+|-....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            5568999999999999999999999999987433222    223334456889999876 4455555444 555543321


Q ss_pred             -ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEE
Q 023018          224 -ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK--DGSVHMVNITTGKVCC  272 (288)
Q Consensus       224 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~t~~~~~  272 (288)
                       ..++....   +...|....|.++-+.++.++.  .+.+.=+-++++...+
T Consensus       143 krslRlVks---~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~k  191 (657)
T KOG2377|consen  143 KRSLRLVKS---HNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMSK  191 (657)
T ss_pred             hhhhhhhhh---cccCccEEEEccccceEeeeccccccccccEEEeeceeee
Confidence             22333333   6778888999997765544432  3444445555544333

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.84  E-value=1.9  Score=35.65  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEeCCCCcee---EEecc---CCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECCcc
Q 023018          118 DGQLLASGGLD-----GLVQIWDPSSGNLK---CTLEG---PGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADRA  181 (288)
Q Consensus       118 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~---~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~  181 (288)
                      ++.+++.|+.+     ..+..||+.+.+..   ..+..   ..... +++.. ++++++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45566677654     35667777665531   22211   11111 22222 4667777764     246888898765


Q ss_pred             cE--EEEeeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCc
Q 023018          182 AY--LNMFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGE  224 (288)
Q Consensus       182 ~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~  224 (288)
                      +-  +..+... ......+...++++.+.|+.++    .+.+||+.+.+
T Consensus       150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            32  2222111 1111122223566667777654    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=2.9  Score=37.99  Aligned_cols=161  Identities=13%  Similarity=0.122  Sum_probs=83.4

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--e--ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--I--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      ..++-.+.|+. +. -|++-..+|++++|++.... +..  .  ......|..+.+..+|  +++-..+|.+.+-+-...
T Consensus        83 ~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~  157 (829)
T KOG2280|consen   83 HGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEE  157 (829)
T ss_pred             CCCeeeecccC-Cc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCc
Confidence            34788899996 44 44566889999999986422 222  1  2233345555555555  333344565655432222


Q ss_pred             ceeEEecc-CCCCEEEEEEc--CCC---CEEEEec-CCC-eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          140 NLKCTLEG-PGGGVEWVSWH--PRG---HIVLAGS-EDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       140 ~~~~~~~~-~~~~i~~~~~~--~~~---~~l~~~~-~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ..+..++. +.......+|.  +++   ..++-.. ..+ .+..-+.... ....+....+.+..+..||+.++|+.-..
T Consensus       158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~~~~~~ki~VS~n~~~laLyt~  236 (829)
T KOG2280|consen  158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWPNSSVVKISVSPNRRFLALYTE  236 (829)
T ss_pred             chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCCCceEEEEEEcCCcceEEEEec
Confidence            22333332 22222222332  111   1111111 001 1111111111 12223323466888999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEc
Q 023018          212 DATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~  230 (288)
                      .|.|.+-+....+....+.
T Consensus       237 ~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCcEEEEecchhhhhhccC
Confidence            9999998877666555544

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=94.79  E-value=1.6  Score=34.51  Aligned_cols=70  Identities=10%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             CCCeEEEEEcC----C---CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCe---EEEEEcCCCCEEEEEeCCCcE
Q 023018          191 GSSVTCGDFTP----D---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL---TCLTISADSTLALSGSKDGSV  260 (288)
Q Consensus       191 ~~~i~~~~~~p----~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~dg~i  260 (288)
                      ...|+||+--.    +   -..|+.|+.+|.|+|.|......+..+...   .-++   ..-.|..-.-.|++++.||.|
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp---svPv~i~~~G~~devdyRI~Va~Rdg~i  252 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP---SVPVFISVSGQYDEVDYRIVVACRDGKI  252 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC---CCceEEEEEeeeeccceEEEEEeCCCEE
Confidence            34577776543    1   246999999999999999877776666542   2222   112233112356777899988


Q ss_pred             EEE
Q 023018          261 HMV  263 (288)
Q Consensus       261 ~iw  263 (288)
                      ++.
T Consensus       253 y~i  255 (257)
T PF14779_consen  253 YTI  255 (257)
T ss_pred             EEE
Confidence            864

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.75  E-value=0.36  Score=37.45  Aligned_cols=66  Identities=20%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             EcCCCCEEEEecCCCeEEEEECCcccEEEEe-------e-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-------S-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       157 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      +...+.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3446888999999999999999987654322       1       2456788888998888777655 57889998764


Q ss_pred             C
Q 023018          223 G  223 (288)
Q Consensus       223 ~  223 (288)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.71  E-value=3.9  Score=38.68  Aligned_cols=133  Identities=16%  Similarity=0.178  Sum_probs=76.6

Q ss_pred             CCeEEEEeCC-CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--cCCCeEEEEEcCCCC
Q 023018          128 DGLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGK  204 (288)
Q Consensus       128 dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~  204 (288)
                      +|.++.|++- .++.+..+....-+-.-.+..|...++++|-. ..+++|++...++++....  ....|+.+.+.  +.
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~  987 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA  987 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence            4667777653 33333323221112222455665556665544 7899999988776655432  24556776664  67


Q ss_pred             EEEEEeCCCeEE--EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          205 TICTGSDDATLR--VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       205 ~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ++++|...-.+.  .|+.. .+.+..+...+ ....|+++.+- |...++.+..=|.+.+..+.
T Consensus       988 RI~VgD~qeSV~~~~y~~~-~n~l~~fadD~-~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  988 RIVVGDIQESVHFVRYRRE-DNQLIVFADDP-VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEEeeccceEEEEEEecC-CCeEEEEeCCC-ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            788887655554  45543 44455555433 34456666554 44456777777888777664

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.69  E-value=0.41  Score=42.86  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCC----CceeEEEcCC-------------------CccccCeEEEEEcC----CCCEEEE
Q 023018          201 PDGKTICTGSDDATLRVWNPKS----GENIHVIRGH-------------------PYHTEGLTCLTISA----DSTLALS  253 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~-------------------~~~~~~v~~~~~~~----~~~~l~~  253 (288)
                      ++...++.+..||.+.......    +.........                   .........+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777888888887776553    2222111100                   00123455566666    6789999


Q ss_pred             EeCCCcEEEEEcCCCcEEEEe
Q 023018          254 GSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       254 ~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.|+.+|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997764

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.69  E-value=1.9  Score=35.01  Aligned_cols=168  Identities=14%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             eEEEEEccCCeeeEeecc------ccCcEEEEEEecCC-----CEEEEE-eCCCeEEEEeCCCCceeEEeccC-------
Q 023018           88 KGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-----QLLASG-GLDGLVQIWDPSSGNLKCTLEGP-------  148 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-------  148 (288)
                      +|.+||+.+.+.++++.-      ..+.+..+.+....     .++..+ +..+-|.|+|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            799999999998887653      24467788887632     233333 34568999999998765544321       


Q ss_pred             ------------CCCEEEEEEcC---CCCEEEEecCCC-eEEEEEC---Cccc---------EEEEeeccCCCeEEEEEc
Q 023018          149 ------------GGGVEWVSWHP---RGHIVLAGSEDS-TVWMWNA---DRAA---------YLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       149 ------------~~~i~~~~~~~---~~~~l~~~~~dg-~i~i~d~---~~~~---------~~~~~~~~~~~i~~~~~~  200 (288)
                                  ...+..++.+|   +++.|+.+...+ .++-..+   ++..         .+..+-........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        12366677765   556666655433 2332221   1111         112221112356678889


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCccccCeEEEEEcC--CCCEEEEEe
Q 023018          201 PDGKTICTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISA--DSTLALSGS  255 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~  255 (288)
                      ++|..+++--..+.|..|+..+.   +....+...+..-..+..+.+.+  +|.+.+...
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            98888888888999999998752   12233332221245678899988  776655543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.67  E-value=0.11  Score=47.52  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             EeecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEE-----------EecCCCEEEEE
Q 023018           59 IFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA-----------FSMDGQLLASG  125 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~~~  125 (288)
                      ....-...+.-+.|.|.  +..++..+-.++.+++..+.+... ..+.+|...+..++           ++|||..|+.+
T Consensus       175 ~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a  253 (1283)
T KOG1916|consen  175 PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA  253 (1283)
T ss_pred             ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence            33334445566666662  456777777788888887765332 33444655544443           58899999999


Q ss_pred             eCCCeEEEEeCC-----CCceeEEeccCCC-CEEEEEEcCCC---------CEEEEecC-CCeEEEEECCcccEE
Q 023018          126 GLDGLVQIWDPS-----SGNLKCTLEGPGG-GVEWVSWHPRG---------HIVLAGSE-DSTVWMWNADRAAYL  184 (288)
Q Consensus       126 ~~dg~i~i~d~~-----~~~~~~~~~~~~~-~i~~~~~~~~~---------~~l~~~~~-dg~i~i~d~~~~~~~  184 (288)
                      +.||.++.|.+.     ..++++..+.|.+ +-.|.-++.+.         .++++++. +..+++|.....+++
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999998888653     2244555565653 22222233221         23445444 456899987766665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.71  Score=39.29  Aligned_cols=112  Identities=13%  Similarity=0.158  Sum_probs=75.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe----eccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----IQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ..++..-....++|.++.|++ +.+.+|+-..+.+|.+.+....+....    .+.....|....|+.+ .-+|..+..|
T Consensus        56 DVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G  133 (657)
T KOG2377|consen   56 DVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG  133 (657)
T ss_pred             CCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence            344444445567999999999 888999999999999999854332222    2223456888999866 4455555555


Q ss_pred             eEEEEeCCC-CceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018          130 LVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus       130 ~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  168 (288)
                       +-+|-... .+.++..+.+...|....|.++.+.++.++
T Consensus       134 -~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  134 -IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             -eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence             55555433 234455566777899999999877555444

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.17  E-value=2.5  Score=34.16  Aligned_cols=114  Identities=18%  Similarity=0.328  Sum_probs=70.9

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe------CCCeEEEEeCCCCceeEEecc-----CCCCEEEE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG-----PGGGVEWV  155 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~  155 (288)
                      ..|++||..+.+....-.+-.+.|+++.|..+.++++.|.      ....+..||+.+.... .+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence            4599999998887776666778999999986666666663      3457888998776532 2222     23678888


Q ss_pred             EEcC-CC-CEEEEec-C--CCeEEEEECCcccEEEE-eeccCCCeEEEEEcC
Q 023018          156 SWHP-RG-HIVLAGS-E--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTP  201 (288)
Q Consensus       156 ~~~~-~~-~~l~~~~-~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p  201 (288)
                      .+.. ++ ++.++|. .  +..|..||-.+...+.. .......|..+.+-|
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            7744 33 3444443 2  34577787655544443 222234455554433

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.17  E-value=5  Score=37.60  Aligned_cols=71  Identities=7%  Similarity=0.005  Sum_probs=50.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE----cCC-----------C-ccccCeEEEEEcCCCCEEEEE
Q 023018          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGH-----------P-YHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       191 ~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~-----------~-~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ...|.++....-+.+++....||+|.++|..+.+.+...    ...           . ....++..++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            355777777777788999999999999998876544333    000           0 011234468899999999988


Q ss_pred             eCCCcEE
Q 023018          255 SKDGSVH  261 (288)
Q Consensus       255 ~~dg~i~  261 (288)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8898865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=1.3  Score=38.46  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=52.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CCcee---EEEcCC-----CccccCeEEEEEcCCC---CEEE
Q 023018          193 SVTCGDFTPDGKTICTGSDDATLRVWNPK---------SGENI---HVIRGH-----PYHTEGLTCLTISADS---TLAL  252 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~dg~i~i~d~~---------~~~~~---~~~~~~-----~~~~~~v~~~~~~~~~---~~l~  252 (288)
                      .|..+..++.|..++..+.+|.+.++=.+         .|+..   +++...     ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999999989976554321         22221   111100     0012235678999965   5677


Q ss_pred             EEeCCCcEEEEEcCCCcEEEE
Q 023018          253 SGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      .-+.|..|++|++...+.+..
T Consensus       185 iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             EEecCcEEEEEecCCcchhhc
Confidence            778899999999987665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.05  E-value=2.3  Score=35.45  Aligned_cols=104  Identities=12%  Similarity=0.215  Sum_probs=56.0

Q ss_pred             CEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---EEEe----eccCCCeEEEEEcCC---CCEEEEEeCC--------
Q 023018          151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---LNMF----SGHGSSVTCGDFTPD---GKTICTGSDD--------  212 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~i~~~~~~p~---~~~l~~~~~d--------  212 (288)
                      ..+.|+|.|+++++++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|++....        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3678999999877665 4589999999 34332   2222    123457899999994   3444443331        


Q ss_pred             -CeEEEEeCCCC--c------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018          213 -ATLRVWNPKSG--E------NIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       213 -g~i~i~d~~~~--~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                       ..|.-|....+  .      .+..+.........-..|.|.|+|.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             13433433322  1      11122221112344567999999977776554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.96  E-value=3.8  Score=35.43  Aligned_cols=31  Identities=13%  Similarity=0.297  Sum_probs=25.0

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          237 EGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ..|..++..+..+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4488999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.90  E-value=0.63  Score=34.61  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCeEEEEeCCC
Q 023018          192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       192 ~~i~~~~~~p~~------~~l~~~~~dg~i~i~d~~~  222 (288)
                      ..+..++|||.|      ..|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999943      4688899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.75  E-value=3.4  Score=34.20  Aligned_cols=106  Identities=12%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCeee---EeeccccCcE--EEEEEecCCCEEEEEeC-----CCeEEEEeCCCCc
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGDWA---SEIQGHKDSV--SSLAFSMDGQLLASGGL-----DGLVQIWDPSSGN  140 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~  140 (288)
                      +..+++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++. -+++..+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            44566677654     34667777665531   2222111111  12222 24566666653     2468888988765


Q ss_pred             eeEEeccC-CCCEEEEEEcCCCCEEEEecCCC----eEEEEECCccc
Q 023018          141 LKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAA  182 (288)
Q Consensus       141 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  182 (288)
                      ....-..+ .......+...++++++.|+.++    .+.+||+++.+
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            43321111 11112222233577888887654    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=93.69  E-value=3.6  Score=34.34  Aligned_cols=104  Identities=14%  Similarity=0.277  Sum_probs=52.1

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCeeeEe--ecc---ccCc-EEEEEEecCCCEEEEEeCC-----------CeEEE
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI  133 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~--~~~---~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i  133 (288)
                      ++.+++.|+.+     ..+.+||+.+.+....  +..   .... -.+++. -+++.++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            45666777653     2477888877654432  110   0111 122222 345666666643           24778


Q ss_pred             EeCCCCceeEEec-----cCCCCEEEEEEcCCCCEEEEecCC-------------CeEEEEECCccc
Q 023018          134 WDPSSGNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSED-------------STVWMWNADRAA  182 (288)
Q Consensus       134 ~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~  182 (288)
                      ||+.+.+-...-.     ..........+  ++++++.++.+             ..+.+||+.+.+
T Consensus       164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        164 YNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             EECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence            8887765332111     11111222222  55666655432             458889987654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.63  E-value=0.41  Score=25.73  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          246 ADSTLALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       246 ~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                      |+++.|+++. .++.|.++|..+++.+..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            5677666654 5789999999999888876

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=3.3  Score=33.38  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=90.5

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--  140 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  140 (288)
                      +-+..+.++.   .++..+..+.-++|.|+.+...-..+..  ..+-..  .|.-.|++..++..+.-+.+.|+.+..  
T Consensus        87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence            4455666654   4666667777799999987543322221  122333  344568888888855556677876653  


Q ss_pred             -eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          141 -LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       141 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                       +..++.........++.+  |++-..+..|+-+.+.|+....   .+.... ....+.++..+++..+++..  +--+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceE
Confidence             333444444444566664  7788888899999999997653   233332 33367887777665555443  33466


Q ss_pred             EEeCCCCc
Q 023018          217 VWNPKSGE  224 (288)
Q Consensus       217 i~d~~~~~  224 (288)
                      +-|..+.+
T Consensus       237 ivd~s~~s  244 (370)
T COG5276         237 IVDVSGPS  244 (370)
T ss_pred             EEecCCCC
Confidence            66665444

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.53  E-value=4.2  Score=34.55  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=26.1

Q ss_pred             CCcEEEEEeCCC-----------eEEEEEccCCeeeEeeccccCcE--EEEEEecCCCEEEEEeCC
Q 023018           76 DATLVATGGGDD-----------KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        76 ~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d  128 (288)
                      ++.+.+.|+...           .+..||..+.+....-.......  .+....-++++.+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            456666666532           47778877765444321111111  111221366677777653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.47  E-value=0.63  Score=24.97  Aligned_cols=31  Identities=23%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCCCceeEEEcC
Q 023018          201 PDGKTICTGS-DDATLRVWNPKSGENIHVIRG  231 (288)
Q Consensus       201 p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  231 (288)
                      |++++|+++. .++.|.++|..++..+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677777655 578999999988887777764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.43  E-value=2.7  Score=32.16  Aligned_cols=101  Identities=11%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             EEEEEeCCCeEEEEEcc--CCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---C---eEEEE---eCC--CCceeE-E
Q 023018           79 LVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---G---LVQIW---DPS--SGNLKC-T  144 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~--~~~~~~-~  144 (288)
                      .|+.+...+.|.+|++.  ..+...++. .-+.|..+.++..|+||++--.+   .   .+++|   +..  ..+.+. +
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            33333555889999988  355666676 45789999999999999997432   2   55665   221  111111 1


Q ss_pred             ecc---------------------CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc
Q 023018          145 LEG---------------------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA  181 (288)
Q Consensus       145 ~~~---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  181 (288)
                      +-+                     ...++.+++-.|...-|++|+. +.+.+|.++..
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            111                     1235667777774444555554 67888877544

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.33  E-value=2.8  Score=38.42  Aligned_cols=94  Identities=14%  Similarity=0.275  Sum_probs=51.6

Q ss_pred             CCCEEEEEEcCCCCEEEEecCCC-----eEEEEECCcccEEEEe---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      .+.-..++|-|+|..+++-..||     .|.++. ++|-.-..+   .+....+..++|+-....++.+ ..+.|.+|-.
T Consensus       246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwtt  323 (1243)
T COG5290         246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTT  323 (1243)
T ss_pred             ccchhccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEc
Confidence            34445689999999999977554     355554 222111111   1223345566776554444443 3567999976


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCC
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                      .+..-......   ....+.-+.|+|.
T Consensus       324 kNyhWYLK~e~---~ip~~s~vkwhpe  347 (1243)
T COG5290         324 KNYHWYLKVER---QIPGISYVKWHPE  347 (1243)
T ss_pred             cceEEEEEEee---cCCCcceeeeccc
Confidence            65432222211   2344566788883

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=1.7  Score=41.91  Aligned_cols=154  Identities=18%  Similarity=0.296  Sum_probs=90.4

Q ss_pred             EEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEE--------cCCCCEEEEecCCCeEEEEECCc-
Q 023018          111 SSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--------HPRGHIVLAGSEDSTVWMWNADR-  180 (288)
Q Consensus       111 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~-  180 (288)
                      ..+-+-|. ++..++  -|..+.+|+..++.....+.+-...|..+..        -|.=+++++-+.--.|.++-+.- 
T Consensus        82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            34444443 333333  4788999999997777766665555555543        22223344433445566664421 


Q ss_pred             ---cc---E--EEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE--EEeCCCC---c--------------eeEEEcCCC
Q 023018          181 ---AA---Y--LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR--VWNPKSG---E--------------NIHVIRGHP  233 (288)
Q Consensus       181 ---~~---~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~--i~d~~~~---~--------------~~~~~~~~~  233 (288)
                         +.   .  ..++......|+++....+|+.+++|- ||.|+  +|....+   +              .+..+...+
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~  238 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP  238 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence               11   0  122223456788999888888777665 55443  2222211   0              011111111


Q ss_pred             -ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          234 -YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       234 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                       .+..+|..+.....-.+|.+-+..|.|.+|++..
T Consensus       239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             3567899999998888999999999999999986

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.98  E-value=4.8  Score=33.66  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             CCcEEEEEeCC-----------CeEEEEEccCCeeeEeeccccCcEEE--EEEecCCCEEEEEeCC
Q 023018           76 DATLVATGGGD-----------DKGFFWRINQGDWASEIQGHKDSVSS--LAFSMDGQLLASGGLD  128 (288)
Q Consensus        76 ~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d  128 (288)
                      ++.+.+.|+..           ..+..||..+.+..............  ....-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            55677777653           24777888776554432111111111  1112367777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=92.96  E-value=6  Score=34.77  Aligned_cols=144  Identities=12%  Similarity=0.142  Sum_probs=72.5

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCeeeEeecc----ccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCce
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNL  141 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  141 (288)
                      ++.+++.|+.+     ..+.+||+.+.+.......    ....-.+++. -++++++.|+.+     ..+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566677654     3578888887665432211    1111122222 245566666644     3467788876653


Q ss_pred             eEEec-----cCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCcccEEEEeec-----cCCCeEEEEEcCCCCEEE
Q 023018          142 KCTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       142 ~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~p~~~~l~  207 (288)
                      ...-.     ..........+  ++++++.++.+    ..+.+||+.+.+-...-..     ......++.+  +++.++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence            32111     11111122222  56777777655    4589999887643222110     1111122222  456666


Q ss_pred             EEeCC--------------CeEEEEeCCCCc
Q 023018          208 TGSDD--------------ATLRVWNPKSGE  224 (288)
Q Consensus       208 ~~~~d--------------g~i~i~d~~~~~  224 (288)
                      .|+..              ..+.+||+.+.+
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~  413 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQ  413 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCE
Confidence            77643              247889987664

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.92  E-value=1.2  Score=33.12  Aligned_cols=31  Identities=13%  Similarity=0.357  Sum_probs=24.8

Q ss_pred             CCEEEEEEcCCC------CEEEEecCCCeEEEEECCc
Q 023018          150 GGVEWVSWHPRG------HIVLAGSEDSTVWMWNADR  180 (288)
Q Consensus       150 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~  180 (288)
                      ..+..++|||.|      -+|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999943      2788889999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.85  E-value=0.75  Score=41.20  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=45.3

Q ss_pred             CCCCEEEEecCCCeEEEEECCc----ccEEEEe-----------e-----------ccCCCeEEEEEcC----CCCEEEE
Q 023018          159 PRGHIVLAGSEDSTVWMWNADR----AAYLNMF-----------S-----------GHGSSVTCGDFTP----DGKTICT  208 (288)
Q Consensus       159 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~-----------~-----------~~~~~i~~~~~~p----~~~~l~~  208 (288)
                      ++...++++..||.+.......    +......           .           .....+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667888888999888887653    1111110           0           0123456666666    6789999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEc
Q 023018          209 GSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                      .+.|+.||+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=92.66  E-value=5.9  Score=37.00  Aligned_cols=136  Identities=16%  Similarity=0.224  Sum_probs=75.3

Q ss_pred             eCCCeEEEEEccCCeeeEeeccccCcEEEEEEe-cCCC--------EEEEEeCCCeEEEEeC----CCCceeE-----Ee
Q 023018           84 GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQ--------LLASGGLDGLVQIWDP----SSGNLKC-----TL  145 (288)
Q Consensus        84 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~-~~~~--------~l~~~~~dg~i~i~d~----~~~~~~~-----~~  145 (288)
                      +.|..+.+|++.++..-+.+......|..++.- |..+        .|+++ ....+.++-+    .+++.-.     ..
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~v  177 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVV  177 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEE
Confidence            456899999999766555544434444444432 3221        12221 2233333322    2222111     12


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc--------ccE-------------E---EEeeccCCCeEEEEEcC
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR--------AAY-------------L---NMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~-------------~---~~~~~~~~~i~~~~~~p  201 (288)
                      ......|.++.-+.+|+.+++|..|  +.+|.+.-        .++             +   ..+..|+..|..++...
T Consensus       178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq  255 (1263)
T COG5308         178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ  255 (1263)
T ss_pred             eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence            2344568888888889999998887  55565420        000             1   11123556677777777


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q 023018          202 DGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~  222 (288)
                      ....|++-.....|+-|-+..
T Consensus       256 sRg~ly~Lr~kS~Vray~itk  276 (1263)
T COG5308         256 SRGLLYVLRKKSAVRAYSITK  276 (1263)
T ss_pred             cccceeeecccceeeeEeeec
Confidence            666777777777888887653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.47  E-value=1  Score=38.36  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE--eccCCC----CEE-EEEEcCCCCEEEEecCCCeEEEE-E
Q 023018          106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--LEGPGG----GVE-WVSWHPRGHIVLAGSEDSTVWMW-N  177 (288)
Q Consensus       106 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~----~i~-~~~~~~~~~~l~~~~~dg~i~i~-d  177 (288)
                      ....+..+-..|+|+.+.+-+. ..+.++++.+......  .....+    .|+ .+..-..|.-++++..||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3456677888999997776654 6788888765432211  111111    111 11122345678888888988776 5


Q ss_pred             CCccc-----EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          178 ADRAA-----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       178 ~~~~~-----~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                      .+...     .++.++-...++..+.-....+-+++-+..|++.++.....+.+. +..   .-..+.-+++||.+.+|+
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~---~~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FER---AYQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhh---hhcCcceeeeCcccchhe
Confidence            54431     222232222333333222234457777888888887654433322 221   223566789999998887


Q ss_pred             EEeCCCcEEEEEcCCCcE
Q 023018          253 SGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~  270 (288)
                      +- ..|.|+++.+.+..+
T Consensus       374 ~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         374 SE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             ee-cCCceEEEEecCCCC
Confidence            64 567899999887543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.22  E-value=5.4  Score=32.45  Aligned_cols=134  Identities=7%  Similarity=0.102  Sum_probs=80.8

Q ss_pred             eEEEEeCCCCceeEEecc------CCCCEEEEEEcCCC-----CEEEEe-cCCCeEEEEECCcccEEEEeec--------
Q 023018          130 LVQIWDPSSGNLKCTLEG------PGGGVEWVSWHPRG-----HIVLAG-SEDSTVWMWNADRAAYLNMFSG--------  189 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~-----~~l~~~-~~dg~i~i~d~~~~~~~~~~~~--------  189 (288)
                      .|.+||+.+++.++++.-      ..+.+..+.+....     .+++.+ +..+.|.++|+.+++.-+....        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            788899999988777643      34567888887632     233333 3446899999998765443321        


Q ss_pred             -----------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-----Cc---------eeEEEcCCCccccCeEE
Q 023018          190 -----------HGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKS-----GE---------NIHVIRGHPYHTEGLTC  241 (288)
Q Consensus       190 -----------~~~~i~~~~~~p---~~~~l~~~~~dg~i~i~d~~~-----~~---------~~~~~~~~~~~~~~v~~  241 (288)
                                 ....+..++.+|   +++.|+.+...+. ++|.+.+     ..         .+..+..   .......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence                       123366667766   6667776665442 2332221     10         1122211   1234567


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ++++++|.++++--..+.|..|+..+
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTT
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCC
Confidence            88899999988888899999999886

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.20  E-value=0.9  Score=38.68  Aligned_cols=166  Identities=12%  Similarity=0.108  Sum_probs=96.0

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-e-ccccC----cEE-EEEEecCCCEEEEEeCC
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-I-QGHKD----SVS-SLAFSMDGQLLASGGLD  128 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~-~~~~~----~i~-~~~~~~~~~~l~~~~~d  128 (288)
                      .+..+..--.+|..+-..| +++.++.-+. ..+.++++.+...... + ....+    .|+ .+..-..|..++++..|
T Consensus       212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            3344566667888899999 6777666555 6788888876432211 1 11011    111 11122345567888889


Q ss_pred             CeEEEE-eCCCCce-----eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018          129 GLVQIW-DPSSGNL-----KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       129 g~i~i~-d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      |.|.-| |.+.+..     ++.++-....+..+.-..+-+-+++-+..|++..+.....+.+..-. .-..+.-+++||.
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~  368 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPN  368 (733)
T ss_pred             CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcc
Confidence            888766 4443221     11222222333333322344567777788888887765554433222 2235667889999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCce
Q 023018          203 GKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       203 ~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      +.+|++-. .|.++++.+.+..+
T Consensus       369 ~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeec-CCceEEEEecCCCC
Confidence            99988754 57799998876544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.98  E-value=5.5  Score=32.23  Aligned_cols=93  Identities=17%  Similarity=0.339  Sum_probs=58.6

Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec------CCCeEEEEECCcccEEEEeec-----cCCCeEEE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSG-----HGSSVTCG  197 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~  197 (288)
                      ..|++||..+.+....-..-.+.|+.+.|..+.++++.|.      ....+..||..+..- ..+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            3599999887776555555667899999986666666664      345688999876542 22222     24678887


Q ss_pred             EEcC-CCCEEE-EEe-C--CCeEEEEeCCC
Q 023018          198 DFTP-DGKTIC-TGS-D--DATLRVWNPKS  222 (288)
Q Consensus       198 ~~~p-~~~~l~-~~~-~--dg~i~i~d~~~  222 (288)
                      .+.. ++..+. .|. .  +..|..||=.+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            7744 443343 333 2  33577776443

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=91.78  E-value=5.5  Score=31.59  Aligned_cols=68  Identities=9%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             CCEEEEEEcCC-------CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC----CCCEEEEEeCCCeEEEE
Q 023018          150 GGVEWVSWHPR-------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP----DGKTICTGSDDATLRVW  218 (288)
Q Consensus       150 ~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p----~~~~l~~~~~dg~i~i~  218 (288)
                      ..|+|++--..       -..|+.|+.+|.|+|.|.+....+..+....-++ .+..+-    -.-++++++.||.|++.
T Consensus       177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            45777765331       2389999999999999998888777777555544 222221    22357888899988764

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.73  E-value=12  Score=35.30  Aligned_cols=159  Identities=12%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             cccCcEEEEEEe---c----CCCEEEEEeCCCeEEEEeCCCC---------------ceeEEec---cCCCCEEEEEEcC
Q 023018          105 GHKDSVSSLAFS---M----DGQLLASGGLDGLVQIWDPSSG---------------NLKCTLE---GPGGGVEWVSWHP  159 (288)
Q Consensus       105 ~~~~~i~~~~~~---~----~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~---~~~~~i~~~~~~~  159 (288)
                      ....+|..|+|.   .    ..++|++= ....+.|+...-.               .++..+.   ....+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356789999987   2    12355554 3456777762111               1222232   1344688899999


Q ss_pred             -CCCEEEEecCCCeEEEEECCccc-----EEEEeeccC----------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          160 -RGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHG----------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       160 -~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~----------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                       +...||+....|...||++....     .+.......          .....+.|.++...|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             55699999999999999992111     111111111          22347889888888888774 56889999876


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .....+... .....|..+.-+|. ..+++.-. ...|...++.+
T Consensus       235 ~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CccchhccC-CChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            553312211 13456777777764 22222222 24566666665

These proteins are found in fungi.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.72  E-value=8.4  Score=33.56  Aligned_cols=110  Identities=8%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEee-----ccCCCeEEEEEcCCC------CEEEEEe----
Q 023018          148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFS-----GHGSSVTCGDFTPDG------KTICTGS----  210 (288)
Q Consensus       148 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-----~~~~~i~~~~~~p~~------~~l~~~~----  210 (288)
                      .-...+.|+|.|++++|++--..|.|++++..++.  .+..+.     ........|+++|+-      .+|++..    
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            33457889999999877776556999999865543  221111     135678999999874      3454442    


Q ss_pred             ------CCCeEEEEeCCCC-----ceeEEEcCCC-ccccCeEEEEEcCCCCEEEEEeCC
Q 023018          211 ------DDATLRVWNPKSG-----ENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKD  257 (288)
Q Consensus       211 ------~dg~i~i~d~~~~-----~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  257 (288)
                            ....|.-|.+...     .....+...+ .....-..|.|.|||.++++.+..
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  1223444444311     1111222211 011224567899999877765544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.55  E-value=3.7  Score=38.28  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=53.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEE------Ec-CC-C---C-EEEEEeCCCcEEE
Q 023018          195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT------IS-AD-S---T-LALSGSKDGSVHM  262 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~------~~-~~-~---~-~l~~~~~dg~i~i  262 (288)
                      ..++.+|+|++.++...=|.|.+.|+..+..++.+.+.  ....+.-+.      ++ |. .   . +.+-+-.-|.+-|
T Consensus       325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGY--RDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEV  402 (1244)
T KOG2727|consen  325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGY--RDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEV  402 (1244)
T ss_pred             ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhccc--ccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHH
Confidence            45788999999998888899999999888777777664  222222222      01 21 1   1 1233456788999


Q ss_pred             EEcCCCcEEEEe
Q 023018          263 VNITTGKVCCLN  274 (288)
Q Consensus       263 wd~~t~~~~~~~  274 (288)
                      |.+.+|-.+..+
T Consensus       403 W~~q~gpRV~Af  414 (1244)
T KOG2727|consen  403 WQMQTGPRVLAF  414 (1244)
T ss_pred             HHhccCCeEEEE
Confidence            999999888766

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.11  E-value=4.6  Score=31.88  Aligned_cols=94  Identities=15%  Similarity=0.248  Sum_probs=52.3

Q ss_pred             eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEeCCC---CceeEEEcCCCccccCeEEEEEc
Q 023018          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTIS  245 (288)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d--g~i~i~d~~~---~~~~~~~~~~~~~~~~v~~~~~~  245 (288)
                      .-.+||+.+++....-........+-.+.|+|+.|.+|+. +  ..+++++...   ..........-.....-.+...-
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            4568998887543322222233334457789999998875 2  3588888654   11111111100123344455667


Q ss_pred             CCCCEEEEEeCCC-cEEEEEc
Q 023018          246 ADSTLALSGSKDG-SVHMVNI  265 (288)
Q Consensus       246 ~~~~~l~~~~~dg-~i~iwd~  265 (288)
                      |||++|+.|+... ...+|.-
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~  147 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPP  147 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCC
Confidence            7999999988764 3444443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.74  E-value=9.4  Score=32.33  Aligned_cols=194  Identities=10%  Similarity=0.163  Sum_probs=106.6

Q ss_pred             EEEcCC--CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe----cCCCE--EEEEe-CC---CeEEEEeCC
Q 023018           70 VACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS----MDGQL--LASGG-LD---GLVQIWDPS  137 (288)
Q Consensus        70 ~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---g~i~i~d~~  137 (288)
                      |-.+|.  ...+++.....+-+.+||+.. +.+..+.  .+..+.+..-    -.++.  |++++ .+   ..|++|.+.
T Consensus        59 IWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   59 IWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             EE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             EecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence            444442  446777888889999999875 4455553  2333333321    23442  44443 32   469999775


Q ss_pred             CC-ceeEEecc-------CCCCEEEEEE--cC-CCC-EEEEecCCCeEEEEECC---cc----cEEEEeeccCCCeEEEE
Q 023018          138 SG-NLKCTLEG-------PGGGVEWVSW--HP-RGH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       138 ~~-~~~~~~~~-------~~~~i~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~  198 (288)
                      .. ..+..+..       ....++.+|+  ++ ++. +.++..++|.+..|-+.   .+    ++++.|.. .+.+-.+.
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV  214 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV  214 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence            31 22333321       1123667776  33 344 56667788988877664   22    45677764 45788888


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCC--CceeEEE--cCCCccccCeEEEEEcC--CC-CEEEEEe-CCCcEEEEEcCC
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKS--GENIHVI--RGHPYHTEGLTCLTISA--DS-TLALSGS-KDGSVHMVNITT  267 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~--~~~~~~~--~~~~~~~~~v~~~~~~~--~~-~~l~~~~-~dg~i~iwd~~t  267 (288)
                      ......+|+.+-.+.-|.-|+...  +.....+  .........+-.|++-.  ++ .+|++++ .+++..+|+...
T Consensus       215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            888888999999998888887752  2211222  11112345677776643  33 3555444 467899999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00564 PQQ beta-propeller repeat

Probab=90.60  E-value=0.84  Score=22.96  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          250 LALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       250 ~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      .+++++.+|.++.+|..+|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677888999999999999998764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.48  E-value=9.2  Score=31.85  Aligned_cols=70  Identities=13%  Similarity=0.052  Sum_probs=40.8

Q ss_pred             CCeEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          192 SSVTCGDFTP-------DGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       192 ~~i~~~~~~p-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                      ..+..+.|.+       .+.+|++.-..+.|....+..+..+..... .......+..+++.|||.++++-..+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4566666653       344555555566787777764433221111 111344789999999998888877888775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.08  E-value=9.4  Score=31.30  Aligned_cols=121  Identities=11%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-C----eEEEEEcCCCCEEEEEeCCCeEEEEeCC-----
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-S----VTCGDFTPDGKTICTGSDDATLRVWNPK-----  221 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~----i~~~~~~p~~~~l~~~~~dg~i~i~d~~-----  221 (288)
                      ++++...++|.+|+++-.-..|.+.+-++++.+..+.+... .    -...+|..+-+++-.+..++.|.++|=.     
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~  225 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFN  225 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCC
Confidence            67788888899999998889999999999998888865511 1    1123333344444444556667777642     


Q ss_pred             ---------------CCc--eeEEEc--CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          222 ---------------SGE--NIHVIR--GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       222 ---------------~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                                     +..  .+..+.  ........--++..-|+|+.|+.=+..|.+.-++. .|+++..
T Consensus       226 ~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~-~G~vv~~  295 (299)
T PF14269_consen  226 GTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTP-DGEVVWE  295 (299)
T ss_pred             CCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECC-CCCEEEE
Confidence                           111  011111  00011111223455677888877777776666653 3555543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.03  E-value=17  Score=34.25  Aligned_cols=162  Identities=11%  Similarity=0.053  Sum_probs=99.0

Q ss_pred             eEee-cCCCCEEEEEEc---CC---CCcEEEEEeCCCeEEEEEcc------C---------CeeeEeecc---ccCcEEE
Q 023018           58 HIFS-GHSDEVYSVACS---PT---DATLVATGGGDDKGFFWRIN------Q---------GDWASEIQG---HKDSVSS  112 (288)
Q Consensus        58 ~~~~-~h~~~v~~~~~~---~~---~~~~l~~~~~dg~i~iw~~~------~---------~~~~~~~~~---~~~~i~~  112 (288)
                      ..+. .-..+|..|+|.   ..   ...+|++-. ...+.|+...      .         ..++..+..   ...+..+
T Consensus        72 ~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD  150 (765)
T PF10214_consen   72 GAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD  150 (765)
T ss_pred             ceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence            3445 567899999998   21   224555544 4567777721      1         122333331   2346778


Q ss_pred             EEEecC-CCEEEEEeCCCeEEEEeCCCCc-----eeEEeccC----------CCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 023018          113 LAFSMD-GQLLASGGLDGLVQIWDPSSGN-----LKCTLEGP----------GGGVEWVSWHPRGHIVLAGSEDSTVWMW  176 (288)
Q Consensus       113 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~  176 (288)
                      ++|+|. .+.||+....|...||++....     ........          .+.-..+.|.++.+.|++++. ..+.++
T Consensus       151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~  229 (765)
T PF10214_consen  151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLI  229 (765)
T ss_pred             EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEE
Confidence            999984 4589999999999999992111     11111111          123447889888888888877 778999


Q ss_pred             ECCcccEEE--EeeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 023018          177 NADRAAYLN--MFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       177 d~~~~~~~~--~~~~~~~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~  222 (288)
                      |+++.....  ........|..+.-+|. ..+++.-+ ...|...++..
T Consensus       230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  230 DFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             ECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            998875533  12224567888888885 22333332 35687778776

These proteins are found in fungi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-24
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-21
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-21
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-20
2h9l_A	329	Wdr5delta23 Length = 329		6e-21
2h9l_A	329	Wdr5delta23 Length = 329		1e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-21
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-21
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-21
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-21
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-21
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-21
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		8e-21
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-21
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-21
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-21
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		9e-21
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-09
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-17
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-16
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-10
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-16
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-09
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-13
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-09
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-09
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-13
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-12
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-12
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-12
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-12
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-12
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-12
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-08
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-11
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-11
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-10
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		7e-08
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		4e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-07
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		7e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		7e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		8e-06
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		9e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              +GHS  V+ VA SP D   +A+   D     W  N G     + GH  SV  +AFS 
Sbjct: 51  QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 108
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           DGQ +AS   D  V++W+  +G L  TL G    V  V++ P G  + + S+D TV +WN
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
            +    L   +GH SSV    F+PDG+TI + SDD T+++WN ++G+ +  + GH     
Sbjct: 168 RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVN 264
           G   +  S D     S S D +V + N
Sbjct: 226 G---VAFSPDGQTIASASDDKTVKLWN 249

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 125 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 161 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 207

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 185

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 120 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 239 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 156 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 202

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 99  LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 157
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 135 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 181

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 103 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 185

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 127 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 163 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 209

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 104 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 162
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 140 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 186

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 108 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 166
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 227 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 144 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 190

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 109 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 191

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 102 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 160
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 138 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LA+   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G+ +  +   P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS++ F+ DG
Sbjct: 106 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
Query: 120 QLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
            L+ S   DGL +IWD +SG  LK  ++     V +V + P G  +LA + D+T+ +W+ 
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 179 DRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
            +   L  ++GH +   C   +F+   GK I +GS+D  + +WN ++ E +  ++GH
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G     ++  P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
           +  Y  MF+  GH  +V+   F+P+G+ + + S D  +++W    G+    I GH     
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL-------NFQYTC 279
           G++ +  S+DS L +S S D ++ + ++++GK  CL       N+ + C
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCC 116

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 93/172 (54%), Gaps = 5/172 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH  +VSS+ FS +G+ LAS   D L++IW    G  + T+ G   G+  V+W    +
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+W+ K+
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           G     ++  P H++ ++ +  + D +L +S S DG   + +  +G+  CL 
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLK 188

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
           +  Y  MF+  GH  +V+   F+P+G+ + + S D  +++W    G+    I GH     
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL-------NFQYTC 279
           G++ +  S+DS L +S S D ++ + ++++GK  CL       N+ + C
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCC 116

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 19/235 (8%)
Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +  SGH   V  V   P  + +V+    D     W    GD+   ++GH DSV  ++F  
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            G+LLAS   D  +++WD        T+ G    V  VS  P G  +++ S D T+ MW 
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                 +  F+GH   V       DG  I + S+D T+RVW   + E    +R H +  E
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 238 GLTCLTISADSTLA-----------------LSGSKDGSVHMVNITTGKVCCLNF 275
            ++    S+ S+++                 LSGS+D ++ M +++TG +C +  
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTL 334

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193
           W P     K  L G    V  V +HP   ++++ SED+T+ +W+ +   +     GH  S
Sbjct: 94  WIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
           V    F   GK + + S D T+++W+ +  E I  + GH ++   ++ ++I  +    +S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVS 209
Query: 254 GSKDGSVHMVNITTGKVCCLNF 275
            S+D ++ M  + TG  C   F
Sbjct: 210 ASRDKTIKMWEVQTG-YCVKTF 230

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           +  H   GH+    +V C       V +G  D     W I  G     + GH  +V  + 
Sbjct: 190 ECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
           +  DG+ + SG  D +V++WDP +     TL+G    V   S    G  V++GS D+++ 
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIR 302
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
           +W+ +    ++  +GH  S+T G    D   + +G+ D+T+++W+ K+G+ +  ++G   
Sbjct: 303 VWDVETGNCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
           H   +TCL  + +    ++ S DG+V + ++ TG+
Sbjct: 361 HQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGE 393

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
             GH+  V  +A +P    ++ +   D     W++     N G     ++GH   VS + 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++GS D T+ 
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
           +WN      Y      H   V+C  F+P+     I +   D  ++VWN     N  +   
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 187
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
           H  HT  L  +T+S D +L  SG KDG   + ++  GK
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
             GH+  V  +A +P    ++ +   D     W++     N G     ++GH   VS + 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++GS D T+ 
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
           +WN      Y      H   V+C  F+P+     I +   D  ++VWN     N  +   
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 210
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
           H  HT  L  +T+S D +L  SG KDG   + ++  GK
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 51   EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
            E P++   +FS   GH   V  +  +    TL+++   D     W    GD+   +Q H+
Sbjct: 996  ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1051
Query: 108  DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
            ++V       D +LL S   DG V++W+  +G ++       G V   +         + 
Sbjct: 1052 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 168  SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
            S D T  +W+ D  + L+   GH   V C  F+ DG  + TG D+  +R+WN   G+ +H
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Query: 228  ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
                  V  G   H   +T +  S DS   +S    G +   N+ TG
Sbjct: 1171 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 51   EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
            E P++   +FS   GH   V  +  +    TL+++   D     W    GD+   +Q H+
Sbjct: 989  ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1044
Query: 108  DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
            ++V       D +LL S   DG V++W+  +G ++       G V   +         + 
Sbjct: 1045 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 168  SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
            S D T  +W+ D  + L+   GH   V C  F+ DG  + TG D+  +R+WN   G+ +H
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Query: 228  ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
                  V  G   H   +T +  S DS   +S    G +   N+ TG
Sbjct: 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 13/220 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLA 114
              H+D V ++A    +A ++ +   D     W++ + D A       + GH   V  + 
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            S DGQ   SG  DG +++WD ++G       G    V  V++      +++ S D T+ 
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 175 MWNADRAAYLNMFSG---HGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVI 229
           +WN        +  G   H   V+C  F+P+    TI + S D T++VWN  + +    +
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
            GH   T  ++ + +S D +L  SG KDG V + ++  GK
Sbjct: 558 AGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 17/224 (7%)
Query: 60  FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASE---------IQGHKD 108
            +GH   V S+AC  +P  AT V +   D     W  N    +SE         ++GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
            VS +A S +G    S   D  +++W+  +G  +    G    V  V++ P    +++G 
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 169 EDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN 225
            D+ + +WN        +  G H   V+C  F+P  D   I +G  D  ++VW+  +G  
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
           +  ++GH   T  +T +T+S D +L  S  KDG   + ++T G+
Sbjct: 189 VTDLKGH---TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
           +   I +GH+    SV C   D  ++ TG  D     W +N G+  + +  H ++V  L 
Sbjct: 164 ECKRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 115 FSMDGQLLASGGLDGLVQIWD---PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
           F  +  ++ +   D  + +WD   P+   L+  L G    V  V +  +   +++ S D 
Sbjct: 221 F--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDR 276
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           T+ +WN     ++   +GH   + C  +    + + +GS D T+R+W+ + G  + V+ G
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
           H    E + C  I  D+   +SG+ DG + +
Sbjct: 335 HE---ELVRC--IRFDNKRIVSGAYDGKIKV 360

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 9/183 (4%)
Query: 51  EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSV 110
           + P++     S  SD      C   D   +ATG  D     W I        +QGH+  +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSE 169
            SL +   G  L SG  D  V+IWD  +G    TL     GV  V+  P  G  + AGS 
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 170 DSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           D  V +W+++    +          +GH  SV    FT DG+++ +GS D ++++WN ++
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 223 GEN 225
             N
Sbjct: 288 ANN 290

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-------------- 151
           H   V  + FS DG+ LA+G  +   Q++  S G+L   L                    
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 152 ----VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
               +  V + P G  +  G+ED  + +W+ +    + +  GH   +   D+ P G  + 
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNIT 266
           +GS D T+R+W+ ++G+    +       +G+T + +S  D     +GS D +V + +  
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE----DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 267 TG 268
           TG
Sbjct: 238 TG 239

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80  VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
           +  G  D +   +  N G+   + + H D + S+A       + SG  D  V++W+  ++
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
             L+ T EG    V  V+++P+     A G  D TV +W+  ++     + +G    V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
            D+   PD   + T SDD T+++W+ ++   +  + G   H   ++         + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
           S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80  VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
           +  G  D +   +  N G+   + + H D + S+A       + SG  D  V++W+  ++
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
             L+ T EG    V  V+++P+     A G  D TV +W+  ++     + +G    V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
            D+   PD   + T SDD T+++W+ ++   +  + G   H   ++         + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
           S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80  VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
           +  G  D +   +  N G+   + + H D + S+A       + SG  D  V++W+  ++
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
             L+ T EG    V  V+++P+     A G  D TV +W+  ++     + +G    V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
            D+   PD   + T SDD T+++W+ ++   +  + G   H   ++         + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
           S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
           F  H D + S+A  PT   +++  G DD   K + W   + +WA E   +GH+  V  +A
Sbjct: 93  FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
           F+  D    ASG LD  V++W         TL  G   GV +V ++P      ++  S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            T+ +W+    + +    GH S+V+   F P    I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 80  VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
           +  G  D +   +  N G+   + + H D + S+A       + SG  D  V++W+  ++
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
             L+ T EG    V  V+++P+     A G  D TV +W+  ++     + +G    V  
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
            D+   PD   + T SDD T+++W+ ++   +  + G   H   ++         + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKV 270
           S+DG++ + N +T KV
Sbjct: 247 SEDGTLKIWNSSTYKV 262

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRI------NQGDWASEIQGHKDSVSSLAFS-MDG 119
           V + A +P+    +A GG D+K   + +      N       +  H + +S+ +F+  D 
Sbjct: 109 VMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWN 177
           Q+L + G DG   +WD  SG L  +  G G  V  +   P   G+  ++G  D    +W+
Sbjct: 168 QILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                 +  F  H S V    + P G    +GSDDAT R+++ ++   +  I        
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIF 285
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF 275
           G + +  S    L  +G  D ++++ ++  G    + F
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+   Y   C   D   + T  GD     W I  G   +   GH   V SL+ + D 
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           +L  SG  D   ++WD   G  + T  G    +  + + P G+    GS+D+T  ++  D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
             A   + +    ++ CG     F+  G+ +  G DD    VW+    +   V+ GH   
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
              ++CL ++ D     +GS D  + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+   Y   C   D   + T  GD     W I  G   +   GH   V SL+ + D 
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           +L  SG  D   ++WD   G  + T  G    +  + + P G+    GS+D+T  ++  D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
             A   + +    ++ CG     F+  G+ +  G DD    VW+    +   V+ GH   
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
              ++CL ++ D     +GS D  + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+   Y   C   D   + T  GD     W I  G   +   GH   V SL+ + D 
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           +L  SG  D   ++WD   G  + T  G    +  + + P G+    GS+D+T  ++  D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
             A   + +    ++ CG     F+  G+ +  G DD    VW+    +   V+ GH   
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
              ++CL ++ D     +GS D  + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+   Y   C   D   + T  GD     W I  G   +   GH   V SL+ + D 
Sbjct: 150 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 207
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           +L  SG  D   ++WD   G  + T  G    +  + + P G+    GS+D+T  ++  D
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 265
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
             A   + +    ++ CG     F+  G+ +  G DD    VW+    +   V+ GH   
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
              ++CL ++ D     +GS D  + + N
Sbjct: 326 ---VSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +GH+   Y   C   D   + T  GD     W I  G   +   GH   V SL+ + D 
Sbjct: 139 LAGHTG--YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
           +L  SG  D   ++WD   G  + T  G    +  + + P G+    GS+D+T  ++  D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--D 254
Query: 180 RAAYLNMFSGHGSSVTCG----DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
             A   + +    ++ CG     F+  G+ +  G DD    VW+    +   V+ GH   
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVN 264
              ++CL ++ D     +GS D  + + N
Sbjct: 315 ---VSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFW-------RINQGDWASEIQGHKDSVSSL 113
           + H   + SVA  P   +L+A G  D     W       R  + D  + I+GH++ V  +
Sbjct: 55  TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 114 AFSMDGQLLASGGLDGLVQIW--DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSE 169
           A+S DG  LA+   D  V IW  D S    +C   L+     V+ V WHP   ++ + S 
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 170 DSTVWMWNA--DRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWN 219
           D TV +W    D    + + +GH  +V   DF  T     +C+GSDD+T+RVW 
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 62  GHSDEVYSVAC---SPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFS 116
            H D ++SVA       ++  V TG  DD  K + WR  + D    ++GH+  V S+  S
Sbjct: 30  AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 117 MDGQLLASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEW-VSWHPRGHIVLAGSEDSTVW 174
               + AS  LD  +++WD  +G  +K    GP     W +++ P    +  G+    V 
Sbjct: 90  HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTHVGKVN 147
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
           ++  +           G  +    ++PDGK + +G+ D  + +++  +G+ +H + GH  
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
               +  LT S DS L ++ S DG + + ++
Sbjct: 208 ---PIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SM 117
            SGH   V+  A       ++ +G  D     W I +G      +GH  +V  L      
Sbjct: 158 LSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 118 DGQLLASGGLDGLVQIWD-------PSSGN----------------LKCTLEGPGGGVEW 154
           + + + +G  D  + +W        P  G                     L G    V  
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
           VS H  G+IV++GS D+T+ +W+  +   L + SGH   +    +  + K   + S D T
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
           +R+W+ ++GE ++ ++GH      L  L   +D  L +S + DGS+ 
Sbjct: 334 IRIWDLENGELMYTLQGHT----ALVGLLRLSDKFL-VSAAADGSIR 375

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 78  TLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134
           TL+A+ GGD +   W      W  +    +GH+ +V  +A+S  G  LAS   D    IW
Sbjct: 29  TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 135 DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------ 180
             +  + +C  TLEG    V+ V+W P G+++   S D +VW+W  D             
Sbjct: 89  KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 181 -------------------AAY----------------LNMFSGHGSSVTCGDFTPDGKT 205
                              A+Y                     GH S+V    F P G+ 
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 206 ICTGSDDATLRVWN 219
           + + SDD T+R+W 
Sbjct: 209 LASCSDDRTVRIWR 222

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 102 EIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
            +  H DS    LA++  G LLAS G D  ++IW     +  C     EG    V  V+W
Sbjct: 10  RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 158 HPRGHIVLAGSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
            P G+ + + S D+T  +W  N D    +    GH + V    + P G  + T S D ++
Sbjct: 70  SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VCCLN 274
            VW     +    +     HT+ +  +       L  S S D +V +        VCC  
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189
Query: 275 FQ 276
            +
Sbjct: 190 LE 191

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 24/193 (12%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
           + ++GH  SV +     +   + +G  D  ++++D  +      L G  GGV W   +  
Sbjct: 115 TTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV-WALKYAH 172
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218
           G I+++GS D TV +W+  +    ++F GH S+V C D     + K I TGS D TL VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 219 N-------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSV 260
                   P  GE        H    +PY    L     +  T+S    + +SGS D ++
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTL 292
Query: 261 HMVNITTGKVCCL 273
            + ++   K  CL
Sbjct: 293 IVWDVAQXK--CL 303

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           +QGH   V  LA+  DG  LASGG D +VQIWD  S   K T       V+ V+W P   
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 163 IVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT--GSDDATLRV 217
            +LA   G+ D  +  WNA   A +N     GS VT   ++P  K I +  G  D  L +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 218 WN 219
           W+
Sbjct: 332 WS 333

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 243

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +  ++++GS D T+ 
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 127 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 182
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-----YTLSAQDEVFSL 237

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 89/240 (37%), Gaps = 20/240 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
             GH+  V S+A S     L+ +   D     W++   D          +GH   V    
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
            + DG    S   D  +++WD ++G       G    V  V    +   +++GS D T+ 
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
           +W   +   L    GH   V+     P+ K      TI +  +D  ++ WN        +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFVL 288
                 H   +  LT S D TL  S  KDG + + N+   K       YT  A D  F L
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX-----YTLSAQDEVFSL 243

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 62/264 (23%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
             GHS +VYS+  +P +   + +   D +   W          I+ H   V   AF+ +G
Sbjct: 62  LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 120 QLLASGGLDGLVQIWDPSS-----GNLKCTL-----EGPGGGVEWV-------------- 155
           Q +A GGLD    I++ SS     GN+  +      +G     ++V              
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 156 -----------------SWHPRGH---------------IVLAGSEDSTVWMWNAD-RAA 182
                            S  P GH               + ++GS D+TV +W+    + 
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG---- 238
            +  + GH   +    F PDG+   TGSDD T R+++ ++G  + V    P   +     
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 239 LTCLTISADSTLALSGSKDGSVHM 262
           +T +  S    L  +G  +G  ++
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYV 324

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
           TL+G  G V  + W P  + +++ S+D  + +WNA  +   +    H   V    F P+G
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 204 KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTEGLTCLTISADSTLALSGSK 256
           +++  G  D+   ++N  S  +         V+ GH  +    +C  +    T  ++GS 
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS--SCQYVPDQETRLITGSG 178
Query: 257 DGSVHMVNITTGK 269
           D +  + ++TTG+
Sbjct: 179 DQTCVLWDVTTGQ 191

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 15/172 (8%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI------------NQGDWASEIQGHK 107
           F GH  EVYSVA SP D   + + G + +   W I            N  DW S ++   
Sbjct: 114 FVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
              S+          AS G DG +++W+ ++  ++ T +     V  +S  P G  +  G
Sbjct: 173 IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATG 231
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
            +D  + +W+     Y       GS++    F P  + +  G+D   ++++N
Sbjct: 232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFN 282

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 35/249 (14%)
Query: 59  IFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQ-------GDWASEIQGH 106
           I  GHSD V S+    +     D+ ++ +G  D     W++ +       G     + GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166
              VS LA S +     S   D  +++WD  +G       G    V  V++ P    +L+
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 167 GSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKT----------ICTGSDDAT 214
              +  + +WN       +      H   V+C  ++P  K+            +   D  
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           L+VWN     N  +      H   +  L+IS +     +G KD  + + +I       LN
Sbjct: 196 LKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-------LN 244
Query: 275 FQYTCVAYD 283
             Y    +D
Sbjct: 245 LTYPQREFD 253

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSW 157
           + GH   V  L ++ DG+ LASGG D LV +W  + G      L+ T     G V+ V+W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAW 204
Query: 158 HPRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA- 213
            P    VLA   G+ D  + +WN    A L+    H S V    ++P  K + +G   A 
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 214 -TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
             L +W   +   +  ++G   HT  +  LT+S D     S + D ++ +
Sbjct: 264 NQLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 310

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
           + GH   V  L ++ DG+ LASGG D LV +W  + G        T     G V+ V+W 
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
           P    VLA   G+ D  + +WN    A L+    H S V    ++P  K + +G   A  
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 344
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
            L +W   +   +  ++G   HT  +  LT+S D     S + D ++ +
Sbjct: 345 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 390

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
           + GH   V  L ++ DG+ LASGG D LV +W  + G        T     G V+ V+W 
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
           P    VLA   G+ D  + +WN    A L+    H S V    ++P  K + +G   A  
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 355
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
            L +W   +   +  ++G   HT  +  LT+S D     S + D ++ +
Sbjct: 356 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 401

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------GDWASEIQ 104
           +HI  GH  E+ +V+ SP    ++AT   D +   W + +            G  +  ++
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 105 ----GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEW- 154
                H   V+ L F+ DG  L + G D  +++W+ S+G     N          G+++ 
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
           VS       V      ST+ ++       + M  GH  +V C  F  + + + +GS D  
Sbjct: 299 VSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357
Query: 215 LRVWNPKSGENI 226
           +  W P   E +
Sbjct: 358 ILAWVPSLYEPV 369

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNAD 179
           L+A G     VQ+ D  SG+    L+G    +  VSW PR   +LA  S DS V +W+  
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 180 RA----------------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
           RA                A  +  + H   V    FT DG  + T   D  +R+WN  +G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 224 ENIHVIRG 231
           EN  V  G
Sbjct: 278 ENTLVNYG 285

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 402 IMQVW--QMAENVY 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
           D+  IF+GHS  V  VA      +L  +   D K   W  R N     S  +  H   V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  T E     +  V W P    +LA S 
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
            +++W  +  ENI+
Sbjct: 400 IMQIW--QMAENIY 411

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 224 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 404 IMQVW--QMAENVY 415

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 103 IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
           + GH   V  +A+   +  ++ASG  D  V +W+   G L         TLEG    V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
           V+WHP    ++L+   D+ + +W+    A +       H  ++   D++ DG  ICT   
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC 271
           D  +RV  P+ G                   T+ A+      G++   VH V ++ GK+ 
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 CLNF 275
              F
Sbjct: 236 TTGF 239

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+ +IF+GH+  V  VA      +L  +   D K   W     N    +  +  H   V+
Sbjct: 226 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  EN++
Sbjct: 406 IMQVW--QMAENVY 417

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHK-- 107
           +S   FS HS  V +V  +     ++A+GG + + F W +N+      ++     G    
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
Query: 108 --DSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEW----VSWH 158
             D V SLA++     + AS G      IWD  +    +  +   P  G++     V WH
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 159 PRGHIVLAGS----EDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFT-PDGKTICTGSD 211
           P+    +A +     D ++ +W+   A      +  GH   +   D+   D   + +   
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 212 DATLRVWNPKSGENI 226
           D T+ +WNP+S E +
Sbjct: 284 DNTVLLWNPESAEQL 298

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
           D+  IF+GHS  V  VA      +L  +   D K   W  R N     S  +  H   V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  T E     +  V W P    +LA S 
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
             ++W  +  ENI+
Sbjct: 400 IXQIW--QXAENIY 411

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 32/182 (17%)
Query: 105 GHKDSVSSLAF-SMDGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEWVS 156
           GH   V  +A+   +  ++ASG  D  V +W+   G L         TLEG    V  V+
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 157 WHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDA 213
           WHP    ++L+   D+ + +W+    A +       H  ++   D++ DG  ICT   D 
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL 273
            +RV  P+ G                   T+ A+      G++   VH V ++ GK+   
Sbjct: 199 RVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKILTT 237
Query: 274 NF 275
            F
Sbjct: 238 GF 239

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
           D+  IF+GH+  V  V+      +L  +   D K   W     N    +  +  H   V+
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
            L+F+   + +LA+G  D  V +WD  +  LK  + E     +  V W P    +LA S 
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
            D  + +W+  +                 L +  GH + ++   + P+    IC+ S+D 
Sbjct: 338 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 397
Query: 214 TLRVWNPKSGENIH 227
            ++VW  +  ENI+
Sbjct: 398 IMQVW--QMAENIY 409

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 25/224 (11%)
Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
            +G +  + SV   P+    + +G  D+    +      + S    H   V S+ ++ DG
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDST 172
            L AS G DG + +++   G      E          G V  ++W P G  + + S D T
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPD--------GKTICTGSDDATLRVWNPKSGE 224
           + +WN    A L +      ++  G    D         + + + S +  +   NP+ G 
Sbjct: 263 IKIWNV---ATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS 315
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
              V  GH    + +T L+ SAD     S   +G ++  +I+TG
Sbjct: 316 IDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTG 356

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 138 SGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196
           +G     L G    +  V + P R   +++GS+D+TV ++      + + F  H   V  
Sbjct: 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 195
Query: 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR----GHPYHTEGLTCLTISADSTLAL 252
             + PDG    +   D T+ ++N   G    V       +  H+  +  LT S D T   
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 253 SGSKDGSVHMVNITTGKV 270
           S S D ++ + N+ T KV
Sbjct: 256 SASADKTIKIWNVATLKV 273

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 87  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 86  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 82  LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
           LLA  G  G+++I +P +        G G  +  + +HPR  +++L+ S+D  + +WN  
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
               + +F    GH   V   D+   G+ I +   D +L++W   S   ++ I+
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
Query: 68  YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127
           Y++A SP D+ +  +   D     W ++      + QGH D  S +  S DG  L +GGL
Sbjct: 145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187
           D  V+ WD   G  +         +  + + P G  +  G E S V + + ++     + 
Sbjct: 204 DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247
             H S V    F   GK   +   D  L  W    G +I   +     +  +    IS D
Sbjct: 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVD 317
Query: 248 STLALSGSKDGSVHMVNI 265
               ++GS D    +  +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
           F ++I +     ++ GH   +S L F+   +LL S   DG ++IW   +GN +    G  
Sbjct: 230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +   SW      V++ S D +V +W+  +   L +    G  +  G  + DG+     
Sbjct: 290 QSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348
Query: 210 SDDATLRVWNPK 221
             D  + V++ K
Sbjct: 349 FMDGQVNVYDLK 360

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
           H D V  LA   DG  ++    DGL+++ D  +G++  T EG    V  +   P G IV 
Sbjct: 183 HNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
            G ED TV +W+ +  +   + +    S+   D   +G  I  GS D  +R+++ +   
Sbjct: 242 CG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDII-VGSSDNLVRIFSQEKSR 298

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
           G  +G +++ D S+ NL+  + +     +  + + P G  +++ S+D  + +W+    + 
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
                GH ++VT       G+ + + S D T+R+W   +G  IH    + +P+       
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 242 LTISADSTL-ALSGSKDGSVHM 262
           L +  D  L  +S SK  ++  
Sbjct: 231 LFVGTDRQLHEISTSKKNNLEF 252

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
           G  +G +++ D S+ NL+  + +     +  + + P G  +++ S+D  + +W+    + 
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
                GH ++VT       G+ + + S D T+R+W   +G  IH    + +P+       
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 242 LTISADSTL-ALSGSKDGSVHM 262
           L +  D  L  +S SK  ++  
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEF 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.52
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.51
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.33
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.28
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.16
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.07
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.02
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.91
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.88
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.86
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.7
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.64
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.54
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.29
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.15
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.09
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.05
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.92
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.77
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.65
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.57
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.53
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.46
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.21
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.17
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.11
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.9
3ott_A	758	Two-component system sensor histidine kinase; beta	96.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.86
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.64
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.45
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.34
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.32
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.06
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.94
3ott_A	758	Two-component system sensor histidine kinase; beta	95.81
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.43
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.86
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.84
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.84
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.64
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.21
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.25
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.21
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	89.15
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.79
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.78
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.01
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	85.26
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	85.07
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.48
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.27
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	83.0
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	82.88
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.53

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-42  Score=281.82  Aligned_cols=230  Identities=21%  Similarity=0.307  Sum_probs=209.7

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      +.+..+++.+|.+.|++++|+| ++.+|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|+
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             cceeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            3466789999999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEe
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~  210 (288)
                      +||+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999887 45577889999999999999 678999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      .|+.|++||++++.....+...  +...+..+.|+|  ++.+|++|+.||.|++||+++++++..+    ..+.+++|+|
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence            9999999999888776666543  567889999987  6789999999999999999999999887    4567777877


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       239 ~  239 (304)
T 2ynn_A          239 T  239 (304)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.5e-42  Score=289.11  Aligned_cols=227  Identities=27%  Similarity=0.446  Sum_probs=212.9

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .....+.+|.++|++++|+| ++.+|++|+.||+|++||+.+++....+.+|...|++++|+|++++|++|+.||+|++|
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CceEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34678899999999999999 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      |+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...|.++.|+|++.+|++|+.|+.
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--------------------STLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |++||++++.....+..   |...|.+++|+|+                    +.+|++|+.||.|++||+++++++..+
T Consensus       258 v~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~  334 (410)
T 1vyh_C          258 VRVWVVATKECKAELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  334 (410)
T ss_dssp             EEEEETTTCCEEEEECC---CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCceeeEecC---CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            99999999988888876   7789999999996                    678999999999999999999999887


Q ss_pred             c----ceEEEEEeec
Q 023018          275 F----QYTCVAYDLD  285 (288)
Q Consensus       275 ~----~~~~~~~~~d  285 (288)
                      .    .+.+++|+|+
T Consensus       335 ~~h~~~v~~v~~~~~  349 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSG  349 (410)
T ss_dssp             ECCSSCEEEEEECSS
T ss_pred             ECCCCcEEEEEEcCC
Confidence            3    4677788765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.2e-42  Score=280.34  Aligned_cols=226  Identities=24%  Similarity=0.345  Sum_probs=212.2

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ....+.+|...|.+++|+| ++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++|+.+|.|++|+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             EEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            3456889999999999999 778999999999999999999999999998999999999999999999999999999999


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      +.+++....+..+...+.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|++++|+|++++|++|+.|+.|
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i  230 (321)
T 3ow8_A          151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI  230 (321)
T ss_dssp             TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred             cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence            99999998998898999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ++||++++.....+.+   |...|.+++|+|++.+|++++.||.|++||+.+++++..+    ..+.+++|+|+
T Consensus       231 ~iwd~~~~~~~~~~~~---h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          231 KIYDVQHANLAGTLSG---HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             EEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECCCcceeEEEcC---CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            9999999988888877   7889999999999999999999999999999999999988    45667777765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.9e-41  Score=276.13  Aligned_cols=227  Identities=23%  Similarity=0.371  Sum_probs=207.3

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----CeeeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      .....+.+|.++|++++|+|.++.+|++|+.|++|++|++..     +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            455688999999999999996678999999999999999864     345677889999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC------C
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD------G  203 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~------~  203 (288)
                      +|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++ +..+..+.+|...+.++.|+|.      +
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999996 5677888899999999999995      4


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEE
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCV  280 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~  280 (288)
                      ..|++++.|+.|++||+++++....+.+   |...|.+++|+|++.+|++++.||.|++||+.+++++..+   ..+.++
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  243 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQFQIEADFIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL  243 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECC---CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred             cEEEEEeCCCEEEEEECCcchhheeecC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence            4899999999999999999888887776   7889999999999999999999999999999999988877   567888


Q ss_pred             EEeec
Q 023018          281 AYDLD  285 (288)
Q Consensus       281 ~~~~d  285 (288)
                      +|+|+
T Consensus       244 ~~sp~  248 (319)
T 3frx_A          244 AFSPN  248 (319)
T ss_dssp             EECSS
T ss_pred             EEcCC
Confidence            88876

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-41  Score=287.34  Aligned_cols=229  Identities=20%  Similarity=0.363  Sum_probs=214.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..+....+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|+
T Consensus       139 ~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~  217 (410)
T 1vyh_C          139 TGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK  217 (410)
T ss_dssp             TCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence            3456788899999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCC----------
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD----------  202 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~----------  202 (288)
                      +||+.++..+..+.+|...+.++.|+|++.+|++|+.||.|++||+++++....+..|...|.+++|+|+          
T Consensus       218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996          


Q ss_pred             ----------CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          203 ----------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       203 ----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                                +.+|++|+.|+.|++||++++..+..+.+   |...|.+++|+|++.+|++|+.||.|++||+.+++++.
T Consensus       298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence                      67899999999999999999999888887   77899999999999999999999999999999999888


Q ss_pred             Ee----cceEEEEEeec
Q 023018          273 LN----FQYTCVAYDLD  285 (288)
Q Consensus       273 ~~----~~~~~~~~~~d  285 (288)
                      .+    ..+.+++|+|+
T Consensus       375 ~~~~h~~~v~~l~~~~~  391 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKT  391 (410)
T ss_dssp             EEECCSSCEEEEEECSS
T ss_pred             EEcCCCCcEEEEEEcCC
Confidence            87    34677777776

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-40  Score=275.33  Aligned_cols=229  Identities=19%  Similarity=0.378  Sum_probs=210.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .+.+....+.+|.++|++++|+| ++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             ccchhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeE
Confidence            34567789999999999999999 78899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCC----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          132 QIWDPSSG----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       132 ~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      ++|++.+.    +....+.+|.+.+.++.|++++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            99999875    3456678899999999999876 488999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEE
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVA  281 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~  281 (288)
                      +|+.|+.|++||++++.....+..   |...|.+++|+|++.+|++|+.||.|++||+++++.+..+      ..+.+++
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~  277 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTG---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcC---CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence            999999999999999998888877   7789999999999999999999999999999999888766      2578888


Q ss_pred             Eeec
Q 023018          282 YDLD  285 (288)
Q Consensus       282 ~~~d  285 (288)
                      |+|+
T Consensus       278 ~s~~  281 (340)
T 1got_B          278 FSKS  281 (340)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-41  Score=274.34  Aligned_cols=232  Identities=22%  Similarity=0.344  Sum_probs=208.0

Q ss_pred             CCCCCCeeEeecCCCCEEEEEEcCC---CCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEecCCCEEEEE
Q 023018           51 EQPDDSTHIFSGHSDEVYSVACSPT---DATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        51 ~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      +......+.+.+|.++|++++|+|.   ++.+|++|+.|++|+||++...+.  ...+.+|...|.+++|++++.+++++
T Consensus        19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            3334555677899999999999983   356899999999999999987654  44678999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      +.|++|++||+.+++.+..+..+...+.+++|+|++++|++++.+|.|++|++++++....+..+...+.+++|+|++++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVA  281 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~  281 (288)
                      |++|+.||.|++||+++++.+..+..   |..+|.+++|+|++.+|++|+.||.|++||+++++++..+.    .+.+++
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            99999999999999999998888876   77899999999999999999999999999999999988874    466778


Q ss_pred             Eeec
Q 023018          282 YDLD  285 (288)
Q Consensus       282 ~~~d  285 (288)
                      |+|+
T Consensus       256 ~sp~  259 (321)
T 3ow8_A          256 FCPD  259 (321)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8775

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-40  Score=270.71  Aligned_cols=228  Identities=22%  Similarity=0.320  Sum_probs=205.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+..+.+|..+|.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||+|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l  123 (304)
T 2ynn_A           45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence            456788899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcC--CCCEEEE
Q 023018          134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP--DGKTICT  208 (288)
Q Consensus       134 ~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p--~~~~l~~  208 (288)
                      ||+.++ .....+.+|...|.+++|+| ++..|++|+.|++|++||++++.+...+. .+...+..+.|+|  ++.+|++
T Consensus       124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred             EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence            999887 45567888999999999999 67899999999999999998877655554 4567899999987  6789999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEee
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDL  284 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~  284 (288)
                      |+.|+.|++||+++++.+..+.+   |...|.+++|+|++.+|++|+.||.|++||+.+++++..+.    .+.+++|.|
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EcCCCeEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999988887   78899999999999999999999999999999999999883    456677665


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       281 ~  281 (304)
T 2ynn_A          281 T  281 (304)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.8e-40  Score=271.84  Aligned_cols=232  Identities=19%  Similarity=0.373  Sum_probs=205.9

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE------------------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------------------------  101 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------  101 (288)
                      ...+....+.+|.++|++++|+| ++.+|++|+.||+|++||..+++...                              
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             cccEEEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence            34567889999999999999999 77899999999999999986654322                              


Q ss_pred             ------------------eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC--CC
Q 023018          102 ------------------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RG  161 (288)
Q Consensus       102 ------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~--~~  161 (288)
                                        .+..|...|.+++|+|++.+|++++.||+|++||+.+++.+..+.+|...|.+++|+|  ++
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence                              2335777899999999999999999999999999999999999999999999999988  46


Q ss_pred             CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEE
Q 023018          162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC  241 (288)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  241 (288)
                      ++|++|+.||.|++||+++++++..+..|...|++++|+|++.+|++|+.|+.|++||++++..+..+.... +...+.+
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-~~~~~~~  289 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-IIFGASS  289 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-CCSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-cccceeE
Confidence            899999999999999999999999999999999999999999999999999999999999887776665322 4457899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ++|+|++.+|++|+.|+.|++||+.+++.+..+    ..+.+++|+|+
T Consensus       290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence            999999999999999999999999999998887    45677888776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.8e-40  Score=268.16  Aligned_cols=221  Identities=26%  Similarity=0.453  Sum_probs=207.0

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      .......+.+|..+|++++|+| ++.+|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CceeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            3456778899999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      +||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      |.|++||+++++.+..+...  +...+..++|+|++++|++++.||.|++||+.+++++..+..
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred             CcEEEEECCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence            99999999999887776543  567899999999999999999999999999999998887743

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=274.66  Aligned_cols=222  Identities=16%  Similarity=0.205  Sum_probs=192.9

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe----eccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE----IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ....|...|.+++|+| ++ .|++|+.||+|+|||+.+++.+..    +.+|...|++++|+|++++|++|+.||+|++|
T Consensus        77 ~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           77 AGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3345677899999999 54 677999999999999998765443    44799999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcC-CCCEEEEEe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTP-DGKTICTGS  210 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p-~~~~l~~~~  210 (288)
                      |+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||++++++...+.  .+...+.+++|+| ++++|++|+
T Consensus       155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            9999999999999999999999999874 78999999999999999998887764  3556789999999 567889999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      .||.|++||+++++.+..+.+   |...|++++|+|++ .+|++|+.||+|++||+.+++++...   ..+.+++|+|+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~---h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~  310 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL  310 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEEC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred             cCCcEEEEECCCCcEEEEEcC---CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence            999999999999999998887   78899999999987 57899999999999999999887654   45788888875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-39  Score=267.22  Aligned_cols=230  Identities=23%  Similarity=0.385  Sum_probs=208.2

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEEeCC
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASGGLD  128 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  128 (288)
                      ....+..+..|...|.+++|+| ++.+|++|+.|+.|++|++.+.    .....+.+|...|.++.|++++ .+++++.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d  163 (340)
T 1got_B           86 TTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGD  163 (340)
T ss_dssp             TCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETT
T ss_pred             CCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECC
Confidence            3556778889999999999999 7889999999999999999865    4566778899999999999877 48899999


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      +.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||.|++||++++.++..+.+|...|++++|+|++++|++
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  243 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      |+.||.|++||+++++.+..+.. ..+...|.+++|+|++.+|++|+.||.|++||+.+++.+..+    ..+.+++|+|
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~  322 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC
Confidence            99999999999999887776653 224457999999999999999999999999999999998887    4567788877


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       323 d  323 (340)
T 1got_B          323 D  323 (340)
T ss_dssp             T
T ss_pred             C
Confidence            6

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=269.71  Aligned_cols=208  Identities=21%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDP  136 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  136 (288)
                      ..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++.+..+.+|...|++++|+|++. +|++|+.||+|++||+
T Consensus       121 ~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          121 FCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            34568999999999999 888999999999999999999999999999999999999999885 7899999999999999


Q ss_pred             CCCceeEEec--cCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEEEeCC
Q 023018          137 SSGNLKCTLE--GPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDD  212 (288)
Q Consensus       137 ~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~d  212 (288)
                      ++++....+.  .+...+.+++|+| ++++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence            9998887764  3455799999999 56689999999999999999999999999999999999999987 579999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcE
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      +.|+|||+.+++... +.+   |...|++++|+|++. +|++++.||+|++|++.+...
T Consensus       280 ~~i~vwd~~~~~~~~-~~~---H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          280 CSLAVLDSSLSELFR-SQA---HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SCEEEECTTCCEEEE-ECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CeEEEEECCCCcEEE-EcC---CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            999999999887554 444   888999999999875 677899999999999987643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.3e-39  Score=266.03  Aligned_cols=228  Identities=21%  Similarity=0.318  Sum_probs=197.0

Q ss_pred             CCCCeeEeecCCCCEEEEEE-----cCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCCC
Q 023018           53 PDDSTHIFSGHSDEVYSVAC-----SPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDGQ  120 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~-----~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~  120 (288)
                      .......+.+|.+.|++++|     ++.++.+|++|+.|++|++|++.+.       .....+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            34567789999999999999     6657889999999999999999753       45667889999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee---ccCCCeEEE
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS---GHGSSVTCG  197 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~  197 (288)
                      +|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ......   .|...|.++
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeee
Confidence            9999999999999999999999999999999999999999999999999999999999743 333333   688899999


Q ss_pred             EEcCCC----------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-
Q 023018          198 DFTPDG----------KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-  266 (288)
Q Consensus       198 ~~~p~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-  266 (288)
                      +|+|++          .+|++++.||.|++||. ..+....+..   |...|.+++|+|++++|++|+.||.|++||+. 
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999986          78999999999999994 4566666665   77899999999999999999999999999994 


Q ss_pred             CCcEEEEe---cceEEEEEeec
Q 023018          267 TGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       267 t~~~~~~~---~~~~~~~~~~d  285 (288)
                      .+.+...+   ..+.+++|+|+
T Consensus       245 ~~~~~~~~~~~~~v~~v~~sp~  266 (343)
T 2xzm_R          245 LTYPQREFDAGSTINQIAFNPK  266 (343)
T ss_dssp             CSSCSEEEECSSCEEEEEECSS
T ss_pred             CcccceeecCCCcEEEEEECCC
Confidence            34333333   45788888886

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=264.14  Aligned_cols=208  Identities=25%  Similarity=0.461  Sum_probs=185.2

Q ss_pred             CCeeEeecCCC-CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE---eeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           55 DSTHIFSGHSD-EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        55 ~~~~~~~~h~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ..+..+.+|.. .|++++|+| ++.+||+|+.|++|+||++.++....   ...+|...|.+++|+|++++|++|+.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            46778899988 999999999 78899999999999999999876432   23579999999999999999999999999


Q ss_pred             EEEEeCCCCc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCeEEEEEcCCCCE
Q 023018          131 VQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       131 i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      |++|++..+.  .+..+.+|...|.+++|+|++++|++|+.|+.|++||++.+   ..+..+..|...|.+++|+|++.+
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            9999988764  56778899999999999999999999999999999999875   346677889999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          206 ICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      |++++.|+.|++||++++..  ...+.+   |...|.+++|+|++++|++++.||.|++|++.
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEG---HESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecC---CCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            99999999999999987753  345555   78899999999999999999999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5e-38  Score=257.67  Aligned_cols=224  Identities=20%  Similarity=0.337  Sum_probs=202.9

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .++..+.+|...|++++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++|
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            45778999999999999999 88899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCC------CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPR------GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      |+. ++.+..+.+|...+.++.|+|.      +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++
T Consensus       135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s  213 (319)
T 3frx_A          135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS  213 (319)
T ss_dssp             ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred             ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence            986 4567778889999999999985      448999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec------------c
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF------------Q  276 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~------------~  276 (288)
                      ++.||.|++||+.+++.+..+..    ...|.+++|+|++.+|++++.+ .+++|++.++..+..+.            .
T Consensus       214 ~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (319)
T 3frx_A          214 AGKDGEIMLWNLAAKKAMYTLSA----QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPH  288 (319)
T ss_dssp             EETTCEEEEEETTTTEEEEEEEC----CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred             EeCCCeEEEEECCCCcEEEEecC----CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcc
Confidence            99999999999999998888873    4679999999999999888754 59999999888776652            3


Q ss_pred             eEEEEEeec
Q 023018          277 YTCVAYDLD  285 (288)
Q Consensus       277 ~~~~~~~~d  285 (288)
                      +.+++|+||
T Consensus       289 v~~~~~spd  297 (319)
T 3frx_A          289 AVSLAWSAD  297 (319)
T ss_dssp             EEEEEECTT
T ss_pred             eeEEEECCC
Confidence            567888886

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-38  Score=256.72  Aligned_cols=225  Identities=19%  Similarity=0.283  Sum_probs=191.5

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (288)
                      +..+.+|.+.|++++|+| ++.+||+|+.|++|+||++..  .+.+..+.+|..+|++++|++  ++++|++|+.||+|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            356789999999999999 788999999999999999974  367788999999999999986  388999999999999


Q ss_pred             EEeCCCCc--eeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCC----
Q 023018          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPD----  202 (288)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~----  202 (288)
                      +||+.+++  .+..+..|...|.+++|+|+  +.+|++++.||.|++||++++.  ....+.+|...|.+++|+|+    
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998874  55667789999999999997  8899999999999999998763  24567789999999999996    


Q ss_pred             ---------CCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCccccCeEEEEEcCCC---CEEEEEeCCCcEEEEEcC
Q 023018          203 ---------GKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADS---TLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       203 ---------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~  266 (288)
                               +++|++|+.|+.|++||++++.    ....+.+   |...|.+++|+|++   .+|++++.|+.|++||+.
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                     5799999999999999998765    4445555   78899999999984   899999999999999998


Q ss_pred             CCc---EEEEe------cceEEEEEeec
Q 023018          267 TGK---VCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       267 t~~---~~~~~------~~~~~~~~~~d  285 (288)
                      +++   ....+      ..+.+++|+|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~  265 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLS  265 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCC
Confidence            753   12222      34667777775

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-39  Score=273.68  Aligned_cols=229  Identities=24%  Similarity=0.433  Sum_probs=204.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      .....+.+.+|.++|++++|+| ++.+|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             eeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            4556788999999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCc-------eeEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEe-----eccCCCeEEEEE
Q 023018          133 IWDPSSGN-------LKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGDF  199 (288)
Q Consensus       133 i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~  199 (288)
                      +|++.+..       ....+.+|.+.+.++.|+|+ +..|++|+.|++|++||+++++.+..+     .+|...|.+++|
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred             EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence            99987532       34557789999999999996 457999999999999999999988777     578899999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-
Q 023018          200 TP-DGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ-  276 (288)
Q Consensus       200 ~p-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~-  276 (288)
                      +| ++.+|++|+.|+.|++||++ .+..+..+.+   |...|.+++|+|++.+|++|+.||.|++||+++++++..+.. 
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence            87 88999999999999999998 4566777776   788999999999999999999999999999999999887632 


Q ss_pred             ----------eEEEEEeec
Q 023018          277 ----------YTCVAYDLD  285 (288)
Q Consensus       277 ----------~~~~~~~~d  285 (288)
                                +.+++|+|+
T Consensus       291 ~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          291 PDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             CSSSCCSSCSCSEEEECSS
T ss_pred             ccccccccCceEEEEECCC
Confidence                      567888875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=261.08  Aligned_cols=209  Identities=23%  Similarity=0.398  Sum_probs=179.6

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEee-cc-ccCcEEEEEEecCCCEEEEEeCCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEI-QG-HKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      .+.++.+.+|.++|++++|+| +  +||+|+.|+.|++|++..+  .....+ .. |...|.+++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            346788999999999999998 4  9999999999999999874  445555 34 999999999999999999999999


Q ss_pred             eEEEEeCCC-------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc----ccEEEEeeccCCCeEEEE
Q 023018          130 LVQIWDPSS-------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       130 ~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~  198 (288)
                      +|++|++..       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++.    .+++..+.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999853       345677889999999999999999999999999999999953    256778889999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCC
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSG--ENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      |+|++.+|++++.|+.|++||..++  +.+..+.+   |...|.+++|+|+  +.+|++++.|+.|++|++.++
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            9999999999999999999998766  45666665   7889999999998  678999999999999999765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-37  Score=254.80  Aligned_cols=232  Identities=23%  Similarity=0.378  Sum_probs=205.0

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..+....+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|+
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  132 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  132 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             CcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            3456778899999999999999 788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEEEEeC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. .+..++..++|+|++++|++++.
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            99999999999999999999999999999999999999999999999998877664 45678999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc----eEEEEEeec
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ----YTCVAYDLD  285 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----~~~~~~~~d  285 (288)
                      ||.|++||+++++.+..+..+......+......+++.+|++|+.||.|++||+.+++++..+.+    +.+++|+|+
T Consensus       213 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  290 (312)
T 4ery_A          213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT  290 (312)
T ss_dssp             TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCc
Confidence            99999999999998888877543223333333446789999999999999999999999988854    456666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-37  Score=258.95  Aligned_cols=206  Identities=23%  Similarity=0.423  Sum_probs=190.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ  132 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  132 (288)
                      .....+.+|...|.+++|+| ++..|++++.||+|++||+.+++.+..+.+|...|.+++|+|  ++.+|++|+.||.|+
T Consensus       145 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~  223 (354)
T 2pbi_B          145 AKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM  223 (354)
T ss_dssp             GGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred             ccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence            45567889999999999999 778899999999999999999999999999999999999987  467999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCCCCEEEEEe
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +||+++++.+..+..|...|.+++|+|++.+|++|+.|++|++||++.++.+..+..+  ...+.+++|+|++.+|++|+
T Consensus       224 ~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence            9999999999999999999999999999999999999999999999998877766543  34789999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .|+.|++||+.++..+..+.+   |...|++++|+|++.+|++|+.||.|++|+
T Consensus       304 ~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVLKGSRVSILFG---HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETTTCSEEEEECC---CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEECCCCceEEEEEC---CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999998888876   788999999999999999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-37  Score=261.31  Aligned_cols=215  Identities=30%  Similarity=0.442  Sum_probs=190.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....
T Consensus       124 ~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          124 LYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             CBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            3599999999 888999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             eccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEe-------eccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          145 LEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      +. +...+.+++|+| ++++|++|+.||.|++||++++..+..+       .+|...|++++|+|++++|++|+.|+.|+
T Consensus       203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            76 456799999999 8999999999999999999998877766       56889999999999999999999999999


Q ss_pred             EEeCCCCc------------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc----eEEE
Q 023018          217 VWNPKSGE------------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ----YTCV  280 (288)
Q Consensus       217 i~d~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----~~~~  280 (288)
                      +||+++..            ....+.+   |...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+    +.++
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIG---HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEC---------------CEEEEEEC---CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEECCCCCCcccccCCCCCcceEEEec---ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            99997643            2334444   778899999999999999999999999999999999988744    5566


Q ss_pred             EEee
Q 023018          281 AYDL  284 (288)
Q Consensus       281 ~~~~  284 (288)
                      +|++
T Consensus       359 ~~~~  362 (393)
T 1erj_A          359 AVAN  362 (393)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            6654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.2e-38  Score=281.31  Aligned_cols=227  Identities=25%  Similarity=0.433  Sum_probs=203.7

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-----eeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-----DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ....+++|.+.|++++|+|.++.+|++|+.||+|++|++.+.     .....+.+|...|.+++|+|++++|++|+.||+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            345789999999999999977789999999999999998753     345678899999999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe---eccCCCeEEEEEcCCC--CE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDG--KT  205 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~p~~--~~  205 (288)
                      |+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|.+++|+|++  ..
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            999999999999999999999999999999999999999999999998655433322   3688899999999976  68


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAY  282 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~  282 (288)
                      |++++.|+.|++||+++++....+.+   |...|++++|+|++++|++|+.||.|++||+.+++++..+   ..+.+++|
T Consensus       534 l~s~s~d~~v~vwd~~~~~~~~~~~~---h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  610 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCKLRSTLAG---HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF  610 (694)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEE
Confidence            99999999999999999988888877   7889999999999999999999999999999999988876   45778888


Q ss_pred             eec
Q 023018          283 DLD  285 (288)
Q Consensus       283 ~~d  285 (288)
                      +|+
T Consensus       611 sp~  613 (694)
T 3dm0_A          611 SPN  613 (694)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.3e-38  Score=261.89  Aligned_cols=207  Identities=19%  Similarity=0.250  Sum_probs=185.7

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDP  136 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~  136 (288)
                      ....+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|++. ++++++.||.|++||+
T Consensus       133 ~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          133 FAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             EEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred             eccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence            45568999999999999 888999999999999999999999999999999999999999875 7899999999999999


Q ss_pred             CCCceeEEec--cCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC-CEEEEEeCC
Q 023018          137 SSGNLKCTLE--GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDD  212 (288)
Q Consensus       137 ~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~-~~l~~~~~d  212 (288)
                      ++++....+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence            9988766543  46678999999996 5689999999999999999999999999999999999999987 578999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCc
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +.|+|||+++++.+..+.    |...|++++|+| ++.+|++++.||+|++|++.+..
T Consensus       292 ~~i~iwd~~~~~~~~~~~----H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDLS----HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SCEEEECTTSCEEEEECC----CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CEEEEEECCCCcEeEECC----CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            999999999988776553    888999999999 89999999999999999997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-38  Score=262.60  Aligned_cols=224  Identities=21%  Similarity=0.238  Sum_probs=190.6

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE----eeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS----EIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ......+|...|++++|+| ++.+ ++++.||+|+|||+.+++...    ...+|...|++++|+|++++|++|+.||.|
T Consensus        86 ~~~~~~~~~~~V~~~~~s~-d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v  163 (357)
T 4g56_B           86 LCTAGVQTEAGVTDVAWVS-EKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV  163 (357)
T ss_dssp             GCSEEEECSSCEEEEEEET-TTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred             EecccCCCCCCEEEEEEcC-CCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence            3455678999999999999 5554 467889999999998876443    334789999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCC-CCEEE
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPD-GKTIC  207 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~-~~~l~  207 (288)
                      ++||+.+++.+..+..|...|.+++|+|++. ++++++.||.|++||+++++++..+.  .+...+++++|+|+ +.+|+
T Consensus       164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            9999999999999999999999999999875 78999999999999999988766554  46678999999996 56889


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEe
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYD  283 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~  283 (288)
                      +|+.|+.|++||+++++.+..+..   |...|++++|+|++ ++|++|+.||.|+|||+.+++++..+   ..+.+++|+
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafs  320 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWS  320 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEEC
T ss_pred             EeecccceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEe
Confidence            999999999999999999888877   77899999999987 67899999999999999999998876   567888998


Q ss_pred             e
Q 023018          284 L  284 (288)
Q Consensus       284 ~  284 (288)
                      |
T Consensus       321 P  321 (357)
T 4g56_B          321 P  321 (357)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-37  Score=275.54  Aligned_cols=218  Identities=23%  Similarity=0.343  Sum_probs=193.9

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCC---
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLD---  128 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  128 (288)
                      ......+.+|...|++++|+| ++.+||+|+.||+|+|||+.++  .....+.+|..+|.+++|+|++++|++++.+   
T Consensus        49 ~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~  127 (611)
T 1nr0_A           49 LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  127 (611)
T ss_dssp             SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             cccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence            456788999999999999999 8899999999999999998754  3455778899999999999999999988865   


Q ss_pred             -CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          129 -GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       129 -g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                       +.|++||  .++....+.+|...|.+++|+|++. .|++|+.|++|++||.++++.+..+.+|...|++++|+|++++|
T Consensus       128 ~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l  205 (611)
T 1nr0_A          128 FGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  205 (611)
T ss_dssp             SEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE
Confidence             4788887  4556677889999999999999887 69999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCC----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++++.|+.|++||+.+++....+...    ..|...|.+++|+|++++|++++.|++|++||+.+++++..+
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            99999999999999999888777421    138889999999999999999999999999999998876544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-37  Score=256.31  Aligned_cols=215  Identities=21%  Similarity=0.319  Sum_probs=188.2

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEec--CCCEEEEEeCCC
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDG  129 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg  129 (288)
                      ....+.+|.++|++++|+| ++.+|++|+.||.|++|++.++    +....+.+|...|++++|+|  ++++|++++.||
T Consensus         3 ~~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CCCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            4567889999999999999 7889999999999999999876    46677788999999999999  589999999999


Q ss_pred             eEEEEeCCCC---------ceeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcccE---------------
Q 023018          130 LVQIWDPSSG---------NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAAY---------------  183 (288)
Q Consensus       130 ~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---------------  183 (288)
                      .|++||+.++         +....+..|...|.+++|+|+  +.+|++++.||.|++||+++++.               
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            9999999887         457778889999999999999  99999999999999999865431               


Q ss_pred             ---------------------------------------------EEEeeccCCCeEEEEEcCCC----CEEEEEeCCCe
Q 023018          184 ---------------------------------------------LNMFSGHGSSVTCGDFTPDG----KTICTGSDDAT  214 (288)
Q Consensus       184 ---------------------------------------------~~~~~~~~~~i~~~~~~p~~----~~l~~~~~dg~  214 (288)
                                                                   +..+.+|...|++++|+|++    ++|++++.||.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence                                                         34455788999999999998    89999999999


Q ss_pred             EEEEeCCCC----------------------------------------------ceeEEEcCCCccccCeEEEEEcCCC
Q 023018          215 LRVWNPKSG----------------------------------------------ENIHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       215 i~i~d~~~~----------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                      |++||++++                                              +.+..+..   |...|++++|+|++
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD---HNGEVWSVSWNLTG  318 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECT---TSSCEEEEEECSSS
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec---ccccEEEEEEcCCC
Confidence            999999864                                              33344444   77899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          249 TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|++++.||.|++|++.+++.+..+
T Consensus       319 ~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             CEEEEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999999998776654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=253.32  Aligned_cols=224  Identities=26%  Similarity=0.431  Sum_probs=183.7

Q ss_pred             eeEe-ec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-------CeeeEeeccccCcEEEEEEecCCCEEEEEeC
Q 023018           57 THIF-SG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        57 ~~~~-~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      ...+ .+ |..+|++++|+| ++.+|++|+.|++|+||++..       .+.+..+.+|...|.+++|+|++++|++|+.
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             EEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445 34 999999999999 788999999999999999853       3566778899999999999999999999999


Q ss_pred             CCeEEEEeCCCC----ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcC
Q 023018          128 DGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       128 dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p  201 (288)
                      |++|++||+...    +.+..+..|...|.+++|+|++.+|++++.|++|++||++++  +++..+.+|...|.+++|+|
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC
Confidence            999999999432    456678889999999999999999999999999999998765  67888999999999999999


Q ss_pred             C--CCEEEEEeCCCeEEEEeCCCC--------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--
Q 023018          202 D--GKTICTGSDDATLRVWNPKSG--------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--  269 (288)
Q Consensus       202 ~--~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~--  269 (288)
                      +  +.+|++++.|+.|++||+..+        .....+..  .|...|.+++|++++ +|++++.||.|++|++.+++  
T Consensus       208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~  284 (330)
T 2hes_X          208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD--VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK  284 (330)
T ss_dssp             SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS--CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc--ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence            8  778999999999999998654        22222222  277889999999765 78999999999999999884  


Q ss_pred             EEEEe-----c-ceEEEEEee
Q 023018          270 VCCLN-----F-QYTCVAYDL  284 (288)
Q Consensus       270 ~~~~~-----~-~~~~~~~~~  284 (288)
                      ++...     . .+.+++|+|
T Consensus       285 ~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          285 VFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEEESCTTTTSCEEEEEEC-
T ss_pred             EEeccccccccceEEEEEEec
Confidence            33332     1 577888877

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=251.54  Aligned_cols=227  Identities=19%  Similarity=0.303  Sum_probs=203.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ......+.+|.++|++++|+| ++.+|++|+.||.|++|++.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            344456899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCccc-----------EEEEeeccCC--CeE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAA-----------YLNMFSGHGS--SVT  195 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~i~  195 (288)
                      ||+.+++.+..+. +...+.+++|+|+++++++++.+     |.|++||+....           .+..+..|..  .+.
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9999999988888 77889999999999999999998     999999987653           3344445555  899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +++|+|++++|++++.+|.|++||+++ +..+..+..   |...|.+++|+|++.+|++++.||.|++||+.+++.+..+
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            999999999999999999999999998 677777776   7789999999999999999999999999999999998877


Q ss_pred             ---cceEEEEEeec
Q 023018          275 ---FQYTCVAYDLD  285 (288)
Q Consensus       275 ---~~~~~~~~~~d  285 (288)
                         ..+..++|+|+
T Consensus       257 ~~~~~~~~~~~~~~  270 (369)
T 3zwl_B          257 ETDCPLNTAVITPL  270 (369)
T ss_dssp             ECSSCEEEEEECSS
T ss_pred             cCCCCceeEEecCC
Confidence               55677777765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-38  Score=257.53  Aligned_cols=227  Identities=19%  Similarity=0.293  Sum_probs=184.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQI  133 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i  133 (288)
                      ..+.+|.++|++++|+| ++.+||+|+.|++|+|||+.++.  .+..+.+|..+|++++|++  ++++|++|+.|++|++
T Consensus         7 ~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            46679999999999999 78899999999999999998875  4677889999999999975  4889999999999999


Q ss_pred             EeCCCCc--eeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCccc---EEEEeeccCCCeEEEEEcCC----
Q 023018          134 WDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPD----  202 (288)
Q Consensus       134 ~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~p~----  202 (288)
                      ||+.+++  ....+.+|...|.+++|+|+  +.+|++|+.||.|++|+++.+.   ....+.+|...+.+++|+|+    
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            9998873  56677889999999999997  7899999999999999998753   23556678899999999997    


Q ss_pred             -------------CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 023018          203 -------------GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHMVNI  265 (288)
Q Consensus       203 -------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~  265 (288)
                                   +.+|++|+.|+.|++||++.......+.....|...|.+++|+|++    .+|++++.||+|++|++
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence                         4689999999999999997653222222333388899999999986    88999999999999999


Q ss_pred             CCC-------cEEEEe-cceEEEEEeec
Q 023018          266 TTG-------KVCCLN-FQYTCVAYDLD  285 (288)
Q Consensus       266 ~t~-------~~~~~~-~~~~~~~~~~d  285 (288)
                      .++       +.+... ..+.+++|+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCC
Confidence            862       223322 56778888876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=252.72  Aligned_cols=223  Identities=24%  Similarity=0.425  Sum_probs=191.4

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      ..+|...|++++|+| ++.+|++|+.|+.+++|++..+  +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus        57 ~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             CSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             ccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            368999999999999 7889999999999999999876  4567888999999999999999999999999999999998


Q ss_pred             CCc---eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          138 SGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       138 ~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ++.   .+..+..|...|.+++|+|++++|++++.|+.|++|+++++.  +...+.+|...|++++|+|++++|++++.|
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            764   355677899999999999999999999999999999998764  457788999999999999999999999999


Q ss_pred             CeEEEEeCCCC---------------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--------
Q 023018          213 ATLRVWNPKSG---------------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--------  269 (288)
Q Consensus       213 g~i~i~d~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~--------  269 (288)
                      +.|++|+....               ..+..+.+.  |...|.+++|+|++..|++++.|+.|++|++.++.        
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  293 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS  293 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence            99999996322               122233332  67889999999999999999999999999987653        


Q ss_pred             EEEEe-----cceEEEEEeec
Q 023018          270 VCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       270 ~~~~~-----~~~~~~~~~~d  285 (288)
                      .....     ..+.+++|+|+
T Consensus       294 ~~~~~~~~h~~~V~~v~~~p~  314 (345)
T 3fm0_A          294 LTAHLHQAHSQDVNCVAWNPK  314 (345)
T ss_dssp             EEEEETTSSSSCEEEEEECSS
T ss_pred             EEeeecccccCcEeEeEEeCC
Confidence            11111     45788999886

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.6e-37  Score=271.49  Aligned_cols=233  Identities=23%  Similarity=0.385  Sum_probs=197.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ......+.+|...|++++|+|++..+|++|+.|++|++|+..+++....+.+|...|++++|+|++++|++|+.|++|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~l  216 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  216 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEE
Confidence            34556788999999999999955567999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEec-------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE---------------------
Q 023018          134 WDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN---------------------  185 (288)
Q Consensus       134 ~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------  185 (288)
                      ||+.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+++++.+.                     
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            9999998888774       689999999999999999999999999999998765543                     


Q ss_pred             ----------------------EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-C----------
Q 023018          186 ----------------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-H----------  232 (288)
Q Consensus       186 ----------------------~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~----------  232 (288)
                                            .+.+|...|++++|+|++++|++++.|+.|++||+.++.....+.. +          
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence                                  3346888999999999999999999999999999987654322100 0          


Q ss_pred             ---------------------------------------------C-----------------------ccccCeEEEEE
Q 023018          233 ---------------------------------------------P-----------------------YHTEGLTCLTI  244 (288)
Q Consensus       233 ---------------------------------------------~-----------------------~~~~~v~~~~~  244 (288)
                                                                   .                       .+...+.+++|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                         0                       01234678999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcEE--EEe---cceEEEEEeecc
Q 023018          245 SADSTLALSGSKDGSVHMVNITTGKVC--CLN---FQYTCVAYDLDF  286 (288)
Q Consensus       245 ~~~~~~l~~~~~dg~i~iwd~~t~~~~--~~~---~~~~~~~~~~df  286 (288)
                      +|+|++|++|+.||.|++|++.+++..  ...   ..+.+++|+|+-
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg  503 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG  503 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC
Confidence            999999999999999999999887542  222   568889998873

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-36  Score=251.18  Aligned_cols=223  Identities=21%  Similarity=0.297  Sum_probs=190.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .+...+.+|...|++++|+| ++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW  145 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred             cccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence            45678899999999999999 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEec---cCCCCEEEEEEcCCC----------CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          135 DPSSGNLKCTLE---GPGGGVEWVSWHPRG----------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       135 d~~~~~~~~~~~---~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      |+.... .....   .|...+.+++|+|.+          .+|++++.||.|++||. ..+....+..|...|.+++|+|
T Consensus       146 d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          146 NILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP  223 (343)
T ss_dssp             ESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT
T ss_pred             eccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC
Confidence            998443 33332   577889999999976          79999999999999994 5667778889999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--Ee----
Q 023018          202 DGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC--LN----  274 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~--~~----  274 (288)
                      ++++|++|+.||.|++||+.. ......+.    +...|.+++|+|++.+|+++ .|+.|++|++.+++...  .+    
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~  298 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDILNLTYPQREFD----AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP  298 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESSCCSSCSEEEE----CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcccceeec----CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc
Confidence            999999999999999999943 44444443    34569999999999887655 58889999998876543  22    


Q ss_pred             -----------cceEEEEEeec
Q 023018          275 -----------FQYTCVAYDLD  285 (288)
Q Consensus       275 -----------~~~~~~~~~~d  285 (288)
                                 ..+.+++|+|+
T Consensus       299 ~~~~~~~~~~~~~v~~~~~sp~  320 (343)
T 2xzm_R          299 ITKAEGQKGKNPQCTSLAWNAL  320 (343)
T ss_dssp             GGGBTTBCCSCCCEEEEEECSS
T ss_pred             chhhhhhcCCCCceEEEEECCC
Confidence                       23577888876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-37  Score=255.24  Aligned_cols=227  Identities=19%  Similarity=0.297  Sum_probs=196.2

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeeeEeeccccCcEEEEEEecC--CCEEEEEeCCCe
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGL  130 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~  130 (288)
                      +++..+.+|.++|++++|+| ++.+||+|+.||.|++|++.  +.+.+..+.+|...|++++|+++  +++|++++.||.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            45678999999999999999 78899999999999999998  56677788899999999999976  899999999999


Q ss_pred             EEEEeCCCCc--eeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCccc--EEEEeeccCCCeEEEEEcC---
Q 023018          131 VQIWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTP---  201 (288)
Q Consensus       131 i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~p---  201 (288)
                      |++||+.+++  ....+..|...|.+++|+|+  +.+|++++.||.|++||++++.  ....+..|...|.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999987  67777889999999999998  9999999999999999998873  4456678999999999999   


Q ss_pred             ----------CCCEEEEEeCCCeEEEEeCCCCcee----EEEcCCCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 023018          202 ----------DGKTICTGSDDATLRVWNPKSGENI----HVIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVN  264 (288)
Q Consensus       202 ----------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd  264 (288)
                                ++.+|++++.||.|++||++++...    ..+..   |...|.+++|+|+   +.+|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec---ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999999999999876532    34444   7889999999999   89999999999999999


Q ss_pred             cCCCc---EEEEe------cceEEEEEeec
Q 023018          265 ITTGK---VCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       265 ~~t~~---~~~~~------~~~~~~~~~~d  285 (288)
                      +.+++   ....+      ..+.+++|+|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  267 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLS  267 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred             CCCCCccceeeeeccccCCCcEEEEEEcCC
Confidence            99874   22222      45677888776

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.8e-38  Score=261.96  Aligned_cols=216  Identities=23%  Similarity=0.428  Sum_probs=192.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee-----ccccCcEEEEEEec-CCCEEEEEeCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-----QGHKDSVSSLAFSM-DGQLLASGGLD  128 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~d  128 (288)
                      .....+.+|.+.|.+++|+|.++..|++|+.|++|++||+.+++.+..+     .+|...|.+++|++ ++.+|++|+.|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence            3456788999999999999976778999999999999999999888776     57899999999987 78899999999


Q ss_pred             CeEEEEeCC-CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-------CCeEEEEEc
Q 023018          129 GLVQIWDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-------SSVTCGDFT  200 (288)
Q Consensus       129 g~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~  200 (288)
                      |+|++||++ .++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+++++.+..+..+.       ..+++++|+
T Consensus       228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence            999999998 457788889999999999999999999999999999999999998888776433       248999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      |++++|++|+.||.|++||+.+++.+..+... ..|...|.+++|+|++.+|++|+.||.|++|++..++.
T Consensus       308 ~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            99999999999999999999988887777322 34888999999999999999999999999999987653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.1e-36  Score=247.63  Aligned_cols=228  Identities=25%  Similarity=0.413  Sum_probs=203.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----eeEeeccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----WASEIQGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ....+|+||.+.|++|+|+|+++.+||+|+.||+|+|||+.+.+     +...+.+|...|.+++|+|++++|++++.|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            44567999999999999999668899999999999999997643     5667889999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-EEEeeccCCCeEEEEEcCCC--CEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDG--KTI  206 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~p~~--~~l  206 (288)
                      .|++|+............+...+..+.+++.+.+|++++.|+.+++||+..... ......|...+..++|++++  .++
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence            999999999988888888888999999999999999999999999999976543 34456788999999999854  578


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEe
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYD  283 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~  283 (288)
                      ++++.|+.|++||+++++.+..+..   |..+|++++|+|++++|++|+.||.|++||+++++++..+   ..+.++.|+
T Consensus       189 ~s~~~d~~i~i~d~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  265 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCKLKTNHIG---HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS  265 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCceeeEecC---CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecC
Confidence            8999999999999999998888876   7889999999999999999999999999999999998877   456777777


Q ss_pred             ec
Q 023018          284 LD  285 (288)
Q Consensus       284 ~d  285 (288)
                      |+
T Consensus       266 ~~  267 (340)
T 4aow_A          266 PN  267 (340)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-36  Score=254.86  Aligned_cols=205  Identities=28%  Similarity=0.483  Sum_probs=181.0

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC------------------cEEEEEEecCCCEE
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD------------------SVSSLAFSMDGQLL  122 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~l  122 (288)
                      .+|.+.|++++|+| ++.+||+|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|++++|
T Consensus        61 ~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           61 LDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             EECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             cCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            36999999999999 788998876 68999999999988877765432                  48999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-
Q 023018          123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-  201 (288)
Q Consensus       123 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-  201 (288)
                      ++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+++++....+. +...+.+++|+| 
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  217 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPG  217 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECST
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999998877776 567899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCC----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      ++++|++|+.||.|++||++++..+..+...    ..|...|.+++|+|++.+|++|+.||.|++||++++
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            8999999999999999999998877766321    237889999999999999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-38  Score=266.53  Aligned_cols=223  Identities=11%  Similarity=0.132  Sum_probs=188.2

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ..+..|.++|++++|+| ++.+||+|+.||.|++|++.++  +.+..+.+|...|++++|+|++++|++++.||.|++||
T Consensus         5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            44566788999999999 8889999999999999999988  77888899999999999999999999999999999999


Q ss_pred             CCCCc---eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---EEEEeec-cCCCeEEEEEcCCCCEEEE
Q 023018          136 PSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSG-HGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       136 ~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~~~~~p~~~~l~~  208 (288)
                      +.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|++++|+|++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~  163 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA  163 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence            99877   666777899999999999999999999999999999999876   3677777 9999999999999999999


Q ss_pred             EeCCCeEEEEeCCC------------------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          209 GSDDATLRVWNPKS------------------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       209 ~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      ++.|+.|++||+..                  ++.+..+    .|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            99999999999853                  2233333    3888999999999999999999999999999999987


Q ss_pred             ----EEEe----cceEEEEEeec
Q 023018          271 ----CCLN----FQYTCVAYDLD  285 (288)
Q Consensus       271 ----~~~~----~~~~~~~~~~d  285 (288)
                          +..+    ..+.+++|+|+
T Consensus       240 ~~~~~~~~~~~~~~v~~~~~s~~  262 (377)
T 3dwl_C          240 PPRALITVKLSQLPLRSLLWANE  262 (377)
T ss_dssp             CEEECCCEECSSSCEEEEEEEET
T ss_pred             cceeeEeecCCCCceEEEEEcCC
Confidence                4444    45788888876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-37  Score=266.19  Aligned_cols=218  Identities=16%  Similarity=0.162  Sum_probs=186.4

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEeeccccCcEEEEEEec-CCCEEEEEeCCCeEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQ  132 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  132 (288)
                      ......+|...|+||+|+|.++.+||+|+.||.|+|||+.+++.  ...+.+|.+.|++++|+| ++.+|++|+.||+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34566789999999999998888999999999999999987654  344568999999999998 678999999999999


Q ss_pred             EEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-EEEEE
Q 023018          133 IWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG  209 (288)
Q Consensus       133 i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~  209 (288)
                      +||+.++........  +...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|++|
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEe
Confidence            999987654433332  33457889999999999999999999999986 456778889999999999999876 78899


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.|+.|++||++++.....+.....|...|++++|+|++.+|++++.||.|++||+.++++...+
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            99999999999987665555444448889999999999999999999999999999999877765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.6e-36  Score=245.05  Aligned_cols=213  Identities=19%  Similarity=0.282  Sum_probs=182.5

Q ss_pred             CCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecC--CCEEEEEeCCC
Q 023018           55 DSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLDG  129 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg  129 (288)
                      +.+..+.+|.++|++++|+|. ++.+|++|+.||+|++|++.+++  .+..+..|...|.+++|+|+  +.+|++++.||
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence            567889999999999999863 37899999999999999998764  55667789999999999997  88999999999


Q ss_pred             eEEEEeCCCCc--eeEEeccCCCCEEEEEEcCC-------------CCEEEEecCCCeEEEEECCccc----EEEEeecc
Q 023018          130 LVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPR-------------GHIVLAGSEDSTVWMWNADRAA----YLNMFSGH  190 (288)
Q Consensus       130 ~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~  190 (288)
                      .|++||++++.  ....+..|...|.+++|+|+             +++|++|+.|++|++||++++.    ....+.+|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            99999998763  24567789999999999996             5799999999999999998765    56778899


Q ss_pred             CCCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          191 GSSVTCGDFTPDG---KTICTGSDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       191 ~~~i~~~~~~p~~---~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      ...|++++|+|++   .+|++++.|+.|++||+.+..  ....+.....+...|.+++|+|++++|++++.||.|++|+.
T Consensus       204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            9999999999984   889999999999999987643  12222212236788999999999999999999999999998


Q ss_pred             CC
Q 023018          266 TT  267 (288)
Q Consensus       266 ~t  267 (288)
                      ..
T Consensus       284 ~~  285 (297)
T 2pm7_B          284 NL  285 (297)
T ss_dssp             CT
T ss_pred             CC
Confidence            73

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-36  Score=250.50  Aligned_cols=224  Identities=16%  Similarity=0.187  Sum_probs=198.1

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .+..|.++|++++|+| ++.+|++++.||.|++|++.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus         3 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             EEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             eecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            4567999999999999 78899999999999999999987  88889899999999999999999999999999999999


Q ss_pred             CCCceeEE--eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---E-EEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          137 SSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---L-NMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       137 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~-~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      .+++....  +..|...|.+++|+|++++|++++.+|.|++||++.+..   . .....|...|.+++|+|++++|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            88875444  356888999999999999999999999999999988752   2 33356789999999999999999999


Q ss_pred             CCCeEEEEeCC------------------CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          211 DDATLRVWNPK------------------SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       211 ~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .||.|++||++                  .++.+..+..   |...|.+++|+|++.+|++++.||.|++||+.+++++.
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            99999999954                  5666666664   77899999999999999999999999999999999998


Q ss_pred             Ee----cceEEEEEeecc
Q 023018          273 LN----FQYTCVAYDLDF  286 (288)
Q Consensus       273 ~~----~~~~~~~~~~df  286 (288)
                      .+    ..+.+++|+|+-
T Consensus       239 ~~~~~~~~v~~~~~~~~~  256 (372)
T 1k8k_C          239 TLASETLPLLAVTFITES  256 (372)
T ss_dssp             EEECSSCCEEEEEEEETT
T ss_pred             EEccCCCCeEEEEEecCC
Confidence            87    367888888763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-35  Score=241.01  Aligned_cols=218  Identities=17%  Similarity=0.267  Sum_probs=198.5

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      +|...|++++|+| ++.+|++++.||.|++|++.+++  ....+..|...|.+++|+|++++|++++.+|.|++||+.++
T Consensus        95 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~  173 (337)
T 1gxr_A           95 NRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             CTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            7999999999999 78899999999999999999876  56677789999999999999999999999999999999999


Q ss_pred             ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      +....+..|...+.+++|+|++++|++++.+|.|++||+++++.+..+. +...+.+++|+|++++|++++.++.|++||
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~  252 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            9999999999999999999999999999999999999999998887775 778899999999999999999999999999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      +.++... .+..   |...|.+++|+|++++|++++.||.|++|++.+++.+...   ..+.+++|+|+
T Consensus       253 ~~~~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~  317 (337)
T 1gxr_A          253 VNKPDKY-QLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD  317 (337)
T ss_dssp             TTSSCEE-EECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTT
T ss_pred             CCCCCeE-EEcC---CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCC
Confidence            9987654 3443   7889999999999999999999999999999999988655   56778888775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-36  Score=253.38  Aligned_cols=230  Identities=20%  Similarity=0.365  Sum_probs=200.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-------eeeEeeccccCcEEEEEEecCC-CEEEEEe
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASGG  126 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  126 (288)
                      .....+.+|.++|++++|+|.++.+|++|+.||.|++|++.++       +.+..+.+|...|.+++|+|++ .+|++++
T Consensus        72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            4566788999999999999977789999999999999999987       5678888999999999999998 6999999


Q ss_pred             CCCeEEEEeCCCCceeEEe--ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe-eccCCC-eEEEEEcCC
Q 023018          127 LDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSS-VTCGDFTPD  202 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~p~  202 (288)
                      .||.|++||+.+++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|... +.++.|+|+
T Consensus       152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred             CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence            9999999999999999998  789999999999999999999999999999999999998888 677765 899999999


Q ss_pred             CCEEEEE---eCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcE-EEEe--
Q 023018          203 GKTICTG---SDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKV-CCLN--  274 (288)
Q Consensus       203 ~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~-~~~~--  274 (288)
                      +.+|++|   +.++.|++||++++.. +......  +...+.+++|+|++.+|++ |+.||.|++|++.+++. +..+  
T Consensus       232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~  309 (402)
T 2aq5_A          232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM  309 (402)
T ss_dssp             TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred             CcEEEEeccCCCCceEEEEcCccccCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence            9999999   7899999999998764 3333211  5677999999999998864 55799999999999883 3332  


Q ss_pred             ----cceEEEEEeecc
Q 023018          275 ----FQYTCVAYDLDF  286 (288)
Q Consensus       275 ----~~~~~~~~~~df  286 (288)
                          ..+.+++|+|+-
T Consensus       310 ~~~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          310 FSSKESQRGMGYMPKR  325 (402)
T ss_dssp             ECCSSCCSEEEECCGG
T ss_pred             cccCCcccceEEeccc
Confidence                557888888874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=247.72  Aligned_cols=236  Identities=15%  Similarity=0.235  Sum_probs=195.9

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccC-Ceee-EeeccccCcEEEEEEecCCCEEEEE
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      ...+.+.+..+.+|.+.|++++|+|..  +.+|++|+.||.|++|++.+ +..+ ..+.+|...|++++|+|++++|+++
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            455677888999999999999999944  69999999999999999997 4444 6788899999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEEE--cCCCCEEEEecCCCeEEEEECCcccEEEEeeccC------------
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW--HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG------------  191 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------  191 (288)
                      +.||.|++||+.+++... +..|...|.+++|  +|++++|++++.||.|++||+++++++..+..+.            
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA  183 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence            999999999999988766 4568899999999  8899999999999999999999887666555332            


Q ss_pred             -----------------------------CCeEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC---ceeEEEcCCCc-
Q 023018          192 -----------------------------SSVTCGDFTPDGKT----ICTGSDDATLRVWNPKSG---ENIHVIRGHPY-  234 (288)
Q Consensus       192 -----------------------------~~i~~~~~~p~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~-  234 (288)
                                                   ..+.++.+.+....    +++++.||.|++||++..   .....+..+.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence                                         23444555444433    999999999999999877   45566665311 


Q ss_pred             --------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018          235 --------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       235 --------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                              +...|.+++|+|++++|++++.||.|++||+.+++++..+    ..+.+++|+|+-
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  327 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG  327 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence                    1227999999999999999999999999999999999887    457788888763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.7e-35  Score=260.85  Aligned_cols=224  Identities=33%  Similarity=0.553  Sum_probs=203.0

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      .......+.+|..+|.+++|+| ++.+|++++.||.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus       333 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          333 NGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  410 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             CCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence            3456678889999999999999 8889999999999999995 5677888899999999999999999999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      +|+. +++.+..+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            9995 56778888999999999999999999999999999999996 567888899999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      +.|++||. +++.+..+.+   |...|++++|+|++++|++++.||.|++||. +++++..+    ..+.+++|+||
T Consensus       489 ~~i~iw~~-~~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          489 KTVKLWNR-NGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             SEEEEEET-TSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             CEEEEEcC-CCCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            99999995 6778888877   7889999999999999999999999999995 67888877    45677888876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-35  Score=268.06  Aligned_cols=214  Identities=21%  Similarity=0.364  Sum_probs=192.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .....+.+|...|++++|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus       421 ~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          421 VAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             cccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            45678899999999999999 88899999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceeEEe---ccCCCCEEEEEEcCCC--CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          135 DPSSGNLKCTL---EGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       135 d~~~~~~~~~~---~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      |+.........   .+|...|.+++|+|++  ..|++++.|++|++||+++++....+.+|...|++++|+|++++|++|
T Consensus       500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            98765433332   3577889999999976  589999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.||.|++||+++++.+..+.    +...+.+++|+|++.+|++++ ++.|++||+.+++++..+
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             ETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence            999999999999998877665    456799999999998887765 566999999999988765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-35  Score=242.94  Aligned_cols=222  Identities=20%  Similarity=0.345  Sum_probs=197.5

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee---Eeec--cccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA---SEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ....+|..+|++++|+| ++.+|++++ ||.|++|++.++...   ..+.  .|...|.+++|+|++++|++++.+|.|+
T Consensus        45 ~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             ceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            34458999999999999 788898988 999999999876432   2332  6889999999999999999999999999


Q ss_pred             EEeCCCCc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +||+.+++  ....+..|...+.+++|+|+++++++++.+|.|++||+++++.+..+..|...+.+++|+|++++|++++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe
Confidence            99999887  5667778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      .||.|++||+++++.+..+.    +...+.+++|+|++.+|++++.+|.|++|++.+++.....   ..+.+++|+|+
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~  276 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred             cCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCC
Confidence            99999999999998887775    5678999999999999999999999999999998876554   55778888765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.3e-36  Score=272.76  Aligned_cols=229  Identities=21%  Similarity=0.307  Sum_probs=212.0

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      -...+.+.+|.+.|++++|+| ++.+||+|+.+|.|+||++.+++.+..+..|..+|++++|+|++++|++++.||.|++
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v   81 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             cccceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            456789999999999999999 8889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-cEEEEeeccCCCeEEEEEcC-CCCEEEEEeC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSD  211 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~  211 (288)
                      |++.+++.+..+..|.+.|.+++|+|++++|++++.||.|++|+++++ .....+..|..+|.+++|+| ++..|++++.
T Consensus        82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999887 67788888999999999999 8899999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ||.|++||+.++.....+..+  +...+.+++|+|  ++.+|++++.||.|++||+.+++++..+    ..+.+++|+|+
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            999999999988877777653  457899999999  9999999999999999999999988877    45778888876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-35  Score=249.68  Aligned_cols=216  Identities=18%  Similarity=0.211  Sum_probs=190.3

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEec-CCCEEEEEeCCC
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSM-DGQLLASGGLDG  129 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg  129 (288)
                      +......+.+|...|++++|+|++..+|++|+.||.|++|++.+++....+.  +|...|.+++|+| ++.+|++++.||
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            3455778899999999999999444899999999999999999887776665  6999999999999 678999999999


Q ss_pred             eEEEEeCCCCceeEEeccC---CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-E
Q 023018          130 LVQIWDPSSGNLKCTLEGP---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-T  205 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~  205 (288)
                      .|++||+.. .....+..+   ...|.+++|+|++++|++++.||.|++||+ +++.+..+..|...|.+++|+|+++ +
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999986 444555443   378999999999999999999999999999 5778889999999999999999998 9


Q ss_pred             EEEEeCCCeEEEEeCCC----CceeEEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          206 ICTGSDDATLRVWNPKS----GENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |++++.|+.|++||+++    +..+..+.    |...|.+++|+| ++.+|++++.||.|++||+++++.+..+
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEMP----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEEE----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEec----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence            99999999999999987    55566553    788999999999 9999999999999999999998776554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.8e-36  Score=255.13  Aligned_cols=226  Identities=19%  Similarity=0.346  Sum_probs=196.6

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----------CeeeEeeccccCcEEEEEEecCCC-EEEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----------GDWASEIQGHKDSVSSLAFSMDGQ-LLASG  125 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  125 (288)
                      .....+|.+.|++++|+|+++.+||+++.+|.|++|++.+          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            4566789999999999996578999999999999999987          577788889999999999999988 99999


Q ss_pred             eCCCeEEEEeCCCCce-------eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcc---cEEEEeeccCCCe
Q 023018          126 GLDGLVQIWDPSSGNL-------KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSV  194 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i  194 (288)
                      +.||.|++|++..+..       ...+..|...|.+++|+| ++.+|++++.+|.|++||++++   +.+..+..|...|
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987422       455678889999999999 7789999999999999999987   5777788899999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC----
Q 023018          195 TCGDFTPDGK-TICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITT----  267 (288)
Q Consensus       195 ~~~~~~p~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t----  267 (288)
                      ++++|+|++. +|++|+.||.|++||+++ +..+..+..   |...|.+++|+|++ .+|++++.||.|++||+.+    
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            9999999887 688999999999999997 456777776   77899999999988 5789999999999999987    


Q ss_pred             ----------CcEEEEe----cceEEEEEeec
Q 023018          268 ----------GKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       268 ----------~~~~~~~----~~~~~~~~~~d  285 (288)
                                .+++...    ..+.+++|+|+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  389 (430)
T 2xyi_A          358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  389 (430)
T ss_dssp             CCHHHHHHCCTTEEEECCCCSSCEEEEEECSS
T ss_pred             cCccccccCCcceEEEcCCCCCCceEEEECCC
Confidence                      3556555    34778888776

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-35  Score=260.68  Aligned_cols=205  Identities=34%  Similarity=0.583  Sum_probs=189.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ...+.+..+.+|..+|++++|+| ++.+|++++.|+.|++|+. +++.+..+.+|...|++++|+|++++|++++.|+.|
T Consensus       373 ~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          373 RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence            34567788899999999999999 7889999999999999995 567788889999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ++|+. +++.+..+..|...|.+++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|++++.
T Consensus       451 ~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          451 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             EEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence            99996 56778888899999999999999999999999999999995 67889999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      ||.|++||. +++.+..+.+   |...|++++|+|++++|++++.||.|++||
T Consensus       529 dg~v~lwd~-~~~~~~~~~~---h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          529 DKTVKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSEEEEECT-TSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCEEEEEeC-CCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999996 6788888877   788999999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-35  Score=252.25  Aligned_cols=229  Identities=19%  Similarity=0.270  Sum_probs=193.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ......+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            445566679999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEecc---CCCCEEEE---------------------EEcCCCCEEEEecCCCeEEEEECCcccEEEEee-
Q 023018          134 WDPSSGNLKCTLEG---PGGGVEWV---------------------SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-  188 (288)
Q Consensus       134 ~d~~~~~~~~~~~~---~~~~i~~~---------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  188 (288)
                      ||+.+++.+..+..   +...+.++                     +|+|++++|++++.||.|++||+++++.+..+. 
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence            99999998888864   33344444                     457889999999999999999999988776665 


Q ss_pred             ccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          189 GHGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       189 ~~~~~i~~~~~~p~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .|...|++++|+|++. +|++|+.||.|++||+++++. +..+..+  +...+.++.+ +++.+|++++.||.|++|++.
T Consensus       288 ~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--EGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--TTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--CCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            4788999999999998 999999999999999998754 6666654  5667888855 578899999999999999998


Q ss_pred             CCcE----------EEEe---cceEEEEEeecc
Q 023018          267 TGKV----------CCLN---FQYTCVAYDLDF  286 (288)
Q Consensus       267 t~~~----------~~~~---~~~~~~~~~~df  286 (288)
                      +...          ....   ..+..++|+|+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  397 (420)
T 3vl1_A          365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDD  397 (420)
T ss_dssp             CTTCCSCEECTTSCEEECCSSCCCCEEEEECCS
T ss_pred             CCCCCccceeccCccEEccCCcceEEEEEccCC
Confidence            7321          1111   457788888874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-35  Score=247.96  Aligned_cols=220  Identities=20%  Similarity=0.216  Sum_probs=195.2

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCC----C---cEEEEEeCCCeEEEEEccCCee-----eEeeccc-----cCcEEEEEEe
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTD----A---TLVATGGGDDKGFFWRINQGDW-----ASEIQGH-----KDSVSSLAFS  116 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~----~---~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~i~~~~~~  116 (288)
                      ......+.+|..+|++++|+| +    +   .+|++++.||.|++|++.+++.     ...+..|     ...|.+++|+
T Consensus        52 ~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           52 KDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             GGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred             CCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEe
Confidence            346788899999999999999 6    7   8999999999999999998876     7888888     5899999999


Q ss_pred             ----cCCCE-EEEEeCCCeEEEEeCCC------CceeE-----Ee-------ccCCCCEEEEEEcCCCCEEEEecCCCeE
Q 023018          117 ----MDGQL-LASGGLDGLVQIWDPSS------GNLKC-----TL-------EGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (288)
Q Consensus       117 ----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i  173 (288)
                          |++++ |++++.||.|++||+.+      ++.+.     .+       ..|...+.+++|+|++ +|++++.+|.|
T Consensus       131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence                99999 99999999999999988      66555     66       4478889999999999 99999999999


Q ss_pred             EEEECCcccEEEEeec---c---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEEcCCC----------c
Q 023018          174 WMWNADRAAYLNMFSG---H---GSSVTCGDFTPDGKTICTGSDD---ATLRVWNPKSGENIHVIRGHP----------Y  234 (288)
Q Consensus       174 ~i~d~~~~~~~~~~~~---~---~~~i~~~~~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~----------~  234 (288)
                      ++||+++++.+..+..   |   ...|.+++|+|++.+|++++.|   |.|++||+++++.+..+....          .
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            9999999999999998   8   9999999999999999999999   999999999998888876511          1


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      |...|.+++|+|++.+|++++.||.|++||+.+++++..+.
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            56789999999999999999999999999999999888775

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-35  Score=250.12  Aligned_cols=206  Identities=19%  Similarity=0.216  Sum_probs=182.5

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .+....|+| ++.+|++|+.||.|++|++.+++....+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus        99 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           99 YTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             ceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            344456777 7889999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec---cCCCeEE---------------------EEEcC
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTC---------------------GDFTP  201 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------~~~~p  201 (288)
                      ..|...|.+++|+|++++|++++.||.|++||+++++.+..+..   +...+.+                     ++|+|
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            99999999999999999999999999999999999998888874   3344444                     45578


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcE-EEEe
Q 023018          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKV-CCLN  274 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~t~~~-~~~~  274 (288)
                      ++++|++++.||.|++||+++++....+...  |...|.+++|+|++. +|++|+.||.|++||+++++. +..+
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~  330 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF  330 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCT--TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccc--cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh
Confidence            8999999999999999999999887777543  678899999999998 999999999999999999754 4433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=244.42  Aligned_cols=220  Identities=22%  Similarity=0.400  Sum_probs=189.6

Q ss_pred             eecCCCCEEEEEEcCCCCc-EEEEEeCCCeEEEEEc----cCCe------eeEeecc----------ccCcEEEEEEecC
Q 023018           60 FSGHSDEVYSVACSPTDAT-LVATGGGDDKGFFWRI----NQGD------WASEIQG----------HKDSVSSLAFSMD  118 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~----------~~~~i~~~~~~~~  118 (288)
                      ...|.++|++++|+| ++. +||+|+.||.|++|++    .+++      ....+..          |...|++++|+|+
T Consensus        41 ~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            344669999999999 666 9999999999999999    8777      4444443          6779999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-------------
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-------------  185 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------  185 (288)
                      +++|++++.||.|++|+ .+++.+..+..|...|.+++|+|++++|++++.+|.|++||+++++.+.             
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            99999999999999999 6778888899999999999999999999999999999999998765433             


Q ss_pred             -------------------------------------------EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          186 -------------------------------------------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       186 -------------------------------------------~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                                                                 .+..|...|.+++|+|++++|++++.||.|++||+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                                                       2335678899999999999999999999999999999


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ++....+..   |...|.+++|+|++ +|++++.||.|++||+.+++++..+    ..+.+++|+|+
T Consensus       279 ~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          279 GNSQNCFYG---HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             BSCSEEECC---CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             CccceEecC---CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence            988888876   67899999999999 9999999999999999999988877    45777888775

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.2e-36  Score=244.17  Aligned_cols=208  Identities=21%  Similarity=0.322  Sum_probs=178.7

Q ss_pred             CeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEEecC--CCEEEEEeCCCe
Q 023018           56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~  130 (288)
                      .+..+.+|.++|++++|+|. ++.+|++|+.|++|++||+.++  .....+.+|...|.+++|+|+  +.+|++|+.||.
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            46788999999999999863 4789999999999999999876  356677889999999999997  779999999999


Q ss_pred             EEEEeCCCCce---eEEeccCCCCEEEEEEcCC-----------------CCEEEEecCCCeEEEEECCcc---cEEEEe
Q 023018          131 VQIWDPSSGNL---KCTLEGPGGGVEWVSWHPR-----------------GHIVLAGSEDSTVWMWNADRA---AYLNMF  187 (288)
Q Consensus       131 i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~  187 (288)
                      |++|++..+..   ...+..|...+.+++|+|+                 +++|++|+.|+.|++||++..   +++..+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999987632   3445678889999999997                 468999999999999999754   467788


Q ss_pred             eccCCCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCc
Q 023018          188 SGHGSSVTCGDFTPDG----KTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS  259 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~----~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  259 (288)
                      .+|...|++++|+|++    .+|++++.|+.|++|++.+..    ....+..   |...|.+++|+|++.+|++++.||.
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~---~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK---FNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE---CSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc---CCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            8999999999999986    889999999999999987631    1223333   6788999999999999999999999


Q ss_pred             EEEEEcC
Q 023018          260 VHMVNIT  266 (288)
Q Consensus       260 i~iwd~~  266 (288)
                      |++|+..
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-35  Score=247.58  Aligned_cols=218  Identities=14%  Similarity=0.166  Sum_probs=192.6

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe------eeEeeccccCcEEEEEEecC----C---CE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMD----G---QL  121 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~i~~~~~~~~----~---~~  121 (288)
                      .....+.+|.++|++++|+|   .+|++|+.||.|++|++.+++      .+..+..|..+|++++|+|+    +   ++
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            34567889999999999998   699999999999999999887      78888899999999999999    9   99


Q ss_pred             EEEEeCCCeEEEEeCCCCce-----eEEeccC-----CCCEEEEEEc----CCCCE-EEEecCCCeEEEEECCc------
Q 023018          122 LASGGLDGLVQIWDPSSGNL-----KCTLEGP-----GGGVEWVSWH----PRGHI-VLAGSEDSTVWMWNADR------  180 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------  180 (288)
                      |++++.||.|++|++.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+++      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999998887     7888888     4889999999    99999 99999999999999988      


Q ss_pred             ccEEE-----Eee-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc---ccCeEEEEEc
Q 023018          181 AAYLN-----MFS-------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH---TEGLTCLTIS  245 (288)
Q Consensus       181 ~~~~~-----~~~-------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~~  245 (288)
                      ++.+.     .+.       .|...|.+++|+|++ +|++++.||.|++||+++++.+..+.....|   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            66655     663       478899999999999 9999999999999999999888888752224   7889999999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEcCCCcEEEEecc
Q 023018          246 ADSTLALSGSKD---GSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       246 ~~~~~l~~~~~d---g~i~iwd~~t~~~~~~~~~  276 (288)
                      |++.+|++++.|   |.|++||+.+++++..+..
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV  276 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence            999999999999   9999999999999887754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=252.23  Aligned_cols=222  Identities=12%  Similarity=0.167  Sum_probs=189.1

Q ss_pred             CCCCCCeeEe-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC---Ce---eeEeeccccCcEEEEEEecCCCEEE
Q 023018           51 EQPDDSTHIF-SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GD---WASEIQGHKDSVSSLAFSMDGQLLA  123 (288)
Q Consensus        51 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~l~  123 (288)
                      ....+.+..+ .+|.++|++++|+|.++.+|++|+.||.|++|++.+   +.   ....+ .|...|++++|+|++++|+
T Consensus        49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEE
Confidence            4567788888 899999999999995677999999999999999976   33   23333 4899999999999999999


Q ss_pred             EEeCCCeEEEEeCC---CCceeEEecc------------CCCCEEEEE--EcCCCCEEEEecCCCeEEEEECCcccEEEE
Q 023018          124 SGGLDGLVQIWDPS---SGNLKCTLEG------------PGGGVEWVS--WHPRGHIVLAGSEDSTVWMWNADRAAYLNM  186 (288)
Q Consensus       124 ~~~~dg~i~i~d~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  186 (288)
                      +|+.||.|++||+.   +++....+..            +...+.++.  +++++.+|++++.||.|++||+++++++..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            99999999999994   5544443321            445566666  557899999999999999999999999999


Q ss_pred             eec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC----CCCEEEEEeCCCcE
Q 023018          187 FSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA----DSTLALSGSKDGSV  260 (288)
Q Consensus       187 ~~~--~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i  260 (288)
                      +..  |...|++++|+|++.+|++|+.||.|++||+++++.+..+...  +..+|.+++|+|    ++.+|++|+.||.|
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i  285 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--DHAPITHVEVCQFYGKNSVIVVGGSSKTFL  285 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--TCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--CCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence            988  8899999999999999999999999999999999888877522  567899996665    67799999999999


Q ss_pred             EEEEcCCCcEEEEec
Q 023018          261 HMVNITTGKVCCLNF  275 (288)
Q Consensus       261 ~iwd~~t~~~~~~~~  275 (288)
                      ++||+.+++++..+.
T Consensus       286 ~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          286 TIWNFVKGHCQYAFI  300 (437)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEEcCCCcEEEEEE
Confidence            999999999888774

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-34  Score=273.28  Aligned_cols=231  Identities=25%  Similarity=0.366  Sum_probs=209.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ......+.+|.+.|++++|+| ++.++++|+.||.|++|++.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus       605 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          605 NLSRLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI  683 (1249)
T ss_dssp             CCCSEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccceEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence            445567899999999999999 8889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ||+.+++.+..+..|...|.+++|+|  ++.++++|+.||.|++||+++++.+..+.+|...|++++|+|++++|++++.
T Consensus       684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~  763 (1249)
T 3sfz_A          684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA  763 (1249)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence            99999999999999999999999999  5568999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCC----------------------------------------------------CccccCe
Q 023018          212 DATLRVWNPKSGENIHVIRGH----------------------------------------------------PYHTEGL  239 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~----------------------------------------------------~~~~~~v  239 (288)
                      ||.|++||+.++.....+...                                                    ..|...+
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999999877554433210                                                    1356788


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      .+++|+|++.++++++.+|.|++|++.+++.+..+    ..+.+++|+|+
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  893 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD  893 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence            99999999999999999999999999999998887    34677777765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-34  Score=242.14  Aligned_cols=201  Identities=17%  Similarity=0.147  Sum_probs=169.7

Q ss_pred             CCCCEEEEEEcCCCCcEEE--EEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           63 HSDEVYSVACSPTDATLVA--TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~--~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      +...+.+++|+| ++++++  +++.|++|+|||+.+++.+..+. |...|.+++|+|++++|++++.++ +++|+..+++
T Consensus       132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred             cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence            445689999999 666654  45578999999999999988886 778899999999999999998554 6666666666


Q ss_pred             eeEE--eccCCCCEEEEEEcCCCCEEEEecCCC----eEEEEECCcccE----EEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          141 LKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       141 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      ....  ...|...+.+++|+|+++.+++++.++    .+++|++.....    ...+..|..+|++++|+|+|++|++|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            5433  345777899999999999999998877    688899876542    355678899999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      .|+.|+|||+++++++..+...  |..+|++++|+|+|++|++|+.|++|+||++...
T Consensus       289 ~D~~V~iwd~~~~~~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKIFKQA--HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEETTTTEEEEEETTS--SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEECCCCcEEEEecCc--ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999988876322  8899999999999999999999999999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-34  Score=241.38  Aligned_cols=224  Identities=20%  Similarity=0.305  Sum_probs=197.2

Q ss_pred             CCeeEeec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           55 DSTHIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        55 ~~~~~~~~-h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .....+.. |...|++++|+| ++.+|++|+.||.|++|++.+++.+..+.+|...|.+++|+  +.+|++|+.||.|++
T Consensus       124 ~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i  200 (401)
T 4aez_A          124 SVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHH  200 (401)
T ss_dssp             CEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             cEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEE
Confidence            34444444 889999999999 88899999999999999999999999999999999999994  569999999999999


Q ss_pred             EeCC-CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-EEEEEe-
Q 023018          134 WDPS-SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTGS-  210 (288)
Q Consensus       134 ~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l~~~~-  210 (288)
                      ||+. .......+..|.+.|.+++|+|++++|++|+.||.|++||+++++++..+..|...|.+++|+|++. ++++++ 
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            9998 5567778889999999999999999999999999999999999999999999999999999999664 556654 


Q ss_pred             -CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcEEEEe------cceEEEE
Q 023018          211 -DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHMVNITTGKVCCLN------FQYTCVA  281 (288)
Q Consensus       211 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~t~~~~~~~------~~~~~~~  281 (288)
                       .|+.|++||+.+++.+..+.    +...+.+++|+|++.+|+++  +.||.|++|++.+++.....      ..+.+++
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~  356 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA  356 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence             69999999999999888886    56789999999999999984  48999999999997766543      4567778


Q ss_pred             Eeec
Q 023018          282 YDLD  285 (288)
Q Consensus       282 ~~~d  285 (288)
                      |+|+
T Consensus       357 ~s~d  360 (401)
T 4aez_A          357 LSPD  360 (401)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            8775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=235.23  Aligned_cols=228  Identities=15%  Similarity=0.212  Sum_probs=205.0

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---  128 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  128 (288)
                      ...+.+..+.+|...|++++|+| ++.+|++++.||.|++|++.+++.+..+. +...+.+++|+|++++|++++.+   
T Consensus        62 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  139 (369)
T 3zwl_B           62 LNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMK  139 (369)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred             CCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccC
Confidence            34577888999999999999999 78899999999999999999999988888 88999999999999999999998   


Q ss_pred             --CeEEEEeCCCCc-----------eeEEeccCCC--CEEEEEEcCCCCEEEEecCCCeEEEEECCc-ccEEEEeeccCC
Q 023018          129 --GLVQIWDPSSGN-----------LKCTLEGPGG--GVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGS  192 (288)
Q Consensus       129 --g~i~i~d~~~~~-----------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~  192 (288)
                        |.|++|++....           ....+..+..  .+.+++|+|++++|++++.+|.|++||+++ .+.+..+..|..
T Consensus       140 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  219 (369)
T 3zwl_B          140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK  219 (369)
T ss_dssp             BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS
T ss_pred             CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC
Confidence              999999987653           2334444555  899999999999999999999999999998 788888999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC--------------
Q 023018          193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--------------  258 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------  258 (288)
                      .|.+++|+|++++|++++.||.|++||+++++.+..+.    +...+..++|+|++.++++++.++              
T Consensus       220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  295 (369)
T 3zwl_B          220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF  295 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred             ceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence            99999999999999999999999999999999888887    567899999999999999999988              


Q ss_pred             cEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          259 SVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      .+++||+.+++.+..+    ..+.+++|+|+
T Consensus       296 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~  326 (369)
T 3zwl_B          296 EARFYHKIFEEEIGRVQGHFGPLNTVAISPQ  326 (369)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             eeEEEecCCCcchhheecccCcEEEEEECCC
Confidence            8999999999999887    45677788775

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=265.70  Aligned_cols=211  Identities=13%  Similarity=0.105  Sum_probs=186.6

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      ....+|...|++++|+| ++.+||+|+.||.|+||+..+.+....+. |..+|.+++|+| +++|++++.|++|++||+.
T Consensus        11 ~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            34468999999999999 78899999999999999998877766654 788999999999 8899999999999999999


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE-----------EEeeccCCCeEEEEEcCC-CCE
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-----------NMFSGHGSSVTCGDFTPD-GKT  205 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~p~-~~~  205 (288)
                      +++.+..+. +...|++++|+|++++|++|+.||.|++||+++++..           ..+.+|..+|++++|+|+ +..
T Consensus        88 ~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           88 SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            999888886 6678999999999999999999999999999987653           234568899999999995 578


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCC---------------CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGH---------------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      |++|+.||.| +||+++++.+..+..+               ..|...|.+++|+|+|.+|++++.||.|++||++++++
T Consensus       167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            9999999999 9999999888887653               12356799999999999999999999999999999998


Q ss_pred             EEE
Q 023018          271 CCL  273 (288)
Q Consensus       271 ~~~  273 (288)
                      +..
T Consensus       246 ~~~  248 (902)
T 2oaj_A          246 IMA  248 (902)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.7e-34  Score=244.93  Aligned_cols=225  Identities=21%  Similarity=0.369  Sum_probs=199.0

Q ss_pred             CCCeeEeecCCCCE-EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ......+.+|...| .++.+.   +.+|++|+.||.|++||+.+++.+..+.+|...|++++|+|++ +|++|+.||+|+
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             CcceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            34567899999884 777774   4599999999999999999999999999999999999999987 999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEc--CCCCEEEEecCCCeEEEEECCcccE-----------------------EEEe
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWH--PRGHIVLAGSEDSTVWMWNADRAAY-----------------------LNMF  187 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~  187 (288)
                      +||+.+++.+..+.+|...|.+++|+  +++.++++|+.||.|++||++++..                       +..+
T Consensus       187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999999999999999999999998  5778999999999999999987642                       4566


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .+|...+.++  ++++++|++++.||.|++||+++++.+..+..   |...|.+++|+|++.+|++|+.||.|++||+.+
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            7788888876  56789999999999999999999999888876   778999999999999999999999999999999


Q ss_pred             CcEEEEec----ceEEEEEeeccc
Q 023018          268 GKVCCLNF----QYTCVAYDLDFV  287 (288)
Q Consensus       268 ~~~~~~~~----~~~~~~~~~df~  287 (288)
                      ++++..+.    .+.++.|++.++
T Consensus       342 ~~~~~~~~~h~~~v~~~~~~~~~l  365 (464)
T 3v7d_B          342 GELMYTLQGHTALVGLLRLSDKFL  365 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSEE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCEE
Confidence            99998883    456666665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-34  Score=239.87  Aligned_cols=219  Identities=19%  Similarity=0.277  Sum_probs=189.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecC--CCEEEEEeCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLD  128 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d  128 (288)
                      ......+.+|..+|++++|+|. ++.+|++|+.||.|++|++.+++  .+..+..|...|.+++|+|+  +.+|++++.|
T Consensus        45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            4566788999999999999973 27899999999999999999987  67778889999999999999  8999999999


Q ss_pred             CeEEEEeCCCCc--eeEEeccCCCCEEEEEEcC-------------CCCEEEEecCCCeEEEEECCccc----EEEEeec
Q 023018          129 GLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHP-------------RGHIVLAGSEDSTVWMWNADRAA----YLNMFSG  189 (288)
Q Consensus       129 g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~  189 (288)
                      |.|++||+..+.  ....+..|...|.+++|+|             ++.+|++++.||.|++||++++.    .+..+..
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            999999998873  4445677889999999999             68999999999999999998653    4567778


Q ss_pred             cCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          190 HGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       190 ~~~~i~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      |...|.+++|+|+   +.+|++++.||.|++||++++..  ...+.....+...|.+++|+|++.+|++++.||.|++|+
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            9999999999999   89999999999999999987642  223333334778899999999999999999999999999


Q ss_pred             cCCCcEEE
Q 023018          265 ITTGKVCC  272 (288)
Q Consensus       265 ~~t~~~~~  272 (288)
                      +.++....
T Consensus       285 ~~~~~~~~  292 (379)
T 3jrp_A          285 ENLEGKWE  292 (379)
T ss_dssp             EEETTEEE
T ss_pred             CCCCCccc
Confidence            98654433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-35  Score=245.96  Aligned_cols=212  Identities=19%  Similarity=0.360  Sum_probs=185.8

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCCEEEEEeCCC
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ..+.+..+.+|..+|++++|+|.++.+|++|+.||.|++||+.+++.+..+   ..|...|.+++|+|++++|++++.||
T Consensus       104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  183 (366)
T 3k26_A          104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH  183 (366)
T ss_dssp             TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence            356788899999999999999977889999999999999999999988888   67999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEec----------------------------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc
Q 023018          130 LVQIWDPSSGNLKCTLE----------------------------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA  181 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  181 (288)
                      .|++||+.+++....+.                            .|...|.+++|+  +++|++++.||.|++||++++
T Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            99999998876544333                            388899999998  779999999999999999876


Q ss_pred             cE--------------EEEeeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcee----EEEcCCCccccCeEE
Q 023018          182 AY--------------LNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENI----HVIRGHPYHTEGLTC  241 (288)
Q Consensus       182 ~~--------------~~~~~~~~~~i~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~  241 (288)
                      ..              +..+..|...|++++|+|+  +++|++++.||.|++||+.+++..    ..+..+. +...|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~  340 (366)
T 3k26_A          262 EDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK-CGAAIRQ  340 (366)
T ss_dssp             TCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT-CCSCEEE
T ss_pred             cccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc-cCCceEE
Confidence            43              7778889999999999999  999999999999999999987543    3555421 3789999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ++|+|++++|++++.||.|++||+.+
T Consensus       341 ~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          341 TSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99999999999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=229.88  Aligned_cols=223  Identities=22%  Similarity=0.326  Sum_probs=197.4

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .+.+..+.+.+|.++|++++| | ++.+|++|+.||.|++|++.+++....+..|...|.+++|+|++++|++++.||.|
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            345678899999999999999 7 77789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCC---ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC-CCCEEE
Q 023018          132 QIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTIC  207 (288)
Q Consensus       132 ~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p-~~~~l~  207 (288)
                      ++|++...   +....+..|...|.+++|  +++++++++.||.|++||  .++.+..+..|..++.+++|.| ++.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence            99998654   556778889999999999  577999999999999999  6677888889999999999998 899999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD  283 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~  283 (288)
                      +++.||.|++||.  ......+...  +...+.+++|+|++. |++++.||.|++||+++++++..+    ..+.+++|+
T Consensus       160 ~~~~d~~i~i~d~--~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          160 TASADKTIKLWQN--DKVIKTFSGI--HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EEETTSCEEEEET--TEEEEEECSS--CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEECCCCEEEEec--CceEEEEecc--CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence            9999999999993  4555566543  678899999999988 889999999999999999999887    456777777


Q ss_pred             ec
Q 023018          284 LD  285 (288)
Q Consensus       284 ~d  285 (288)
                      |+
T Consensus       235 ~~  236 (313)
T 3odt_A          235 PN  236 (313)
T ss_dssp             TT
T ss_pred             cC
Confidence            76

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-34  Score=263.31  Aligned_cols=228  Identities=21%  Similarity=0.304  Sum_probs=209.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+..+.+|..+|++++|+| ++.+|++|+.||.|++|++.+++.+..+.+|...|++++|+|++++|++++.||.|++
T Consensus        45 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v  123 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL  123 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence            557788899999999999999 7889999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCC-ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeeccC-CCeEEEEEcC--CCCEEEE
Q 023018          134 WDPSSG-NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTP--DGKTICT  208 (288)
Q Consensus       134 ~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~p--~~~~l~~  208 (288)
                      |++.++ .....+..|...|.+++|+| ++..|++++.||.|++||++++.....+..+. ..+.+++|+|  ++.+|++
T Consensus       124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            999887 66777888999999999999 88899999999999999999887777776554 8899999999  9999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      ++.+|.|++||+.+++.+..+..   |...|.+++|+|++.+|++++.||.|++||+.+++.+..+    ..+.+++|+|
T Consensus       204 ~~~dg~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EeCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            99999999999999998888876   7788999999999999999999999999999999998887    4567777777


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       281 ~  281 (814)
T 3mkq_A          281 T  281 (814)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.8e-35  Score=242.85  Aligned_cols=218  Identities=17%  Similarity=0.289  Sum_probs=190.9

Q ss_pred             CCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec-CCCEEEEEeCCCeEEEEeCCC
Q 023018           63 HSDEVYSVACSPTD---ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        63 h~~~v~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      |...|++++|+|..   +.+|++|+.||.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            66889999999932   57999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CceeEEe---ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec--------------------------
Q 023018          139 GNLKCTL---EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG--------------------------  189 (288)
Q Consensus       139 ~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------  189 (288)
                      ++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++++.+..+..                          
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9988888   67899999999999999999999999999999998765444333                          


Q ss_pred             --cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--------------eEEEcCCCccccCeEEEEEcCC--CCEE
Q 023018          190 --HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--------------IHVIRGHPYHTEGLTCLTISAD--STLA  251 (288)
Q Consensus       190 --~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~l  251 (288)
                        |...|.+++|+  +++|++++.||.|++||+.++..              +..+..   |...|.+++|+|+  +.+|
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---SQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---SSCCSSCCCCEECTTSSEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc---cCCcEEEEEEcCCCCCcEE
Confidence              88999999998  77999999999999999987643              445544   6778999999999  9999


Q ss_pred             EEEeCCCcEEEEEcCCCcE----EEEe------cceEEEEEeec
Q 023018          252 LSGSKDGSVHMVNITTGKV----CCLN------FQYTCVAYDLD  285 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~t~~~----~~~~------~~~~~~~~~~d  285 (288)
                      ++|+.||.|++||+.++++    +..+      ..+.+++|+|+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  346 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD  346 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence            9999999999999999853    2233      45778888775

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=249.86  Aligned_cols=212  Identities=13%  Similarity=0.202  Sum_probs=179.0

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----------eeEeecccc------------CcEEEEEEecCC
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------WASEIQGHK------------DSVSSLAFSMDG  119 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~~  119 (288)
                      |.+.|++++|+| ++.+||+|+.||.|+||++.+++           ....+.+|.            ..|++++|+|++
T Consensus        27 ~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            568999999999 88899999999999999999876           477888898            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCcee---------------------------------------EE-eccCCCCEEEEEE
Q 023018          120 --QLLASGGLDGLVQIWDPSSGNLK---------------------------------------CT-LEGPGGGVEWVSW  157 (288)
Q Consensus       120 --~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~i~~~~~  157 (288)
                        .+|++++.||.|++|++.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764331                                       12 3578899999999


Q ss_pred             cCCCCEEEEecCCCeEEEEECCc-ccEEE-------EeeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce---
Q 023018          158 HPRGHIVLAGSEDSTVWMWNADR-AAYLN-------MFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGEN---  225 (288)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~d~~~~~~---  225 (288)
                      +|++++|++| .||.|++||+++ ++.+.       .+..|...|++++|+|++ .+|++|+.||.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 799999999984 44444       255789999999999998 9999999999999999998876   


Q ss_pred             -eEEEcCCCc---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEecce
Q 023018          226 -IHVIRGHPY---------HTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVCCLNFQY  277 (288)
Q Consensus       226 -~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t-~~~~~~~~~~  277 (288)
                       ...+..+..         |...|.+++|+|++++|++++. |.|++||+++ ++++..+..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence             677766311         1138999999999999999998 9999999997 8877766444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=243.16  Aligned_cols=228  Identities=15%  Similarity=0.256  Sum_probs=206.9

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCc---------------EEEEEEe
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------------VSSLAFS  116 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------------i~~~~~~  116 (288)
                      ........+.+|..+|++++|+| ++.+|++++.||.|++|++.+++.+..+..+...               +.+++|+
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (425)
T 1r5m_A          137 KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV  215 (425)
T ss_dssp             TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred             CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence            44567888899999999999999 7889999999999999999999999888877766               8999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (288)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (288)
                      |++ .+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.+|.|++||+++++.+..+..|...|.+
T Consensus       216 ~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  294 (425)
T 1r5m_A          216 DDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS  294 (425)
T ss_dssp             ETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEE
T ss_pred             CCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEE
Confidence            975 6889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-------
Q 023018          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-------  269 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~-------  269 (288)
                      ++|+|++ +|++++.||.|++||+++++.+..+..   +...+.+++|+|++.+|++++.||.|++|++.+++       
T Consensus       295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~  370 (425)
T 1r5m_A          295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV---DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY  370 (425)
T ss_dssp             EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC---TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred             EEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc---CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence            9999998 999999999999999999998888876   67899999999999999999999999999999988       


Q ss_pred             -------------EEEEec------ceEEEEEeec
Q 023018          270 -------------VCCLNF------QYTCVAYDLD  285 (288)
Q Consensus       270 -------------~~~~~~------~~~~~~~~~d  285 (288)
                                   ++..+.      .+.+++|+|+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             cccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence                         777762      6778888776

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=241.84  Aligned_cols=229  Identities=16%  Similarity=0.235  Sum_probs=192.9

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeeeEee-ccccCcEEEEEEecC---CCEEEEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGG---DDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD---GQLLASG  125 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~---~~~l~~~  125 (288)
                      +....+.+.+|..+|++++|+|.+..++++|+.   ||.|++|++.+++..... ..|..+|.+++|+|+   +.+|++|
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            344556778999999999999966577778876   999999999988765443 368999999999998   6899999


Q ss_pred             eCCCeEEEEeCCCCc-eeEEeccCCCCEEEEEE------cCCCCEEEEecCCCeEEEEECCccc-EEEEeeccCC----C
Q 023018          126 GLDGLVQIWDPSSGN-LKCTLEGPGGGVEWVSW------HPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGS----S  193 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~  193 (288)
                      +.||.|++||+.+++ .+..+..|...|.+++|      +|++++|++++.||.|++||++++. ++..+..+..    .
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD  166 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence            999999999999988 88889999999999955      6789999999999999999999886 6777765554    7


Q ss_pred             eEEEE----EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC---CCCEEEEEeCCCcEEEEEcC
Q 023018          194 VTCGD----FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA---DSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       194 i~~~~----~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +.+++    |+|++++|++++.+|.|++||+++++......    +...|.+++|+|   ++.+|++++.||.|++||++
T Consensus       167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            88988    78899999999999999999999988755543    678899999999   89999999999999999998


Q ss_pred             CCcEEEEe---------cceEEEEEeec
Q 023018          267 TGKVCCLN---------FQYTCVAYDLD  285 (288)
Q Consensus       267 t~~~~~~~---------~~~~~~~~~~d  285 (288)
                      +++.+..+         ..+.+++|+|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~  270 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQ  270 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETT
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCC
Confidence            86544322         46778888875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=246.94  Aligned_cols=220  Identities=16%  Similarity=0.296  Sum_probs=194.3

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEecC-CCEEEEEeCCCeEEEEeC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~  136 (288)
                      .|...|++++|+| ++.+|++|+.||.|++|++.+    .+.+..+.+|...|++++|+|+ +.+|++++.||.|++||+
T Consensus        65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            5889999999999 788999999999999999987    4578888899999999999998 889999999999999999


Q ss_pred             CCCc------eeEE---eccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeecc------CCCeEEEEEc
Q 023018          137 SSGN------LKCT---LEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGH------GSSVTCGDFT  200 (288)
Q Consensus       137 ~~~~------~~~~---~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~  200 (288)
                      .+++      ....   +..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+      ...+.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            9876      3322   3568889999999998 789999999999999999999988888876      7899999999


Q ss_pred             CCC-CEEEEEeCCC---eEEEEeCCCC-ceeEEEc-CCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          201 PDG-KTICTGSDDA---TLRVWNPKSG-ENIHVIR-GHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       201 p~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                      |++ .+|++++.++   .|++||++++ .....+. .   |...|.+++|+| ++.+|++++.||.|++||+.+++++..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence            987 6899999998   9999999986 4455554 4   778999999999 999999999999999999999999988


Q ss_pred             e----cceEEEEEeec
Q 023018          274 N----FQYTCVAYDLD  285 (288)
Q Consensus       274 ~----~~~~~~~~~~d  285 (288)
                      +    ..+.+++|+|+
T Consensus       301 ~~~~~~~v~~~~~s~~  316 (416)
T 2pm9_A          301 FPARGNWCFKTKFAPE  316 (416)
T ss_dssp             EECSSSCCCCEEECTT
T ss_pred             ecCCCCceEEEEECCC
Confidence            7    34677888875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-33  Score=241.45  Aligned_cols=224  Identities=22%  Similarity=0.380  Sum_probs=198.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEe--cCCCEEEEEeCCCe
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS--MDGQLLASGGLDGL  130 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~  130 (288)
                      ..+.+..+.+|.++|++++|+| ++ ++++|+.||+|++||+.+++.+..+.+|...|.+++|+  +++.+|++|+.||.
T Consensus       151 ~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          151 NKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            3567788899999999999998 55 89999999999999999999999999999999999998  46789999999999


Q ss_pred             EEEEeCCCCce-----------------------eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe
Q 023018          131 VQIWDPSSGNL-----------------------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (288)
Q Consensus       131 i~i~d~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (288)
                      |++||+.++..                       ...+.+|...+.++  +++++++++++.||.|++||+++++++..+
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  306 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  306 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999987653                       44566788888877  567889999999999999999999999999


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..   |...|.++.|+  +.+|++++.||.|++||+.+
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---HTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999999999999999999999999988877   78899999997  57999999999999999999


Q ss_pred             CcEEEEe---cceEEEEEeec
Q 023018          268 GKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       268 ~~~~~~~---~~~~~~~~~~d  285 (288)
                      ++.....   .....++|+++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~  402 (464)
T 3v7d_B          382 YSRKFSYHHTNLSAITTFYVS  402 (464)
T ss_dssp             CCEEEEEECTTCCCEEEEEEC
T ss_pred             CceeeeecCCCCccEEEEEeC
Confidence            8877665   33455566654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.4e-34  Score=237.29  Aligned_cols=207  Identities=19%  Similarity=0.258  Sum_probs=186.9

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ....+.+|...|++++|+| ++.+|++++.||.|++|++.+++....  +..|...|.+++|+|++++|++++.+|.|++
T Consensus        44 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             eeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            6788899999999999999 788999999999999999998875444  3568999999999999999999999999999


Q ss_pred             EeCCCCce---eEE-eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC------------------cccEEEEeeccC
Q 023018          134 WDPSSGNL---KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD------------------RAAYLNMFSGHG  191 (288)
Q Consensus       134 ~d~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~  191 (288)
                      ||+..+..   ... ...|...|.+++|+|++++|++++.||.|++||++                  .++.+..+..|.
T Consensus       123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            99988763   233 35678899999999999999999999999999953                  678888888999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ..|.+++|+|++++|++++.||.|++||+++++.+..+..   +..+|.+++|+|++.+|+++ .||.|++|++.+
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc---CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999999999999999999999999999888876   67789999999999988877 899999999988

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=249.58  Aligned_cols=213  Identities=22%  Similarity=0.388  Sum_probs=192.2

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe------eeEe---eccccCcEEEEEEecC-CCEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASE---IQGHKDSVSSLAFSMD-GQLLAS  124 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~---~~~~~~~i~~~~~~~~-~~~l~~  124 (288)
                      .....+.+|...|++++|+|.++.+|++++.||.|++|++.+++      ....   +..|...|.+++|+|+ +.+|++
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            47888899999999999999548899999999999999999876      3333   3578999999999998 789999


Q ss_pred             EeCCCeEEEEeCCCCceeEEeccC------CCCEEEEEEcCCC-CEEEEecCCC---eEEEEECCcc-cEEEEee-ccCC
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRG-HIVLAGSEDS---TVWMWNADRA-AYLNMFS-GHGS  192 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~  192 (288)
                      ++.||.|++||+.+++.+..+..+      ...+.+++|+|++ .++++++.++   .|++||++++ .++..+. +|..
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~  263 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK  263 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC
Confidence            999999999999999988888776      7889999999987 6999999998   9999999986 6777787 8999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcE
Q 023018          193 SVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       193 ~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      .|++++|+| ++.+|++++.||.|++||+++++.+..+..   |...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA---RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC---SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC---CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            999999999 999999999999999999999999888886   67889999999998 8999999999999999988764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=254.74  Aligned_cols=207  Identities=13%  Similarity=0.120  Sum_probs=180.2

Q ss_pred             eEeecCCCCEEEEEEcCC-----CCcEEEEEeCCCeEEEEEccCCee-----------eEeeccccCcEEEEEEecCCCE
Q 023018           58 HIFSGHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDW-----------ASEIQGHKDSVSSLAFSMDGQL  121 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~  121 (288)
                      ..+.+|.+.|.+++|+|.     ++.+||+++.||+|++|++.++..           ...+.+|...|++++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            456788899999999994     257999999999999999986532           23677899999999999864 8


Q ss_pred             EEEEeCCCeEEEEeCCCCc-eeEEeccCCCCEEEE--EEcCCC-CEEEEecCCCeEEEEECCcccEEEEeeccCC--CeE
Q 023018          122 LASGGLDGLVQIWDPSSGN-LKCTLEGPGGGVEWV--SWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVT  195 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~  195 (288)
                      |++|+.||+|++||+.++. ....+..|...|.++  +|+|++ .+|++|+.|++|++||+++++++..+.+|..  .|.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            9999999999999999764 455688899999999  567887 8999999999999999999887777766653  578


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      +++|+|+++.|++++.|++|++||++++..+..+.+   |...|++++|+|++.+|++|+.||+|++|++..+
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            999999999999999999999999999988777776   7889999999999999999999999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-34  Score=244.04  Aligned_cols=227  Identities=9%  Similarity=0.055  Sum_probs=193.1

Q ss_pred             eEeecCCCCEEEEEEcCCCCcE-EEEEeCCCeEEEEEcc--CCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATL-VATGGGDDKGFFWRIN--QGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~-l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ....+|.+.|++++|+| ++.+ +++|+.||.|++|++.  +++.+..+.  .|...|++++|+|++++|++|+.+|.|+
T Consensus        96 ~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVY  174 (450)
T ss_dssp             ----CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence            44567888999999999 5555 5899999999999999  888887776  4678999999999999999999999999


Q ss_pred             EEeCCCCceeE----EeccCCCCEEEEEEcCC---CCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCC
Q 023018          133 IWDPSSGNLKC----TLEGPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       133 i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~  204 (288)
                      +|++.+++...    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|...|++++|+ +++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence            99998876544    67778899999999999   99999999999999999999988877 55899999999999 999


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCC----------------------ccccCeEEEEEcCCCCEEEEEe-CCCcEE
Q 023018          205 TICTGSDDATLRVWNPKSGENIHVIRGHP----------------------YHTEGLTCLTISADSTLALSGS-KDGSVH  261 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  261 (288)
                      +|++++.|+.|++||+++++.+..+....                      .....|..++|+|++++|++++ .++.|+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            99999999999999999999888775321                      1345789999999999999998 899999


Q ss_pred             EEEc--CCC---cEEEEe---cceEEEEEeecc
Q 023018          262 MVNI--TTG---KVCCLN---FQYTCVAYDLDF  286 (288)
Q Consensus       262 iwd~--~t~---~~~~~~---~~~~~~~~~~df  286 (288)
                      +|++  .++   +.+..+   ..+.+++|+|+-
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  366 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFPYNVISLSAHNDE  366 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECSSCEEEEEEETTE
T ss_pred             EEEeccCCCCceeeccEeccCCceEEEEecCCc
Confidence            9999  666   555554   467788887753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-35  Score=264.08  Aligned_cols=225  Identities=19%  Similarity=0.288  Sum_probs=190.9

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeeeEeeccccCcEEEEEEecC--CCEEEEEeCCCeEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQ  132 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~  132 (288)
                      ..++.+|.++|++++|+| ++.+|++|+.||.|++|++.  +++.+..+.+|..+|++++|+|+  +++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            457899999999999999 77899999999999999998  45677788899999999999987  89999999999999


Q ss_pred             EEeCCCCc--eeEEeccCCCCEEEEEEcCC--CCEEEEecCCCeEEEEECCcc--cEEEEeeccCCCeEEEEEcC-----
Q 023018          133 IWDPSSGN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTP-----  201 (288)
Q Consensus       133 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~p-----  201 (288)
                      +||+.+++  ....+..|...|.+++|+|+  ++.+++|+.||.|++||++++  .....+..|...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999886  66777889999999999998  999999999999999999887  34456678999999999999     


Q ss_pred             --------CCCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEEcC
Q 023018          202 --------DGKTICTGSDDATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISAD---STLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       202 --------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~  266 (288)
                              ++.+|++|+.||.|++||++++.    ....+..   |..+|.+++|+|+   +.+|++++.||.|++||+.
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC---CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC---CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                    58999999999999999998773    3344444   7889999999999   8999999999999999999


Q ss_pred             CCcE-----EEEe----cceEEEEEeec
Q 023018          267 TGKV-----CCLN----FQYTCVAYDLD  285 (288)
Q Consensus       267 t~~~-----~~~~----~~~~~~~~~~d  285 (288)
                      +++.     +...    ..+.+++|+|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spd  265 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLS  265 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTT
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCC
Confidence            8742     1111    45667777775

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-35  Score=246.42  Aligned_cols=206  Identities=16%  Similarity=0.263  Sum_probs=173.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---eeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      .....+.+|..+|++++|+| ++.+|++++.||.|++|++.+++   ....+..|...|.+++|+|++++|++++.|+.|
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  124 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI  124 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred             EEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence            56677889999999999999 77899999999999999999876   667778899999999999999999999999999


Q ss_pred             EEEeCCCCc---eeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECC------------------cccEEEEeec
Q 023018          132 QIWDPSSGN---LKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD------------------RAAYLNMFSG  189 (288)
Q Consensus       132 ~i~d~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~  189 (288)
                      ++||+.+++   ....+.. |...|.+++|+|++++|++++.||.|++||++                  .++++..+ .
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  203 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P  203 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c
Confidence            999999887   4667777 89999999999999999999999999999985                  35566777 8


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       190 ~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      |...|++++|+|++++|++++.||.|++||+.+++.    +..+..   |...|.+++|+|++++|++++.++.+ +|+.
T Consensus       204 ~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          204 SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL---SQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC---SSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC---CCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            999999999999999999999999999999998876    455554   77889999999999999888766555 7766


Q ss_pred             C
Q 023018          266 T  266 (288)
Q Consensus       266 ~  266 (288)
                      .
T Consensus       280 ~  280 (377)
T 3dwl_C          280 N  280 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=235.45  Aligned_cols=216  Identities=16%  Similarity=0.304  Sum_probs=187.2

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-------------cccCcEEEEEEec-CC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------------GHKDSVSSLAFSM-DG  119 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~i~~~~~~~-~~  119 (288)
                      .+....+.+|.++|++++|+|.++.+|++|+.||.|++|++.++.....+.             +|...|.+++|+| ++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            456678889999999999999667899999999999999999876544442             5899999999999 77


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCC---CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEE
Q 023018          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR---GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC  196 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  196 (288)
                      .+|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.+|.|++||+++++.+..+..|...|.+
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            799999999999999999998888776 6677999999984   449999999999999999999999999999999999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCCCc-eeEEEcCC------------CccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          197 GDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGH------------PYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       197 ~~~~p~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                      ++|+|++. .|++++.||.|++||++++. .+..+...            ..|...|.+++|+|++.+|++++.||.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            99999988 58999999999999998765 33333111            237788999999999999999999999999


Q ss_pred             EEcCCCcE
Q 023018          263 VNITTGKV  270 (288)
Q Consensus       263 wd~~t~~~  270 (288)
                      ||+.+++.
T Consensus       272 wd~~~~~~  279 (408)
T 4a11_B          272 WNSSNGEN  279 (408)
T ss_dssp             EETTTCCB
T ss_pred             EECCCCcc
Confidence            99987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.2e-34  Score=237.79  Aligned_cols=220  Identities=15%  Similarity=0.201  Sum_probs=183.8

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      .+|...|++++|+|.++.+|++++.||.|++|++.+ ..+..+..   |...|.+++|+|++++|++|+.||.|++||+ 
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-  192 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-  192 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-
Confidence            379999999999996678999999999999999986 44445443   4478999999999999999999999999999 


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCc----ccEEEEeeccCCCeEEEEEcC-CCCEEEEEeC
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTP-DGKTICTGSD  211 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~  211 (288)
                      +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||+++    +..+..+ .|...|++++|+| ++.+|++++.
T Consensus       193 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          193 DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            5778888899999999999999998 999999999999999998    5666666 6999999999999 9999999999


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCc----cc----------cCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-
Q 023018          212 DATLRVWNPKSGENIHVIRGHPY----HT----------EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ-  276 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~----~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~-  276 (288)
                      |+.|++||++++.....+..+..    +.          ..+..++|+|++++  +++.||.|++||+.+++++..+.. 
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence            99999999998877666654321    12          23444566666655  667899999999999999988742 


Q ss_pred             -----eEEEEEeec
Q 023018          277 -----YTCVAYDLD  285 (288)
Q Consensus       277 -----~~~~~~~~d  285 (288)
                           +..++|+|+
T Consensus       350 ~~~~~~~~~~~s~~  363 (383)
T 3ei3_B          350 NAAGIISLNKFSPT  363 (383)
T ss_dssp             TBCSCCCEEEECTT
T ss_pred             CCCceEEEEEEecC
Confidence                 344577765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=243.68  Aligned_cols=216  Identities=15%  Similarity=0.248  Sum_probs=180.6

Q ss_pred             CCeeEeecCC------------CCEEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeee---------------------
Q 023018           55 DSTHIFSGHS------------DEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWA---------------------  100 (288)
Q Consensus        55 ~~~~~~~~h~------------~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~---------------------  100 (288)
                      +....+.+|.            .+|++++|+|.+. .+|++++.||.|++|++.++...                     
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            3577889998            8899999999432 68999999999999999764432                     


Q ss_pred             ------------------Ee-eccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeE-------EeccCCCCEE
Q 023018          101 ------------------SE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKC-------TLEGPGGGVE  153 (288)
Q Consensus       101 ------------------~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~-------~~~~~~~~i~  153 (288)
                                        .. ..+|...|++++|+|++++|++| .||.|++||+.+. +...       .+..|...|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  230 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT  230 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceE
Confidence                              12 35799999999999999999998 7999999999843 3333       2457888999


Q ss_pred             EEEEcCCC-CEEEEecCCCeEEEEECCcccE----EEEeeccCC------------CeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          154 WVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----LNMFSGHGS------------SVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       154 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      +++|+|++ ++|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|+
T Consensus       231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~  309 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVK  309 (447)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEE
T ss_pred             EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEE
Confidence            99999998 9999999999999999999876    677877775            8999999999999999998 9999


Q ss_pred             EEeCCC-CceeEEEcCCCcccc------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          217 VWNPKS-GENIHVIRGHPYHTE------------GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       217 i~d~~~-~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      +||+++ ++.+..+..+.....            .+..++|+|++.+|++|+.||.|++||+.+++.+.
T Consensus       310 iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          310 VWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             EEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence            999997 777777776431111            13458999999999999999999999999998875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.9e-34  Score=235.33  Aligned_cols=225  Identities=14%  Similarity=0.219  Sum_probs=189.1

Q ss_pred             eecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEEccCCe-eeEeeccccCcEEEEEE------ecCCCEEEEEeCCCe
Q 023018           60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD-WASEIQGHKDSVSSLAF------SMDGQLLASGGLDGL  130 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~  130 (288)
                      ..+|..+|++++|+|..  +.+|++|+.||.|++|++.+++ .+..+.+|...|.++.|      +|++++|++++.||.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            34799999999999943  6899999999999999999887 88889999999999965      678999999999999


Q ss_pred             EEEEeCCCCc-eeEEeccCCC----CEEEEE----EcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          131 VQIWDPSSGN-LKCTLEGPGG----GVEWVS----WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       131 i~i~d~~~~~-~~~~~~~~~~----~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      |++||+.+++ ....+..+.+    .+.+++    |+|++++|++++.+|.|++||+++++.... ..|...|.+++|+|
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence            9999999886 6777765544    789998    678999999999999999999999887544 56889999999999


Q ss_pred             ---CCCEEEEEeCCCeEEEEeCCCCceeEEEc--CCCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc------
Q 023018          202 ---DGKTICTGSDDATLRVWNPKSGENIHVIR--GHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGK------  269 (288)
Q Consensus       202 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~t~~------  269 (288)
                         ++.+|++++.||.|++||+++++....+.  ....|...|.+++|+|++. +|++++.||.|++||+.++.      
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence               89999999999999999998766544433  1112788999999999998 89999999999999998653      


Q ss_pred             -------------EEEEe----cceEEEEEeec
Q 023018          270 -------------VCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       270 -------------~~~~~----~~~~~~~~~~d  285 (288)
                                   ++..+    ..+.+++|+|+
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             CCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence                         33333    45778888876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-33  Score=235.66  Aligned_cols=227  Identities=21%  Similarity=0.342  Sum_probs=195.4

Q ss_pred             CCCCCeeEee--cCCCC--EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEe
Q 023018           52 QPDDSTHIFS--GHSDE--VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        52 ~~~~~~~~~~--~h~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      .+..+...+.  +|...  +.+++|++   ..+++++.||.|++|++.+++....+.. |...|++++|+|++++|++|+
T Consensus        77 ~~~~p~~~~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  153 (401)
T 4aez_A           77 FNTTPERVLDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL  153 (401)
T ss_dssp             CCCSCSEEEECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcceeeeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC
Confidence            3444555554  66655  55577765   2366778899999999999988777765 789999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEEEEeeccCCCeEEEEEcCCCCE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      .||.|++||+.+++.+..+..|...|.+++|+  ++.|++++.||.|++||++ ....+..+..|...|.+++|+|++.+
T Consensus       154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  231 (401)
T 4aez_A          154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ  231 (401)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE
Confidence            99999999999999999999999999999994  5799999999999999998 46778888999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCC-CEEEEEe--CCCcEEEEEcCCCcEEEEe---cceEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGS--KDGSVHMVNITTGKVCCLN---FQYTC  279 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~dg~i~iwd~~t~~~~~~~---~~~~~  279 (288)
                      |++++.||.|++||++++.....+..   |...|.+++|+|++ .++++++  .||.|++||+.+++++..+   ..+.+
T Consensus       232 l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~  308 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS  308 (401)
T ss_dssp             EEEEETTSCEEEEETTCSSEEEEECC---CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEE
T ss_pred             EEEEeCCCeEEEccCCCCCccEEecC---CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            99999999999999999988888776   77889999999966 5666654  6999999999999998887   56788


Q ss_pred             EEEeecc
Q 023018          280 VAYDLDF  286 (288)
Q Consensus       280 ~~~~~df  286 (288)
                      ++|+|+.
T Consensus       309 ~~~s~~~  315 (401)
T 4aez_A          309 LIWSPHS  315 (401)
T ss_dssp             EEECSSS
T ss_pred             EEECCCC
Confidence            8888763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.2e-33  Score=238.18  Aligned_cols=212  Identities=21%  Similarity=0.384  Sum_probs=184.7

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-------eEeeccccCcEEEEEEec-CCCEEEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-------ASEIQGHKDSVSSLAFSM-DGQLLASG  125 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~  125 (288)
                      ..+...+.+|...|++++|+|.+..+|++|+.||.|++|++.++..       ...+..|...|.+++|+| ++.+|+++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            5778889999999999999995555999999999999999987322       455678999999999999 67799999


Q ss_pred             eCCCeEEEEeCCCC---ceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCc-ccEEEEeeccCCCeEEEEEc
Q 023018          126 GLDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       126 ~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~  200 (288)
                      +.||.|++||++++   +....+..|...|++++|+|++. +|++|+.||.|++||+++ ..++..+..|...|++++|+
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s  330 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  330 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred             eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence            99999999999987   56777888999999999999887 789999999999999998 56788888999999999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEeCCCC--------------ceeEEEcCCCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023018          201 PDGK-TICTGSDDATLRVWNPKSG--------------ENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVN  264 (288)
Q Consensus       201 p~~~-~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  264 (288)
                      |++. +|++++.||.|++||+...              +.+..+.+   |...|++++|+|++. +|++++.||.|++|+
T Consensus       331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---HTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC---CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC---CCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            9885 6899999999999999762              33444433   788899999999998 899999999999999


Q ss_pred             cCCC
Q 023018          265 ITTG  268 (288)
Q Consensus       265 ~~t~  268 (288)
                      +.++
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            9754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=223.87  Aligned_cols=220  Identities=20%  Similarity=0.280  Sum_probs=194.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      ......+..|...|.+++|+| ++.+|++++.||.|++|++...   +.+..+..|...|.+++|  ++++|++++.||.
T Consensus        49 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~  125 (313)
T 3odt_A           49 QWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT  125 (313)
T ss_dssp             SEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             CEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence            456678889999999999999 8889999999999999998764   567778889999999999  5679999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~  208 (288)
                      |++||  .++....+..|...+.+++|+| ++..+++++.+|.|++||  ..+....+.. |...+.+++|+|++. +++
T Consensus       126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~  200 (313)
T 3odt_A          126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS  200 (313)
T ss_dssp             EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred             EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence            99999  6777888888999999999998 899999999999999999  4455666666 889999999999988 999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      ++.+|.|++||+++++.+..+..   |...|.+++|+|++ .|++++.||.|++||+.+++++..+    ..+.+++|+|
T Consensus       201 ~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDVLRTYEG---HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             EETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred             ccCCCeEEEEECCchhhhhhhhc---CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence            99999999999999999888876   77899999999998 5889999999999999999998887    4567788877


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       277 ~  277 (313)
T 3odt_A          277 N  277 (313)
T ss_dssp             T
T ss_pred             C
Confidence            6

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9e-33  Score=234.74  Aligned_cols=209  Identities=24%  Similarity=0.422  Sum_probs=172.6

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee-------------------------------------
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-------------------------------------  103 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------------------------  103 (288)
                      .+|...|++++|+| ++.+||+|+.||.|+||++.+++.+..+                                     
T Consensus       144 ~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          144 EQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             CSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             cCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee
Confidence            46788999999999 8889999999999999999887655444                                     


Q ss_pred             ----ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc----eeEEeccCCCCEEEEEEcCCCC-EEEE--ecCCCe
Q 023018          104 ----QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWHPRGH-IVLA--GSEDST  172 (288)
Q Consensus       104 ----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~  172 (288)
                          .+|...+..+.|+|++.++++++.||.+++|+..+++    .+.....|...|.+++|+|.+. ++++  |+.|++
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~  302 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  302 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred             eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence                3455666677777777788888888888888877654    3445667888999999999554 5554  457999


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL  250 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (288)
                      |++||+++++++..+.. ...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.+   |...|++++|+|+|.+
T Consensus       303 I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g---H~~~V~~l~~spdg~~  378 (420)
T 4gga_A          303 IRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             EEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSSC
T ss_pred             EEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCE
Confidence            99999999998888874 46788999999999988765  689999999999999999987   7889999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          251 ALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |++|+.||+|+|||+....+....
T Consensus       379 l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          379 VASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEEEETTTEEEEECCSCSSCC---
T ss_pred             EEEEecCCeEEEEECCCCCccchh
Confidence            999999999999999876555444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-33  Score=232.52  Aligned_cols=221  Identities=10%  Similarity=0.054  Sum_probs=189.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---eeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQI  133 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  133 (288)
                      ....+|.+.|++++|+| ++.+|++++.||.|++|++.++.   ....+..|...|++++|+|+++ +|++|+.||.|++
T Consensus         5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ecccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44568999999999999 78899999999999999999876   3445557999999999999999 9999999999999


Q ss_pred             EeC-CCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---------ccEEEEeeccCCCeEEEEEcC
Q 023018          134 WDP-SSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---------AAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       134 ~d~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      |++ .+++. ..+..  |...|.+++|+| +..|++++.|+.|++||+++         ++++..+. |...+.+++|+|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            999 77654 67777  999999999999 99999999999999999988         77777776 889999999998


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-Ccee-EEEcCCCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC------cEEE
Q 023018          202 DGKTICTGSDDATLRVWNPKS-GENI-HVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG------KVCC  272 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~------~~~~  272 (288)
                      ++  |++++.++.|++||+++ +... ......  +...+.+++|+| ++.+|++++.||.|++|++..+      +...
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG--LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECS--CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecC--CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            86  99999999999999987 5432 222211  677899999999 9999999999999999999887      5555


Q ss_pred             Eec-------------ceEEEEEeecc
Q 023018          273 LNF-------------QYTCVAYDLDF  286 (288)
Q Consensus       273 ~~~-------------~~~~~~~~~df  286 (288)
                      .+.             .+.+++|+|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~  263 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRH  263 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred             eeecccccccccccceeEEEEEEcCCC
Confidence            552             67788887753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-33  Score=237.51  Aligned_cols=216  Identities=21%  Similarity=0.342  Sum_probs=186.6

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEec-CCCEEEEEeCCCeEEEEeCCCC--
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSG--  139 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--  139 (288)
                      ...++++|....++++++.+|.|+||++....    .+..+.+|...|++++|+| ++.+|++|+.||.|++|++.++  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            44688998545566678999999999996642    3445778999999999999 8999999999999999999987  


Q ss_pred             -----ceeEEeccCCCCEEEEEEcCCC-CEEEEecCCCeEEEEECCcccEEEEe--eccCCCeEEEEEcCCCCEEEEEeC
Q 023018          140 -----NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       140 -----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                           +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++|+|++.+|++++.
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                 5677888999999999999998 69999999999999999999999998  789999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEE-cCCCcccc-CeEEEEEcCCCCEEEEE---eCCCcEEEEEcCCCcE-E--EEe---cceEEE
Q 023018          212 DATLRVWNPKSGENIHVI-RGHPYHTE-GLTCLTISADSTLALSG---SKDGSVHMVNITTGKV-C--CLN---FQYTCV  280 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~t~~~-~--~~~---~~~~~~  280 (288)
                      ||.|++||+++++.+..+ ..   |.. .+.++.|+|++.+|++|   +.|+.|++||+++++. +  ..+   ..+.++
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRP---HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECS---SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             CCcEEEEeCCCCceeeeeccC---CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            999999999999888887 44   444 48899999999999999   7899999999998764 2  221   457778


Q ss_pred             EEeec
Q 023018          281 AYDLD  285 (288)
Q Consensus       281 ~~~~d  285 (288)
                      +|+|+
T Consensus       274 ~~s~~  278 (402)
T 2aq5_A          274 FFDPD  278 (402)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            88876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.8e-32  Score=222.33  Aligned_cols=226  Identities=21%  Similarity=0.332  Sum_probs=199.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ..+...+.+|...|++++|+| ++.+|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++
T Consensus        76 ~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~  154 (340)
T 4aow_A           76 GIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL  154 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             ceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence            446778999999999999999 8889999999999999999999988888888899999999999999999999999999


Q ss_pred             EeCCCCcee-EEeccCCCCEEEEEEcCCC--CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          134 WDPSSGNLK-CTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       134 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      ||+...... .....|...+..++|++++  .++++++.|+.|++||+++++.+..+.+|..+|++++|+|++++|++|+
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            998766543 3345688899999998854  5788999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-------------cce
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-------------FQY  277 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-------------~~~  277 (288)
                      .||.|++||+++.+.+..+.    +...+.+++|+|++.++ +++.|+.|++||+.++..+..+             ..+
T Consensus       235 ~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          235 KDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             TTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             CCCeEEEEEeccCceeeeec----CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            99999999999999888887    45679999999987665 5567999999999998877665             346


Q ss_pred             EEEEEeec
Q 023018          278 TCVAYDLD  285 (288)
Q Consensus       278 ~~~~~~~d  285 (288)
                      .+++|+|+
T Consensus       310 ~~l~~s~d  317 (340)
T 4aow_A          310 TSLAWSAD  317 (340)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            78888876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-34  Score=247.50  Aligned_cols=229  Identities=11%  Similarity=0.040  Sum_probs=181.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCC-C-------cEEEE-------------------EeCCCeEEEEEccCCeee----Ee
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTD-A-------TLVAT-------------------GGGDDKGFFWRINQGDWA----SE  102 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~-~-------~~l~~-------------------~~~dg~i~iw~~~~~~~~----~~  102 (288)
                      .+....+. +.++|.+++|+|.. +       ++||+                   ++.|++|+||++.+++..    ..
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            34444554 67899999999943 1       56666                   457789999999876542    34


Q ss_pred             eccccCcEEEEEEecC------CCEEEEEeCCCeEEEEeCCCCce-----------eEEeccCCCCEEEEEEcCCCCEEE
Q 023018          103 IQGHKDSVSSLAFSMD------GQLLASGGLDGLVQIWDPSSGNL-----------KCTLEGPGGGVEWVSWHPRGHIVL  165 (288)
Q Consensus       103 ~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~l~  165 (288)
                      +..|.+.|.+++|+|+      +.+||+++.||+|++||+..+..           ...+.+|...|.+++|++. ..|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEE
Confidence            5667889999999996      56999999999999999987642           2367788899999999985 4899


Q ss_pred             EecCCCeEEEEECCcc-cEEEEeeccCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEE
Q 023018          166 AGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCG--DFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC  241 (288)
Q Consensus       166 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~--~~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  241 (288)
                      +|+.||+|++||++++ .+...+.+|..+|+++  .|+|++ .+|++|+.|++|+|||+++++....+.++. ....|.+
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-~~~~v~~  360 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-RGSNLVP  360 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC-SCCSCCC
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc-ccCcccc
Confidence            9999999999999976 4456688999999999  578887 899999999999999999887766665421 1134789


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          242 LTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      ++|+|++..|++++.|+.|++||+++++++..+    ..+.+++|+|+
T Consensus       361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            999999999999999999999999999876665    45777888775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.3e-33  Score=229.27  Aligned_cols=215  Identities=11%  Similarity=0.067  Sum_probs=187.3

Q ss_pred             eeEeecCCCCEEEEEEcCCCCc-EEEEEeCCCeEEEEEc-cCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           57 THIFSGHSDEVYSVACSPTDAT-LVATGGGDDKGFFWRI-NQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ...+.+|...|++++|+| ++. +|++|+.||.|++|++ .+++. ..+..  |...|.+++|+| +.+|++++.||.|+
T Consensus        49 ~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIE  125 (342)
T ss_dssp             EEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEE
T ss_pred             ceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEE
Confidence            566679999999999999 688 9999999999999999 77654 67778  999999999999 99999999999999


Q ss_pred             EEeCCC---------CceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc-cc--EEEEeeccCCCeEEEEEc
Q 023018          133 IWDPSS---------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AA--YLNMFSGHGSSVTCGDFT  200 (288)
Q Consensus       133 i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~~  200 (288)
                      +||+.+         ++.+..+. +...+.+++|+|++  +++++.++.|++||+++ +.  .......+...+.+++|+
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~  202 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             EEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence            999987         66666666 77889999999876  99999999999999988 54  333445678899999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCC------ceeEEEcCCCc------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          201 P-DGKTICTGSDDATLRVWNPKSG------ENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       201 p-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      | ++++|++++.+|.|++|++...      +....+..+..      |...|.+++|+|++++|++++.||.|++||+.+
T Consensus       203 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            9 9999999999999999999876      67777776421      244899999999999999999999999999999


Q ss_pred             CcEEEEecce
Q 023018          268 GKVCCLNFQY  277 (288)
Q Consensus       268 ~~~~~~~~~~  277 (288)
                      ++++..+..+
T Consensus       283 ~~~~~~~~~~  292 (342)
T 1yfq_A          283 RKKIKNFAKF  292 (342)
T ss_dssp             TEEEEECCCC
T ss_pred             HhHhhhhhcc
Confidence            9999888654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=229.47  Aligned_cols=210  Identities=28%  Similarity=0.368  Sum_probs=180.2

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC---CEEEEEeCCCeEEEEeCC
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG---QLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~  137 (288)
                      .+|...|++++|+|.++.+|++++.||.|++|++.+++....+. +...+.++.|+|.+   .++++++.+|.|++||+.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999777899999999999999999999888887 77889999999854   499999999999999999


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCccc-EEEEe---------------eccCCCeEEEEEc
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA-YLNMF---------------SGHGSSVTCGDFT  200 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~  200 (288)
                      +++.+..+..|...|.+++|+|+++ +|++++.||.|++||++++. .+..+               ..|...|.+++|+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            9999999999999999999999988 68999999999999998765 33333               5688899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCce-----------------------------------------------eEEEcCCC
Q 023018          201 PDGKTICTGSDDATLRVWNPKSGEN-----------------------------------------------IHVIRGHP  233 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~~~~-----------------------------------------------~~~~~~~~  233 (288)
                      |++++|++++.||.|++||+.+++.                                               +..+..  
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--  332 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--  332 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--
Confidence            9999999999999999999876542                                               222332  


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                       |...|.+++|+|++.+|++++.||.|++|++.+++.+...
T Consensus       333 -~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          333 -HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             -CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence             7789999999999999999999999999999999887654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=238.57  Aligned_cols=212  Identities=15%  Similarity=0.205  Sum_probs=182.5

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc---CCeeeEeecc------------ccCcEEEEE--EecCCCEEEE
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN---QGDWASEIQG------------HKDSVSSLA--FSMDGQLLAS  124 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~  124 (288)
                      +|..+|++++|+| ++.+|++|+.||.|++|++.   +++....+..            +...+.++.  +++++.+|++
T Consensus       109 ~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          109 DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence            5999999999999 88899999999999999995   4444333322            445666666  4578889999


Q ss_pred             EeCCCeEEEEeCCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCeEEEEEcC
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTP  201 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p  201 (288)
                      |+.||.|++||+++++.+..+..  |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|++++|+|
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  267 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ  267 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence            99999999999999999999987  78899999999999999999999999999999999988886 6788999997665


Q ss_pred             ----CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC-----------------------ccccCeEEEEEcCCCCEEEEE
Q 023018          202 ----DGKTICTGSDDATLRVWNPKSGENIHVIRGHP-----------------------YHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       202 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~  254 (288)
                          ++.+|++++.||.|++||+++++.+..+..+.                       .|...|++++|+ ++.+|++|
T Consensus       268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~  346 (437)
T 3gre_A          268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD  346 (437)
T ss_dssp             TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence                57799999999999999999999888877542                       156679999999 77899999


Q ss_pred             eCCCcEEEEEcCCCcEEEEec
Q 023018          255 SKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      +.||.|++||+.+++++..+.
T Consensus       347 ~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          347 EATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             GGGTEEEEEETTCGGGCEEEE
T ss_pred             CCCCeEEEEECCCcccceEEe
Confidence            999999999999998777653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.6e-32  Score=241.04  Aligned_cols=217  Identities=22%  Similarity=0.313  Sum_probs=197.0

Q ss_pred             CCeeEeecCCCC-EEEEEEcCC-CCcEEEEEeCCCeEEEEEccCC--------eeeEeeccccCcEEEEEEecCCCEEEE
Q 023018           55 DSTHIFSGHSDE-VYSVACSPT-DATLVATGGGDDKGFFWRINQG--------DWASEIQGHKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        55 ~~~~~~~~h~~~-v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~  124 (288)
                      .....+.+|... |++++|+|. ++.+|++|+.||.|++|++.++        +....+..|..+|.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            678899999999 999999993 4678999999999999999754        677778889999999999999999999


Q ss_pred             EeCC----CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCC---CeEE
Q 023018          125 GGLD----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTC  196 (288)
Q Consensus       125 ~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~  196 (288)
                      ++.+    +.|++||  .++.+..+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+..|..   .|++
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            9987    7899998  5677888899999999999999998 899999999999999999999999999999   9999


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          197 GDFTPD-GKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       197 ~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|+|+ +++|++++.||.|++||+.+++.+..+ .....|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+
T Consensus       212 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~  290 (615)
T 1pgu_A          212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKW  290 (615)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            999999 999999999999999999999988887 3111278899999999 9999999999999999999999988876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-33  Score=238.99  Aligned_cols=229  Identities=14%  Similarity=0.157  Sum_probs=183.4

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ....+.+|.++|++|+|+|.++.+|++|+.||+|++||+.+.........  +...+.+++|+|++.+|++|+.||.|++
T Consensus       156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~  235 (435)
T 4e54_B          156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL  235 (435)
T ss_dssp             EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred             eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence            34456789999999999997788999999999999999987654433332  3456789999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE---EeeccCCCeEEEEEcCCCCEEEEE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN---MFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      ||+.. +.+..+..|...|.+++|+|++. +|++|+.|+.|++||+++.+...   ...+|..+|++++|+|++.+|+++
T Consensus       236 wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          236 LNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             EESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             eccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence            99864 55667888999999999999876 78899999999999998865433   335689999999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCcc---ccCeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCcEEEEe
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYH---TEGLTCLTISADSTLALSGS------------KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.||.|+|||+.++.....+..+...   ...+..+.|+|++.++++++            .++.|++||+.+|+++..+
T Consensus       315 ~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999999999998877776553211   11233456777777766664            2357999999999999887


Q ss_pred             c-----ceEEE-EEeec
Q 023018          275 F-----QYTCV-AYDLD  285 (288)
Q Consensus       275 ~-----~~~~~-~~~~d  285 (288)
                      .     .+.++ +|+|+
T Consensus       395 ~~~~~~~v~s~~~fspd  411 (435)
T 4e54_B          395 YDPESSGISSLNEFNPM  411 (435)
T ss_dssp             CCSSCCCCCCEEEECTT
T ss_pred             eCCCCCcEEEEEEECCC
Confidence            3     23444 57775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-31  Score=228.73  Aligned_cols=221  Identities=24%  Similarity=0.479  Sum_probs=184.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .+....+.+|...|.+++|++   ..+++|+.||.|++||+.+++.+..+.+|...|.+++|  ++.+|++|+.||.|++
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            355667777888888888853   46778888888888888888888888888888888887  6677888888888888


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      ||+.+++.+..+..|...+.+++|  ++.++++++.||.|++||+++++.+..+..|...+.++.++  +++|++|+.||
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg  339 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  339 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCC
Confidence            888888888888888888888888  67889999999999999998888888888888888887774  67899999999


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---------cceEEEEEee
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---------FQYTCVAYDL  284 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---------~~~~~~~~~~  284 (288)
                      .|++||+++++.+..+..+..|...|.+++|+  +.+|++|+.||.|++||+.+++.+..+         ..+.+++|+|
T Consensus       340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence            99999999998888888766688899999996  579999999999999999999998877         3466777776


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       418 ~  418 (445)
T 2ovr_B          418 T  418 (445)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=244.00  Aligned_cols=206  Identities=18%  Similarity=0.270  Sum_probs=189.5

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCc-EEEEEEec--CCCEEEEEeCCCeEEEE
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDS-VSSLAFSM--DGQLLASGGLDGLVQIW  134 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~  134 (288)
                      .|.+.|++++|+| ++.+|++++ ++.|++|++.++    +....+.+|... |++++|+|  ++++|++++.||.|++|
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            6889999999999 778888887 789999999998    889999999999 99999999  99999999999999999


Q ss_pred             eCCCC--------ceeEEeccCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCcccEEEEeeccCCCeEEEEEcCC
Q 023018          135 DPSSG--------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       135 d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~  202 (288)
                      ++.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  .++.+..+..|...|.+++|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence            99754        6677788899999999999999999999987    6888888  56788889999999999999999


Q ss_pred             CC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          203 GK-TICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISAD-STLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       203 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +. .|++++.|+.|++||+.+++.+..+..   |..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBEEEEEECS---SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             CCcEEEEEeCCCcEEEEeCCCcceeeeecc---cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            88 899999999999999999998888887   556   8999999999 999999999999999999999999887

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-32  Score=232.87  Aligned_cols=218  Identities=22%  Similarity=0.484  Sum_probs=193.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..+....+.+|..+|++++|   ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++  .+|++|+.||.|+
T Consensus       162 ~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  236 (435)
T 1p22_A          162 TLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIA  236 (435)
T ss_dssp             SCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEE
T ss_pred             CCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEE
Confidence            45677889999999999999   456999999999999999999999999999999999999964  5999999999999


Q ss_pred             EEeCCCCcee---EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          133 IWDPSSGNLK---CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       133 i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +||+.++...   ..+.+|...|.+++|  +++++++|+.||.|++||+++++.+..+..|...|.++.|+  +.+|++|
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g  312 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG  312 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEE
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEE
Confidence            9999988655   567789999999999  67899999999999999999999999999999999999994  6899999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------EEEEec----c
Q 023018          210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK---------VCCLNF----Q  276 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~---------~~~~~~----~  276 (288)
                      +.||.|++||+++++.+..+..   |...|.+++|  ++.+|++|+.||.|++||+.+++         ++..+.    .
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~  387 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEG---HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR  387 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC---CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred             eCCCeEEEEECCCCCEEEEEeC---CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence            9999999999999999988887   7788999998  68899999999999999998776         677664    3


Q ss_pred             eEEEEEee
Q 023018          277 YTCVAYDL  284 (288)
Q Consensus       277 ~~~~~~~~  284 (288)
                      +.+++|..
T Consensus       388 v~~l~~~~  395 (435)
T 1p22_A          388 VFRLQFDE  395 (435)
T ss_dssp             CCCEEECS
T ss_pred             eEEEEeCC
Confidence            44555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=218.07  Aligned_cols=212  Identities=25%  Similarity=0.424  Sum_probs=178.2

Q ss_pred             CCCCeeEe--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee---------------------------
Q 023018           53 PDDSTHIF--SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---------------------------  103 (288)
Q Consensus        53 ~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------  103 (288)
                      ..+.++.+  .+|...|++++|+| ++++|++|+.||+|++|++.+++.+..+                           
T Consensus        54 tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~  132 (318)
T 4ggc_A           54 SGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  132 (318)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceE
Confidence            34555555  46888999999999 7889999999999999999887654433                           


Q ss_pred             --------------ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce----eEEeccCCCCEEEEEEcCCCC-E-
Q 023018          104 --------------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL----KCTLEGPGGGVEWVSWHPRGH-I-  163 (288)
Q Consensus       104 --------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~-  163 (288)
                                    .+|...+..+.+++++++|++++.||.|++||+.+++.    ......+.+.+.+++++|.+. . 
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  212 (318)
T 4ggc_A          133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  212 (318)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred             eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence                          34667788889999999999999999999999987653    344556778899999999655 3 


Q ss_pred             -EEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCCCccccCeE
Q 023018          164 -VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRGHPYHTEGLT  240 (288)
Q Consensus       164 -l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  240 (288)
                       +++++.++.|++||.+......... +...+..+.|+|.+..+++++  .|+.|++||+++++++..+.+   |...|+
T Consensus       213 ~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g---H~~~V~  288 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG---HTSRVL  288 (318)
T ss_dssp             EEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC---CSSCEE
T ss_pred             EEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC---CCCCEE
Confidence             3466788999999999887666554 677899999999999887765  789999999999999999987   788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          241 CLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +++|+|++.+|++|+.||+|+|||+....
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            99999999999999999999999997654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-31  Score=228.04  Aligned_cols=221  Identities=25%  Similarity=0.509  Sum_probs=199.5

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..+.+..+.+|..+|++++|++   .++++|+.||.|++|++.+++.+..+.+|...|.++.|+  +.+|++|+.||.|+
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~  222 (445)
T 2ovr_B          148 TGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR  222 (445)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             CCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence            4567788999999999999974   589999999999999999999999999999999999995  56899999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      +||+.+++.+..+..|...+.+++|  ++.++++|+.||.|++||+++++.+..+.+|...|.++.|  ++.++++++.|
T Consensus       223 ~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d  298 (445)
T 2ovr_B          223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD  298 (445)
T ss_dssp             EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred             EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence            9999999999999999999999999  6789999999999999999999999999999999999999  78899999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-------ceEEEEEeec
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF-------QYTCVAYDLD  285 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~-------~~~~~~~~~d  285 (288)
                      |.|++||+++++.+..+..   |...+.++.++  +.+|++|+.||.|++||+.+++++..+.       .+.+++|++.
T Consensus       299 ~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          299 TSIRVWDVETGNCIHTLTG---HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN  373 (445)
T ss_dssp             SCEEEEETTTCCEEEEECC---CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCCEEEEEcC---CcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCC
Confidence            9999999999999888876   66778887774  6799999999999999999999998874       3667777665


Q ss_pred             cc
Q 023018          286 FV  287 (288)
Q Consensus       286 f~  287 (288)
                      ++
T Consensus       374 ~l  375 (445)
T 2ovr_B          374 FV  375 (445)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=233.16  Aligned_cols=205  Identities=16%  Similarity=0.097  Sum_probs=177.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe---eeEeecc------------------------------------
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQG------------------------------------  105 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------  105 (288)
                      .++.+++|+| ++.+|+++ .++.|++|++.+++   .+..+..                                    
T Consensus         5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            5789999999 66666655 46899999999888   5555442                                    


Q ss_pred             ------------------ccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCC--CCceeEEec--cCCCCEEEEEEcCCCC
Q 023018          106 ------------------HKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPS--SGNLKCTLE--GPGGGVEWVSWHPRGH  162 (288)
Q Consensus       106 ------------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~  162 (288)
                                        |...|++++|+|++++| ++|+.||.|++|++.  +++.+..+.  .+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              33369999999999986 889999999999999  888887776  5668899999999999


Q ss_pred             EEEEecCCCeEEEEECCcccEEE----EeeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc
Q 023018          163 IVLAGSEDSTVWMWNADRAAYLN----MFSGHGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENIHVIRGHPYH  235 (288)
Q Consensus       163 ~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  235 (288)
                      +|++|+.+|.|++|++.++....    .+.+|...|++++|+|+   +++|++++.|+.|++||++++..+..+...  |
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--h  240 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG--H  240 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC--C
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC--C
Confidence            99999999999999998876544    77889999999999999   999999999999999999998887764321  7


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ...|.+++|+ ++.+|++++.|+.|++||+.+++++..+
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~  278 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF  278 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence            8899999999 9999999999999999999999988876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-31  Score=227.84  Aligned_cols=214  Identities=27%  Similarity=0.501  Sum_probs=189.7

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      .....+|...|+++++   ++.++++|+.||.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++||+
T Consensus       126 ~~~~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             EECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EecccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            3444567788999987   5679999999999999999999999999999999999998  7889999999999999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE---EEeeccCCCeEEEEEcCCCCEEEEEeCCC
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGSDDA  213 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~p~~~~l~~~~~dg  213 (288)
                      .+++.+..+..|...|.+++|++  ..+++|+.||.|++||++++...   ..+.+|...|.+++|  ++++|++|+.||
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg  276 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR  276 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            99999999999999999999974  59999999999999999887654   667789999999999  688999999999


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc----eEEEEEee
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ----YTCVAYDL  284 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~----~~~~~~~~  284 (288)
                      .|++||+++++.+..+..   |...|.++.|+  +.+|++|+.||.|++||+++++++..+..    +.+++|..
T Consensus       277 ~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  346 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNG---HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN  346 (435)
T ss_dssp             EEEEEETTTCCEEEEEEC---CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS
T ss_pred             eEEEEECCcCcEEEEEcC---CCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecC
Confidence            999999999999888886   77889999984  67999999999999999999999998844    45555543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-31  Score=254.65  Aligned_cols=212  Identities=23%  Similarity=0.386  Sum_probs=193.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec--CCCEEEEEeCCC
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDG  129 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg  129 (288)
                      .....+..+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|  ++.++++|+.||
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             CCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence            34567888999999999999999 788999999999999999999999999999999999999999  455899999999


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe----------------------
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF----------------------  187 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------  187 (288)
                      .|++||+.+++....+.+|.+.|.+++|+|+++++++++.||.|++||+++++....+                      
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            9999999999999999999999999999999999999999999999999776543322                      


Q ss_pred             ---------------------------------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc
Q 023018          188 ---------------------------------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY  234 (288)
Q Consensus       188 ---------------------------------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  234 (288)
                                                       .+|...+.+++|+|++.++++++.+|.|++||+.++..+..+.+   
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---  880 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG---  880 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC---
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC---
Confidence                                             15677899999999999999999999999999999988888876   


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      |...|.+++|+|++.+|++++.||.|++|++.+
T Consensus       881 h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            788999999999999999999999999999764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-33  Score=228.36  Aligned_cols=202  Identities=8%  Similarity=0.034  Sum_probs=165.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc---------CCeeeEeec-cccCcEEEEEEec--CCCEEEEEeCCCeE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRIN---------QGDWASEIQ-GHKDSVSSLAFSM--DGQLLASGGLDGLV  131 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i  131 (288)
                      ...|.++.|+| .   +++++.|++|++|+..         +++.+..+. .|..+|.+++|+|  ++++|++++.||.|
T Consensus        76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence            35677788888 3   8899999999999765         444344443 5678999999999  99999999999999


Q ss_pred             EEEeCCCCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE-EEeec-cCCCeEEEEEcCCCCEEEE
Q 023018          132 QIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSG-HGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~p~~~~l~~  208 (288)
                      ++||+.+++....+.. +...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|++++|+|++.+|++
T Consensus       152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             EEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            9999999988766643 4557999999999999999999999999999999877 77887 9999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCe--EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcE
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGL--TCLTISADSTLALSGSK-DGSVHMVNITTGKV  270 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~  270 (288)
                      ++ ++.|++||+++++.+..+.....+...+  .+++|+|++++|++++. |+.|++|++.++..
T Consensus       232 ~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          232 EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            99 5599999999887665544322222333  46999999999999988 99999999976543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-33  Score=250.45  Aligned_cols=216  Identities=19%  Similarity=0.285  Sum_probs=188.0

Q ss_pred             CCCeeEeecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecC--CCEEEEEeCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMD--GQLLASGGLD  128 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d  128 (288)
                      ......+.+|.++|++++|+|. ++.+|++|+.||.|++|++.+++  .+..+..|...|++++|+|+  +.+|++|+.|
T Consensus        43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            4567788999999999999983 28899999999999999999987  67778889999999999999  9999999999


Q ss_pred             CeEEEEeCCCC--ceeEEeccCCCCEEEEEEcC-------------CCCEEEEecCCCeEEEEECCcc----cEEEEeec
Q 023018          129 GLVQIWDPSSG--NLKCTLEGPGGGVEWVSWHP-------------RGHIVLAGSEDSTVWMWNADRA----AYLNMFSG  189 (288)
Q Consensus       129 g~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~  189 (288)
                      |.|++||+.++  .....+..|...|.+++|+|             ++..+++|+.||.|++||++++    .....+.+
T Consensus       123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~  202 (753)
T 3jro_A          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (753)
T ss_dssp             SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence            99999999877  34455677889999999999             4899999999999999999876    56677888


Q ss_pred             cCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          190 HGSSVTCGDFTPD---GKTICTGSDDATLRVWNPKSGENI--HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       190 ~~~~i~~~~~~p~---~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      |..+|++++|+|+   +.+|++++.||.|++||++++...  ..+.....+...|++++|+|++.+|++++.||.|++|+
T Consensus       203 h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            9999999999999   899999999999999999876421  12222233778899999999999999999999999999


Q ss_pred             cCCCc
Q 023018          265 ITTGK  269 (288)
Q Consensus       265 ~~t~~  269 (288)
                      +.++.
T Consensus       283 ~~~~~  287 (753)
T 3jro_A          283 ENLEG  287 (753)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            98643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.8e-32  Score=218.25  Aligned_cols=176  Identities=14%  Similarity=0.196  Sum_probs=143.6

Q ss_pred             CCeEEEEEc-cCCeeeEeeccccCcEEEEEEec---CCCEEEEEeCCCeEEEEeCCCCceeEEeccCC---CCEEEEEEc
Q 023018           86 DDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG---GGVEWVSWH  158 (288)
Q Consensus        86 dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~  158 (288)
                      |+.|++|++ .+++.+..+..|...++.++|++   ++.+|++++.|++|+|||+.+++.++.+.+|.   ..+.+++|+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            788888888 44777777778888888888888   66899999999999999999999999998644   357788999


Q ss_pred             CCCCEE------------EEecCCCeEEEEECCcccEEEEe-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018          159 PRGHIV------------LAGSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       159 ~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~  221 (288)
                      |++.++            ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++++.|++|+|||+.
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~  313 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL  313 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence            999876            56778999999999999887665     2555555544444  7889999999999999999


Q ss_pred             CCceeEEEcCCCccccC-eEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          222 SGENIHVIRGHPYHTEG-LTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       222 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +++.+.++.+   |... +..++|+|+|++|++|+.|++|+|||+.
T Consensus       314 tGk~l~tL~g---H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          314 LGQCTALLPP---VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TCSEEEEECC---C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCcEEEEecC---CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            9999999986   4444 4468999999999999999999999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.7e-32  Score=224.83  Aligned_cols=173  Identities=20%  Similarity=0.233  Sum_probs=143.8

Q ss_pred             cEEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-
Q 023018          109 SVSSLAFSMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-  185 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-  185 (288)
                      .+.+++|+|+|+++++++  .|++|+|||+.+++.+..+. |.+.|.+++|+|+|+++++++. +.+++|+..++..+. 
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceee
Confidence            467899999999877554  68999999999999888876 6678999999999999999986 456667666666543 


Q ss_pred             -EeeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcee----EEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018          186 -MFSGHGSSVTCGDFTPDGKTICTGSDDA----TLRVWNPKSGENI----HVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       186 -~~~~~~~~i~~~~~~p~~~~l~~~~~dg----~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                       ....|...|++++|+|++.++++++.++    .+++|++......    ..+..   |..+|++++|+|+|++|++|+.
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN---RFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES---SCSCEEEEEECTTSCEEEEEET
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC---CCCCeEeEEECCCCCceEEEcC
Confidence             3446788999999999999999999887    6888998766432    23333   7788999999999999999999


Q ss_pred             CCcEEEEEcCCCcEEEEe-----cceEEEEEeecc
Q 023018          257 DGSVHMVNITTGKVCCLN-----FQYTCVAYDLDF  286 (288)
Q Consensus       257 dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~df  286 (288)
                      |+.|+|||+.+++++..+     ..+.+++|+||-
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            999999999999999875     457889999873

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.7e-31  Score=220.76  Aligned_cols=209  Identities=12%  Similarity=0.118  Sum_probs=165.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  132 (288)
                      ..++..+.+|..+|++++|+| ++.+||+|+.+| +++|++.+.+......  ...+..+++.++++.+ ++++.+++|+
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~   84 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred             cCCccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEE
Confidence            345566789999999999999 788999988765 7899998876655543  2357788888888877 5677889999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCC-----------------------------------CEEEE--ecCCCeEEE
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRG-----------------------------------HIVLA--GSEDSTVWM  175 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~dg~i~i  175 (288)
                      +||+.+++.+..+. +...|.+++|+++.                                   ..+++  |+.+|.|++
T Consensus        85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           85 IWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             EEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             EEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            99999999888876 45578888887642                                   23344  578899999


Q ss_pred             EECCccc---------------E-EEEeeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeEEEc-CCCcccc
Q 023018          176 WNADRAA---------------Y-LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIR-GHPYHTE  237 (288)
Q Consensus       176 ~d~~~~~---------------~-~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~~~~~~~  237 (288)
                      ||++++.               + +..+.+|..+|++++|+|++++|++|+.|++ |++||+++++.+..+. +.  |..
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~--h~~  241 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL--DRA  241 (355)
T ss_dssp             EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT--CCS
T ss_pred             EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CCC
Confidence            9998765               2 6778899999999999999999999999998 9999999999988887 32  668


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      .|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            89999999999999999999999999998653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.4e-32  Score=230.17  Aligned_cols=211  Identities=15%  Similarity=0.132  Sum_probs=160.2

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeee-----EeeccccCcEEEEEEec--------CCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSM--------DGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +..++|+++.|++|+||+..++...     ..+.+|.+.|++++|+|        ++++||+|+.|++|+|||+.++...
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            6678999999999999999987643     34678999999999998        7889999999999999999988888


Q ss_pred             EEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEE-------------------------eeccCCCeEE
Q 023018          143 CTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM-------------------------FSGHGSSVTC  196 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~~~i~~  196 (288)
                      ..+..|...+.+++|+|++. +|++++.||+|++||+++++....                         ..+|...+.+
T Consensus       180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~  259 (393)
T 4gq1_A          180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN  259 (393)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred             eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence            88888899999999999874 899999999999999987654322                         1346678888


Q ss_pred             EEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---------------cccCeEEEEEcC--CCCEEEEEeCCC
Q 023018          197 GDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTCLTISA--DSTLALSGSKDG  258 (288)
Q Consensus       197 ~~~~-p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~--~~~~l~~~~~dg  258 (288)
                      +.|+ |++..|++++.|+.+++||+.+++....+..+..               .........|+|  ++.++++|+.||
T Consensus       260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg  339 (393)
T 4gq1_A          260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG  339 (393)
T ss_dssp             EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred             eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence            9887 7999999999999999999987765554433210               001112233444  445677888999


Q ss_pred             cEEEEEcCCCcEEEEe----cceEEEEEeecc
Q 023018          259 SVHMVNITTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      .|++||+.+++++..+    ..+.+++|+||-
T Consensus       340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             EEEEEETTCTTCCEEEEECSSCEEEEEECTTS
T ss_pred             EEEEEECCCCcEEEEecCCCCcEEEEEEcCCC
Confidence            9999999999887765    567888998873

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.3e-30  Score=209.61  Aligned_cols=228  Identities=21%  Similarity=0.327  Sum_probs=183.2

Q ss_pred             CCCCCCeeEeecC--CC--CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEE
Q 023018           51 EQPDDSTHIFSGH--SD--EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        51 ~~~~~~~~~~~~h--~~--~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  124 (288)
                      -.|..|.++|.+.  .+  .+.+|+|++ ++ +||+|. |++|+|||+.+++.+..+.  .|...|++++|+|++++|++
T Consensus         8 ~~p~~p~rvldap~~~~d~y~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s   84 (318)
T 4ggc_A            8 YIPSLPDRILDAPEIRNDYYLNLVDWSS-GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV   84 (318)
T ss_dssp             CCCSSCSEEEECTTCCCCTTCBCEEECT-TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred             ccCCCCCEEeeCCCCcccccceEEEECC-CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence            4556677777643  22  257899998 44 777765 8999999999998877664  57788999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEec-----------------------------------------cCCCCEEEEEEcCCCCE
Q 023018          125 GGLDGLVQIWDPSSGNLKCTLE-----------------------------------------GPGGGVEWVSWHPRGHI  163 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~~~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~~  163 (288)
                      |+.||+|++|++.+++.+..+.                                         .|...+..+.+++++++
T Consensus        85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH  164 (318)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE
Confidence            9999999999999877655443                                         34556788889999999


Q ss_pred             EEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCCCE-E--EEEeCCCeEEEEeCCCCceeEEEcCCCccc
Q 023018          164 VLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKT-I--CTGSDDATLRVWNPKSGENIHVIRGHPYHT  236 (288)
Q Consensus       164 l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~~~-l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  236 (288)
                      |++++.||.|++||+++++.    ......+...|.++.++|.+.. +  ++++.++.|++||...........    +.
T Consensus       165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----~~  240 (318)
T 4ggc_A          165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AH  240 (318)
T ss_dssp             EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE----CS
T ss_pred             EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc----ce
Confidence            99999999999999987653    3445567889999999996553 3  356678999999999887766665    56


Q ss_pred             cCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018          237 EGLTCLTISADSTLALSGS--KDGSVHMVNITTGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d  285 (288)
                      ..+..+.|+|++..+++++  .||.|++||+.+++++..+.    .+.+++|+|+
T Consensus       241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd  295 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  295 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            7799999999988877654  79999999999999999984    4667777765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.6e-31  Score=220.85  Aligned_cols=204  Identities=17%  Similarity=0.215  Sum_probs=172.5

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEE--ecCCCEEEEEeCCCeEEEEe
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ..+.+|..+|++++|+| ++.+|++++.||.|++|++.+++.+. +..|...|.+++|  +|++.+|++++.||.|++||
T Consensus        80 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            78899999999999999 88899999999999999999988776 4559999999999  88999999999999999999


Q ss_pred             CCCCceeEEeccCC-----------------------------------------CCEEEEEEcCCCCE----EEEecCC
Q 023018          136 PSSGNLKCTLEGPG-----------------------------------------GGVEWVSWHPRGHI----VLAGSED  170 (288)
Q Consensus       136 ~~~~~~~~~~~~~~-----------------------------------------~~i~~~~~~~~~~~----l~~~~~d  170 (288)
                      +.+++.+..+..+.                                         ..+.++++.+....    +++++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          158 TRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             SSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            99887766655432                                         22344444443332    9999999


Q ss_pred             CeEEEEECCcc---cEEEEeeccCC------------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc
Q 023018          171 STVWMWNADRA---AYLNMFSGHGS------------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH  235 (288)
Q Consensus       171 g~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  235 (288)
                      |.|++|+++..   ..+..+..|..            +|++++|+|++++|++++.||.|++||+.+++.+..+..   |
T Consensus       238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~  314 (368)
T 3mmy_A          238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ---L  314 (368)
T ss_dssp             SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC---C
T ss_pred             CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC---C
Confidence            99999999876   55666776665            799999999999999999999999999999998888876   7


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          236 TEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ..+|.+++|+|++.+|++++.|+..+.|++.
T Consensus       315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          315 DQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             SSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             CCCceEEEECCCCCeEEEEeccccccccccc
Confidence            8899999999999999999998765555543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=8e-30  Score=216.56  Aligned_cols=227  Identities=21%  Similarity=0.328  Sum_probs=179.1

Q ss_pred             CCCCCeeEeecCC----CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEE
Q 023018           52 QPDDSTHIFSGHS----DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        52 ~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      .+..|.++|....    -.+..|+|++ + ++||+|. |++|+|||..+++....+.  +|...|++++|+|++++|++|
T Consensus        89 i~~~p~~~l~ap~~~~d~y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg  165 (420)
T 4gga_A           89 IPSLPDRILDAPEIRNDYYLNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG  165 (420)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEEECCCCcccccceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE
Confidence            3445555555432    1367799997 4 4777765 8999999999998777654  577889999999999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccC-----------------------------------------CCCEEEEEEcCCCCEE
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGP-----------------------------------------GGGVEWVSWHPRGHIV  164 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~-----------------------------------------~~~i~~~~~~~~~~~l  164 (288)
                      +.||.|+|||+.+++.+..+.+|                                         ...+..+.|+|++.++
T Consensus       166 s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCee
Confidence            99999999999887766555443                                         4456666777777788


Q ss_pred             EEecCCCeEEEEECCccc----EEEEeeccCCCeEEEEEcCCC-CEEEEE--eCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018          165 LAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDG-KTICTG--SDDATLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       165 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~p~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      ++++.|+.+++|+..+++    .+.....|...|.+++|+|.+ ..++++  +.|+.|++||+.++.....+.    ...
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~  321 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----AHS  321 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE----CSS
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec----ccc
Confidence            888888888888876653    345566788999999999954 455554  479999999999999888887    446


Q ss_pred             CeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018          238 GLTCLTISADSTLALSGS--KDGSVHMVNITTGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d  285 (288)
                      .+.++.|+|++..|++++  .||.|++||+.+++++..+.    .+.+++|+||
T Consensus       322 ~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd  375 (420)
T 4gga_A          322 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  375 (420)
T ss_dssp             CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            789999999998888765  68999999999999999984    4677777776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-31  Score=224.93  Aligned_cols=192  Identities=12%  Similarity=0.130  Sum_probs=164.4

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC-----cEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-----SVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      +|...|.+++|+| ++.+||+++.||.|++|+...  .+..+. |..     .+.+++|+|+|++||+|+.||+|+||++
T Consensus        83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence            5588999999999 889999999999999999544  666666 665     4999999999999999999999999999


Q ss_pred             CCCce-------eEEe----ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE---EEEee-ccCCCeEEEEEcC
Q 023018          137 SSGNL-------KCTL----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---LNMFS-GHGSSVTCGDFTP  201 (288)
Q Consensus       137 ~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~-~~~~~i~~~~~~p  201 (288)
                      .+++.       +..+    .+|...|.+++|+|+|  +++++.|+.|++|++..+..   ..++. +|...|.+++|+ 
T Consensus       159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            98863       5665    5677899999999998  88889999999999988763   34563 688899999999 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE--cCCCCEEEEEeCCCcEEEEEcC
Q 023018          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                       +++|++++ ++.|++||+.+++......+   |...+..+.|  +|++..|++++.+|. ++|.+.
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~g---h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTG---SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECS---CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcC---CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             68999887 69999999987766333334   7889999999  999999999999999 999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-32  Score=223.13  Aligned_cols=202  Identities=11%  Similarity=0.064  Sum_probs=168.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC---------CCceeEEec
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS---------SGNLKCTLE  146 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~  146 (288)
                      ++.++++|+.||.|++||+.+++.+..+.  ...|.++.|+|.   +++++.|++|++|+..         +++.+..+.
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            66789999999999999999998888776  456778888887   9999999999999665         455444444


Q ss_pred             -cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          147 -GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       147 -~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                       .|...|.+++|+|  +++++++++.||.|++||+++++.+..... +...+++++|+|++.+|++|+.||.|++||+++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence             5667899999999  999999999999999999999988766643 455899999999999999999999999999999


Q ss_pred             Ccee-EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-------e--EEEEEeec
Q 023018          223 GENI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQ-------Y--TCVAYDLD  285 (288)
Q Consensus       223 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~-------~--~~~~~~~d  285 (288)
                      ++.+ ..+..  .|..+|++++|+|++.+|++++ ++.|++||+++++.+..+..       +  .+++|+|+
T Consensus       202 ~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          202 PDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             TTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             CCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9877 66654  2678999999999999999999 55999999999887654422       1  24777765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-31  Score=225.39  Aligned_cols=211  Identities=14%  Similarity=0.149  Sum_probs=166.8

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----------------------------eeEeec-cccCcEE
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------------------------WASEIQ-GHKDSVS  111 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------------------------~~~~~~-~~~~~i~  111 (288)
                      .-...|.+++|+| +++++|+++.|++|+  +...++                             ....+. .|...|.
T Consensus        13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             HhhccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence            4456788999999 888999999998885  332221                             111222 3578899


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCC-----CEEEEEEcCCCCEEEEecCCCeEEEEECCccc----
Q 023018          112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-----GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----  182 (288)
Q Consensus       112 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----  182 (288)
                      +++|+|+|.+||+++.||.|++|+...  .+..+. |..     .+.+++|+|+|++|++|+.||+|++||+.++.    
T Consensus        90 ~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           90 VCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            999999999999999999999999544  555566 554     49999999999999999999999999999875    


Q ss_pred             ---EEEEe----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          183 ---YLNMF----SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       183 ---~~~~~----~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                         .+.++    .+|...|.+++|+|+|  +++++.|+.|++||+.++..   ...+...  |...|.+++|+  ++.|+
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~--h~~~V~svaFs--g~~LA  240 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA--SRRKITDLKIV--DYKVV  240 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC--CSSCCCCEEEE--TTEEE
T ss_pred             cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc--ccCcEEEEEEE--CCEEE
Confidence               35666    5677899999999998  88889999999999987763   2455322  66889999999  68888


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEe----cceEEEEE--eec
Q 023018          253 SGSKDGSVHMVNITTGKVCCLN----FQYTCVAY--DLD  285 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~--~~d  285 (288)
                      +++ ++.|++||+.+++.....    ..+..++|  +|+
T Consensus       241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSS
T ss_pred             EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCC
Confidence            887 699999999998884444    34555666  655

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-31  Score=224.92  Aligned_cols=206  Identities=15%  Similarity=0.113  Sum_probs=154.6

Q ss_pred             eeEeecCCCCEEEEEEcC-------CCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCC
Q 023018           57 THIFSGHSDEVYSVACSP-------TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLD  128 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  128 (288)
                      ...+.||.+.|++++|+|       .++++||+|+.|++|+|||+.++..+..+..|..++.+++|+|++. +|++|+.|
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            345789999999999987       2578999999999999999999888888888999999999999875 79999999


Q ss_pred             CeEEEEeCCCCceeEEe-------------------------ccCCCCEEEEEEc-CCCCEEEEecCCCeEEEEECCccc
Q 023018          129 GLVQIWDPSSGNLKCTL-------------------------EGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRAA  182 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  182 (288)
                      |+|++||+.+++.....                         .+|...+.++.|+ |+++.|++++.|+++++||+..++
T Consensus       209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~  288 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN  288 (393)
T ss_dssp             SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred             CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence            99999999887543321                         2456678888887 699999999999999999998876


Q ss_pred             EEEEeeccCCCeEEE------------------EEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018          183 YLNMFSGHGSSVTCG------------------DFTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (288)
Q Consensus       183 ~~~~~~~~~~~i~~~------------------~~~p--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (288)
                      ....+..|...+..+                  .|+|  ++.++++|+.||.|++||+.+++....+..   |..+|.++
T Consensus       289 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~---~~~~V~sv  365 (393)
T 4gq1_A          289 DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ---LGMPIVDF  365 (393)
T ss_dssp             ---------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE---CSSCEEEE
T ss_pred             CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC---CCCcEEEE
Confidence            665555444433333                  2333  334567788899999999999988777665   67799999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          243 TISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       243 ~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      +|+|+|++|++++.+| +.+|.+.
T Consensus       366 afspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          366 CWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999998665 6666653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.7e-31  Score=245.85  Aligned_cols=222  Identities=15%  Similarity=0.202  Sum_probs=177.6

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee----Ee--ec-----cccCcEEEEEEecCCCEEEEEeC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE--IQ-----GHKDSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~--~~-----~~~~~i~~~~~~~~~~~l~~~~~  127 (288)
                      .+.+|...+..++|+| ++.+||+|+.||+|++||+.++...    ..  +.     +|...|++++|+|++++||+|+.
T Consensus       430 ~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~  508 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE  508 (902)
T ss_dssp             SCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred             cccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence            4566777777777888 7889999999999999999876421    11  11     68899999999999999999999


Q ss_pred             CCeEEEEeCCCCc---------------------------------------------eeEEeccCCCCEEEEEEcCCCC
Q 023018          128 DGLVQIWDPSSGN---------------------------------------------LKCTLEGPGGGVEWVSWHPRGH  162 (288)
Q Consensus       128 dg~i~i~d~~~~~---------------------------------------------~~~~~~~~~~~i~~~~~~~~~~  162 (288)
                      ||+|+||++.+++                                             ++..+.+|.+.|++++|+|+| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence            9999999987662                                             356778899999999999999 


Q ss_pred             EEEEecCCCeEEEEECCcccEEE-----Eee-ccCCCeEEEEEc-----CCC---CEEEEEeCCCeEEEEeC---CCCce
Q 023018          163 IVLAGSEDSTVWMWNADRAAYLN-----MFS-GHGSSVTCGDFT-----PDG---KTICTGSDDATLRVWNP---KSGEN  225 (288)
Q Consensus       163 ~l~~~~~dg~i~i~d~~~~~~~~-----~~~-~~~~~i~~~~~~-----p~~---~~l~~~~~dg~i~i~d~---~~~~~  225 (288)
                      +||+|+.|++|++||++++..+.     .+. +|...|++++|+     |||   .+|++|+.|++|++||+   .+|+.
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            99999999999999998876653     233 788899999999     885   89999999999999999   77877


Q ss_pred             eEEEcCCCc--cccCeEEEE-Ec----------------------CCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEE
Q 023018          226 IHVIRGHPY--HTEGLTCLT-IS----------------------ADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV  280 (288)
Q Consensus       226 ~~~~~~~~~--~~~~v~~~~-~~----------------------~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~  280 (288)
                      ...+.++..  +..+|..+. |+                      +++.+|+++  +..|++|++.+++++++...+.+.
T Consensus       668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~  745 (902)
T 2oaj_A          668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLA  745 (902)
T ss_dssp             EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEE
T ss_pred             EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEccccee
Confidence            777765421  246676665 65                      344444433  778999999999999887555555


Q ss_pred             EEee
Q 023018          281 AYDL  284 (288)
Q Consensus       281 ~~~~  284 (288)
                      ..+.
T Consensus       746 ~~~v  749 (902)
T 2oaj_A          746 ATGL  749 (902)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            4443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=7.6e-29  Score=208.28  Aligned_cols=224  Identities=17%  Similarity=0.167  Sum_probs=187.2

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~  132 (288)
                      .+....+.+|. .+.+++|+|++..++++++.++.|++||+.+++.+..+..+. .+.+++|+|++++|+++ +.++.|+
T Consensus        22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence            34556677665 489999999444455788899999999999999988887554 89999999999987655 4679999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE-EEEe
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGS  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~~~~  210 (288)
                      +||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++
T Consensus       100 v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A          100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF  177 (391)
T ss_dssp             EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC
Confidence            9999999888887755 468999999999977 67888999999999999888888755 557999999999987 5677


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcEEEEe---cceEEEEEee
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNITTGKVCCLN---FQYTCVAYDL  284 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~  284 (288)
                      .++.|++||+++++....+.    +...+.+++|+|++++|++++   .++.|++||+.+++++..+   ..+.+++|+|
T Consensus       178 ~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~  253 (391)
T 1l0q_A          178 DSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP  253 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             CCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEcc
Confidence            88999999999998877776    445789999999999998887   6899999999999988877   3456777876


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      +
T Consensus       254 d  254 (391)
T 1l0q_A          254 D  254 (391)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=9.8e-29  Score=210.33  Aligned_cols=220  Identities=10%  Similarity=0.046  Sum_probs=189.8

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPS  137 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~  137 (288)
                      .+.+|...|.+++|+| ++.++++++.|+.|++|++.+++.+..+..|...+.+++|+|++++++++ +.++.|++||+.
T Consensus       164 ~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          164 KYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             HHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            4458899999999998 88899999999999999999999999998899999999999999987554 479999999999


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEec--------CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE-EE
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CT  208 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l-~~  208 (288)
                      +++.+..+..+ ..+.+++|+|+++.+++++        .||.|++||+++++.+..+. +...+.+++|+|+++.+ ++
T Consensus       243 ~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~  320 (433)
T 3bws_A          243 TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVS  320 (433)
T ss_dssp             TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEE
T ss_pred             CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEE
Confidence            99888877754 4599999999999999888        58899999999988776653 55688999999999765 56


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEEcCCCcEEEE
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---------------DGSVHMVNITTGKVCCL  273 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~t~~~~~~  273 (288)
                      ++.++.|++||+.+++....+.    +...+.+++|+|++++|++++.               ||.|++||+.+++.+..
T Consensus       321 ~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          321 DMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred             ecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence            6889999999999988877776    4577899999999998888876               57999999999998887


Q ss_pred             e---cceEEEEEeec
Q 023018          274 N---FQYTCVAYDLD  285 (288)
Q Consensus       274 ~---~~~~~~~~~~d  285 (288)
                      +   ..+.+++|+|+
T Consensus       397 ~~~~~~~~~~~~s~d  411 (433)
T 3bws_A          397 WEAGNQPTGLDVSPD  411 (433)
T ss_dssp             EECSSSEEEEEECTT
T ss_pred             ecCCCCCceEEEcCC
Confidence            7   45678888776

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.1e-29  Score=205.53  Aligned_cols=202  Identities=16%  Similarity=0.180  Sum_probs=163.2

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCC--------------------------
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--------------------------  119 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------------  119 (288)
                      .+..+++.+....++++++.|++|++||+.+++.+..+. +...|.+++|+++.                          
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence            577888888555555678888999999999999888887 66788888887642                          


Q ss_pred             ---------CEEEE--EeCCCeEEEEeCCCCc----------------eeEEeccCCCCEEEEEEcCCCCEEEEecCCCe
Q 023018          120 ---------QLLAS--GGLDGLVQIWDPSSGN----------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST  172 (288)
Q Consensus       120 ---------~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  172 (288)
                               .++++  |+.+|.|++||+.+++                .+..+.+|...|.+++|+|++++|++|+.||+
T Consensus       139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence                     23444  4678999999998765                26778899999999999999999999999998


Q ss_pred             -EEEEECCcccEEEEee-c-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcC----------------
Q 023018          173 -VWMWNADRAAYLNMFS-G-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIRG----------------  231 (288)
Q Consensus       173 -i~i~d~~~~~~~~~~~-~-~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~----------------  231 (288)
                       |++||+++++++..+. + |...|++++|+|++++|++++.|+.|++||++.+..  ...+..                
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence             9999999999999998 5 999999999999999999999999999999976531  111110                


Q ss_pred             --CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          232 --HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       232 --~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                        ..........++|++++..|++++.||.+++|++..+
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence              1111223467899999999999999999999998753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.2e-28  Score=209.78  Aligned_cols=223  Identities=13%  Similarity=0.069  Sum_probs=190.3

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE-----eeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-----EIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      .+..+..+. .+.+++|+| ++.++++++.++.|++||+.+++...     .+.+|...|.+++|++++.++++++.++.
T Consensus       115 ~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          115 FISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             EEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            444455444 456999999 88899999999999999999988776     44578889999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      |++||+.+++.+..+..+...+.+++|+|+++.++ +++.++.|++||+++++.+..+.. ...+.+++|+|++++|+++
T Consensus       193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence            99999999999988888888999999999999775 555799999999999988887775 4568999999999999988


Q ss_pred             e--------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEe---cce
Q 023018          210 S--------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVCCLN---FQY  277 (288)
Q Consensus       210 ~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~t~~~~~~~---~~~  277 (288)
                      +        .||.|++||+.+++....+.    +...+.+++|+|+++.| ++++.++.|++||+.+++++..+   ..+
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence            8        48899999999988777664    55678999999999654 66688999999999999988776   457


Q ss_pred             EEEEEeec
Q 023018          278 TCVAYDLD  285 (288)
Q Consensus       278 ~~~~~~~d  285 (288)
                      .+++|+|+
T Consensus       348 ~~~~~s~d  355 (433)
T 3bws_A          348 NTIALSPD  355 (433)
T ss_dssp             EEEEECTT
T ss_pred             CeEEEcCC
Confidence            78888876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1e-28  Score=203.31  Aligned_cols=168  Identities=21%  Similarity=0.378  Sum_probs=146.2

Q ss_pred             EeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeEEeccCCCCEEEEEEcC--CCCEEEEecCCCeEE
Q 023018          101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVW  174 (288)
Q Consensus       101 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~  174 (288)
                      ..+.+|...|++++|+|++++|++|+.||.|++|++.++    +....+..|...|.+++|+|  ++++|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789999999999999999999999999999999876    45667788999999999999  599999999999999


Q ss_pred             EEECCcc---------cEEEEeeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeE----------------
Q 023018          175 MWNADRA---------AYLNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIH----------------  227 (288)
Q Consensus       175 i~d~~~~---------~~~~~~~~~~~~i~~~~~~p~--~~~l~~~~~dg~i~i~d~~~~~~~~----------------  227 (288)
                      +||++++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+++++.+.                
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999876         567788889999999999999  9999999999999999987654211                


Q ss_pred             -----------------------------------------EEcCCCccccCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 023018          228 -----------------------------------------VIRGHPYHTEGLTCLTISADS----TLALSGSKDGSVHM  262 (288)
Q Consensus       228 -----------------------------------------~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i  262 (288)
                                                               .+.....|...|++++|+|++    .+|++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                     011122377889999999998    89999999999999


Q ss_pred             EEcCCC
Q 023018          263 VNITTG  268 (288)
Q Consensus       263 wd~~t~  268 (288)
                      ||++++
T Consensus       245 wd~~~~  250 (351)
T 3f3f_A          245 FKITEK  250 (351)
T ss_dssp             EEEEEC
T ss_pred             EeCCCC
Confidence            999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.7e-27  Score=200.04  Aligned_cols=213  Identities=14%  Similarity=0.125  Sum_probs=178.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  132 (288)
                      .+.+..+..|. .+.+++|+|++..++++++.++.|++||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|+
T Consensus        64 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           64 NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEE
Confidence            34555665555 89999999944445566667899999999999988888744 578999999999977 6777899999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-  210 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-  210 (288)
                      +||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++ 
T Consensus       142 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          142 VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence            9999999988888765 457999999999877 577888999999999998877776 566889999999999999888 


Q ss_pred             --CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEe
Q 023018          211 --DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       211 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                        .++.|++||+.+++.+..+..    ...+.+++|+|++++| ++++.|+.|++||+.+++++..+
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CcCCCcEEEEECCCCeEEEEEec----CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence              689999999999988888775    2357899999999877 56688999999999999998876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=4.5e-27  Score=199.26  Aligned_cols=221  Identities=18%  Similarity=0.170  Sum_probs=176.4

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg  129 (288)
                      ....+.+.+|...|.+++|+| +++.|++++.++   .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++
T Consensus       168 g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g  245 (415)
T 2hqs_A          168 GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTG  245 (415)
T ss_dssp             SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCC
Confidence            345678888999999999999 777888888775   9999999988765 4566888999999999999887 666555


Q ss_pred             --eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          130 --LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       130 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                        .|++||+.+++. ..+..+...+.+++|+|+|+.|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|+
T Consensus       246 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          246 SLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             SCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS
T ss_pred             CceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC
Confidence              499999988775 556667788999999999998888876 44  688889988763 44555677889999999999


Q ss_pred             EEEEEeCC---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEe----
Q 023018          205 TICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLN----  274 (288)
Q Consensus       205 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~----  274 (288)
                      +|++++.+   ..|++||+.+++.. .+..   + ..+.+++|+|+|++|++++.++   .|++||+.++. ...+    
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~---~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~  397 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLATGGVQ-VLSS---T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATD  397 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETTTCCEE-ECCC---S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSS
T ss_pred             EEEEEECcCCceEEEEEECCCCCEE-EecC---C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCC
Confidence            99888764   58999999988763 4443   3 2789999999999999888776   79999998554 4445    


Q ss_pred             cceEEEEEee
Q 023018          275 FQYTCVAYDL  284 (288)
Q Consensus       275 ~~~~~~~~~~  284 (288)
                      ..+..++|+|
T Consensus       398 ~~v~~~~~~~  407 (415)
T 2hqs_A          398 GQVKFPAWSP  407 (415)
T ss_dssp             SEEEEEEECC
T ss_pred             CCCcCCcccc
Confidence            3456666665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.2e-26  Score=186.98  Aligned_cols=228  Identities=16%  Similarity=0.121  Sum_probs=163.7

Q ss_pred             CCeeEeecCCC----CEEEEEEcCCCC--cEEEEEeCCCeEEEEEccCC---eeeEeeccccC-----------------
Q 023018           55 DSTHIFSGHSD----EVYSVACSPTDA--TLVATGGGDDKGFFWRINQG---DWASEIQGHKD-----------------  108 (288)
Q Consensus        55 ~~~~~~~~h~~----~v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~-----------------  108 (288)
                      +.+..++...+    .+.++.|-..+.  ..+++++. ..|++|+..++   +.++++..|..                 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  104 (356)
T 2w18_A           26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV  104 (356)
T ss_dssp             EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred             eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence            44555555544    355666655222  25666665 78999999988   77777766654                 


Q ss_pred             --------cEEEEEEecC----CCEEEEEeC--------------------CCeEEEEeC-CCCceeEEeccCCCCEEEE
Q 023018          109 --------SVSSLAFSMD----GQLLASGGL--------------------DGLVQIWDP-SSGNLKCTLEGPGGGVEWV  155 (288)
Q Consensus       109 --------~i~~~~~~~~----~~~l~~~~~--------------------dg~i~i~d~-~~~~~~~~~~~~~~~i~~~  155 (288)
                              .|.+++++|+    ++++++++.                    |+.|++|++ .+++.+..+..|...++.+
T Consensus       105 ~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l  184 (356)
T 2w18_A          105 ALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL  184 (356)
T ss_dssp             EECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred             eeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence                    4566777778    667776553                    788888888 4477777777777788888


Q ss_pred             EEcC---CCCEEEEecCCCeEEEEECCcccEEEEeeccCC---CeEEEEEcCCCCEE------------EEEeCCCeEEE
Q 023018          156 SWHP---RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTI------------CTGSDDATLRV  217 (288)
Q Consensus       156 ~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~p~~~~l------------~~~~~dg~i~i  217 (288)
                      +|++   ++..|++++.|++|+|||++++++++++.+|..   .+.+++|+|+|.++            ++|+.|++|++
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence            8888   668999999999999999999999999986543   57788999999876            56788999999


Q ss_pred             EeCCCCceeEEEcC--CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecce-----EEEEEeec
Q 023018          218 WNPKSGENIHVIRG--HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQY-----TCVAYDLD  285 (288)
Q Consensus       218 ~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~-----~~~~~~~d  285 (288)
                      ||..+++.+..+..  ...|...+.+..+  ++.++++++.||+|+|||+.+|+++.++.++     ..++|+||
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            99999987765521  1124444444444  3789999999999999999999999998533     35789987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=5.1e-26  Score=192.75  Aligned_cols=221  Identities=14%  Similarity=0.091  Sum_probs=171.1

Q ss_pred             eEeecCCCCEEEEEEcCC-------------CCcEEEEEeCC------CeEEEEEccCCeeeEeeccccCcEEEEEEecC
Q 023018           58 HIFSGHSDEVYSVACSPT-------------DATLVATGGGD------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMD  118 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-------------~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  118 (288)
                      ..+.+|...+..+++++.             .+..++.++.+      +.|++||+.. .....+..|...+.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            447777777777766541             03344444443      7999999974 456677779999999999999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCC--eEEEEECCcccEEEEeeccCC
Q 023018          119 GQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDS--TVWMWNADRAAYLNMFSGHGS  192 (288)
Q Consensus       119 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~  192 (288)
                      +++|++++.++   .|++||+.+++.. .+..+...+.+++|+|+|+.|+ +++.++  .|++||+.+++. ..+..|..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence            99999998875   9999999988765 4556777899999999999887 566555  499999988775 56667888


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEEcC
Q 023018          193 SVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNIT  266 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~  266 (288)
                      .+.+++|+|+|++|++++. ++  .|++||+.+++.. .+..   +...+.+++|+|+|++|++++.+   +.|++||+.
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~---~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC---SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec---CCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence            9999999999999988876 44  6888899877643 3333   45678899999999999887764   589999999


Q ss_pred             CCcEEEEe--cceEEEEEeec
Q 023018          267 TGKVCCLN--FQYTCVAYDLD  285 (288)
Q Consensus       267 t~~~~~~~--~~~~~~~~~~d  285 (288)
                      +++.....  ..+..++|+|+
T Consensus       344 ~~~~~~l~~~~~~~~~~~spd  364 (415)
T 2hqs_A          344 TGGVQVLSSTFLDETPSLAPN  364 (415)
T ss_dssp             TCCEEECCCSSSCEEEEECTT
T ss_pred             CCCEEEecCCCCcCCeEEcCC
Confidence            99875433  34667777775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=3.5e-26  Score=194.59  Aligned_cols=200  Identities=20%  Similarity=0.223  Sum_probs=158.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----------ee------EeeccccCcEEEEEEecCCCEEE----E
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WA------SEIQGHKDSVSSLAFSMDGQLLA----S  124 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~------~~~~~~~~~i~~~~~~~~~~~l~----~  124 (288)
                      ..+..+++++ ...++++++.++ +++|+.....          .+      ..+ .+...|++++|+|++++|+    +
T Consensus        37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            4578899999 667888888887 8888764210          01      112 2566799999999999999    7


Q ss_pred             EeCCCeEEEEeCCCC--------ce---eEEeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccCC
Q 023018          125 GGLDGLVQIWDPSSG--------NL---KCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS  192 (288)
Q Consensus       125 ~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  192 (288)
                      |+.|+.|+|||+.++        +.   ...+.+|...|.+++|+|+ +.+|++++.||+|++||++++..+.....|..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            788999999998654        22   3445668889999999997 78999999999999999999877766777889


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc----cccCeEEEEEcCCCCEEEEE-eCCC------cEE
Q 023018          193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY----HTEGLTCLTISADSTLALSG-SKDG------SVH  261 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~dg------~i~  261 (288)
                      .|++++|+|+|++|++|+.||.|++||++ ++....+..+..    |...+.++.|++++.++++. +.+|      .++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            99999999999999999999999999998 666666654321    23479999999988777543 3443      389


Q ss_pred             EEEcCCC
Q 023018          262 MVNITTG  268 (288)
Q Consensus       262 iwd~~t~  268 (288)
                      +|++++.
T Consensus       273 i~~l~~~  279 (434)
T 2oit_A          273 MALLPKK  279 (434)
T ss_dssp             EEECCCT
T ss_pred             EEEeccC
Confidence            9999865

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=5e-25  Score=177.26  Aligned_cols=224  Identities=16%  Similarity=0.202  Sum_probs=168.0

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccc-cCcEEEEEEecCCCEEEEEe--CCC-
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGH-KDSVSSLAFSMDGQLLASGG--LDG-  129 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--~dg-  129 (288)
                      .....+..|...|.+++|+| ++.+|++++ ++.|++|++.+ ++.......+ ...+.+++|+|++++|++++  .++ 
T Consensus        32 ~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  109 (297)
T 2ojh_A           32 RKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGK  109 (297)
T ss_dssp             TEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred             CceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCc
Confidence            33456677899999999999 777887776 78999999998 8777666555 36788999999999999998  334 


Q ss_pred             -eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCc-ccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          130 -LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       130 -~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                       .|.+|++.+++ ...+..+ ..+..++|+|+++.|+ ++..++.+.+|++.. ......+..+...+.+++|+|++++|
T Consensus       110 ~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  187 (297)
T 2ojh_A          110 SAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI  187 (297)
T ss_dssp             CEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence             45555555554 3344433 3489999999999877 677889899998532 23345566677889999999999988


Q ss_pred             EEEe-CCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCcEEEE
Q 023018          207 CTGS-DDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----------GSVHMVNITTGKVCCL  273 (288)
Q Consensus       207 ~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~t~~~~~~  273 (288)
                      ++++ .++.+++|++. .+.....+..   +...+..++|+|++++|++++.+           +.|++||+.+++....
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERITD---SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECCC---CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEec---CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            8766 58889999875 4455555554   55678899999999999888765           5699999999876443


Q ss_pred             e------cceEEEEEeec
Q 023018          274 N------FQYTCVAYDLD  285 (288)
Q Consensus       274 ~------~~~~~~~~~~d  285 (288)
                      .      ..+..++|+|+
T Consensus       265 ~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          265 FDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             EEEEESTTTSCSCCBCTT
T ss_pred             eccCCCCcccccceECCC
Confidence            3      24556666665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.7e-23  Score=173.00  Aligned_cols=225  Identities=11%  Similarity=0.078  Sum_probs=180.2

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC---------cEEEEEEecCCCEEEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---------SVSSLAFSMDGQLLASG  125 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~  125 (288)
                      +....+.. ...+..++|+|++..+++++..++.|.+||..+++.+..+..+..         .+.+++|+|++++++++
T Consensus        80 ~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  158 (353)
T 3vgz_A           80 EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYIS  158 (353)
T ss_dssp             CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEE
T ss_pred             eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEE
Confidence            34444443 334778999995555666777789999999999988887765432         26889999999987777


Q ss_pred             e--CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEE
Q 023018          126 G--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDF  199 (288)
Q Consensus       126 ~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~  199 (288)
                      +  .++.|.+||+.+++....+..+...+..++|+|+++++++++.++.|.+||+.+++.+..+..    +...+..++|
T Consensus       159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          159 GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             EESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred             ecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence            6  478999999999998888875555688999999999999999999999999999988877764    4556788999


Q ss_pred             cCCCCEEEEEeC-CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe---
Q 023018          200 TPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN---  274 (288)
Q Consensus       200 ~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~---  274 (288)
                      +|++++|++++. ++.|.+||+.+++.+..+...    . ...++|+|++++|++++ .++.|.+||+.+++.+..+   
T Consensus       239 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          239 DTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP----E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             ETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS----S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC----C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC
Confidence            999998877765 489999999999888777642    1 24689999998666555 6899999999999988876   


Q ss_pred             cceEEEEEeec
Q 023018          275 FQYTCVAYDLD  285 (288)
Q Consensus       275 ~~~~~~~~~~d  285 (288)
                      ....+++|+|+
T Consensus       314 ~~~~~~~~s~d  324 (353)
T 3vgz_A          314 THPNSLALSAD  324 (353)
T ss_dssp             SEEEEEEECTT
T ss_pred             CCCCeEEEcCC
Confidence            45677888776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=5e-23  Score=170.20  Aligned_cols=221  Identities=12%  Similarity=0.099  Sum_probs=176.6

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeC-------CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEE
Q 023018           63 HSDEVYSVACSPTDATLVATGGG-------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIW  134 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  134 (288)
                      ....+..++|+| ++..+++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+|
T Consensus        39 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           39 VGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            345688999999 5555555553       56899999999988888764 3456789999999965554 557999999


Q ss_pred             eCCCCceeEEeccCCCC---------EEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          135 DPSSGNLKCTLEGPGGG---------VEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      |+.+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+..++|+|++
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            99999988877754322         78899999999877776  47899999999999888887566668899999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCC-ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEe--cceEE
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVCCLN--FQYTC  279 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~~~~~--~~~~~  279 (288)
                      ++|++++.++.|.+||+.+++....+.... .+...+..++|+|++++|++++. ++.|++||+.+++.+..+  .....
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  276 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA  276 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCce
Confidence            999999999999999999998877776422 13456788999999997776655 599999999999988776  33456


Q ss_pred             EEEeec
Q 023018          280 VAYDLD  285 (288)
Q Consensus       280 ~~~~~d  285 (288)
                      ++|+|+
T Consensus       277 ~~~s~d  282 (353)
T 3vgz_A          277 VLFNPA  282 (353)
T ss_dssp             EEEETT
T ss_pred             EEECCC
Confidence            777766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=4.2e-23  Score=169.40  Aligned_cols=200  Identities=13%  Similarity=0.094  Sum_probs=161.5

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-c----cCcEEEEEEecCCCEEEEEe------------CC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-H----KDSVSSLAFSMDGQLLASGG------------LD  128 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~------------~d  128 (288)
                      .+..++|+|++..+++++..++.|.+||+.+++.+..+.. +    ...+.+++|+|++++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4788999995445667777789999999999888776653 1    12567899999999888886            57


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-----------------
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----------------  191 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------  191 (288)
                      +.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.|++||+.+++.+..+..+.                 
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999999888777765 3457889999999988887  5889999998776654433211                 


Q ss_pred             -------------------------------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 023018          192 -------------------------------------------------SSVTCGDFTPDGKTICTGSDDATLRVWNPKS  222 (288)
Q Consensus       192 -------------------------------------------------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~  222 (288)
                                                                       ..+..++|+|++++|+++  ++.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence                                                             234568999999999888  68999999999


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++.+..+..    ...+.+++|+|++++|++++.++.|++||+.+++.+..+
T Consensus       270 ~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          270 NASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             TEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            888777763    345788999999999999989999999999999988876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=6.1e-24  Score=192.59  Aligned_cols=217  Identities=15%  Similarity=0.137  Sum_probs=171.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeC-CC-----eEEEEEccCCeeeEeeccccC------------------------cEEEE
Q 023018           64 SDEVYSVACSPTDATLVATGGG-DD-----KGFFWRINQGDWASEIQGHKD------------------------SVSSL  113 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~i~~~  113 (288)
                      ...+.+++|+| ++++|++++. ++     .|++|++.+++....+..+..                        .+.++
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            45699999999 7888888887 88     899999999887766654433                        27899


Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCc--eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC
Q 023018          114 AFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG  191 (288)
Q Consensus       114 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  191 (288)
                      +|+|+|++|++++. +.|++||+.++.  ....+..+...+..++|+|+|++|++++. +.|++||+.+++.......+.
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence            99999999999886 999999999873  34456667778999999999999999875 699999999887665544333


Q ss_pred             CC----------------eEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC
Q 023018          192 SS----------------VTCGDFTPDGKTICTGSDDA---------------------------------TLRVWNPKS  222 (288)
Q Consensus       192 ~~----------------i~~~~~~p~~~~l~~~~~dg---------------------------------~i~i~d~~~  222 (288)
                      ..                +..++|+|+|++|++++.++                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            32                47799999999999987765                                 789999988


Q ss_pred             -CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEecc--------eEEEEEeec
Q 023018          223 -GENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-----DGSVHMVNITTGKVCCLNFQ--------YTCVAYDLD  285 (288)
Q Consensus       223 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~t~~~~~~~~~--------~~~~~~~~d  285 (288)
                       ++....... ..+...+..++| |+|+.|++++.     +..|++||+.++++...+..        +..++|+||
T Consensus       273 ~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          273 QAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             TCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence             765443322 125677899999 99999887654     56899999999998776632        246777776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=2.8e-22  Score=175.03  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=176.5

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEc--cCCeeeEeeccccCcEEEEEEec----CCCEEEEEe
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI--NQGDWASEIQGHKDSVSSLAFSM----DGQLLASGG  126 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~  126 (288)
                      ..+.+..+..+.. +.+++|+| ++++|++++.++.|++||+  .+++.+..+. +......++|+|    +++++++++
T Consensus       168 t~~~~~~i~~g~~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~  244 (543)
T 1nir_A          168 SKKIVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGA  244 (543)
T ss_dssp             TCCEEEEEECSTT-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CceEEEEEecCcc-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEE
Confidence            3456677773333 89999999 8889999999999999999  8888888887 455679999999    999999887


Q ss_pred             -CCCeEEEEeCCCCceeEEeccC-----------CCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEE--EeeccC
Q 023018          127 -LDGLVQIWDPSSGNLKCTLEGP-----------GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN--MFSGHG  191 (288)
Q Consensus       127 -~dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~  191 (288)
                       .+++|.+||..+++.+..+..+           ...+..+.++|++. ++++...++.|.+||+.+.+.+.  .+. +.
T Consensus       245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~  323 (543)
T 1nir_A          245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AA  323 (543)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CC
T ss_pred             ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cC
Confidence             4899999999999988887642           23689999999766 55666778999999998765433  333 56


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEEcCCC-ccccCeEEEEEcCC-CCEEEEEe-CCCcEEEEEcCC
Q 023018          192 SSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISAD-STLALSGS-KDGSVHMVNITT  267 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~t  267 (288)
                      ..+..+.|+|++++|++++ .+++|.+||+.+++.+..+.... .|......+ ++|+ +.+++++. .|++|.+|++.+
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            6788999999999877655 58899999999999888776421 233333333 4676 66666765 589999999999


Q ss_pred             -------CcEEEEecc----eEEEEEeec
Q 023018          268 -------GKVCCLNFQ----YTCVAYDLD  285 (288)
Q Consensus       268 -------~~~~~~~~~----~~~~~~~~d  285 (288)
                             ++++.++..    ...+.|+|+
T Consensus       403 ~~~~~~~~~~v~~l~~~g~~~~~v~~~pd  431 (543)
T 1nir_A          403 KNHPQYAWKKVAELQGQGGGSLFIKTHPK  431 (543)
T ss_dssp             TTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             CCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence                   899888833    345666665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2e-22  Score=165.34  Aligned_cols=211  Identities=15%  Similarity=0.110  Sum_probs=160.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeeccccCcEEEEEEecCCCEEEEEeCCC---
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASGGLDG---  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---  129 (288)
                      .+....+..+...+ +++|+|++..+++++..++.|.+||+.+++. ...+..+..+..+++|+|++++|+++..++   
T Consensus        30 ~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  108 (331)
T 3u4y_A           30 LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPF  108 (331)
T ss_dssp             CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSC
T ss_pred             cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcc
Confidence            34455666666667 9999994444555555589999999999887 667776666666599999999988555553   


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCCe-EEEEECCcccEE----EEeeccCCCeEEEEEcCCC
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDST-VWMWNADRAAYL----NMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~----~~~~~~~~~i~~~~~~p~~  203 (288)
                      .|.+||+.+++.+..+..+ ....+++|+|++++++++ ..++. |.+|++.....+    .........+..++|+|+|
T Consensus       109 ~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg  187 (331)
T 3u4y_A          109 NMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG  187 (331)
T ss_dssp             EEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS
T ss_pred             cEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCC
Confidence            8999999999888877654 457999999999855554 55578 999998753322    1222345568999999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCCCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcE
Q 023018          204 KTICTGS-DDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKV  270 (288)
Q Consensus       204 ~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~  270 (288)
                      ++|++++ .++.|++||+.+++.   +..+..    ...+..++|+|+|++|++++ .++.|.+||+.+++.
T Consensus       188 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          188 NFAFVANLIGNSIGILETQNPENITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcccceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            9766555 688999999998887   666663    35677899999999776654 478899999999987

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.3e-22  Score=166.43  Aligned_cols=213  Identities=8%  Similarity=0.004  Sum_probs=161.7

Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCeEEEEeCCCCce-eEEeccC
Q 023018           71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNL-KCTLEGP  148 (288)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~  148 (288)
                      .|.+....++++++.++.|.+||+.+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4556567778889999999999999999888877666667 9999999997766665 88999999999987 6666666


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCC---eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-eCCCe-EEEEeCCCC
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT-LRVWNPKSG  223 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~dg~-i~i~d~~~~  223 (288)
                      ..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. ...+..++|+|+|++|+++ ..++. |.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66555599999999999666553   899999999988887764 4456899999999866555 55578 999998754


Q ss_pred             ceeEEEc-CCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcE---EEEe---cceEEEEEeec
Q 023018          224 ENIHVIR-GHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKV---CCLN---FQYTCVAYDLD  285 (288)
Q Consensus       224 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~---~~~~---~~~~~~~~~~d  285 (288)
                      ..+.... ........+..++|+|+|++|+++ ..++.|++||+.+++.   +..+   ..+..++|+||
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd  231 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD  231 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC
Confidence            3321110 000134567899999999866554 4689999999999998   6655   44567788776

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.5e-22  Score=166.47  Aligned_cols=222  Identities=15%  Similarity=0.214  Sum_probs=157.7

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEEcc--CCe--eeEeeccccCcEEEEEEecCCCEEEEEeC-CCeEEEE
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGGD-DKGFFWRIN--QGD--WASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIW  134 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~  134 (288)
                      ..|...+.+++|+| ++.+|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+|
T Consensus        34 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            34677899999999 66666666665 999999997  444  334454333 7789999999998876664 8899999


Q ss_pred             eCC---CCceeEEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCc-ccEEE----Eeec-cCCCeEEEEEcCCCC
Q 023018          135 DPS---SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR-AAYLN----MFSG-HGSSVTCGDFTPDGK  204 (288)
Q Consensus       135 d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~i~~~~~~p~~~  204 (288)
                      ++.   ..+....+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++...    .+.. ....+..++|+|+++
T Consensus       112 d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            994   33444444433 4588999999999888777 889999999987 54432    2222 345788999999999


Q ss_pred             EEEEEe-CCCeEEEEeCCC--Cce--eEEEcCCC---ccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcC--CC--cEE
Q 023018          205 TICTGS-DDATLRVWNPKS--GEN--IHVIRGHP---YHTEGLTCLTISADSTLALS-GSKDGSVHMVNIT--TG--KVC  271 (288)
Q Consensus       205 ~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~--t~--~~~  271 (288)
                      +|++++ .++.|.+|++..  +..  ...+....   .....+..++|+|++++|++ +..++.|++|++.  ++  +.+
T Consensus       191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            876655 789999999953  432  22232111   11345678999999988774 4578999999998  33  333


Q ss_pred             EEe---cceEEEEEeec
Q 023018          272 CLN---FQYTCVAYDLD  285 (288)
Q Consensus       272 ~~~---~~~~~~~~~~d  285 (288)
                      ..+   ..+..++|+|+
T Consensus       271 ~~~~~~~~~~~~~~s~d  287 (343)
T 1ri6_A          271 GFQPTETQPRGFNVDHS  287 (343)
T ss_dssp             EEEECSSSCCCEEECTT
T ss_pred             eeecCCCccceEEECCC
Confidence            333   33567777765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.2e-22  Score=177.32  Aligned_cols=196  Identities=12%  Similarity=0.044  Sum_probs=164.5

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC--CCCceeEEeccCC
Q 023018           72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP--SSGNLKCTLEGPG  149 (288)
Q Consensus        72 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~  149 (288)
                      ++| ++.++++++.+++|.+||..+++.+.++..+.. +..++|+|++++|++++.++.|++||+  .+++.+..+.. .
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            778 678899999999999999999999998874333 889999999999999999999999999  88888888874 4


Q ss_pred             CCEEEEEEcC----CCCEEEEecC-CCeEEEEECCcccEEEEeecc-----------CCCeEEEEEcCCCCE-EEEEeCC
Q 023018          150 GGVEWVSWHP----RGHIVLAGSE-DSTVWMWNADRAAYLNMFSGH-----------GSSVTCGDFTPDGKT-ICTGSDD  212 (288)
Q Consensus       150 ~~i~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~p~~~~-l~~~~~d  212 (288)
                      ..+..++|+|    +|+++++++. +++|.+||..+++++..+..+           ...+..+.++|++.. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            5689999999    9999999884 899999999999988887642           236889999997665 5566678


Q ss_pred             CeEEEEeCCCCceeE--EEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          213 ATLRVWNPKSGENIH--VIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 g~i~i~d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.|.+||+.+.+.+.  .+.    +...+..+.|+|+|++|++++ .+++|.+||+.+++++..+
T Consensus       302 g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEE----CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEecCCCcceeEEec----cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence            999999998766544  333    345678899999999776554 5889999999999998877

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=7.4e-23  Score=174.13  Aligned_cols=203  Identities=12%  Similarity=0.065  Sum_probs=149.2

Q ss_pred             cCCCCEEEEEEcCCCCcEEE----EEeCCCeEEEEEccCC--------e---eeEeeccccCcEEEEEEecC-CCEEEEE
Q 023018           62 GHSDEVYSVACSPTDATLVA----TGGGDDKGFFWRINQG--------D---WASEIQGHKDSVSSLAFSMD-GQLLASG  125 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~----~~~~dg~i~iw~~~~~--------~---~~~~~~~~~~~i~~~~~~~~-~~~l~~~  125 (288)
                      .|...|++++|+| ++.+||    +|+.|+.|+|||+.+.        +   ....+.+|...|.+++|+|+ +.+|+++
T Consensus        90 ~~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           90 PMKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             CCSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             cCCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            3567899999999 677777    7889999999998754        1   24556679999999999998 7899999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-------CCCeEEEE
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-------GSSVTCGD  198 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~  198 (288)
                      +.||+|++||++++........|...+.+++|+|+|++|++|+.||.|++||++ ++....+..+       ...+.+++
T Consensus       169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred             ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE
Confidence            999999999999987766666788899999999999999999999999999998 5555555433       23789999


Q ss_pred             EcCCCCEEEE-EeCCC------eEEEEeCCCCc-----eeEEEcCCC----ccccCeEEEEEcCCCCEEEEEe-CCCcEE
Q 023018          199 FTPDGKTICT-GSDDA------TLRVWNPKSGE-----NIHVIRGHP----YHTEGLTCLTISADSTLALSGS-KDGSVH  261 (288)
Q Consensus       199 ~~p~~~~l~~-~~~dg------~i~i~d~~~~~-----~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  261 (288)
                      |++++.++++ ++.+|      .+++|+++...     ....+....    ....+-..+.+-++.+++++++ ..+.|.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~  327 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVS  327 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCE
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCcee
Confidence            9998877754 33443      38999998642     112221110    1112222333446666666554 455677


Q ss_pred             EEEcC
Q 023018          262 MVNIT  266 (288)
Q Consensus       262 iwd~~  266 (288)
                      ++...
T Consensus       328 vl~~~  332 (434)
T 2oit_A          328 ILARQ  332 (434)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            77654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.9e-24  Score=192.66  Aligned_cols=216  Identities=13%  Similarity=0.138  Sum_probs=166.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC---cEEEEEEecCCCEEEEEeCC---------CeEEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGLD---------GLVQI  133 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d---------g~i~i  133 (288)
                      .+.+++|+| +++++++ +.||.|++|++.+++....+..|..   .|.+++|+|+|++|++++.+         +.|.+
T Consensus        18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            467889999 6667665 7899999999999988877776654   48999999999999998764         78899


Q ss_pred             EeCCCCceeEEec---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCe----------------
Q 023018          134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV----------------  194 (288)
Q Consensus       134 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i----------------  194 (288)
                      ||+.+++. ..+.   .+...+..++|+|+|+.|++++. +.|++|++.+++.......+...+                
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            99998876 3333   23334888999999999999887 899999999887666555443333                


Q ss_pred             --EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCceeEEEcCCC---cc
Q 023018          195 --TCGDFTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENIHVIRGHP---YH  235 (288)
Q Consensus       195 --~~~~~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~~---~~  235 (288)
                        .+++|+|+|++|++++.++                                  .|++||+.+++....+..+.   .+
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              7899999999999887543                                  79999998887655555321   12


Q ss_pred             ccCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCcEEEEecc-----e----EEEEEeec
Q 023018          236 TEGLTCLTISADSTLALSGSK----DGSVHMVNITTGKVCCLNFQ-----Y----TCVAYDLD  285 (288)
Q Consensus       236 ~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~t~~~~~~~~~-----~----~~~~~~~d  285 (288)
                      ...+..++|+|||++|++...    +..|++||+.++++...+..     +    ..++|+||
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence            456889999999998876643    35799999999987766522     1    36777775

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.1e-21  Score=161.41  Aligned_cols=221  Identities=12%  Similarity=0.136  Sum_probs=153.8

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEE-EEEeCCCeEEEEEcc---CCeeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLV-ATGGGDDKGFFWRIN---QGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQ  132 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  132 (288)
                      ..+..+. .+..++|+| ++.++ +++..++.|.+|++.   ..+....+.. ...+.+++|+|++++|++++ .++.|+
T Consensus        78 ~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           78 AESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             cccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEE
Confidence            3444444 788999999 55555 455558999999994   3444455543 34578999999999888877 899999


Q ss_pred             EEeCCC-CceeE----Eecc-CCCCEEEEEEcCCCCEEEEe-cCCCeEEEEECCc--ccE--EEEee---cc---CCCeE
Q 023018          133 IWDPSS-GNLKC----TLEG-PGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADR--AAY--LNMFS---GH---GSSVT  195 (288)
Q Consensus       133 i~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~---~~---~~~i~  195 (288)
                      +|++.+ ++...    .+.. ....+..++|+|++++++++ ..++.|.+|++..  ++.  ...+.   ..   ...+.
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            999987 54432    2222 34478899999999976555 4789999999953  332  22222   11   23567


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeCC--CC--ceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEE--cCC
Q 023018          196 CGDFTPDGKTICTGS-DDATLRVWNPK--SG--ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVN--ITT  267 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~-~dg~i~i~d~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd--~~t  267 (288)
                      .++|+|++++|+++. .++.|.+||+.  ++  +.+..+..   + ..+..++|+|++++|++++ .++.|.+|+  ..+
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---C-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            899999999887554 78999999998  32  33333432   2 3378899999999888887 579999994  456


Q ss_pred             CcEE--EEe---cceEEEEEeec
Q 023018          268 GKVC--CLN---FQYTCVAYDLD  285 (288)
Q Consensus       268 ~~~~--~~~---~~~~~~~~~~d  285 (288)
                      |+..  ..+   ....+++|.++
T Consensus       311 g~~~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          311 GLLHEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             TEEEEEEEEECSSSCCEEEEEEE
T ss_pred             ceeeEccccccCCCCeeEEEEcc
Confidence            6543  222   34667777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=7.1e-22  Score=162.91  Aligned_cols=210  Identities=12%  Similarity=0.039  Sum_probs=159.6

Q ss_pred             CCeeEeecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecccc------CcEEEEEEecCCCEEEEEeC
Q 023018           55 DSTHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK------DSVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        55 ~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~  127 (288)
                      +.+..+..+. ..+..++|+|++..+++++..++.|.+|++.+++.+..+....      ..+.+++|+|++++|++++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence            3344444333 2578899999444456666778999999999988877765322      23678999999999998886


Q ss_pred             C------------CeEEEEeCCCCce---eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-
Q 023018          128 D------------GLVQIWDPSSGNL---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-  191 (288)
Q Consensus       128 d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-  191 (288)
                      +            +.|.+||+.+++.   +..+..+ ..+.+++|+|+++ +++++  +.|++||+.+++.+..+..+. 
T Consensus       112 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~  187 (349)
T 1jmx_B          112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNW  187 (349)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTC
T ss_pred             cccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCc-EEEcc--CcEEEEeCCCCceecccccccc
Confidence            5            8999999988543   3344433 3588899999999 55554  349999998887766554221 


Q ss_pred             -------------------------------------------------------------------CCeEEEEEcC-CC
Q 023018          192 -------------------------------------------------------------------SSVTCGDFTP-DG  203 (288)
Q Consensus       192 -------------------------------------------------------------------~~i~~~~~~p-~~  203 (288)
                                                                                         ..+..++|+| ++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg  267 (349)
T 1jmx_B          188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP  267 (349)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred             CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC
Confidence                                                                               1345677889 99


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|+++  ++.|.+||+.+++.+..+..    ...+.+++|+|++++|++++.++.|++||+.+++.+..+
T Consensus       268 ~~l~~~--~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          268 NQIYGV--LNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             TEEEEE--ESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEE--cCeEEEEECccCeEEEEEcC----CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            999888  88999999999988777763    345678999999998888888999999999999988876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=2.7e-22  Score=181.83  Aligned_cols=215  Identities=13%  Similarity=0.092  Sum_probs=162.9

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      .|.+++|+| ++++|++++. +.|++|++.++.  ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++...
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            478999999 7778877776 999999999873  3455666888899999999999999887 5699999999887665


Q ss_pred             EeccCCCC----------------EEEEEEcCCCCEEEEecCCC---------------------------------eEE
Q 023018          144 TLEGPGGG----------------VEWVSWHPRGHIVLAGSEDS---------------------------------TVW  174 (288)
Q Consensus       144 ~~~~~~~~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~  174 (288)
                      ....+...                +..++|+|+|++|++++.++                                 .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            54433332                47799999999999987665                                 889


Q ss_pred             EEECCc-ccEEEEee--ccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceeEEEcCCCc-cccCeEEEEEc
Q 023018          175 MWNADR-AAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTIS  245 (288)
Q Consensus       175 i~d~~~-~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~  245 (288)
                      +||+.+ ++......  .+...+..++| |+|++|++++.     +..|++||+.+++....+..+.. ....+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 76554432  36678999999 99999987764     56799999999887766654210 00134678999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC-CCcEEEEe----cceEEE-EEeec
Q 023018          246 ADSTLALSGSKDGSVHMVNIT-TGKVCCLN----FQYTCV-AYDLD  285 (288)
Q Consensus       246 ~~~~~l~~~~~dg~i~iwd~~-t~~~~~~~----~~~~~~-~~~~d  285 (288)
                      |+|+++++++.+|.+++|.+. +++ ...+    ..+..+ .|+|+
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~d  390 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEK  390 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETT
T ss_pred             CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCC
Confidence            999998999999988888775 445 5544    234444 47765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=2.7e-21  Score=158.58  Aligned_cols=203  Identities=11%  Similarity=0.070  Sum_probs=160.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccC--cEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEEeccCC-----
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD--SVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEGPG-----  149 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~-----  149 (288)
                      .++++++.++.|.+||+.+++.+..+.....  .+..++|+|++++++ ++..++.|.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788999999999999999988887763221  478899999998664 55567899999999998877665321     


Q ss_pred             CCEEEEEEcCCCCEEEEec------------CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          150 GGVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       150 ~~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      ..+..++|+|++++++++.            .++.|.+||+.+++.+..+.. ...+..++|+|++++|+++  ++.|++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            1467899999999988886            579999999998888777764 4567889999999988887  688999


Q ss_pred             EeCCCCceeEEEcCCC--c-------------------------------------------------------------
Q 023018          218 WNPKSGENIHVIRGHP--Y-------------------------------------------------------------  234 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~--~-------------------------------------------------------------  234 (288)
                      ||+.+++....+....  .                                                             
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            9999887665554321  0                                                             


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      +...+.+++|+|++++|+++  ++.|++||+.+++.+..+   ..+.+++|+|+
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  290 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTD  290 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTT
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCC
Confidence            01234568999999998888  799999999999988776   45677888775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=5.5e-22  Score=178.90  Aligned_cols=216  Identities=13%  Similarity=0.110  Sum_probs=162.2

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-----C
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-----G  139 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~  139 (288)
                      ..|.+++|+| ++.++++ . ++.|++||+.+++..... .+...+.+++|+|+|++|+++ .++.|++|++.+     +
T Consensus        82 ~~v~~~~~sp-d~~~~~~-~-~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           82 FPSFRTLDAG-RGLVVLF-T-QGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             CCCEEEEETT-TTEEEEE-E-TTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             cCceeEEECC-CCeEEEE-E-CCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            5799999999 5555544 3 499999999988765444 466778899999999999885 679999999998     7


Q ss_pred             ceeEEeccCCCC--------------EEEEEEcCCCCEEEEec---------------------------------CCCe
Q 023018          140 NLKCTLEGPGGG--------------VEWVSWHPRGHIVLAGS---------------------------------EDST  172 (288)
Q Consensus       140 ~~~~~~~~~~~~--------------i~~~~~~~~~~~l~~~~---------------------------------~dg~  172 (288)
                      +.......+...              +.+++|+|+|++|++++                                 .+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            766544433332              47899999999999987                                 4467


Q ss_pred             EEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEEcCC--CccccCeEEEE
Q 023018          173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIHVIRGH--PYHTEGLTCLT  243 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~  243 (288)
                      |++||+.+++......  .+...+..++|+|+|++|++++.++     .|++||+.+++....+...  ......+..+.
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            9999999887654442  4567799999999999999887765     8999999988443333211  00112246789


Q ss_pred             EcC--CCCEEEEEeCCCcEEEEEcC-CCcEEEEec----ceEE-EEEeec
Q 023018          244 ISA--DSTLALSGSKDGSVHMVNIT-TGKVCCLNF----QYTC-VAYDLD  285 (288)
Q Consensus       244 ~~~--~~~~l~~~~~dg~i~iwd~~-t~~~~~~~~----~~~~-~~~~~d  285 (288)
                      |+|  +|++|++++.+|.+++|.+. +++.+..+.    .+.. ++|+|+
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spd  366 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPK  366 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTT
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCC
Confidence            999  99999999999999999886 667666662    2333 677765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=1.9e-21  Score=160.38  Aligned_cols=210  Identities=11%  Similarity=0.035  Sum_probs=161.2

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecccc-CcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEEec
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      .+++++ ++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....+.
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            456677 78899999999999999999999888876443 2567899999998665 45578999999999998877766


Q ss_pred             cCC------CCEEEEEEcCCCCEEEEecCC------------CeEEEEECCcccE---EEEeeccCCCeEEEEEcCCCCE
Q 023018          147 GPG------GGVEWVSWHPRGHIVLAGSED------------STVWMWNADRAAY---LNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       147 ~~~------~~i~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                      ...      ..+..++|+|+++++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++ 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence            432      237789999999999998865            8999999988543   33333 334688999999999 


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCc---------------------------------------------------
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRGHPY---------------------------------------------------  234 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------------------------------------------  234 (288)
                      +++++  +.|++||+.+++....+.....                                                   
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            66654  3499999998887766643210                                                   


Q ss_pred             --------------cccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          235 --------------HTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       235 --------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                                    ....+..++|+| ++++|+++  ++.|++||+.+++.+..+   ..+.+++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d  305 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK  305 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCC
Confidence                          001345677889 99998888  889999999999988776   34667888876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=1e-20  Score=156.25  Aligned_cols=224  Identities=14%  Similarity=0.194  Sum_probs=155.2

Q ss_pred             ecCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEe
Q 023018           61 SGHSDEVYSVACSPTDATLVATGGG--DDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD  135 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d  135 (288)
                      ..+...+..++|+| ++++++++..  ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34456678899999 6665544432  6899999998765  3444455677788999999999888887 789999999


Q ss_pred             CCC-Cc--eeEEeccC---------CCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccEE--EEeec-cCCCeEEEEE
Q 023018          136 PSS-GN--LKCTLEGP---------GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAYL--NMFSG-HGSSVTCGDF  199 (288)
Q Consensus       136 ~~~-~~--~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~--~~~~~-~~~~i~~~~~  199 (288)
                      +.. +.  .+..+...         ...+.+++|+|+++++++...++.|++|++. +++..  ..+.. ....+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            963 32  22223211         1248899999999977777778999999998 45432  22222 2336788999


Q ss_pred             cCCCCEEEEE-eCCCeEEEEeCCC--Cce--eEEEcCCCc---cccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC-C-
Q 023018          200 TPDGKTICTG-SDDATLRVWNPKS--GEN--IHVIRGHPY---HTEGLTCLTISADSTLAL-SGSKDGSVHMVNITT-G-  268 (288)
Q Consensus       200 ~p~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~t-~-  268 (288)
                      +|+|++|+++ ..++.|.+|++..  ++.  +..+.....   ....+..++|+|+|++|+ +...++.|.+|++.. + 
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            9999977664 5688999999874  432  222222110   114588899999999774 555689999999973 2 


Q ss_pred             -cEEEEe----cceEEEEEeec
Q 023018          269 -KVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       269 -~~~~~~----~~~~~~~~~~d  285 (288)
                       +.+..+    ..+..++|+||
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spd  296 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPT  296 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTT
T ss_pred             EEEeEEEecCCCCcCeEEECCC
Confidence             444443    23678888876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=7.6e-22  Score=177.98  Aligned_cols=225  Identities=15%  Similarity=0.121  Sum_probs=166.5

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----CeeeEeeccccCc--------------EEEEEEe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDS--------------VSSLAFS  116 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~--------------i~~~~~~  116 (288)
                      ....+..+...+.+++|+| +++.|+++ .++.|++|++.+     ++.......+...              +.++.|+
T Consensus       112 ~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          112 KVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             EEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             ceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence            3445566777889999999 77777774 579999999998     7766554444333              4789999


Q ss_pred             cCCCEEEEEe---------------------------------CCCeEEEEeCCCCceeEEec--cCCCCEEEEEEcCCC
Q 023018          117 MDGQLLASGG---------------------------------LDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRG  161 (288)
Q Consensus       117 ~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~  161 (288)
                      |+|++|++++                                 .+..|++||+.+++......  .+...+.+++|+|+|
T Consensus       190 pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg  269 (706)
T 2z3z_A          190 PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE  269 (706)
T ss_dssp             TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC
Confidence            9999999987                                 44689999999887654432  355679999999999


Q ss_pred             CEEEEecCCC-----eEEEEECCcccEEEEee-c-cCC---CeEEEEEcC--CCCEEEEEeCCCeEEEEeCC-CCceeEE
Q 023018          162 HIVLAGSEDS-----TVWMWNADRAAYLNMFS-G-HGS---SVTCGDFTP--DGKTICTGSDDATLRVWNPK-SGENIHV  228 (288)
Q Consensus       162 ~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~i~~~~~~p--~~~~l~~~~~dg~i~i~d~~-~~~~~~~  228 (288)
                      +.|++++.++     .|++||+.+++....+. . +..   .+..++|+|  +|++|++++.+|.+++|.+. ++..+..
T Consensus       270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~  349 (706)
T 2z3z_A          270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ  349 (706)
T ss_dssp             SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE
T ss_pred             CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe
Confidence            9999887665     89999999884333332 1 222   246789999  99999999999988888765 5566666


Q ss_pred             EcCCCccccCeEE-EEEcCCCCEEEEEeC-CC----cEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018          229 IRGHPYHTEGLTC-LTISADSTLALSGSK-DG----SVHMVNITTGKVCCLN--FQYTCVAYDLD  285 (288)
Q Consensus       229 ~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~iwd~~t~~~~~~~--~~~~~~~~~~d  285 (288)
                      +..   +...+.. ++|+|+++.|+.++. ++    .|+.|++.+++.....  ..+..++|+||
T Consensus       350 l~~---~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spd  411 (706)
T 2z3z_A          350 VTK---GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPD  411 (706)
T ss_dssp             CCC---SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTT
T ss_pred             cCC---CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCC
Confidence            654   4556766 799999987765544 44    6888888887643332  45677888876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=1.7e-20  Score=155.02  Aligned_cols=213  Identities=16%  Similarity=0.209  Sum_probs=148.5

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEEccC-C--eeeEeecc---------ccCcEEEEEEecCCCEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGG-GDDKGFFWRINQ-G--DWASEIQG---------HKDSVSSLAFSMDGQLLA  123 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~  123 (288)
                      +..+..+...+..++|+| ++++|++++ .++.|.+|++.. +  ..+..+..         +...+.+++|+|++++++
T Consensus        78 ~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v  156 (347)
T 3hfq_A           78 LNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV  156 (347)
T ss_dssp             EEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred             eeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence            334445677889999999 666666665 789999999963 2  22333321         122488999999999666


Q ss_pred             EEeCCCeEEEEeCC-CCceeE--Eecc-CCCCEEEEEEcCCCCEEEE-ecCCCeEEEEECCc--ccE--EEEeeccC---
Q 023018          124 SGGLDGLVQIWDPS-SGNLKC--TLEG-PGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADR--AAY--LNMFSGHG---  191 (288)
Q Consensus       124 ~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~---  191 (288)
                      +...++.|.+|++. +++...  .+.. ....+..++|+|+|+++++ +..++.|.+|++..  ++.  +..+....   
T Consensus       157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~  236 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY  236 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC
T ss_pred             EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC
Confidence            66678899999998 454332  2222 2336888999999996655 56788999999874  432  22333222   


Q ss_pred             ---CCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC---ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-CcEEEE
Q 023018          192 ---SSVTCGDFTPDGKTIC-TGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GSVHMV  263 (288)
Q Consensus       192 ---~~i~~~~~~p~~~~l~-~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw  263 (288)
                         ..+..++|+|+|++|+ +...++.|.+|++...   ..+..+..   +...+..++|+|+|++|++++.+ +.|.+|
T Consensus       237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST---EGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC---SSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec---CCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence               3588999999999885 4556899999998732   33333332   34567899999999988887764 899999


Q ss_pred             --EcCCCcEEEE
Q 023018          264 --NITTGKVCCL  273 (288)
Q Consensus       264 --d~~t~~~~~~  273 (288)
                        |..+|++...
T Consensus       314 ~~d~~tg~l~~~  325 (347)
T 3hfq_A          314 ARDLTSGKLSLL  325 (347)
T ss_dssp             EECTTTCCEEEE
T ss_pred             EEeCCCCeEEec
Confidence              5567877643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=5.2e-22  Score=179.46  Aligned_cols=211  Identities=12%  Similarity=0.054  Sum_probs=156.6

Q ss_pred             CCCeeEeecCCC---CEEEEEEcCCCCcEEEEEeCC---------CeEEEEEccCCeeeEeec---cccCcEEEEEEecC
Q 023018           54 DDSTHIFSGHSD---EVYSVACSPTDATLVATGGGD---------DKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMD  118 (288)
Q Consensus        54 ~~~~~~~~~h~~---~v~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~  118 (288)
                      .+....+.+|..   .|.+++|+| ++++|++++.+         +.|++||+.+++. ..+.   .|...+..++|+|+
T Consensus        47 g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd  124 (723)
T 1xfd_A           47 NTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK  124 (723)
T ss_dssp             CCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS
T ss_pred             CcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC
Confidence            455566776765   499999999 77888887664         7889999998875 3333   34445888999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCE------------------EEEEEcCCCCEEEEecCCC---------
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV------------------EWVSWHPRGHIVLAGSEDS---------  171 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i------------------~~~~~~~~~~~l~~~~~dg---------  171 (288)
                      |++|+.++. +.|++|++.+++.......+...+                  .+++|+|+|+.|++++.++         
T Consensus       125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence            999999886 799999999887766655433323                  7899999999999887543         


Q ss_pred             -------------------------eEEEEECCcccEEEEeecc------CCCeEEEEEcCCCCEEEEEeC----CCeEE
Q 023018          172 -------------------------TVWMWNADRAAYLNMFSGH------GSSVTCGDFTPDGKTICTGSD----DATLR  216 (288)
Q Consensus       172 -------------------------~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~p~~~~l~~~~~----dg~i~  216 (288)
                                               .|++||+.+++....+..+      ...+..++|+|+|++|++...    +..|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                                     7999999888755555543      567899999999998877653    35799


Q ss_pred             EEeCCCCceeEEEcCCCccccCe----EEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCc
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGL----TCLTISADSTLALS--GSKDG------SVHMVN-ITTGK  269 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~iwd-~~t~~  269 (288)
                      +||+.+++....+...  +...+    ..++|+|+|+.|+.  +..++      .|++|| ..+++
T Consensus       284 ~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          284 LCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEETTTCCEEEEEEEE--CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEeCCCCcceEEEEec--cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            9999998876655431  12222    36799999987664  45666      577788 45554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=3.2e-21  Score=154.90  Aligned_cols=196  Identities=13%  Similarity=0.106  Sum_probs=146.6

Q ss_pred             EEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeEEeccC-CCCEEEEEEcC
Q 023018           82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP-GGGVEWVSWHP  159 (288)
Q Consensus        82 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~i~~~~~~~  159 (288)
                      .++.++.|++|++.+++... +..|...+.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            45678999999999888664 445889999999999999999887 78999999998 8776666555 36788999999


Q ss_pred             CCCEEEEecC--C--CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCceeEEEcCC
Q 023018          160 RGHIVLAGSE--D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDATLRVWNP--KSGENIHVIRGH  232 (288)
Q Consensus       160 ~~~~l~~~~~--d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~-~~~~dg~i~i~d~--~~~~~~~~~~~~  232 (288)
                      ++++|++++.  +  ..|..|++.++. ...+..+ ..+..++|+|++++|+ +++.++.+++|++  .++. ...+.. 
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~-  170 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH-  170 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC-
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc-
Confidence            9999999983  3  455555555554 3444433 3588999999999887 7778998899885  4443 334433 


Q ss_pred             CccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCcEEEEec----ceEEEEEeec
Q 023018          233 PYHTEGLTCLTISADSTLALSGS-KDGSVHMVNIT-TGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-t~~~~~~~~----~~~~~~~~~d  285 (288)
                        +...+.+++|+|+++.|++++ .++.+++|++. .+..+..+.    .+..++|+|+
T Consensus       171 --~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d  227 (297)
T 2ojh_A          171 --GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS  227 (297)
T ss_dssp             --SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT
T ss_pred             --CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC
Confidence              567899999999999887665 58999999986 455555553    3445566654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.9e-21  Score=182.49  Aligned_cols=219  Identities=16%  Similarity=0.161  Sum_probs=171.7

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-----------ccCcEEEEEEe-cCCCEEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----------HKDSVSSLAFS-MDGQLLA  123 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~  123 (288)
                      ....+..|. .+..++|+| ++..|+.+ .++.|++|++...+ +..+..           |...+.+++|+ |+|++|+
T Consensus       237 ~~~~l~~~~-~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la  312 (1045)
T 1k32_A          237 DLRKHTSFT-DYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA  312 (1045)
T ss_dssp             SCEECCCCC-SSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE
T ss_pred             cceEecCCC-CcceeeEcC-CCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEE
Confidence            344555555 366779999 66666666 47999999995443 335543           33468899999 9999998


Q ss_pred             EEeCCCeEEEEeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEecCCCeEE-EEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          124 SGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVW-MWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       124 ~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      +++ ++.|.+|++..+.... +..+.. .+..++|+ +++.|++++.++.+. +|++.+++... +..+...+..++|+|
T Consensus       313 ~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp  388 (1045)
T 1k32_A          313 FVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR  388 (1045)
T ss_dssp             EEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT
T ss_pred             EEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC
Confidence            887 7899999998776543 555666 79999999 999999998888899 99998776544 347778899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC----------cEEEEEcCCCcEE
Q 023018          202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG----------SVHMVNITTGKVC  271 (288)
Q Consensus       202 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~~t~~~~  271 (288)
                      +|++|++++.++.|++||+.+++....+..   +...+..++|+|+|++|++++.++          .|++||+.+++..
T Consensus       389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~  465 (1045)
T 1k32_A          389 NGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  465 (1045)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             CCCEEEEECCCCeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence            999999999999999999999887776655   667788999999999998877644          8999999998843


Q ss_pred             EEe---cceEEEEEeec
Q 023018          272 CLN---FQYTCVAYDLD  285 (288)
Q Consensus       272 ~~~---~~~~~~~~~~d  285 (288)
                      ...   .....++|+||
T Consensus       466 ~l~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          466 AATTENSHDYAPAFDAD  482 (1045)
T ss_dssp             ECSCSSSBEEEEEECTT
T ss_pred             EeeCCCcccCCceEcCC
Confidence            332   33556677765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=1.8e-19  Score=149.63  Aligned_cols=220  Identities=13%  Similarity=0.152  Sum_probs=153.3

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEEccC--Cee--eEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEE
Q 023018           63 HSDEVYSVACSPTDATLVATGGGD----DKGFFWRINQ--GDW--ASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQI  133 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  133 (288)
                      +...+..++|+| ++++|++++.+    +.|.+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            667788899999 67777777765    7999999876  432  3333334556677777  788777766 6889999


Q ss_pred             EeCCCCceeEEe------cc--------CCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCccc-------E------EE
Q 023018          134 WDPSSGNLKCTL------EG--------PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAA-------Y------LN  185 (288)
Q Consensus       134 ~d~~~~~~~~~~------~~--------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------~------~~  185 (288)
                      |++.....+..+      .+        +...+.+++|+|+++++++++ .++.|.+|++....       .      ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            999754332211      11        123468899999999666554 57899999886533       1      11


Q ss_pred             EeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--CcE
Q 023018          186 MFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSV  260 (288)
Q Consensus       186 ~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i  260 (288)
                      ........+..++|+|+|++|++++ .++.|.+|++.++..  +..+.....+...+..++|+|+|++|+++..+  +.|
T Consensus       205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i  284 (361)
T 3scy_A          205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV  284 (361)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred             eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence            1223455678999999999988777 689999999987644  33333333344557899999999998776654  899


Q ss_pred             EEEEcC--CCcE--EEEec---ceEEEEEeec
Q 023018          261 HMVNIT--TGKV--CCLNF---QYTCVAYDLD  285 (288)
Q Consensus       261 ~iwd~~--t~~~--~~~~~---~~~~~~~~~d  285 (288)
                      .+|++.  +++.  +..+.   .+..++|+||
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd  316 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLTGIHPRNFIITPN  316 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEECSSCCCEEEECTT
T ss_pred             EEEEEcCCCCcEEEeeEecCCCCCceEEECCC
Confidence            999995  5653  33332   5678888876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.4e-19  Score=148.89  Aligned_cols=218  Identities=10%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee------c--------cccCcEEEEEEecCCCEEEEE
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI------Q--------GHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~--------~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      ...+......+++  ++..++++...++.|.+|++.....+..+      .        .+...+.+++|+|++++|+++
T Consensus        95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A           95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence            3445556777887  25555555557899999999754322211      1        112346889999999977665


Q ss_pred             e-CCCeEEEEeCCCCce------e-------EEeccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccE--EEEee
Q 023018          126 G-LDGLVQIWDPSSGNL------K-------CTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAY--LNMFS  188 (288)
Q Consensus       126 ~-~dg~i~i~d~~~~~~------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~  188 (288)
                      + .++.|.+|++.....      +       .........+..++|+|+++++++++ .++.|.+|++.+++.  +..+.
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence            5 578999998875431      1       11223445688999999999887776 689999999986643  23232


Q ss_pred             ---ccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCC--CCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCC
Q 023018          189 ---GHGSSVTCGDFTPDGKTICTGSDD--ATLRVWNPK--SGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDG  258 (288)
Q Consensus       189 ---~~~~~i~~~~~~p~~~~l~~~~~d--g~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  258 (288)
                         .+...+..++|+|+|++|+++..+  +.|.+|++.  ++..  +..+..    ...+..++|+|+|++|++++ .++
T Consensus       253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT----GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC----SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC----CCCCceEEECCCCCEEEEEECCCC
Confidence               233456899999999999777665  899999985  4442  223321    34678899999999888887 578


Q ss_pred             cEEEE--EcCCCcEEEEe-----cceEEEEEe
Q 023018          259 SVHMV--NITTGKVCCLN-----FQYTCVAYD  283 (288)
Q Consensus       259 ~i~iw--d~~t~~~~~~~-----~~~~~~~~~  283 (288)
                      .|.+|  |..+|++....     ..+.|+.|.
T Consensus       329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99995  55678776654     456677664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=3.5e-21  Score=170.02  Aligned_cols=199  Identities=15%  Similarity=0.086  Sum_probs=145.9

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC---CCeEEEEeCCC-
Q 023018           64 SDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSS-  138 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-  138 (288)
                      ..+|++++|+| +++.||.++. +|++.||++.+++.......+...+..++|+|+ +++++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            45799999999 7777777665 999999999776655444433368999999999 77777664   45556654432 


Q ss_pred             --CceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC---
Q 023018          139 --GNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---  212 (288)
Q Consensus       139 --~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---  212 (288)
                        +... .+.... .+...+|+|+++ .+++.+.++.+.+||+.+++.......+ .  .+++|+|+|++|++++.+   
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence              2222 333332 355678888876 3344444455669999888765544433 2  788999999999988776   


Q ss_pred             -CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEe
Q 023018          213 -ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 -g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~t~~~~~~~  274 (288)
                       +.|++||+.+++.. .+..   +...+..++|+|||+.|+++..+|  .|++||+.+++.. .+
T Consensus       174 ~~~i~~~d~~~g~~~-~l~~---~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~  233 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VFDS---GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL  233 (582)
T ss_dssp             EEEEEEEETTTCCCE-EECC---SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred             CeEEEEEcCCCCCce-Eeec---CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence             78999999888754 4544   566789999999999999888888  8999999999887 54

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=4e-20  Score=173.47  Aligned_cols=225  Identities=10%  Similarity=0.033  Sum_probs=176.3

Q ss_pred             eeEeecCCC-CEEEEEEcCCCCcEEEEEeCCCeEE-EEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           57 THIFSGHSD-EVYSVACSPTDATLVATGGGDDKGF-FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        57 ~~~~~~h~~-~v~~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ...+..|.. .+..++|+  ++..|+.++.++.+. +|++.+++... +..|...+..++|+|+|++|++++.++.|++|
T Consensus       329 ~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          329 VLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             EEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence            344566777 89999999  566777777788888 89988776544 34788899999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC----------eEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS----------TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      |+.+++....+..+...+.+++|+|+|++|++++.++          .|++||+.+++ +..+..|...+..++|+|+|+
T Consensus       406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            9999988887778888899999999999998887644          89999998877 666777888899999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCce-------eEEE--------------------------c-------CCCccccCeEEEEE
Q 023018          205 TICTGSDDATLRVWNPKSGEN-------IHVI--------------------------R-------GHPYHTEGLTCLTI  244 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~-------~~~~--------------------------~-------~~~~~~~~v~~~~~  244 (288)
                      +|++++.++...+|+......       +..+                          .       ....+...+..+++
T Consensus       485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~  564 (1045)
T 1k32_A          485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  564 (1045)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence            999999888777776543211       0000                          0       00113456889999


Q ss_pred             cCCCCEEEE-------------EeCCCcEEEEEcCCCcEEEEecceEEEEEeec
Q 023018          245 SADSTLALS-------------GSKDGSVHMVNITTGKVCCLNFQYTCVAYDLD  285 (288)
Q Consensus       245 ~~~~~~l~~-------------~~~dg~i~iwd~~t~~~~~~~~~~~~~~~~~d  285 (288)
                      +|++.++++             ......|++||+.+++.......+..++||||
T Consensus       565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~D  618 (1045)
T 1k32_A          565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSAD  618 (1045)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTT
T ss_pred             cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCC
Confidence            999987775             12355899999999987666566778888876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=1.8e-20  Score=165.39  Aligned_cols=213  Identities=13%  Similarity=0.147  Sum_probs=153.9

Q ss_pred             eeEeecCC-CCEEEEEEcCCCCcEEEEEeC---CCeEEEEEccC---CeeeEeeccccCcEEEEEEecCCCE-EEEEeCC
Q 023018           57 THIFSGHS-DEVYSVACSPTDATLVATGGG---DDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQL-LASGGLD  128 (288)
Q Consensus        57 ~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d  128 (288)
                      ...+..|. ..+..++|+| + +++++++.   +....+|.+..   +... .+... ..+...+|+|+++. +++++.+
T Consensus        56 ~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~  131 (582)
T 3o4h_A           56 TVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE  131 (582)
T ss_dssp             EEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS
T ss_pred             cEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCC
Confidence            34455555 6899999999 5 77777765   45556665543   2222 34322 23446788888863 3333444


Q ss_pred             CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC
Q 023018          129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      +.+.+||+.+++.......+.   .+++|+|+|++|++++.+    +.|++||+.+++.. .+..+...+..++|+|+|+
T Consensus       132 ~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~  207 (582)
T 3o4h_A          132 DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK  207 (582)
T ss_dssp             SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC
T ss_pred             CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC
Confidence            555699999887655554333   789999999999988776    78999999888754 5677888899999999999


Q ss_pred             EEEEEeCCC--eEEEEeCCCCceeEEEcCCCccccCeEEEE--------EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          205 TICTGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLT--------ISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       205 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +|+++..++  .|++||+.+++.. .+..   +...+..+.        |+|+|.++++++.+|.+++|++  |+.....
T Consensus       208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~  281 (582)
T 3o4h_A          208 VTAGLETAREARLVTVDPRDGSVE-DLEL---PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP  281 (582)
T ss_dssp             EEEEEECSSCEEEEEECTTTCCEE-ECCC---SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC
T ss_pred             EEEEccCCCeeEEEEEcCCCCcEE-EccC---CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC
Confidence            999888888  8999999988776 5544   334444455        9999998999999999999999  7766433


Q ss_pred             -cceEEEEEe
Q 023018          275 -FQYTCVAYD  283 (288)
Q Consensus       275 -~~~~~~~~~  283 (288)
                       ..+..++|+
T Consensus       282 ~~~v~~~~~s  291 (582)
T 3o4h_A          282 QGNHGRVVLW  291 (582)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCceEEEEec
Confidence             334455555

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=177.45  Aligned_cols=201  Identities=12%  Similarity=0.142  Sum_probs=147.8

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC---cEEEEEEecCCCEEEEEeC---------CCeEEEEeC
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGGL---------DGLVQIWDP  136 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~  136 (288)
                      .++|+| ++.++++ +.|+.|++|++.+++....+..+..   .+.+++|+|+|++|++++.         ++.|++||+
T Consensus        20 ~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWIS-GQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESS-SSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECC-CCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            689999 6666655 4689999999999988777765543   4889999999999998876         689999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe-eccCCCe-----------------EEEE
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SGHGSSV-----------------TCGD  198 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i-----------------~~~~  198 (288)
                      .+++.+.... ....+..++|+|+|+.|+++. ++.|++|++.+++..... .++...+                 .+++
T Consensus        98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            9887621111 124588899999999999886 689999999887765433 2222222                 4899


Q ss_pred             EcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCcee--EEEcC---CCccccCe
Q 023018          199 FTPDGKTICTGSDDA----------------------------------TLRVWNPKSGENI--HVIRG---HPYHTEGL  239 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~~~---~~~~~~~v  239 (288)
                      |+|+|++|++++.|.                                  .|++||+.+++..  ..+..   ...+...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            999999999887552                                  7889999887642  12211   01256678


Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEE----cCCCcEEEE
Q 023018          240 TCLTISADSTLALSGSKD----GSVHMVN----ITTGKVCCL  273 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~d----g~i~iwd----~~t~~~~~~  273 (288)
                      ..++|+||++++++....    ..|++||    +.++++...
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~  297 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT  297 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred             EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence            999999998877764432    2489999    877765543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=1.7e-19  Score=150.99  Aligned_cols=215  Identities=12%  Similarity=0.024  Sum_probs=157.3

Q ss_pred             CCCeeEeecCCCCEEE-----EEEcCCCCcEEEEEeC-CC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE
Q 023018           54 DDSTHIFSGHSDEVYS-----VACSPTDATLVATGGG-DD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG  125 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~-----~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  125 (288)
                      ......+..|......     .+|+| +++.|+.++. +|  .|.+|++.+++.......+...+..+.|+|++++|+.+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~   98 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV   98 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence            4556777777766666     88999 6666666655 67  48888998888777766665555567899999999999


Q ss_pred             eCCCeEEEEeCCCCceeEEeccCCCCEEEEE--EcCCCCEEEEe----------------------cCCCeEEEEECCcc
Q 023018          126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--WHPRGHIVLAG----------------------SEDSTVWMWNADRA  181 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~----------------------~~dg~i~i~d~~~~  181 (288)
                      +.++.|++||+.+++....+..+...+....  ++|++++++..                      ..+..|++||+.++
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            9999999999999987776666665554444  48899888742                      24478999999988


Q ss_pred             cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          182 AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       182 ~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      +... +..+...+..+.|+| +|+.|+.+...      ..|.++|+..+.. ..+.... ....+..+.|+|+|+.|+..
T Consensus       179 ~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~-~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          179 ESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA-EGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             CEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC-TTEEEEEEEECTTSSCEEEE
T ss_pred             ceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC-CCcccccceECCCCCEEEEE
Confidence            6544 444667789999999 99998877753      3788888875543 3443311 11357788999999877554


Q ss_pred             eC-CC----cEEEEEcCCCcEEE
Q 023018          255 SK-DG----SVHMVNITTGKVCC  272 (288)
Q Consensus       255 ~~-dg----~i~iwd~~t~~~~~  272 (288)
                      +. ++    .|++||+.+++...
T Consensus       256 ~~~~~~~~~~l~~~d~~~g~~~~  278 (388)
T 3pe7_A          256 SYLKGSPDRFIYSADPETLENRQ  278 (388)
T ss_dssp             EEETTCCCEEEEEECTTTCCEEE
T ss_pred             ecCCCCCcceEEEEecCCCceEE
Confidence            33 22    39999999998544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=3e-19  Score=148.69  Aligned_cols=220  Identities=8%  Similarity=0.095  Sum_probs=153.5

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeeeEeeccc-cCcEEEEEEecCCCE--EEEEe------------
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGH-KDSVSSLAFSMDGQL--LASGG------------  126 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~--l~~~~------------  126 (288)
                      +...+..++|+| ++++|++++.+ .|.+|++. +++........ .+...+++|+|++++  ++++.            
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            334678899999 77778888877 99999997 77665433211 123456889999994  44543            


Q ss_pred             -CCCeEEEEeCC-CCceeEEec----cCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECC-cccEE--EEee--ccCCCe
Q 023018          127 -LDGLVQIWDPS-SGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNAD-RAAYL--NMFS--GHGSSV  194 (288)
Q Consensus       127 -~dg~i~i~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~i  194 (288)
                       .+|.+.+|++. .++....+.    .+...+.+++|+|+|++++++. .++.|++|++. +++..  ..+.  .+...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             68999999997 465544333    2456799999999999888765 46899999998 66543  3333  235678


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEeCC--CCcee---EEEcCCCc----ccc------CeEEEE-EcCCCCEEEEEeCC
Q 023018          195 TCGDFTPDGKTICTGSD-DATLRVWNPK--SGENI---HVIRGHPY----HTE------GLTCLT-ISADSTLALSGSKD  257 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~~~~----~~~------~v~~~~-~~~~~~~l~~~~~d  257 (288)
                      ..++|+|+|++|++++. ++.|.+|++.  +++..   ..+...+.    +..      .+..++ |+|+|++|++++.+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999999988775 6899998764  55542   22322111    121      478899 99999988876543


Q ss_pred             C------cEEEEEcC-CCcEEEE---e----cceEEEEEee
Q 023018          258 G------SVHMVNIT-TGKVCCL---N----FQYTCVAYDL  284 (288)
Q Consensus       258 g------~i~iwd~~-t~~~~~~---~----~~~~~~~~~~  284 (288)
                      .      .|.+|++. +|++...   .    .....++|+|
T Consensus       276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            2      89999996 6776531   2    2356677777

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=3.6e-18  Score=140.18  Aligned_cols=218  Identities=13%  Similarity=0.120  Sum_probs=166.3

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCC------------------------CeEEEEEccCCeeeEeec-cccCcEEEEEEecC
Q 023018           64 SDEVYSVACSPTDATLVATGGGD------------------------DKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMD  118 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~  118 (288)
                      -+.+.+++++| +++++++...+                        +.|.+||..+++.+..+. .+-.....++++|+
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            35699999999 67788887776                        479999998888776654 34456789999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-eeEEec---------cCCCCEEEEEEcC-CCCEEEEec-CCCeEEEEECCcccEEEE
Q 023018          119 GQLLASGGLDGLVQIWDPSSGN-LKCTLE---------GPGGGVEWVSWHP-RGHIVLAGS-EDSTVWMWNADRAAYLNM  186 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---------~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~  186 (288)
                      ++++++...++.|++|+..... .+..+.         .+......++++| ++.++++.+ .++.|++|+ .++..+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9988888889999999976542 444442         3344689999999 788888886 689999999 56776666


Q ss_pred             eeccC----------CCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE-
Q 023018          187 FSGHG----------SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-  254 (288)
Q Consensus       187 ~~~~~----------~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  254 (288)
                      +....          ..+..++++|+ +.++++...++.|++|+..+++.+..+.... +...+..++++| +..+++. 
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET-TEEEEEEC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC-CEEEEeCC
Confidence            64322          34899999998 6666777778899999998888888875432 456788999999 4444333 


Q ss_pred             ------eCCCcEEEEEcCCCcEEEEe-------cceEEEEEeec
Q 023018          255 ------SKDGSVHMVNITTGKVCCLN-------FQYTCVAYDLD  285 (288)
Q Consensus       255 ------~~dg~i~iwd~~t~~~~~~~-------~~~~~~~~~~d  285 (288)
                            ..+..|++|++.+|+.+..+       ..+.+++++++
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence                  33458999999999999886       23678888776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=1.1e-19  Score=164.83  Aligned_cols=199  Identities=15%  Similarity=0.194  Sum_probs=147.7

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCc-----EEEEEEecCCCEEEEEeCC---------CeE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS-----VSSLAFSMDGQLLASGGLD---------GLV  131 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~d---------g~i  131 (288)
                      ....++|+| ++.+++++  ||.|++|++.+++....+.+|...     ...+.|+|+|++|+.++.+         +.+
T Consensus        18 ~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           18 KLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            456899999 77888876  899999999999887777766532     2447899999999998875         667


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-ccCCCe----------------
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSV----------------  194 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i----------------  194 (288)
                      .+||+.+++.. .+..+...+...+|||+|+.||.+. ++.|++|++.++...+... ++...+                
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            79999998754 3555667899999999999999885 5899999998876543222 222222                


Q ss_pred             -EEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCC---Cc--eeEEEcCC
Q 023018          195 -TCGDFTPDGKTICTGSDDA------------------------------------TLRVWNPKS---GE--NIHVIRGH  232 (288)
Q Consensus       195 -~~~~~~p~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~~~  232 (288)
                       ..+.|||||++|+.++.|.                                    .|++||+.+   +.  ....+...
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3489999999998875321                                    588899988   63  22333321


Q ss_pred             C---ccccCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCCCc
Q 023018          233 P---YHTEGLTCLTISADSTLALSGSK----DGSVHMVNITTGK  269 (288)
Q Consensus       233 ~---~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~t~~  269 (288)
                      .   .+...+..++|+|||++++....    +..|++||+.+|+
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            1   14566889999999997665432    3479999999987

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=4.5e-18  Score=141.32  Aligned_cols=220  Identities=15%  Similarity=0.099  Sum_probs=151.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeeeEeeccc------cCcEEEEEEecC
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGH------KDSVSSLAFSMD  118 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~------~~~i~~~~~~~~  118 (288)
                      +.+..+..+..+  .++|+| ++++++++.          .++.|.+||..+.+.+..+...      ......++++|+
T Consensus        42 ~~~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd  118 (361)
T 2oiz_A           42 KFLGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD  118 (361)
T ss_dssp             CEEEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT
T ss_pred             eEEEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC
Confidence            445566666665  899999 677777765          3578999999998888777532      234567999999


Q ss_pred             CCEEEEEeC--CCeEEEEeCCCCceeEE-eccCCCCEEEEEEcCCC-CEEEEecCCCe----------------------
Q 023018          119 GQLLASGGL--DGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRG-HIVLAGSEDST----------------------  172 (288)
Q Consensus       119 ~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~----------------------  172 (288)
                      |++|+++..  ++.|.+||+.+++.+.. +....  ...+.+.|.+ ..+++.+.||.                      
T Consensus       119 g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~  196 (361)
T 2oiz_A          119 GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF  196 (361)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred             CCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence            999988864  68999999999988777 44321  1222333322 23333333444                      


Q ss_pred             --------------------------EEEEECCccc--EEEEeecc----------CCCeEEEEEcCCCCEEEEEeC---
Q 023018          173 --------------------------VWMWNADRAA--YLNMFSGH----------GSSVTCGDFTPDGKTICTGSD---  211 (288)
Q Consensus       173 --------------------------i~i~d~~~~~--~~~~~~~~----------~~~i~~~~~~p~~~~l~~~~~---  211 (288)
                                                |+++|+....  .+..+...          ......++|+|++++++++..   
T Consensus       197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~  276 (361)
T 2oiz_A          197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG  276 (361)
T ss_dssp             CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred             cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence                                      4444443221  11111000          011112688999888887653   


Q ss_pred             --------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEe----cce
Q 023018          212 --------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVCCLN----FQY  277 (288)
Q Consensus       212 --------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~--~~~~~~----~~~  277 (288)
                              .+.|.+||+.+++.+..+..   +.  +..++|+|+|++|++++. +.|.+||+.++  +++..+    ...
T Consensus       277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P  350 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEAS  350 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSE
T ss_pred             CcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCc
Confidence                    34899999999999998876   33  889999999999998887 99999999999  999886    356


Q ss_pred             EEEEEeec
Q 023018          278 TCVAYDLD  285 (288)
Q Consensus       278 ~~~~~~~d  285 (288)
                      ..++++|+
T Consensus       351 ~~~~~~p~  358 (361)
T 2oiz_A          351 LQVQFHPV  358 (361)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCC
Confidence            78888876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=1.1e-16  Score=128.54  Aligned_cols=217  Identities=13%  Similarity=0.171  Sum_probs=161.3

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec------cccCcEEEEEEe-cCCCEEEEEeC-CCeEEE
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDSVSSLAFS-MDGQLLASGGL-DGLVQI  133 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~i~~~~~~-~~~~~l~~~~~-dg~i~i  133 (288)
                      +|-..+.++++++ ++.++++...++.|.+|+.. ++.+..+.      .+...+..+++. +++.++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3446789999999 67788888888999999987 55555553      234567899995 66665555533 789999


Q ss_pred             EeCCCCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEe
Q 023018          134 WDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       134 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      |+ .+++.+..+.. +...+..++++|+++++++...++.|++|+. .++.+..+.  .+...+..++++|+++++++..
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            99 56766666643 3456899999999998888888899999996 455555554  3445689999999998777777


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEec------ceEEEEEe
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVCCLNF------QYTCVAYD  283 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~t~~~~~~~~------~~~~~~~~  283 (288)
                      .++.|++||.. +..+..+.... +...+..++++++|+++++...++ .|++|+. +++.+..+.      .+.+++++
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~  259 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  259 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             CCCEEEEEcCC-CCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence            78999999974 56666664321 235688999999999888887776 9999995 566666551      24567777


Q ss_pred             ec
Q 023018          284 LD  285 (288)
Q Consensus       284 ~d  285 (288)
                      ++
T Consensus       260 ~~  261 (286)
T 1q7f_A          260 DD  261 (286)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=4.5e-18  Score=141.56  Aligned_cols=198  Identities=15%  Similarity=0.194  Sum_probs=141.3

Q ss_pred             EEEEEEcCCCCc--EEEEEe-------------CCCeEEEEEcc-CCeeeEeec----cccCcEEEEEEecCCCEEEEEe
Q 023018           67 VYSVACSPTDAT--LVATGG-------------GDDKGFFWRIN-QGDWASEIQ----GHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        67 v~~~~~~~~~~~--~l~~~~-------------~dg~i~iw~~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      +.+++|+| +++  +++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|+|++|+++.
T Consensus        85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            45688899 566  455553             68999999997 455544333    2456789999999999888776


Q ss_pred             C-CCeEEEEeCC-CCcee--EEec--cCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECC--cccEE---EEeec-----
Q 023018          127 L-DGLVQIWDPS-SGNLK--CTLE--GPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNAD--RAAYL---NMFSG-----  189 (288)
Q Consensus       127 ~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~-----  189 (288)
                      . ++.|++|++. +++..  ..+.  .+...+..++|+|+|+++++++. ++.|.+|++.  +++..   ..+..     
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            4 6799999998 67643  2333  23566999999999998887764 6899999765  45432   12221     


Q ss_pred             --cCC------CeEEEE-EcCCCCEEEEEeCCC------eEEEEeCC-CCceeEE---EcCCCccccCeEEEEEcC---C
Q 023018          190 --HGS------SVTCGD-FTPDGKTICTGSDDA------TLRVWNPK-SGENIHV---IRGHPYHTEGLTCLTISA---D  247 (288)
Q Consensus       190 --~~~------~i~~~~-~~p~~~~l~~~~~dg------~i~i~d~~-~~~~~~~---~~~~~~~~~~v~~~~~~~---~  247 (288)
                        +..      .+..++ |+|+|++|++++.+.      .|.+|++. +++....   +..   +...+..++|+|   +
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~---~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT---PTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC---SSCCTTCCCEEECTTC
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec---CCCCcccceecCCCcC
Confidence              121      488999 999999988776433      89999986 5654331   222   233456789999   8


Q ss_pred             CCEEEEEeCC-CcEEEEEcCCC
Q 023018          248 STLALSGSKD-GSVHMVNITTG  268 (288)
Q Consensus       248 ~~~l~~~~~d-g~i~iwd~~t~  268 (288)
                      |++|++++.+ +.|.+|++...
T Consensus       321 g~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          321 DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEEEcCCCeEEEEEEchh
Confidence            9999988764 89999999876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=6.2e-20  Score=165.87  Aligned_cols=212  Identities=14%  Similarity=0.167  Sum_probs=148.5

Q ss_pred             CCCeeEeecCCC---CEEEEEEcCCCCcEEEEEeC---------CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCE
Q 023018           54 DDSTHIFSGHSD---EVYSVACSPTDATLVATGGG---------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL  121 (288)
Q Consensus        54 ~~~~~~~~~h~~---~v~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  121 (288)
                      .+....+.+|..   .|.+++|+| ++++|++++.         ++.|++||+.+++.+.... ....+..++|+|+|++
T Consensus        46 g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           46 GQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSK  123 (719)
T ss_dssp             CCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTC
T ss_pred             CcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCE
Confidence            344455555543   489999999 7777777765         6899999999887631111 1246888999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEec-cCCCCE-----------------EEEEEcCCCCEEEEecCCC------------
Q 023018          122 LASGGLDGLVQIWDPSSGNLKCTLE-GPGGGV-----------------EWVSWHPRGHIVLAGSEDS------------  171 (288)
Q Consensus       122 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i-----------------~~~~~~~~~~~l~~~~~dg------------  171 (288)
                      |+.+. ++.|++|++.+++...... ++...+                 .+++|+|+|+.|++++.+.            
T Consensus       124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~  202 (719)
T 1z68_A          124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG  202 (719)
T ss_dssp             EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred             EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence            99886 7899999998887654332 222222                 4899999999999987542            


Q ss_pred             ----------------------eEEEEECCcccEE--------EEeeccCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 023018          172 ----------------------TVWMWNADRAAYL--------NMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRV  217 (288)
Q Consensus       172 ----------------------~i~i~d~~~~~~~--------~~~~~~~~~i~~~~~~p~~~~l~~~~~d----g~i~i  217 (288)
                                            .|++||+.+++..        ..+..|...+..++|+|+++++++....    ..|.+
T Consensus       203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~  282 (719)
T 1z68_A          203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI  282 (719)
T ss_dssp             SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred             CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence                                  7899999887642        1233577789999999998777764432    24889


Q ss_pred             Ee----CCCCceeEEE----cCCCccccCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEEcCCCcEE
Q 023018          218 WN----PKSGENIHVI----RGHPYHTEGLT-----CLTISADSTLALS--GSKDG--SVHMVNITTGKVC  271 (288)
Q Consensus       218 ~d----~~~~~~~~~~----~~~~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~t~~~~  271 (288)
                      ||    +.+++....+    ..   +...+.     .+.|+|+|+.|+.  +..+|  .|++|++.+++..
T Consensus       283 ~d~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~  350 (719)
T 1z68_A          283 CDFREDWQTWDCPKTQEHIEES---RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI  350 (719)
T ss_dssp             EEECSSSSSEECCGGGEEEEEC---SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE
T ss_pred             EcccCCCCCCceEEEEeccccc---CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE
Confidence            99    7776544333    12   334444     6799999986544  44555  5778888877743

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=9.2e-17  Score=128.96  Aligned_cols=201  Identities=13%  Similarity=0.160  Sum_probs=151.3

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           63 HSDEVYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      |...+.++++.+.++.++++... ++.|++|+ .+++.+..+.. +...+.+++++|+++++++...++.|.+|+.. ++
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            44678999995326777766643 78999999 55666666542 34568999999999987777788999999964 55


Q ss_pred             eeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc--CCCeEEEEEcCCCCEEEEEeCCC-eE
Q 023018          141 LKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDA-TL  215 (288)
Q Consensus       141 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~p~~~~l~~~~~dg-~i  215 (288)
                      .+..+.  .+...+..++++++++++++...++.|++|+. .++.+..+...  ...+..++++|+|+++++...++ .|
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            555554  34456899999999998888888899999997 45556666433  35789999999998888887775 99


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      .+||. +++.+..+.... ....+..++++|+|+++++ +.++.|++|++....
T Consensus       232 ~~~~~-~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          232 TIFTQ-DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEECT-TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             EEECC-CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            99996 466666665422 2234789999999987776 579999999987643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=7.4e-17  Score=130.22  Aligned_cols=221  Identities=12%  Similarity=0.111  Sum_probs=163.4

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      +...+..+..+.....+++|+|++..+++++..++.|..|+..++  ...+..+...+.+++++++++++++...++.|.
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            345556677777889999999944448888888999999999877  556666777889999999999877777778999


Q ss_pred             EEeCCCCceeEEeccC----CCCEEEEEEcCCCCEEEE----ec-------------CCCeEEEEECCcccEEEEeeccC
Q 023018          133 IWDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLA----GS-------------EDSTVWMWNADRAAYLNMFSGHG  191 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~  191 (288)
                      +||..+++........    ...+..++++|+|+++++    |+             ..+.|..++.. ++ +..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence            9999888755443221    234677999999998887    33             13567777765 44 33444556


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce---eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .....++|+|+++.|++.+.++.|.+|++. ++..   ...+ ..  ....+..++++++|+++++.  ++.|.+|+.. 
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC--CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            678899999999999777778999999986 4544   2333 21  44556789999999876665  7899999986 


Q ss_pred             CcEEEEe---cceEEEEEe
Q 023018          268 GKVCCLN---FQYTCVAYD  283 (288)
Q Consensus       268 ~~~~~~~---~~~~~~~~~  283 (288)
                      |+.+..+   ..+.+++|+
T Consensus       246 g~~~~~~~~~~~~~~~~f~  264 (296)
T 3e5z_A          246 GDELGRVLTPQTTSNLCFG  264 (296)
T ss_dssp             SCEEEEEECSSCCCEEEEE
T ss_pred             CCEEEEEECCCCceeEEEE
Confidence            7776665   226777774

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=6.9e-17  Score=132.50  Aligned_cols=203  Identities=16%  Similarity=0.168  Sum_probs=156.0

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEee---------ccccCcEEEEEEec-CCCEEEEEe-CCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEI---------QGHKDSVSSLAFSM-DGQLLASGG-LDG  129 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~dg  129 (288)
                      ++-.....++++| ++.++++...++.|++|+..... .+..+         ..+-.....++++| ++.++++.+ .++
T Consensus        88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            3445789999999 67788888889999999986542 44444         23344678999999 787777776 689


Q ss_pred             eEEEEeCCCCceeEEeccCC----------CCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPG----------GGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTC  196 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~  196 (288)
                      .|++|+ .+++.+..+....          .....++++|+ +.++++...++.|++|+..+++.+..+.  .+...+..
T Consensus       167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            999999 5677666664322          24899999998 7778888889999999998888888774  35567889


Q ss_pred             EEEcCCCCEEEEE-------eCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          197 GDFTPDGKTICTG-------SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       197 ~~~~p~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ++++| +..+++.       ..+..|++|++.+++.+..+.....+...+..++++|+|.++++...++.|++|++..
T Consensus       246 ~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          246 ISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            99999 3333332       2345899999999998888753333567789999999998888888899999999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=2.8e-16  Score=128.90  Aligned_cols=228  Identities=14%  Similarity=0.088  Sum_probs=164.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----C
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----G  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g  129 (288)
                      ......+.++...+.+++|+| ++.+++++..++.|.+|+..+++.......+...+.+++++|++++++++..+    +
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred             cceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence            344556677777889999999 67788888888999999998877655443466789999999999877777666    6


Q ss_pred             eEEEEeCCCCceeEEec--cCCCCEEEEEEcCCCCEEEEecC------CCeEEEEECCcccEEEEeeccCCCeEEEEEcC
Q 023018          130 LVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP  201 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p  201 (288)
                      .|.+||..++.....+.  .....+..++++|+++++++...      .+.|..++..+++.... ......+..++|+|
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALST  191 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECT
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECC
Confidence            89999998877654433  23456899999999988777654      35677777765544332 22334578999999


Q ss_pred             CCCEEEEE-eCCCeEEEEeCCC-CceeEEE-----cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          202 DGKTICTG-SDDATLRVWNPKS-GENIHVI-----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       202 ~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++++|+.+ +.++.|.+||+.+ +..+..+     .... ....+..++++++|+++++...++.|.+|+. +++.+..+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            99876554 4578999999864 3333221     1111 1135778999999998888777899999998 56666655


Q ss_pred             c----------ceEEEEEeec
Q 023018          275 F----------QYTCVAYDLD  285 (288)
Q Consensus       275 ~----------~~~~~~~~~d  285 (288)
                      .          .+.+++|++|
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTT
T ss_pred             EcCCCccccccCcceEEECCC
Confidence            1          3677888765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=8e-18  Score=150.67  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=148.3

Q ss_pred             eeEeecCCCCEE---------EEEEc--CCCCc-EEEEEeCCCeEEEEEcc--C-CeeeEeecc-----ccCcEEEEEEe
Q 023018           57 THIFSGHSDEVY---------SVACS--PTDAT-LVATGGGDDKGFFWRIN--Q-GDWASEIQG-----HKDSVSSLAFS  116 (288)
Q Consensus        57 ~~~~~~h~~~v~---------~~~~~--~~~~~-~l~~~~~dg~i~iw~~~--~-~~~~~~~~~-----~~~~i~~~~~~  116 (288)
                      ...+..|...+.         ..+|+  |++.. ++++...+..|.+|++.  . +. ...+..     |...+.+++|+
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence            344555554544         55565  85544 44444446677777765  2 33 344544     56678899999


Q ss_pred             cCCCEEEEEeCC----------CeEEEEeCCC------CceeEEec-cCCCCEEEEEEcCCCCEEEEecCC--------C
Q 023018          117 MDGQLLASGGLD----------GLVQIWDPSS------GNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSED--------S  171 (288)
Q Consensus       117 ~~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g  171 (288)
                      |+|++|++++.+          ..|++|++.+      ++. ..+. .+...+..++|+|+|++|+.++.+        .
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~  217 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT  217 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence            999999988876          5899999987      544 3444 455678889999999999887754        3


Q ss_pred             eEEEEECC-cc---cEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceeEEEcCCCccc-----cCeE
Q 023018          172 TVWMWNAD-RA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIHVIRGHPYHT-----EGLT  240 (288)
Q Consensus       172 ~i~i~d~~-~~---~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-----~~v~  240 (288)
                      .|++||+. ++   +.......+...+..+.|+|+|++++++..++  .|.+||+.+++....+.......     ..+.
T Consensus       218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMR  297 (662)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCC
T ss_pred             EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCc
Confidence            79999998 56   44444444578899999999999888888888  67778876666443333211010     0156


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEE--EcCCCcEEEEe
Q 023018          241 CLTISADSTLALSGSKDGSVHMV--NITTGKVCCLN  274 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iw--d~~t~~~~~~~  274 (288)
                      .++|+|++.++++++. +.+++|  |+.+++ +..+
T Consensus       298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          298 WFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             SEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC
T ss_pred             eEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe
Confidence            7899999999999988 999999  666665 4444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=2.7e-17  Score=131.38  Aligned_cols=189  Identities=13%  Similarity=0.099  Sum_probs=157.8

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeecccc-CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCC-CCEEE
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEW  154 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~  154 (288)
                      +++|++++.++.|++||..+++.+..+..+. ..+.++.+.|+|++|+  +.++.|..||. +++.+..+..+. ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            4788999999999999999999999998765 4688999999999888  34778999998 899988888653 46889


Q ss_pred             EEEcCCCCEEEEecC-CCeEEEEECCcccEEEEeec------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018          155 VSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSG------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH  227 (288)
Q Consensus       155 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~  227 (288)
                      +.+.++|+.+++.+. ++.|..++. +++.+..+..      +......+++.++|++|++...++.|..||.. |+.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            999999999999887 788888885 6777766642      11244566789999999999999999999998 99888


Q ss_pred             EEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+...    ..+.++...++++++++++.+++|..+|..||+.+..+
T Consensus       160 ~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          160 SVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            88752    34556778899999999888889999999999998887

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=5.3e-18  Score=151.82  Aligned_cols=212  Identities=17%  Similarity=0.130  Sum_probs=155.8

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEE--eCCCeEEEEEccCCeeeEeeccccCcEE---------EEEEe--cCCCE-E
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATG--GGDDKGFFWRINQGDWASEIQGHKDSVS---------SLAFS--MDGQL-L  122 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~---------~~~~~--~~~~~-l  122 (288)
                      ...+.+|...+..++|++ +..+++..  +.++...||....+.....+..+...+.         ...|+  |++++ |
T Consensus        16 ~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           16 AALVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            345778999999999998 66666666  5578999999755555566666665555         56666  99998 7


Q ss_pred             EEEeC-CCeEEEEeCC--C-CceeEEecc-----CCCCEEEEEEcCCCCEEEEecCC----------CeEEEEECCc---
Q 023018          123 ASGGL-DGLVQIWDPS--S-GNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED----------STVWMWNADR---  180 (288)
Q Consensus       123 ~~~~~-dg~i~i~d~~--~-~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~---  180 (288)
                      +.++. +..|.++++.  . +. ...+..     +...+..++|+|+|+.|++++.+          ..|++|++.+   
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            76653 5677777776  3 43 344444     45678899999999999998876          5899999987   


Q ss_pred             ---ccEEEEee-ccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CC---ceeEEEcCCCccccCeEEEEE
Q 023018          181 ---AAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDD--------ATLRVWNPK-SG---ENIHVIRGHPYHTEGLTCLTI  244 (288)
Q Consensus       181 ---~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~v~~~~~  244 (288)
                         +.. ..+. .+...+..++|+|+|++|+.++.+        ..|++||+. ++   +.......   +...+..+.|
T Consensus       174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~~~~~~~~~~  249 (662)
T 3azo_A          174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---PEEAIAQAEW  249 (662)
T ss_dssp             TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---TTBCEEEEEE
T ss_pred             ccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---CCceEcceEE
Confidence               554 4444 455678889999999999887754        379999998 56   33333332   3567899999


Q ss_pred             cCCCCEEEEEeCCC--cEEEEEcCCCcEEEEe
Q 023018          245 SADSTLALSGSKDG--SVHMVNITTGKVCCLN  274 (288)
Q Consensus       245 ~~~~~~l~~~~~dg--~i~iwd~~t~~~~~~~  274 (288)
                      +|+|+++++++.+|  .|++|++.+++.....
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~  281 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLC  281 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence            99999888888888  6777777778765544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=5.4e-18  Score=141.90  Aligned_cols=227  Identities=16%  Similarity=0.106  Sum_probs=153.2

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEE--EecCCCEEEEE-------
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA--FSMDGQLLASG-------  125 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~-------  125 (288)
                      +..+...+|...+..++|+| +++.|+.++.++.|++|++.+++....+..+...+....  ++|++++++..       
T Consensus        71 ~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~  149 (388)
T 3pe7_A           71 VATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW  149 (388)
T ss_dssp             EEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence            33444455666666788999 777888888889999999999887766665555554444  48899887743       


Q ss_pred             ---------------eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCC------CeEEEEECCcccE
Q 023018          126 ---------------GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSED------STVWMWNADRAAY  183 (288)
Q Consensus       126 ---------------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~  183 (288)
                                     ..++.|.+||+.+++..... .+...+..++|+| +++.|+.+...      ..|.++++..+..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM  228 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence                           23468999999988755444 4556789999999 99988877653      3788888866543


Q ss_pred             EEEeeccC--CCeEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCceeEEEcCCCcccc---CeEEEEEcCCCCEEEE
Q 023018          184 LNMFSGHG--SSVTCGDFTPDGKTICTGSD-DA----TLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALS  253 (288)
Q Consensus       184 ~~~~~~~~--~~i~~~~~~p~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~  253 (288)
                       ..+..+.  ..+..+.|+|+|+.|+..+. ++    .|++||+.+++....... ..+..   ....+.|+|+|+.|+.
T Consensus       229 -~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~~~~~~~spdg~~l~~  306 (388)
T 3pe7_A          229 -RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM-PACSHLMSNYDGSLMVGDGSDAPV  306 (388)
T ss_dssp             -EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE-CCEEEEEECTTSSEEEEEECCC--
T ss_pred             -EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC-CCceeeeecCCCCeEccCCCccee
Confidence             3333333  35778899999998765443 22    399999998875332221 10100   0112379999988775


Q ss_pred             E---------eCCCcEEEEEcCCCcEEEEe--c------------ceEEEEEeec
Q 023018          254 G---------SKDGSVHMVNITTGKVCCLN--F------------QYTCVAYDLD  285 (288)
Q Consensus       254 ~---------~~dg~i~iwd~~t~~~~~~~--~------------~~~~~~~~~d  285 (288)
                      .         ..+..|++||+.+++.....  .            ....++|+||
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD  361 (388)
T 3pe7_A          307 DVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD  361 (388)
T ss_dssp             ----------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred             EeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC
Confidence            3         45678999999998765443  1            2456677776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=2.4e-18  Score=144.29  Aligned_cols=213  Identities=11%  Similarity=-0.006  Sum_probs=145.3

Q ss_pred             EEEEEEcCCCCcEEEEE-eCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           67 VYSVACSPTDATLVATG-GGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~-~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      +..++|+| +++.|+.. ..+  ..|.+|++.+++.......+......+.|+|++++|+.++.++.|++|++.+++...
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            67789999 56555544 333  468888988877654443332222337899999999999999999999999887666


Q ss_pred             EeccCCCCEEE-------------------EEEcCCCCEEEEe-----cCCCeEEEEECCcccEEEEeeccCCCeEEEEE
Q 023018          144 TLEGPGGGVEW-------------------VSWHPRGHIVLAG-----SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF  199 (288)
Q Consensus       144 ~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  199 (288)
                      ....+......                   +.|+|+++.++.+     ..+..|++||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            55544432222                   3457777766554     35678999999888765444 46677899999


Q ss_pred             cC-CCCEEEEEeCC------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCC
Q 023018          200 TP-DGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITT  267 (288)
Q Consensus       200 ~p-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t  267 (288)
                      +| ++..|+..+.+      ..|.+||+.++.. ..+... .....+..+.|+|+|+.|+.++.+     +.|++||+.+
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH-AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC-CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc-CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            99 78877766543      3688999876543 333321 013357889999999977766543     4499999999


Q ss_pred             CcEEEEe--cceEEEEEee
Q 023018          268 GKVCCLN--FQYTCVAYDL  284 (288)
Q Consensus       268 ~~~~~~~--~~~~~~~~~~  284 (288)
                      ++.....  .... ++|+|
T Consensus       274 g~~~~l~~~~~~~-~~~s~  291 (396)
T 3c5m_A          274 LENEEVMVMPPCS-HLMSN  291 (396)
T ss_dssp             CCEEEEEECCSEE-EEEEC
T ss_pred             CCeEEeeeCCCCC-CCccC
Confidence            8765543  3333 66766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=2.4e-16  Score=142.26  Aligned_cols=209  Identities=12%  Similarity=0.075  Sum_probs=148.7

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeC-CC----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe------
Q 023018           62 GHSDEVYSVACSPTDATLVATGGG-DD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL------  130 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------  130 (288)
                      +|...+..++|+| ++++||.+.. .|    .|++||+.+++.+.....+ ..+..++|+|+++.|+.++.++.      
T Consensus       122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence            3555789999999 6666665543 33    8999999999876643322 23667999999999998887765      


Q ss_pred             ----------EEEEeCCCCcee--EEecc--CCCCEEEEEEcCCCCEEEEecC-----CCeEEEEECCc------cc-EE
Q 023018          131 ----------VQIWDPSSGNLK--CTLEG--PGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNADR------AA-YL  184 (288)
Q Consensus       131 ----------i~i~d~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~  184 (288)
                                |++|++.+++..  ..+..  +...+..+.|+|+|++|+.++.     +..|++||+.+      +. ..
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      999999887632  22332  3455789999999998888764     56899999976      43 35


Q ss_pred             EEeeccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018          185 NMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       185 ~~~~~~~~~i~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                      ..+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++..  ...+..+. ....+..+.|++++.++++...++
T Consensus       280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETT
T ss_pred             EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECC
Confidence            555556555554 488999988776653    3699999987642  34443321 113577889998788888888887


Q ss_pred             --cEEEEEcCCCcEEEEe
Q 023018          259 --SVHMVNITTGKVCCLN  274 (288)
Q Consensus       259 --~i~iwd~~t~~~~~~~  274 (288)
                        .|++|++.+|+.+..+
T Consensus       358 ~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             EEEEEEEETTTCCEEEEE
T ss_pred             EEEEEEEECCCCCEEEec
Confidence              4677788788876665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=1.4e-16  Score=131.34  Aligned_cols=200  Identities=16%  Similarity=0.199  Sum_probs=137.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCC---C--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC-----------
Q 023018           65 DEVYSVACSPTDATLVATGGGD---D--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-----------  128 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------  128 (288)
                      ..+..++|+| +++.||..+.+   +  .|.+|++.+++.......+ . +..++|+|+++.|+.++.+           
T Consensus        59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            4588899999 66666655543   3  4788888887765555433 3 8999999999988887632           


Q ss_pred             ----------------CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC---------eEEEEECCcccE
Q 023018          129 ----------------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---------TVWMWNADRAAY  183 (288)
Q Consensus       129 ----------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~  183 (288)
                                      ..|++|++.+++.+..+.. . .+..++|+|+| +++++..++         .|+++|  +++ 
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-  209 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-  209 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-
Confidence                            5799999988876344444 3 68899999999 777775542         455555  444 


Q ss_pred             EEEeeccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCceeEEEcCCCccccCeEE-EEEcCCCCEEEEE
Q 023018          184 LNMFSGHGSSVTCGDFTPDGKTICTGSDD--------ATLRVWNPKSGENIHVIRGHPYHTEGLTC-LTISADSTLALSG  254 (288)
Q Consensus       184 ~~~~~~~~~~i~~~~~~p~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~  254 (288)
                      ...+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +++....+..   +...+.. +.|+ ++ +++++
T Consensus       210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EEEEE
T ss_pred             eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EEEEE
Confidence            3334334 455544  9999998877744        4688888  5544332222   4556775 8999 88 88899


Q ss_pred             eCCCcEEEEEcCCCcEEEEe---cceEEEEEee
Q 023018          255 SKDGSVHMVNITTGKVCCLN---FQYTCVAYDL  284 (288)
Q Consensus       255 ~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~  284 (288)
                      +.++.+++| +.+++.....   ..+.++++++
T Consensus       280 ~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          280 FEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             ecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence            999999999 8877765554   2344555544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=2.4e-17  Score=149.43  Aligned_cols=215  Identities=9%  Similarity=0.030  Sum_probs=148.7

Q ss_pred             CCCeeEeecCCCC-----EEEEEEcCCCCcEEEEEeCC---------CeEEEEEccCCeeeEeeccccCcEEEEEEecCC
Q 023018           54 DDSTHIFSGHSDE-----VYSVACSPTDATLVATGGGD---------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG  119 (288)
Q Consensus        54 ~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  119 (288)
                      ++....+.+|...     ...++|+| +++.|+.++.+         +.+.+||+.+++.. .+..|...+...+|+|+|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG  123 (740)
T 4a5s_A           46 GNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVG  123 (740)
T ss_dssp             CCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSST
T ss_pred             CceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCC
Confidence            3445566666532     24478999 77777777765         56789999998754 456677889999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEec-cCCCCE-----------------EEEEEcCCCCEEEEecCCC----------
Q 023018          120 QLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGV-----------------EWVSWHPRGHIVLAGSEDS----------  171 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i-----------------~~~~~~~~~~~l~~~~~dg----------  171 (288)
                      +.||.+. ++.|++|++.+++..+... ++...+                 ..+.|+|+|+.|+.++.|.          
T Consensus       124 ~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          124 HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            9998885 6899999998877544221 222222                 3589999999999875221          


Q ss_pred             --------------------------eEEEEECCc---cc--EEEEee------ccCCCeEEEEEcCCCCEEEEEeC---
Q 023018          172 --------------------------TVWMWNADR---AA--YLNMFS------GHGSSVTCGDFTPDGKTICTGSD---  211 (288)
Q Consensus       172 --------------------------~i~i~d~~~---~~--~~~~~~------~~~~~i~~~~~~p~~~~l~~~~~---  211 (288)
                                                .|++||+.+   ++  ....+.      ++...+..++|+|+|+.++....   
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence                                      588899988   62  222333      26677899999999997665543   


Q ss_pred             -CCeEEEEeCCCCc----e--eEEE--cCCCccccCe-----EEEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCcEEEE
Q 023018          212 -DATLRVWNPKSGE----N--IHVI--RGHPYHTEGL-----TCLTISADSTLAL-SGSK-D--GSVHMVNITTGKVCCL  273 (288)
Q Consensus       212 -dg~i~i~d~~~~~----~--~~~~--~~~~~~~~~v-----~~~~~~~~~~~l~-~~~~-d--g~i~iwd~~t~~~~~~  273 (288)
                       +..|++||+.+++    +  ...+  ..   +...+     ....|+|||+.|+ ..+. +  ..|++|++.+++....
T Consensus       283 ~~~~i~~~d~~tg~~~~~~~~~~~l~~~~---~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l  359 (740)
T 4a5s_A          283 NYSVMDICDYDESSGRWNCLVARQHIEMS---TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI  359 (740)
T ss_dssp             TEEEEEEEEEETTTTEEEECGGGCEEEEC---SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred             CEEEEEEEECCCCccccceeEEEEeeecc---CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence             2379999998886    1  1111  21   22222     3678999999876 5553 3  3688899988776654


Q ss_pred             e
Q 023018          274 N  274 (288)
Q Consensus       274 ~  274 (288)
                      .
T Consensus       360 T  360 (740)
T 4a5s_A          360 T  360 (740)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=2.8e-15  Score=122.89  Aligned_cols=221  Identities=9%  Similarity=-0.020  Sum_probs=160.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecccc-----CcEEEEEEecCCCEEEEEe--
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK-----DSVSSLAFSMDGQLLASGG--  126 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~--  126 (288)
                      .+.+..+. .......+++++ ++.++++...++.|.+||..+++....+....     .....+++ . +..|+++.  
T Consensus        74 ~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~  149 (328)
T 3dsm_A           74 FKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWS  149 (328)
T ss_dssp             CCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECT
T ss_pred             cEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCC
Confidence            44555554 345688999988 55665555478999999999998877665332     13456777 3 44555554  


Q ss_pred             CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC----------CeEEEEECCcccEEEEeecc-CCCeE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED----------STVWMWNADRAAYLNMFSGH-GSSVT  195 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~  195 (288)
                      .++.|.++|+.+++....+.... ....++++|+|++++++..+          +.|.++|..+++....+... ...+.
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            48899999999998888776543 46788999999877777655          78999999998877766532 34689


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCcE
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG----SKDGSVHMVNITTGKV  270 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~iwd~~t~~~  270 (288)
                      .++++|++++|+++..  .|.+||+.+++.... ............++++| ++.++++.    ..++.|.+||.. |+.
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            9999999999988765  899999988765311 10010145688999999 56666666    568999999998 998


Q ss_pred             EEEe---cceEEEEEe
Q 023018          271 CCLN---FQYTCVAYD  283 (288)
Q Consensus       271 ~~~~---~~~~~~~~~  283 (288)
                      +..+   .....++|-
T Consensus       305 ~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          305 IDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             EEEEEEEESEEEEEEE
T ss_pred             EEEEEeccCcceEEEe
Confidence            8877   445566554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=2.2e-15  Score=119.67  Aligned_cols=215  Identities=12%  Similarity=-0.000  Sum_probs=149.1

Q ss_pred             CEEEEEEcCCCCcEEE-EEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           66 EVYSVACSPTDATLVA-TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ...++++.+ ++.+++ +.+.++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+|+.........
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678999999 666776 547789999999766543322222334678899999998666555 88999999876544322


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  224 (288)
                      .......+..++++++++++++...++.|.+|+..+.............+..++++|+++.+++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            22233568999999999988887778999999876554333222233467889999999877776678899999987655


Q ss_pred             eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      .......   ....+..++++++|.++++...++.|.+|+..+.......    ..+.+++++++
T Consensus       183 ~~~~~~~---~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          183 QVVLPFT---DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             EEECCCS---SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             eEeeccc---CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCC
Confidence            4332221   2356889999999988777777889999999776544432    34567777654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=5.6e-17  Score=135.87  Aligned_cols=197  Identities=14%  Similarity=0.053  Sum_probs=137.3

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEE-------------------EEEecCCCEEEEE---
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS-------------------LAFSMDGQLLASG---  125 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~---  125 (288)
                      ..+.|+| +++.|+.++.++.|++|++.+++.......+......                   +.|+|+++.++.+   
T Consensus        84 ~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           84 FGGFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TTCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             ccceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            3478999 7778888888889999999988765555434332222                   3456777765544   


Q ss_pred             --eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC-CCCEEEEecCC------CeEEEEECCcccEEEEeecc-CCCeE
Q 023018          126 --GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSED------STVWMWNADRAAYLNMFSGH-GSSVT  195 (288)
Q Consensus       126 --~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~i~  195 (288)
                        ..+..|.+||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+|++..++........ ...+.
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT  241 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred             cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence              35678999999988765554 3556789999999 78877766543      46899998765533322211 23578


Q ss_pred             EEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEEe--------------
Q 023018          196 CGDFTPDGKTICTGSDD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGS--------------  255 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--------------  255 (288)
                      .+.|+|+|++|+.++.+     +.|++||+.+++.......    . ... +.|+| +|++|++++              
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM----P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC----C-SEE-EEEECSSSSEEEEEECCC----------C
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC----C-CCC-CCccCCCCceEEEecCCcceeeccccccc
Confidence            89999999987776543     4499999988865443321    1 123 88999 999888754              


Q ss_pred             --CCCcEEEEEcCCCcEEE
Q 023018          256 --KDGSVHMVNITTGKVCC  272 (288)
Q Consensus       256 --~dg~i~iwd~~t~~~~~  272 (288)
                        .++.|++||+.+++...
T Consensus       316 ~~~~~~i~~~d~~~~~~~~  334 (396)
T 3c5m_A          316 IENDPFLYVLNTKAKSAQK  334 (396)
T ss_dssp             CCCCCEEEEEETTTTBCCE
T ss_pred             cCCCCcEEEEecccCceEE
Confidence              34789999999887543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.73  E-value=2.3e-16  Score=130.67  Aligned_cols=174  Identities=11%  Similarity=0.010  Sum_probs=135.9

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-----------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD-----------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ++..+++++ ...++++|+.++ +++|++...+           ..... .+.. |+.++|  ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            589999999 666788888874 6669976433           11222 3556 999999  88999998 78999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      |+.+.........+..++.++.+.+.  .+++++.||.|.+||+.++....    +...|++++|+|.|  ++.|..||.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence            99887766666667778888887654  38889999999999999877643    34689999999999  788999999


Q ss_pred             EEEEeCCCCce--eEEEcCCC------ccccCeEEEEEcCCCCEEEEE
Q 023018          215 LRVWNPKSGEN--IHVIRGHP------YHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       215 i~i~d~~~~~~--~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      +++|+...+..  ...+...+      .+...|.++.|.+++.+|++-
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999877664  55563211      256789999999999888863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=6.1e-16  Score=126.85  Aligned_cols=195  Identities=11%  Similarity=0.119  Sum_probs=145.6

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..|.+++|++ +...++..+.++.++.|   .++....+..+...+.+++|++++++++++..++.|.+||..+++....
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP   81 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred             cccceeeecC-CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence            4577788888 55666666778889999   3455666666667789999999999878888899999999988876655


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeC------C
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD------D  212 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~------d  212 (288)
                      ...+...+.+++++|+++++++...+    +.|.+||..++.....+.  .....+..++++|+|+++++...      .
T Consensus        82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            44456779999999999988877766    689999998776543332  23457899999999987776653      3


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITT  267 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~t  267 (288)
                      +.|..||..+++......    ....+..++|+|+++.|+ +.+.++.|++|++.+
T Consensus       162 ~~l~~~~~~~~~~~~~~~----~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTPIIQ----NISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEEEECTTSCCEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ceEEEEeCCCCEEEEeec----CCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            567778876554433222    334578899999998665 445678999999964

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=3.6e-15  Score=122.18  Aligned_cols=211  Identities=10%  Similarity=-0.000  Sum_probs=156.2

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      .....+++.  ++.++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||+.+++....
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            346777775  45666677778999999999999988886 345678999999885444443789999999999988777


Q ss_pred             eccCC-----CCEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC------
Q 023018          145 LEGPG-----GGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD------  212 (288)
Q Consensus       145 ~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d------  212 (288)
                      +....     .....+++ ..++.+++.. .++.|.++|+.+++.+..+... .....+.++|+|++++++..+      
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~  198 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPY  198 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCcc
Confidence            66433     13556777 3444444433 4889999999999888777643 345788999999877766554      


Q ss_pred             ----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEE
Q 023018          213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAY  282 (288)
Q Consensus       213 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~  282 (288)
                          +.|.+||..+++....+...  .......++++|+++.|+++..  .|.+||+.+++.....      ..+.++++
T Consensus       199 ~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          199 GYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV  274 (328)
T ss_dssp             CBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred             ccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence                78999999988877666532  1246889999999999888765  8999999998864221      34667777


Q ss_pred             ee
Q 023018          283 DL  284 (288)
Q Consensus       283 ~~  284 (288)
                      +|
T Consensus       275 dp  276 (328)
T 3dsm_A          275 NP  276 (328)
T ss_dssp             CT
T ss_pred             cC
Confidence            66

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=1.5e-14  Score=116.71  Aligned_cols=203  Identities=13%  Similarity=0.119  Sum_probs=147.5

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc----cCcEEEEEEecCCCEEEEE----e--
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASG----G--  126 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~----~--  126 (288)
                      ...+..+...+.+++++| ++.++++...++.|.+|+..+++........    ...+.+++++|+|+++++.    +  
T Consensus        61 ~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~  139 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDK  139 (296)
T ss_dssp             EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHC
T ss_pred             eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccc
Confidence            566667788899999999 7778777777789999999777754433221    2345689999999988773    2  


Q ss_pred             -----------CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC-cccE---EEEeeccC
Q 023018          127 -----------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-RAAY---LNMFSGHG  191 (288)
Q Consensus       127 -----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~  191 (288)
                                 ..+.|..++.. ++ ...+..+......++|+|+++.+++.+.++.|++|++. +++.   ...+..+.
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  217 (296)
T 3e5z_A          140 PEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP  217 (296)
T ss_dssp             GGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred             ccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC
Confidence                       13466666655 44 33444555678999999999988777888999999986 4443   23333345


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI-SADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      ..+..++++++|+++++.  ++.|.+||.. ++.+..+..   +.. +.+++| .|+++.|++++.+ .+..++..+.++
T Consensus       218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~---~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLT---PQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC---SSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC---CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            567789999999866655  7899999986 777777765   334 888999 5888888888765 566667777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=2.5e-15  Score=119.39  Aligned_cols=201  Identities=9%  Similarity=-0.003  Sum_probs=146.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..+.++++.+ ++.++++.. ++.|.+|+................+..+++.++++++++...++.|.+|+..+......
T Consensus        67 ~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            4678899999 566666555 88999999876543322222335678999999998777777788999998665544332


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  224 (288)
                      .......+..++++++++++++...++.|.+|+................+..++++++|..+++...++.|.+|+.....
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            22333457889999999988777778999999987766544333333678999999999777777678899999986543


Q ss_pred             eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      .. .+...  +...+.+++++++|+++++...++.|+++++...+.
T Consensus       225 ~~-~~~~~--~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          225 ST-VLPFT--GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CE-ECCCC--SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ce-eeccC--CCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            32 22211  235689999999999888888899999999876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=1.1e-14  Score=116.20  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=166.6

Q ss_pred             CCCCeeEeecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEecCCCEEEEEeC-CC
Q 023018           53 PDDSTHIFSGHS-DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGL-DG  129 (288)
Q Consensus        53 ~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-dg  129 (288)
                      ..+.+..+..+. ..+.++++.| ++++++  +.++.|+.||. +++.+..+..+ ...+.++.+.++|+++++.+. ++
T Consensus        24 tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           24 TKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             TTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence            566677777776 4789999999 777887  34688999998 78888888764 357889999999999998887 78


Q ss_pred             eEEEEeCCCCceeEEecc------CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          130 LVQIWDPSSGNLKCTLEG------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      .|..++. +++.+..+..      +......+++.++|+++++...++.|..||.. ++.+.++... ..+..+...+++
T Consensus       100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g  176 (276)
T 3no2_A          100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNG  176 (276)
T ss_dssp             EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTS
T ss_pred             EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCC
Confidence            8888885 6777666542      11234566788999999999999999999997 9999888764 345667788999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEEc-CCCcEE
Q 023018          204 KTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKD--------GSVHMVNI-TTGKVC  271 (288)
Q Consensus       204 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~t~~~~  271 (288)
                      +.+++++.++.|..+|..+|+.+..+.....   ....+..+...++|.++++....        +..+++.+ .+|+++
T Consensus       177 ~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~  256 (276)
T 3no2_A          177 DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV  256 (276)
T ss_dssp             CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred             CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEE
Confidence            9999998888999999999999888864211   12237788889999988887421        24466666 688888


Q ss_pred             EEe
Q 023018          272 CLN  274 (288)
Q Consensus       272 ~~~  274 (288)
                      ..+
T Consensus       257 W~~  259 (276)
T 3no2_A          257 WQL  259 (276)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.72  E-value=8e-14  Score=112.54  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=154.2

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      .+..+..-.-+..|+|.++.++++....+.|+.|+..+++. ..+. ....+.+++++++++++++ . ++.|.+||..+
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            34445556678999997778888888889999999987664 2333 4567899999999995544 4 56799999988


Q ss_pred             CceeEEecc----CCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC
Q 023018          139 GNLKCTLEG----PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG  203 (288)
Q Consensus       139 ~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~  203 (288)
                      ++.......    ....+..++++|+|+++++...           .+.|+.++.. ++... +.........++|+|++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTS
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCC
Confidence            765443322    2235789999999997665422           2345555543 33322 22333456899999999


Q ss_pred             CEEEEE-eCCCeEEEEeC--CCCcee--EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----
Q 023018          204 KTICTG-SDDATLRVWNP--KSGENI--HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----  274 (288)
Q Consensus       204 ~~l~~~-~~dg~i~i~d~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----  274 (288)
                      +.|+.+ +..+.|.+|++  .++...  ..+.........+..++++++|++.++....+.|.+||..+|+.+..+    
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            987554 45788999986  455432  222221113356788999999988888777889999999999988776    


Q ss_pred             cceEEEEEe-ec
Q 023018          275 FQYTCVAYD-LD  285 (288)
Q Consensus       275 ~~~~~~~~~-~d  285 (288)
                      ..+.+++|+ |+
T Consensus       241 ~~~t~~~f~g~d  252 (297)
T 3g4e_A          241 DKTTSCCFGGKN  252 (297)
T ss_dssp             SBEEEEEEESGG
T ss_pred             CCceEEEEeCCC
Confidence            357888887 54

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=3.4e-13  Score=108.36  Aligned_cols=217  Identities=12%  Similarity=0.126  Sum_probs=156.1

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      +..+...+.++++.+ ++.++++...++.|.+|+.. ++.... +..+...+.++++.+++.++++...++.|..|+.. 
T Consensus        10 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            344556899999999 66777666667899999988 543322 22345678999999999877777778899999976 


Q ss_pred             CceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 023018          139 GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATL  215 (288)
Q Consensus       139 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~dg~i  215 (288)
                      ++. ..+.  .....+..+++.++++++++...++.|.+||. +++.... .......+..+++.+++..+++...++.|
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            332 2222  24457899999999988888877899999998 5543322 22344578999999999877777677899


Q ss_pred             EEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       216 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      ..||. +++... +... .....+..+++++++.++++...++.|.+|+. +++.....     ..+.+++++++
T Consensus       165 ~~~~~-~g~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          165 GRITE-SGDITE-FKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             EEECT-TCCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             EEEcC-CCcEEE-eeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence            99998 665443 2211 13456889999999998777767889999999 77755432     34556666554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=3.1e-14  Score=124.40  Aligned_cols=195  Identities=9%  Similarity=0.025  Sum_probs=152.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC--CCceeEEeccCCCCEE
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS--SGNLKCTLEGPGGGVE  153 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~  153 (288)
                      +..++++...++.|.++|..+++.+.++.. ...+..+.|+|+++++++++.++.|.+||+.  +++.+..+.... ...
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~  243 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR  243 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence            456777788899999999999999888874 3456789999999999999999999999996  788887777544 478


Q ss_pred             EEEEc----CCCCEEEEecC-CCeEEEEECCcccEEEEeecc-----------CCCeEEEEEcCCCCEE-EEEeCCCeEE
Q 023018          154 WVSWH----PRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGH-----------GSSVTCGDFTPDGKTI-CTGSDDATLR  216 (288)
Q Consensus       154 ~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~p~~~~l-~~~~~dg~i~  216 (288)
                      .++|+    |+|+++++++. +++|.++|..+.+++..+...           ...+..+..++++..+ +.....|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            99999    69998887765 589999999999888776532           1257788889876654 4455679999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++|......+......  .......+.|+|+++++++++ .++.|.++|+.+++++..+
T Consensus       324 ~vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          324 LVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            9998765433222111  334577889999999887665 5789999999999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=2.3e-15  Score=135.49  Aligned_cols=207  Identities=12%  Similarity=0.055  Sum_probs=140.3

Q ss_pred             cCCCCEEEEEEcCCCCcEEE-----EEeCCCeEEEEEccCCeee-EeeccccCcEEEEEEecCCCEEEEEeCCCe-----
Q 023018           62 GHSDEVYSVACSPTDATLVA-----TGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGL-----  130 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----  130 (288)
                      +|...+..++|+| ++++||     .|+.+..|++||+.+++.+ .... .......++|+|+|+.|+.++.+..     
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666799999999 666666     3344568999999998764 2111 1111257899999999999988766     


Q ss_pred             --------EEEEeCCCCce--eEEec--cCCCCEEEEEEcCCCCEEEEecCCC----eEEEEECCcccEEEEeeccCCCe
Q 023018          131 --------VQIWDPSSGNL--KCTLE--GPGGGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAAYLNMFSGHGSSV  194 (288)
Q Consensus       131 --------i~i~d~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i  194 (288)
                              |++|++.++..  ...+.  .+...+..+.|+|+|++|++++.++    .|++|+..++. ...+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    99999988762  22333  3445788999999999888877665    67888765554 33444455556


Q ss_pred             EEEEEcCCCCEEEEEe---CCCeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CC
Q 023018          195 TCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TG  268 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-t~  268 (288)
                      ....+ +++.+++.+.   .++.|.+||+.++..  ...+..+. ....+..++|+ ++.++++...++..++|.+. +|
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            66666 5666444443   257899999987653  23333221 24457788888 67788888889988887665 45


Q ss_pred             cEEEEe
Q 023018          269 KVCCLN  274 (288)
Q Consensus       269 ~~~~~~  274 (288)
                      +....+
T Consensus       352 ~~~~~l  357 (695)
T 2bkl_A          352 KPVRTV  357 (695)
T ss_dssp             CEEEEC
T ss_pred             CeeEEe
Confidence            555544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=1.6e-14  Score=119.90  Aligned_cols=196  Identities=10%  Similarity=0.100  Sum_probs=132.1

Q ss_pred             CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeEEeccC------
Q 023018           85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGP------  148 (288)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~------  148 (288)
                      .|+.|++||..+++.+..+..+..+  .++|+|++++++++.          .++.|.+||+.+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            3689999999999988888766555  899999999998886          2578999999999888777643      


Q ss_pred             CCCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEE------
Q 023018          149 GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTGSDDATLRVW------  218 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~-~~l~~~~~dg~i~i~------  218 (288)
                      ......++++|+|++|+++..  ++.|.+||+.+++.+.. +....  ...+.+.|++ ..+++.+.||.+.+|      
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            234678999999999998864  58999999999988776 44211  1112333432 333444444444444      


Q ss_pred             ------------------------------------------eCCCCce--eEEEcCCC-------ccccCeEEEEEcCC
Q 023018          219 ------------------------------------------NPKSGEN--IHVIRGHP-------YHTEGLTCLTISAD  247 (288)
Q Consensus       219 ------------------------------------------d~~~~~~--~~~~~~~~-------~~~~~v~~~~~~~~  247 (288)
                                                                |+.....  ...+....       ........++++|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence                                                      4332211  01110000       00011112688999


Q ss_pred             CCEEEEEeC-----------CCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          248 STLALSGSK-----------DGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       248 ~~~l~~~~~-----------dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      +..++++..           .+.|.+||+.+++.+..+   . ..+++|+||
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spd  315 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQ  315 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETT
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCC
Confidence            887776543           348999999999999887   4 788888876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=1.7e-12  Score=104.20  Aligned_cols=202  Identities=8%  Similarity=-0.010  Sum_probs=146.8

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +...+.++++.+ ++.++++...++.|..|+.........+......+..+++.+++.++++...++.|.+|+. +++..
T Consensus        55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            456799999998 6777777766789999997632212222224557889999999988777777889999998 55543


Q ss_pred             EE-eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          143 CT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       143 ~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      .. .......+..+++.++++++++...++.|..||. +++.... .......+..+++.+++.++++...++.|.+||.
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            32 2334456899999999988888777899999998 6654432 2234456889999999987776666889999999


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                       ++... .+... .....+.+++++++|+++++...++.|.+|+. +++..
T Consensus       212 -~g~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  258 (299)
T 2z2n_A          212 -SGEIT-EFKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE  258 (299)
T ss_dssp             -TCCEE-EEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred             -CCcEE-EEECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence             66543 33221 13467889999999987776667889999998 55543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=2e-14  Score=118.35  Aligned_cols=184  Identities=9%  Similarity=0.087  Sum_probs=128.1

Q ss_pred             EEEEEEcCCCCcEEEEEeC---------------------------CCeEEEEEccCCeeeEeeccccCcEEEEEEecCC
Q 023018           67 VYSVACSPTDATLVATGGG---------------------------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG  119 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~---------------------------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  119 (288)
                      +..++|+| +++.|+.++.                           ...|++|++.+++.+..+.. . .+..+.|+|++
T Consensus       106 ~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg  182 (347)
T 2gop_A          106 IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK  182 (347)
T ss_dssp             EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE
T ss_pred             ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe
Confidence            99999999 5666655542                           25799999988876455544 3 78899999999


Q ss_pred             CEEEEEeCCC-------eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccEE
Q 023018          120 QLLASGGLDG-------LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYL  184 (288)
Q Consensus       120 ~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~  184 (288)
                       +++++..++       ...||.+.+++. ..+..+ ..+..+  +|+|+.|+.++.+        ..|++||  +++..
T Consensus       183 -~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          183 -IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             -EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             -EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence             777775542       334444434443 333333 445544  9999988877643        4688888  55555


Q ss_pred             EEeeccCCCeEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcE-EE
Q 023018          185 NMFSGHGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV-HM  262 (288)
Q Consensus       185 ~~~~~~~~~i~~-~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~i  262 (288)
                      .....+...+.. +.|+ ++ ++++++.++.+++| +.+++....+.    +...|.+++|+|  .++++++.++.. .+
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~----~~~~v~~~~~s~--~~~~~~~~~~~~~~l  326 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK----GRHWIMGFDVDE--IVVYLKETATRLREL  326 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC----SSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec----CCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence            545556677886 8999 88 88899999999999 87665543333    356788999999  677777777665 77


Q ss_pred             EEcCCCcE
Q 023018          263 VNITTGKV  270 (288)
Q Consensus       263 wd~~t~~~  270 (288)
                      |.+. ++.
T Consensus       327 ~~~~-g~~  333 (347)
T 2gop_A          327 FTWD-GEE  333 (347)
T ss_dssp             EEES-SSE
T ss_pred             eEeC-CcE
Confidence            7776 653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=2.5e-13  Score=114.53  Aligned_cols=204  Identities=14%  Similarity=0.120  Sum_probs=143.4

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCcee
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLK  142 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  142 (288)
                      .....|+|++ ++.++++...++.|++|+..++........... .. ++|+++++.|+++..++  .|.+|+...+...
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            3578999998 677887877789999999988776655544332 33 99999999988888765  7999988766554


Q ss_pred             EEe----ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE----eeccCCC--eEEEEEcCC-CCEEEEEeC
Q 023018          143 CTL----EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM----FSGHGSS--VTCGDFTPD-GKTICTGSD  211 (288)
Q Consensus       143 ~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~--i~~~~~~p~-~~~l~~~~~  211 (288)
                      ..+    ......+.+++++|++..|+++..++.|+.||..++.....    ..+....  ...++|+|+ +.++++-..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            444    22445678899999555555577789999999987653222    1122221  238999995 444555556


Q ss_pred             CCeEEEEeCCCCceeEEEcCCC------------ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEE
Q 023018          212 DATLRVWNPKSGENIHVIRGHP------------YHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~~~~~  273 (288)
                      .+.|+.|+....  ...+.+..            ........++++|+|+++++-. .++.|+.|++.+|+....
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            789999997643  33333211            0123478999999999877777 789999999888876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.66  E-value=1.5e-13  Score=111.43  Aligned_cols=221  Identities=8%  Similarity=0.064  Sum_probs=150.7

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEE-------EeCCCeEEEEEccCCeeeEeec----cccCcEEEEEEecC-CCEEEEEeC
Q 023018           60 FSGHSDEVYSVACSPTDATLVAT-------GGGDDKGFFWRINQGDWASEIQ----GHKDSVSSLAFSMD-GQLLASGGL  127 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~  127 (288)
                      +...-....+++|.+ ++.++++       +..++.|.+|+..+++......    ++...+.+++++++ ++++++. .
T Consensus        13 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~   90 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-M   90 (314)
T ss_dssp             EECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-T
T ss_pred             hhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-C
Confidence            344445678999998 6677777       5778999999988776543222    24567899999999 6544444 4


Q ss_pred             CCeEEEEeCCCCceeEE-ecc----CCCCEEEEEEcCCCCEEEEecCC---------------CeEEEEECCcccEEEEe
Q 023018          128 DGLVQIWDPSSGNLKCT-LEG----PGGGVEWVSWHPRGHIVLAGSED---------------STVWMWNADRAAYLNMF  187 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~  187 (288)
                      .+.|.+|+.. ++.... ...    ....+.+++++++++++++...+               +.|..|+.. ++.....
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            4579999988 665433 221    12357899999999888777654               578888875 5443332


Q ss_pred             eccCCCeEEEEEc----CCCCEEEEE-eCCCeEEEEeCC-CCcee--EEEcCCCccc-cCeEEEEEcCCCCEEEEEeCCC
Q 023018          188 SGHGSSVTCGDFT----PDGKTICTG-SDDATLRVWNPK-SGENI--HVIRGHPYHT-EGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       188 ~~~~~~i~~~~~~----p~~~~l~~~-~~dg~i~i~d~~-~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                       .+......++|+    |+++.|+++ ..++.|.+||+. ++...  ..+.....+. ..+..++++++|+++++...++
T Consensus       169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence             233456889999    999776655 467899999976 44321  1222111122 4578899999999888877889


Q ss_pred             cEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          259 SVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      .|.+|+..+++.+..+    ..+.+++|+++
T Consensus       248 ~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred             EEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence            9999999877765544    34667777664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=5.6e-13  Score=110.88  Aligned_cols=207  Identities=10%  Similarity=-0.041  Sum_probs=137.6

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeeeEeeccc-------cCcEEEEEEecC
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGH-------KDSVSSLAFSMD  118 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~i~~~~~~~~  118 (288)
                      .+..+.....+  .++++| +++.++++.          .++.|.+||..+.+.+..+...       ...-..+.|+|+
T Consensus        59 ~~~~i~~g~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD  135 (373)
T 2mad_H           59 ILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             EEEEecCCCCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence            34455444444  999999 666666664          3678999999988877766422       122357899999


Q ss_pred             CCEEEEEeC--CCeEEEEeCCCCceeEE-eccCCCCEEEEEEcCCC-CEEEEecCCCe----------------------
Q 023018          119 GQLLASGGL--DGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRG-HIVLAGSEDST----------------------  172 (288)
Q Consensus       119 ~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~dg~----------------------  172 (288)
                      |++|+++..  ++.|.++| .+++.+.. +.....    +.+.|.+ +.+++.+.||.                      
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~  210 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccC
Confidence            999998874  57899999 99988777 543221    1222221 22233333344                      


Q ss_pred             -------------------------EEEEECCccc--EEEEeec----------cCCCeEEEEEcCCCCEEEEEeC----
Q 023018          173 -------------------------VWMWNADRAA--YLNMFSG----------HGSSVTCGDFTPDGKTICTGSD----  211 (288)
Q Consensus       173 -------------------------i~i~d~~~~~--~~~~~~~----------~~~~i~~~~~~p~~~~l~~~~~----  211 (288)
                                               +.+.|+....  .+..+..          .......+.++|++++|+++..    
T Consensus       211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~  290 (373)
T 2mad_H          211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence                                     4444443221  1111110          0112334778999888887653    


Q ss_pred             ------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEe
Q 023018          212 ------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       212 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t~~~~~~~  274 (288)
                            .+.|.++|+.+++.+..+..    ......+.|+|||+ +|+++. .++.|.+||+.+++.++.+
T Consensus       291 ~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          291 WKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence                  35799999999998888863    34678999999999 777776 4899999999999999884

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.65  E-value=2.8e-12  Score=104.84  Aligned_cols=218  Identities=17%  Similarity=0.062  Sum_probs=148.6

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      +.....-..+.+|+|.++.++++...++.|..|+..+++.. .+. ....+.+++|+++++++++. .+ .|.+||..++
T Consensus        44 ~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g  119 (326)
T 2ghs_A           44 DETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATG  119 (326)
T ss_dssp             ECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC
T ss_pred             eccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC
Confidence            33333456788999966778888888899999999877643 233 34678999999999876654 44 4999999888


Q ss_pred             ceeEEecc----CCCCEEEEEEcCCCCEEEEecC------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          140 NLKCTLEG----PGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       140 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +.......    ....+..++++|+|+++++...      .+.|+.++  +++.. .+.........++|+|+++.|+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEE
Confidence            75433321    1235889999999987665532      25677776  44433 232233456889999999987665


Q ss_pred             e-CCCeEEEEeCC--CC-ce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEE
Q 023018          210 S-DDATLRVWNPK--SG-EN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTC  279 (288)
Q Consensus       210 ~-~dg~i~i~d~~--~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~  279 (288)
                      . .++.|.+|++.  ++ ..  ...+.........+..++++++|.+.++...++.|.+|+. +++.+..+    ..+.+
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~  275 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC  275 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence            4 56899999985  55 32  1222111112345678999999988777766789999998 67776655    24678


Q ss_pred             EEEe-ec
Q 023018          280 VAYD-LD  285 (288)
Q Consensus       280 ~~~~-~d  285 (288)
                      ++|+ ++
T Consensus       276 ~af~g~d  282 (326)
T 2ghs_A          276 PAFIGPD  282 (326)
T ss_dssp             EEEESTT
T ss_pred             EEEecCC
Confidence            8887 54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=5.9e-14  Score=126.70  Aligned_cols=198  Identities=9%  Similarity=0.011  Sum_probs=141.4

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCe----------------EEEEEccCCee----eEeeccccCcEEEEEEecCCCEEEEEe
Q 023018           67 VYSVACSPTDATLVATGGGDDK----------------GFFWRINQGDW----ASEIQGHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~----------------i~iw~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      +..++|+| +++.|+.++.++.                |++|++.+++.    +.....|...+..+.|+|+|++|+.++
T Consensus       173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            56799999 6677777766655                99999987652    222233455678999999999988776


Q ss_pred             C-----CCeEEEEeCCC------Cc-eeEEeccCCCCEEEEEEcCCCCEEEEecCC----CeEEEEECCccc--EEEEee
Q 023018          127 L-----DGLVQIWDPSS------GN-LKCTLEGPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAA--YLNMFS  188 (288)
Q Consensus       127 ~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~--~~~~~~  188 (288)
                      .     +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+|++.++.  ....+.
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            4     56899999976      43 34555555555554 478888877766543    469999998764  123444


Q ss_pred             ccCC--CeEEEEEcCCCCEEEEEeCCCe--EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE-e---CCCcE
Q 023018          189 GHGS--SVTCGDFTPDGKTICTGSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-S---KDGSV  260 (288)
Q Consensus       189 ~~~~--~i~~~~~~p~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i  260 (288)
                      .+..  .+..+.|++++.++++...++.  |.+|++.+++.+..+..   +...+..+.++|++..|+.. +   ..+.|
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            4433  6788999977777888888884  66778877877677765   45668889999988766533 2   35789


Q ss_pred             EEEEcCCCc
Q 023018          261 HMVNITTGK  269 (288)
Q Consensus       261 ~iwd~~t~~  269 (288)
                      +.||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999999887

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=7.5e-14  Score=126.58  Aligned_cols=205  Identities=14%  Similarity=0.044  Sum_probs=136.2

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeC-CC----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe-------
Q 023018           63 HSDEVYSVACSPTDATLVATGGG-DD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL-------  130 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-------  130 (288)
                      |...+..++|+| ++++||.+.. .|    .|++||+.+++.+.... +...+..++|+|+ +.|+.++.++.       
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            444788999999 6666655543 23    59999999988755321 2222357899999 98888876554       


Q ss_pred             -------EEEEeCCCCce--eEEecc--CCCCEEEEEEcCCCCEEEEecCCC-----eEEEEECCcc--cEEEEeeccCC
Q 023018          131 -------VQIWDPSSGNL--KCTLEG--PGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA--AYLNMFSGHGS  192 (288)
Q Consensus       131 -------i~i~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~  192 (288)
                             |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  +....+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   89999987752  233333  223588999999999888877543     8999999776  31444544444


Q ss_pred             CeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-
Q 023018          193 SVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-  266 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-  266 (288)
                      .+... ++|+++.|+..+.+    +.|.+||+.++. ....+...  +...+..+.|+ ++.++++...++..++|.+. 
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE--SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC--CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence            45444 34889988887753    459999998742 33333322  33446677777 56777888888877776554 


Q ss_pred             CCcEEEEe
Q 023018          267 TGKVCCLN  274 (288)
Q Consensus       267 t~~~~~~~  274 (288)
                      +|+....+
T Consensus       394 ~g~~~~~l  401 (741)
T 1yr2_A          394 DGKPAGAV  401 (741)
T ss_dssp             TSCEEEEC
T ss_pred             CCCceeec
Confidence            45555544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.63  E-value=4e-13  Score=108.85  Aligned_cols=222  Identities=13%  Similarity=0.062  Sum_probs=150.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+..+..+.......+|+|++..+++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence            34455666666778899999955558888888899999987 444 3445445667899999999986666556688999


Q ss_pred             EeCCCCceeEEecc----CCCCEEEEEEcCCCCEEEE----ecC-------------CCeEEEEECCcccEEEEeeccCC
Q 023018          134 WDPSSGNLKCTLEG----PGGGVEWVSWHPRGHIVLA----GSE-------------DSTVWMWNADRAAYLNMFSGHGS  192 (288)
Q Consensus       134 ~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~  192 (288)
                      |+.. ++.......    ....+..++++|+|+++++    |..             .+.|+.||..+++.....  ...
T Consensus       112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            9976 553322211    1234678999999998886    432             356888888666543332  334


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          193 SVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      ....++|+|+++.|+++...      +.|.+|++..+..  ...+...  ....+..++++++|++.+ ++.+ .|.+|+
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~  264 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWS-SSGT-GVCVFD  264 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence            56889999999988887765      6899999875431  1122111  223455788999998544 4444 599999


Q ss_pred             cCCCcEEEEe---cceEEEEEeec
Q 023018          265 ITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       265 ~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      . +|+.+..+   ....+++|+++
T Consensus       265 ~-~g~~~~~~~~~~~~~~~~f~~d  287 (305)
T 3dr2_A          265 S-DGQLLGHIPTPGTASNCTFDQA  287 (305)
T ss_dssp             T-TSCEEEEEECSSCCCEEEECTT
T ss_pred             C-CCCEEEEEECCCceeEEEEeCC
Confidence            8 56766655   34566777644

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=6.8e-14  Score=117.39  Aligned_cols=193  Identities=17%  Similarity=0.139  Sum_probs=144.1

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeEEeccC-------C
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCTLEGP-------G  149 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~-------~  149 (288)
                      +.|.++|..+.+.+.++..-..+  .+.++|++++++++.          .++.|.++|..+++.+..+...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            69999999999999998855556  799999999888775          3678999999999988877532       1


Q ss_pred             CCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEEeeccC----------------------------CC------
Q 023018          150 GGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHG----------------------------SS------  193 (288)
Q Consensus       150 ~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~----------------------------~~------  193 (288)
                      .....+.++|+|++++++..  ++.|.+.|+.+++.+..+....                            ..      
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            23567899999999998864  5789999998876554432100                            00      


Q ss_pred             ----------------------------------------------------------------eEEEEEcCCCCEEEEE
Q 023018          194 ----------------------------------------------------------------VTCGDFTPDGKTICTG  209 (288)
Q Consensus       194 ----------------------------------------------------------------i~~~~~~p~~~~l~~~  209 (288)
                                                                                      ...++++|+++++++.
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence                                                                            0014566666766665


Q ss_pred             eC----------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCcEEEEe---
Q 023018          210 SD----------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTGKVCCLN---  274 (288)
Q Consensus       210 ~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t~~~~~~~---  274 (288)
                      ..          .+.|.++|+.+.+.+..+..    ......+.|+|+++ +|++.. .++.|.++|+.+++.++.+   
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~v  412 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQL  412 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             ecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCC
Confidence            42          34688888888888887763    34578899999998 888887 5899999999999999886   


Q ss_pred             cceEEEEEeec
Q 023018          275 FQYTCVAYDLD  285 (288)
Q Consensus       275 ~~~~~~~~~~d  285 (288)
                      .....+.+++|
T Consensus       413 G~~P~~i~~~~  423 (426)
T 3c75_H          413 GRGPQIITTHD  423 (426)
T ss_dssp             SSSCCEEECCC
T ss_pred             CCCCcEEEcCC
Confidence            23344555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=6.7e-12  Score=109.68  Aligned_cols=216  Identities=13%  Similarity=0.039  Sum_probs=154.8

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeeeEeeccccCcEEEEEEe----cCCCEEEEEe-C
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--QGDWASEIQGHKDSVSSLAFS----MDGQLLASGG-L  127 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~-~  127 (288)
                      +.+..+.. ...+..++|+| +++++++++.++.|.+||+.  +.+.+..+.... ....++|+    |+|+++++++ .
T Consensus       188 ~v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          188 EIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             CEEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             eEEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEcc
Confidence            44444443 23577999999 77888888999999999996  777777776433 45789999    6999888776 4


Q ss_pred             CCeEEEEeCCCCceeEEeccC-----------CCCEEEEEEcCCCCE-EEEecCCCeEEEEECCcccEEEEee-ccCCCe
Q 023018          128 DGLVQIWDPSSGNLKCTLEGP-----------GGGVEWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFS-GHGSSV  194 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i  194 (288)
                      ++.|.++|..+.+.+..+...           ...+..+..++++.. ++.....|.|.++|....+.+.... ......
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~  344 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL  344 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccc
Confidence            699999999999888776532           225788888887664 4455567999999987754322211 234567


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEEcC-C-CccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCC--
Q 023018          195 TCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRG-H-PYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITT--  267 (288)
Q Consensus       195 ~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t--  267 (288)
                      ..+.|+|++++|+++. .++.|.++|+.+++....+.. . ..|...-..+ ++|++. +.+++. .++.|.+++..+  
T Consensus       345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence            8899999999987765 578999999999988777654 2 2233222222 578744 444543 468999999998  


Q ss_pred             -----CcEEEEe
Q 023018          268 -----GKVCCLN  274 (288)
Q Consensus       268 -----~~~~~~~  274 (288)
                           .+.+.++
T Consensus       424 ~~~~~~kvv~~i  435 (567)
T 1qks_A          424 HPDNAWKILDSF  435 (567)
T ss_dssp             CTTTBTSEEEEE
T ss_pred             CccccCEEEEEE
Confidence                 5677766

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.4e-11  Score=98.87  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=153.9

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE-eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      .....+.++++.+ ++.++++...++.|.+|+.. ++... .+......+.++++.+++.++++...++.|..||.. ++
T Consensus        17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3456789999999 67777777678999999987 54433 222334678899999999877776668899999987 55


Q ss_pred             eeE-EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          141 LKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       141 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      ... .+......+..+++.++++++++...++.|..|+.. ++... .+......+..+++.++++.+++...++.|..|
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            432 222234578999999999888887778899999987 55432 222234678999999999966666667899999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      |. +++... +... .....+..+++++++.++++....+.|.+|+. +++.....     ..+.+++++++
T Consensus       173 ~~-~g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          173 TN-TGKLEE-YPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             CT-TCCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             CC-CCcEEE-eeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence            98 555443 3221 13456889999999988777766788999998 66655442     23556666543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.4e-12  Score=105.77  Aligned_cols=198  Identities=12%  Similarity=0.172  Sum_probs=138.7

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-ecc----ccCcEEEEEEecCCCEEEEEeCC---------
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQG----HKDSVSSLAFSMDGQLLASGGLD---------  128 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------  128 (288)
                      +...+.+++++++++.++++.. .+.|.+|+.. ++.... ...    ....+.++++.++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4467899999993266555544 3479999988 655433 221    12347899999999877776554         


Q ss_pred             ------CeEEEEeCCCCceeEEeccCCCCEEEEEEc----CCCCEEEEe-cCCCeEEEEECC-ccc-----EEEEeeccC
Q 023018          129 ------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWH----PRGHIVLAG-SEDSTVWMWNAD-RAA-----YLNMFSGHG  191 (288)
Q Consensus       129 ------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~  191 (288)
                            +.|..|+.. ++..... .+......++|+    |+++.++++ ..++.|.+|++. +++     ....+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  577788765 5443332 233457889999    998755544 567999999976 333     222233333


Q ss_pred             -CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 023018          192 -SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMVNITT  267 (288)
Q Consensus       192 -~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~t  267 (288)
                       ..+..++++++|+++++...++.|.+||..+++....+..   +...+.+++++|+++.|+ +...++.|..|++..
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             5678899999998888877889999999987776666654   346789999999998554 445568999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=3.2e-14  Score=117.86  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-----------eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  177 (288)
                      +++.+++++...++++|+.++ +.+|++...+           ...... ..+ |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999999999999875 6669864332           112233 445 999999  88999999 789999999


Q ss_pred             CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC
Q 023018          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD  257 (288)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  257 (288)
                      +++.........+..++..+.+.+.  .+++++.||.|.+||+.++....       +...|++++|+|+|  ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcC
Confidence            9887666666677888888887764  38888999999999999877543       34579999999999  6788999


Q ss_pred             CcEEEEEcCCCcE--EEEe
Q 023018          258 GSVHMVNITTGKV--CCLN  274 (288)
Q Consensus       258 g~i~iwd~~t~~~--~~~~  274 (288)
                      |.+++|+..++++  .+.+
T Consensus       182 g~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEcCCCcccccccee
Confidence            9999999988775  4444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=1.6e-11  Score=98.64  Aligned_cols=202  Identities=8%  Similarity=0.038  Sum_probs=145.2

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE-eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      +...+.++++.+ ++.++++...++.|..|+.. ++... .+......+.++++.+++.++++...++.|..++.. ++.
T Consensus        60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            346789999998 66777776667889999987 54432 222234678999999999877777768899999987 554


Q ss_pred             eEE-eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 023018          142 KCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN  219 (288)
Q Consensus       142 ~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d  219 (288)
                      ... +......+..+++.++++++++...++.|..|+. +++.... .......+..+++.+++..+++....+.|.+|+
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            422 3334557899999999997777777889999998 5554332 223345688999999988777666677899999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      . ++..... ... .....+.+++++++|.++++...++.|..|+. +++...
T Consensus       216 ~-~g~~~~~-~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~  264 (300)
T 2qc5_A          216 T-TGEISEY-DIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQE  264 (300)
T ss_dssp             T-TCCEEEE-ECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEE
T ss_pred             C-CCcEEEE-ECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEE
Confidence            8 4544332 211 13456889999999987777666789999998 565443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=9.2e-12  Score=103.56  Aligned_cols=202  Identities=13%  Similarity=0.051  Sum_probs=133.7

Q ss_pred             CCcEEEEEeC--CC---eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCc
Q 023018           76 DATLVATGGG--DD---KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGN  140 (288)
Q Consensus        76 ~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~  140 (288)
                      ++..+++...  ..   .|.+||..+++.+..+.....+  .++++|++++++++.          .++.|.+||..+.+
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            4555555542  22   8899999999988888754444  899999999988875          36789999999988


Q ss_pred             eeEEeccC-------CCCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEE-eeccCCCeEEEEEcCCC-CEEEEE
Q 023018          141 LKCTLEGP-------GGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDG-KTICTG  209 (288)
Q Consensus       141 ~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~p~~-~~l~~~  209 (288)
                      .+..+...       ......+.|+|+|++|+++..  ++.|.++| .+++.+.. +.... .   +.+.|.+ +.+++.
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~---~~~~~~~~~~~~~~  183 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-C---YHIHPGAPSTFYLL  183 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-e---EEEEeCCCceEEEE
Confidence            87776543       123568999999999998874  57899999 99988777 54221 1   2223322 223333


Q ss_pred             eCCCeEEEEeCCCCcee--------------------------------------------------EEEcCC-------
Q 023018          210 SDDATLRVWNPKSGENI--------------------------------------------------HVIRGH-------  232 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~--------------------------------------------------~~~~~~-------  232 (288)
                      +.||.+.++|. +++..                                                  ..+...       
T Consensus       184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            34444444444 33222                                                  111000       


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          233 PYHTEGLTCLTISADSTLALSGSK----------DGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      .........+.++|++..|+++..          .+.|.++|+.+++.+..+   ....+++|++|
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~D  328 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD  328 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCC
Confidence            000122334678888888777643          357999999999998887   34778888876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.56  E-value=6.1e-16  Score=128.78  Aligned_cols=187  Identities=13%  Similarity=0.093  Sum_probs=110.9

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC-EE-
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VE-  153 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~-  153 (288)
                      .+..+++++.||.|+.||..+++.+..+..  ..+.+..+..++..+++++.||.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            345788899999999999999998888875  45555555667777888889999999999988876665432110 00 


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Q 023018          154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP  233 (288)
Q Consensus       154 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  233 (288)
                      +..+. .+..+++++.++.|+.||.++++.+..+..+.    ...++|++..+++++.++.|+.||.++|+.+..+....
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            00111 34577888889999999999999887776543    23456788899999999999999999998766554211


Q ss_pred             ccccCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          234 YHTEGLTCLTISADS---TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       234 ~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                           .....+.++.   ..+++++.+|.|+.||..+|+.+...
T Consensus       161 -----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          161 -----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             -----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             -----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence                 1122233321   45677889999999999999988765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.55  E-value=9.5e-12  Score=100.32  Aligned_cols=186  Identities=12%  Similarity=0.044  Sum_probs=127.5

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc----ccCcEEEEEEecCCCEEEEEeC-----------
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGL-----------  127 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------  127 (288)
                      +...+.+++++| ++.++++ . ++.|.+|+..+++.......    ....+++++++|+|+++++...           
T Consensus        52 ~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           52 MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            346799999999 5665544 3 46799999988765433221    1234789999999996665432           


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEEC--CcccE-----EEEeeccCCCeEEEEE
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNA--DRAAY-----LNMFSGHGSSVTCGDF  199 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~  199 (288)
                      .+.|..++.. ++... +.........++|+|+++.|+ +.+.++.|.+|++  .++..     ...+......+..+++
T Consensus       129 ~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          129 QGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             CEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             CcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            2344444432 33332 333334578999999998664 5566789999987  44432     2223333456789999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEEeC
Q 023018          200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK  256 (288)
Q Consensus       200 ~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  256 (288)
                      .++|++.++....+.|.+||..+++.+..+..   +...+++++|. |+++.|++.+.
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCCCCCEEEEEcC
Confidence            99998888777788999999998988888775   34678999998 88777665543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=3.8e-13  Score=121.12  Aligned_cols=198  Identities=15%  Similarity=0.058  Sum_probs=134.7

Q ss_pred             EEEEEcCCCCcEEEEEeCCCe-------------EEEEEccCCe----eeEeeccccCcEEEEEEecCCCEEEEEeCCC-
Q 023018           68 YSVACSPTDATLVATGGGDDK-------------GFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASGGLDG-  129 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~-------------i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-  129 (288)
                      ..++|+| +++.|+.++.+..             |++|++.+++    .+.....+...+..+.|+|+|++|+.++.++ 
T Consensus       171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred             cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence            6789999 6777777777665             9999998865    3333334556788999999999988877665 


Q ss_pred             ---eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec---CCCeEEEEECCcccE---EEEeecc-CCCeEEEEE
Q 023018          130 ---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAY---LNMFSGH-GSSVTCGDF  199 (288)
Q Consensus       130 ---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~-~~~i~~~~~  199 (288)
                         .|.+|+..+++.. .+..+...+....| +++.+++.+.   .++.|.+||+.++..   ...+..+ ...+..++|
T Consensus       250 ~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             TEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred             CceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence               7778876655543 34444445666666 4555444443   257899999987652   2333222 446788888


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe----CCCcEEEEEcCCCcEE
Q 023018          200 TPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS----KDGSVHMVNITTGKVC  271 (288)
Q Consensus       200 ~p~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~t~~~~  271 (288)
                      + ++.++++...++..++|.+. ++.....+..+  ....+..+.++|++..|+...    ..+.|++||+.+++..
T Consensus       328 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          328 V-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP--GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             E-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS--SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             E-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            8 66778888889987777543 35555555432  245567788899887666332    3478999999998753

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=5.2e-12  Score=104.02  Aligned_cols=215  Identities=9%  Similarity=0.030  Sum_probs=143.9

Q ss_pred             CCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeeeEeec-------cccCcEEEEEEecCCCEEEEEeC-----CCe
Q 023018           65 DEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQ-------GHKDSVSSLAFSMDGQLLASGGL-----DGL  130 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~-----dg~  130 (288)
                      .....++++| +++++++..  .++.++||.+.+++. ..+.       .+-..+..++++++++++++-..     ++.
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            6789999999 677877753  234356666655543 2221       24467899999999876555433     578


Q ss_pred             EEEEeCCCCceeEEeccC------CCCEEEEEEcCCCCE-EEEec---CCCeEEEEECCcccEEEEeecc----------
Q 023018          131 VQIWDPSSGNLKCTLEGP------GGGVEWVSWHPRGHI-VLAGS---EDSTVWMWNADRAAYLNMFSGH----------  190 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~-l~~~~---~dg~i~i~d~~~~~~~~~~~~~----------  190 (288)
                      |.+||+.+++.+..+..+      ...+..+++++++.. +++-.   .++.|.+||+.+++..+.+..|          
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            999999999877666432      235688999986444 45544   5789999999887765544321          


Q ss_pred             -------------------CCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCC---CCc--------eeEEEcCCCccccCe
Q 023018          191 -------------------GSSVTCGDFTPDGKTICTGSDDA-TLRVWNPK---SGE--------NIHVIRGHPYHTEGL  239 (288)
Q Consensus       191 -------------------~~~i~~~~~~p~~~~l~~~~~dg-~i~i~d~~---~~~--------~~~~~~~~~~~~~~v  239 (288)
                                         ...+..|+|+|+++.|+++...+ .|..++..   .+.        .+..+.    +....
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~p  250 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS----EKPIC  250 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSC
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc----cCCCC
Confidence                               12368899999999998887766 55555431   111        011111    22345


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----cceEEEEEeec
Q 023018          240 TCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----FQYTCVAYDLD  285 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----~~~~~~~~~~d  285 (288)
                      ..++++++|.++++...++.|.+||..+|+.....     ....+++|+++
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            67899999999999888999999998667654332     23567777654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.52  E-value=2.2e-12  Score=106.47  Aligned_cols=199  Identities=10%  Similarity=-0.038  Sum_probs=142.6

Q ss_pred             EEEEEeCCC----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeEE
Q 023018           79 LVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        79 ~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~  144 (288)
                      .+++...++    +|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+..
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            444444444    8889999999999998865566  699999999888876          368999999999999988


Q ss_pred             eccC-------CCCEEEEEEcCCCCEEEEecC--CCeEEE--EECCcccEEE---------------------------E
Q 023018          145 LEGP-------GGGVEWVSWHPRGHIVLAGSE--DSTVWM--WNADRAAYLN---------------------------M  186 (288)
Q Consensus       145 ~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~---------------------------~  186 (288)
                      +..+       ......++++|+|++++++..  ...+.+  +|+.+-..+.                           .
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEE
Confidence            8643       123567999999999888864  356777  7774300000                           0


Q ss_pred             e--------------------------------------------eccCC-----------------------CeEEEEE
Q 023018          187 F--------------------------------------------SGHGS-----------------------SVTCGDF  199 (288)
Q Consensus       187 ~--------------------------------------------~~~~~-----------------------~i~~~~~  199 (288)
                      +                                            .....                       ....+.+
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             CccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence            0                                            00000                       0011678


Q ss_pred             cCCCCEEEEEeC---------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCC
Q 023018          200 TPDGKTICTGSD---------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS-KDGSVHMVNITTG  268 (288)
Q Consensus       200 ~p~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~t~  268 (288)
                      +|++++++++..         ++.+.++|+.+++.+..+..    ......+.|+|+|+ ++++.. .++.|.++|+.++
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            999998887643         23566999999988887763    33588999999997 556666 5899999999999


Q ss_pred             cEEEEe---cceEEEEEe
Q 023018          269 KVCCLN---FQYTCVAYD  283 (288)
Q Consensus       269 ~~~~~~---~~~~~~~~~  283 (288)
                      +.+..+   ....++++.
T Consensus       348 kvv~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          348 QDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EEEEECCCCSCCCEEECC
T ss_pred             cEEEEEECCCCCCEEEee
Confidence            999988   344555543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=5.9e-12  Score=103.98  Aligned_cols=210  Identities=11%  Similarity=0.053  Sum_probs=145.1

Q ss_pred             EEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeE
Q 023018           67 VYSVACSPTDATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKC  143 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~  143 (288)
                      -..++|+| ++++++++..  ++.|.++|+.+++.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++...
T Consensus       139 P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence            34589999 6666666543  689999999999999888632 2 1 233433455777888899999999876 55432


Q ss_pred             EeccC----CCCEE-EEEEc-CCCCEEEEecCCCeEEEEECCccc--EEEEeec----------cCCCeEEEEEcCCCCE
Q 023018          144 TLEGP----GGGVE-WVSWH-PRGHIVLAGSEDSTVWMWNADRAA--YLNMFSG----------HGSSVTCGDFTPDGKT  205 (288)
Q Consensus       144 ~~~~~----~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~----------~~~~i~~~~~~p~~~~  205 (288)
                      .....    ..++. ...|. ++|++++ .+.+|.|++.|+.+..  .+..+..          .......++++|++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~  293 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  293 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence            21111    12222 23554 5665555 5557999999997653  3333320          1123335777999999


Q ss_pred             EEEEeC----------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCcEEEE
Q 023018          206 ICTGSD----------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSG-SKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       206 l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~t~~~~~~  273 (288)
                      +++...          .+.|.++|+.+++.+..+..    ...+.+|.++++++ +|++. ..++.|.++|..+++.++.
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            888653          25799999999999998873    45688999999986 66665 4589999999999999998


Q ss_pred             e---cceEEEEEeec
Q 023018          274 N---FQYTCVAYDLD  285 (288)
Q Consensus       274 ~---~~~~~~~~~~d  285 (288)
                      +   .....+.+++|
T Consensus       370 i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          370 VNQLGHGPQVITTAD  384 (386)
T ss_dssp             ECCCCSSCCEEEECC
T ss_pred             ecCCCCCceeEECCc
Confidence            8   45667888877

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.51  E-value=2.6e-12  Score=115.56  Aligned_cols=201  Identities=9%  Similarity=0.035  Sum_probs=132.7

Q ss_pred             cCCCCEEEEEEcCCCCcEEE-EEeC----CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-------
Q 023018           62 GHSDEVYSVACSPTDATLVA-TGGG----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-------  129 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~-~~~~----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------  129 (288)
                      +|...+..++|+| ++++|| +.+.    ...|++||+.+++.+.... +......++|+ |++.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            3556789999999 565555 3332    3579999999988654321 11113567899 999998887764       


Q ss_pred             ------eEEEEeCCCCce--eEEecc---CCCCEEEEEEcCCCCEEEEecC----CCeEEEEECCccc-EEEEeeccCCC
Q 023018          130 ------LVQIWDPSSGNL--KCTLEG---PGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAA-YLNMFSGHGSS  193 (288)
Q Consensus       130 ------~i~i~d~~~~~~--~~~~~~---~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~  193 (288)
                            .|++|++.++..  ...+..   +......+.|+|+|++|+....    ...|+++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                  399999987653  233332   3345788999999998765432    3589999997763 34455555555


Q ss_pred             eEEEEEcCCCCEEEEEe-CC---CeEEEEeCCCCce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CC--cEEEEE
Q 023018          194 VTCGDFTPDGKTICTGS-DD---ATLRVWNPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVN  264 (288)
Q Consensus       194 i~~~~~~p~~~~l~~~~-~d---g~i~i~d~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd  264 (288)
                      .... |++++..|+..+ .+   +.|..+|+.++..  ...+..   +...+.  .|+++++.|+.... +|  .|++|+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            5554 667666665544 33   5799999987654  334443   333343  88888887776654 43  789999


Q ss_pred             cCCCcEE
Q 023018          265 ITTGKVC  271 (288)
Q Consensus       265 ~~t~~~~  271 (288)
                      +.++...
T Consensus       357 ~~g~~~~  363 (693)
T 3iuj_A          357 YEGKRVR  363 (693)
T ss_dssp             TTSCEEE
T ss_pred             CCCCeeE
Confidence            8865443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.50  E-value=4e-10  Score=89.27  Aligned_cols=215  Identities=11%  Similarity=0.014  Sum_probs=142.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  143 (288)
                      ..+.+++|++.++.++++-...+.|..+++........+.........+++++++..|+.+ ...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4578999999666777777778899999987655433333222466899999976655554 456899999987543333


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEee-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGS-DDATLRVW  218 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~  218 (288)
                      ...........++++|++..|+.+..   .+.|..+++.... ...+. ..-.....++++|++..|+.+. ..+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            33333356889999996555554443   4688888875432 22222 2234678999999887776655 46789999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-----ceEEEEEeec
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF-----QYTCVAYDLD  285 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~-----~~~~~~~~~d  285 (288)
                      |+........+..    ......++.. .+.++++....+.|.++|..+++.+..+.     ...++++.|+
T Consensus       195 ~~~g~~~~~~~~~----~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          195 NPAQPGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             ETTEEEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             ecCCCceEEEecC----CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            9875443333332    2234566654 34444454456899999999999988872     3567887776

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.50  E-value=3.4e-11  Score=101.45  Aligned_cols=192  Identities=11%  Similarity=0.104  Sum_probs=132.1

Q ss_pred             EEEcCCCCcEEEEEeCCC--eEEEEEccCCeeeEee----ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           70 VACSPTDATLVATGGGDD--KGFFWRINQGDWASEI----QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ++|+| ++..|+++..++  .|.+|+...+.....+    ......+.+++++|++..|+++..++.|+.|+..++....
T Consensus       176 ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          176 PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred             eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence            88888 556666666655  7888888765443333    2134566889999955556667778999999998775433


Q ss_pred             E----eccCCCCE--EEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccC---------------CCeEEEEEcC
Q 023018          144 T----LEGPGGGV--EWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHG---------------SSVTCGDFTP  201 (288)
Q Consensus       144 ~----~~~~~~~i--~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~~p  201 (288)
                      .    ..+....-  ..++|+|+ +.++++-..++.|+.|+....  +..+.++.               .....++++|
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence            2    22222212  38999994 666666677899999987543  22332221               3478999999


Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCCceeEEEcCCC------------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          202 DGKTICTGS-DDATLRVWNPKSGENIHVIRGHP------------YHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       202 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      +|+++++-. .++.|+.|++.++.. ..+.+..            ........+++++++.++++-..+++|+.+++
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999777766 788999999877764 3333320            01245889999999888888888888988875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=3.1e-12  Score=116.02  Aligned_cols=197  Identities=11%  Similarity=0.017  Sum_probs=130.7

Q ss_pred             EEEEEcCCCCcEEEEEeCCC--------------eEEEEEccCCee--eEeec--cccCcEEEEEEecCCCEEEEEeCCC
Q 023018           68 YSVACSPTDATLVATGGGDD--------------KGFFWRINQGDW--ASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG  129 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg--------------~i~iw~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg  129 (288)
                      ..++|+| + +.|+.++.++              .|++|++.++..  ...+.  .+...+..+.|+|+|++|+..+.++
T Consensus       212 ~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          212 SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            5788999 5 6666665544              388999877652  22232  2334588999999999888777543


Q ss_pred             -----eEEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecC----CCeEEEEECCcc--cEEEEeeccCCCeEE
Q 023018          130 -----LVQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRA--AYLNMFSGHGSSVTC  196 (288)
Q Consensus       130 -----~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~i~~  196 (288)
                           .|++||+.++  +....+..+........ +|+++.|+..+.    ++.|.+|++.++  .....+..+...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999877  41344444444455543 478888877765    356999999874  333334444455667


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEEcCCCccccCeEEEEEcCCCCEEEE-Ee---CCCcEEEEEcCCCcE
Q 023018          197 GDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALS-GS---KDGSVHMVNITTGKV  270 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~t~~~  270 (288)
                      +.|+ .+.++++...++..+||.+. ++.....+...  ....+..+.++|++..|+. .+   ..+.|++||+.+++.
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP--GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS--SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC--CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7777 55667788888876666443 35555555431  2456788999998875553 22   347899999998874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=1.8e-10  Score=94.11  Aligned_cols=183  Identities=12%  Similarity=0.056  Sum_probs=124.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc----ccCcEEEEEEecCCCEEEEEeC------CCeEEE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGL------DGLVQI  133 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~i  133 (288)
                      ...+.+++|.| ++.++++. . ..|.+|+..+++.......    ....+.+++++|+|+++++...      .+.|..
T Consensus        89 ~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           89 PFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             SSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            45799999999 66666554 4 4599999887765433221    1235789999999986665432      245666


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEECC--cc-c-----EEEEeeccCCCeEEEEEcCCCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNAD--RA-A-----YLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~-----~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      ++  +++... +.........++|+|+++.++.+ +.++.|.+|++.  ++ .     ....+......+..+++.++|.
T Consensus       166 ~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~  242 (326)
T 2ghs_A          166 VA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  242 (326)
T ss_dssp             EE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             Ee--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence            66  454332 32233457889999999866554 557899999985  55 2     1222222345678899999998


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEEEeC
Q 023018          205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSK  256 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  256 (288)
                      +.++...++.|.+||. +++.+..+..   ....+.+++|+ |++..|++++.
T Consensus       243 lwva~~~~~~v~~~d~-~g~~~~~i~~---~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          243 IWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCEEEEECC-CCCEEEEEEC---CCCCcEEEEEecCCCCEEEEEec
Confidence            7777767789999998 5776666654   34568999998 88776655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=4.2e-11  Score=96.89  Aligned_cols=196  Identities=12%  Similarity=0.043  Sum_probs=131.6

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccc----cCcEEEEEEecCCCEEEE----EeC-
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLAS----GGL-  127 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-  127 (288)
                      ...+..+...+..+++.+ +++++++...++.|.+|+.. ++........    ...+.++++.++|+++++    |.. 
T Consensus        78 ~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~  155 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRK  155 (305)
T ss_dssp             EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred             EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccc
Confidence            345556677899999999 67777666666789999976 4432222111    134578999999997776    331 


Q ss_pred             ------------CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEE--EEe
Q 023018          128 ------------DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYL--NMF  187 (288)
Q Consensus       128 ------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~  187 (288)
                                  .+.|..|+..+++.....  .......++|+|+++.|+++...      +.|++|++..+...  ..+
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~  233 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF  233 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence                        256888887777654443  33457889999999977777654      78999998654311  111


Q ss_pred             -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          188 -SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       188 -~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                       ......+..+++.++|++ .+++.+ .|.+|+. .++.+..+...    ..+.+++|+|+++.|+.++.++ ++.++
T Consensus       234 ~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          234 ASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             ECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence             112334567889999984 444444 5999998 56777777642    2588899999988888877653 44444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.43  E-value=9e-11  Score=97.82  Aligned_cols=200  Identities=13%  Similarity=0.086  Sum_probs=138.4

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccCC----eeeEeec------cc-cCcEEEEEEecCCCEEEEEeCC------CeEEEEeC
Q 023018           74 PTDATLVATGGGDDKGFFWRINQG----DWASEIQ------GH-KDSVSSLAFSMDGQLLASGGLD------GLVQIWDP  136 (288)
Q Consensus        74 ~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~------~~-~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~  136 (288)
                      +....+++++..+++|+++|+.+.    +.+.++.      .. ...-..+...|+| .++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            645667777888999999999755    5566662      11 1133567788999 66666554      78999999


Q ss_pred             CCCceeEEeccCCC---CEEEEEEcCCCCEEEEec-------------------CCCeEEEEECCcccEEEEeecc--CC
Q 023018          137 SSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGS-------------------EDSTVWMWNADRAAYLNMFSGH--GS  192 (288)
Q Consensus       137 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~--~~  192 (288)
                      .+++.+.++.....   .-..+.|+|+++.+++..                   ...+|.+||+.+++.+.++...  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99999988874322   234588899999888885                   3689999999998888887753  13


Q ss_pred             CeEEEEE--cCCCCEEEEEe------CCCeEEEEeCCCCce--eEEE--cCCCc-------------cccCeEEEEEcCC
Q 023018          193 SVTCGDF--TPDGKTICTGS------DDATLRVWNPKSGEN--IHVI--RGHPY-------------HTEGLTCLTISAD  247 (288)
Q Consensus       193 ~i~~~~~--~p~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~~~-------------~~~~v~~~~~~~~  247 (288)
                      ....+.|  +|+++++++++      .+++|.+|....+..  ...+  .....             .......+.++||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            4455656  99999988777      466887766544321  1111  11000             0234678999999


Q ss_pred             CCEEEEEeC-CCcEEEEEcCC---CcEEEEe
Q 023018          248 STLALSGSK-DGSVHMVNITT---GKVCCLN  274 (288)
Q Consensus       248 ~~~l~~~~~-dg~i~iwd~~t---~~~~~~~  274 (288)
                      |++|+++.. .+.|.+||+..   .+++..+
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I  362 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKV  362 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence            999988765 68999999862   3455444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=7e-11  Score=97.25  Aligned_cols=197  Identities=11%  Similarity=0.035  Sum_probs=134.5

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeC-----CCeEEEEEccCCeeeEeeccc------cCcEEEEEEecCCCEE-EEEe---
Q 023018           62 GHSDEVYSVACSPTDATLVATGGG-----DDKGFFWRINQGDWASEIQGH------KDSVSSLAFSMDGQLL-ASGG---  126 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l-~~~~---  126 (288)
                      +|-..+.++++.+ +++++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++..+ ++-.   
T Consensus        64 ~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            4567899999999 5666665433     578999999998877665422      2346889999865554 4444   


Q ss_pred             CCCeEEEEeCCCCceeEEeccC-----------------------------CCCEEEEEEcCCCCEEEEecCCC-eEEEE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEGP-----------------------------GGGVEWVSWHPRGHIVLAGSEDS-TVWMW  176 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~  176 (288)
                      .++.|.+||+.+++....+..|                             ...+..++|+|+++.|+++...+ .++.+
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            5789999999888766554321                             12368899999999888877655 56665


Q ss_pred             ECCc---cc-----EEE--EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          177 NADR---AA-----YLN--MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       177 d~~~---~~-----~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                      +...   +.     ...  ...++......++++++|.++++...++.|.+||..+++....... + ....+.++++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~-~~~~p~~va~~~  300 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E-KLSWTDSFNFGS  300 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G-GGSCEEEEEECT
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C-ceecCCeeEECC
Confidence            5321   10     000  1112334566789999999888888899999999856654333322 1 345688999999


Q ss_pred             CCCEEEEEeCCCcEE
Q 023018          247 DSTLALSGSKDGSVH  261 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~  261 (288)
                      ++.++++.+..+.+.
T Consensus       301 ~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          301 DGYLYFDCNQLHHSA  315 (343)
T ss_dssp             TSCEEEEECCGGGSG
T ss_pred             CCcEEEEeCcccccc
Confidence            998888877555443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.42  E-value=9.6e-11  Score=91.84  Aligned_cols=197  Identities=9%  Similarity=0.023  Sum_probs=137.8

Q ss_pred             EEEEEEcCCCCcEEEEEeC--CCeEEEEEccCCeeeEeeccccC-cEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCcee
Q 023018           67 VYSVACSPTDATLVATGGG--DDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  142 (288)
                      ...++|+| ++.++++.+.  ++.|.++|+.+++.+..+.-... -...+++.  ++.|+.+ -.++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            68999998 4555555443  57999999999998888652221 12244554  4455444 46899999999999998


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      ..+......-.  .++++++.++++..++.|.++|..+.+.+..+....     ..+..+.|. ++...+....++.|.+
T Consensus       100 ~~i~~g~~~g~--glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQMKDGW--GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECCSSSCC--EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCCCCeE--EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            88864311122  344567777777778999999999988887776322     136678888 6644444446789999


Q ss_pred             EeCCCCceeEEEcCCCc----------cccCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCc
Q 023018          218 WNPKSGENIHVIRGHPY----------HTEGLTCLTISADSTL-ALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~t~~  269 (288)
                      .|+.+++.+..+.....          .......++|+|+++. ++++...+.|++.++....
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            99999999888864210          1135689999998765 4556677899999887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=1e-10  Score=96.59  Aligned_cols=191  Identities=18%  Similarity=0.159  Sum_probs=134.8

Q ss_pred             EcCCCCcEEEEEeC-----CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCCeEEEEeC
Q 023018           72 CSPTDATLVATGGG-----DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDGLVQIWDP  136 (288)
Q Consensus        72 ~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~  136 (288)
                      ..| ++..+++...     ++.|.+.|..+++.+..+..-..+ . ++++|++++++++.          .++.|.+||.
T Consensus        40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             cCC-CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            356 4445555443     679999999999999988755555 4 99999999887765          3678999999


Q ss_pred             CCCceeEEeccCC-------CCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          137 SSGNLKCTLEGPG-------GGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       137 ~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      .+++.+..+....       .....+.++|+|++++++..  ++.|.++|+.+++.+.++.....   ...+....+.++
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~  193 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFF  193 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeE
Confidence            9999888875432       24667999999999888864  68999999999999988864321   222333456777


Q ss_pred             EEeCCCeEEEEeCCC-CceeEEEcCC-CccccCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          208 TGSDDATLRVWNPKS-GENIHVIRGH-PYHTEGLT-CLTIS-ADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~~~~v~-~~~~~-~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +.+.||.+.+.++.+ ++........ .....++. ...|. ++|++++ .+.+|.|++.|+.++.
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            888899999999876 5543222111 00112221 23554 6776655 5568999999997764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.39  E-value=8.1e-11  Score=105.33  Aligned_cols=185  Identities=12%  Similarity=0.192  Sum_probs=136.6

Q ss_pred             CCeEEEEEccCCeeeEeeccccC--------------------------------cEEEEEEecCCCEEEEEeCCC----
Q 023018           86 DDKGFFWRINQGDWASEIQGHKD--------------------------------SVSSLAFSMDGQLLASGGLDG----  129 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~--------------------------------~i~~~~~~~~~~~l~~~~~dg----  129 (288)
                      +|.|+.+|..+++.+..+.....                                ....++++|++..+++++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            68999999999998876643211                                112567888888888887664    


Q ss_pred             ---------------eEEEEeCCCCceeEEeccCC---------CCEEEEEEcCCC---CEEEEecCCCeEEEEECCccc
Q 023018          130 ---------------LVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAA  182 (288)
Q Consensus       130 ---------------~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~  182 (288)
                                     .|..+|..+++.+..++...         .....+....+|   ..+++++.+|.++++|.++++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           59999999999888776421         122223333466   689999999999999999999


Q ss_pred             EEEEeeccC-----------CCe------------------------EEEEEcCCCCEEEEEeCC---------------
Q 023018          183 YLNMFSGHG-----------SSV------------------------TCGDFTPDGKTICTGSDD---------------  212 (288)
Q Consensus       183 ~~~~~~~~~-----------~~i------------------------~~~~~~p~~~~l~~~~~d---------------  212 (288)
                      .+..+....           .++                        ..++++|+..++++...+               
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            887664221           111                        146889988888876432               


Q ss_pred             ----------------------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          213 ----------------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       213 ----------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                                                  |.|..||+.+++.+..+..    ..++....+...+.++++++.+|.+++||
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence                                        7899999999998887763    33344455666778888899999999999


Q ss_pred             cCCCcEEEEe
Q 023018          265 ITTGKVCCLN  274 (288)
Q Consensus       265 ~~t~~~~~~~  274 (288)
                      +.||+++..+
T Consensus       505 ~~tG~~lw~~  514 (677)
T 1kb0_A          505 AATGEKLWEA  514 (677)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCceeeee
Confidence            9999999877

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.37  E-value=1.5e-10  Score=103.81  Aligned_cols=185  Identities=14%  Similarity=0.144  Sum_probs=132.7

Q ss_pred             CCeEEEEEccCCeeeEeeccc-------------------------------cCcEEEEEEecCCCEEEEEeCCCe----
Q 023018           86 DDKGFFWRINQGDWASEIQGH-------------------------------KDSVSSLAFSMDGQLLASGGLDGL----  130 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~-------------------------------~~~i~~~~~~~~~~~l~~~~~dg~----  130 (288)
                      +|.|+.||..+++.+..+...                               ......++++|+..++++++.++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            689999999999987766421                               001125788888888998887764    


Q ss_pred             ---------------EEEEeCCCCceeEEeccC--C-------CCEEEEEEcCCCC---EEEEecCCCeEEEEECCcccE
Q 023018          131 ---------------VQIWDPSSGNLKCTLEGP--G-------GGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAY  183 (288)
Q Consensus       131 ---------------i~i~d~~~~~~~~~~~~~--~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  183 (288)
                                     |..+|..+++.+..++..  .       .++.......+|+   .++.++.+|.++++|.+++++
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999998877642  1       1222222223554   788999999999999999988


Q ss_pred             EEEeeccCC---------------------------------------CeEEEEEcCCCCEEEEEeC-------------
Q 023018          184 LNMFSGHGS---------------------------------------SVTCGDFTPDGKTICTGSD-------------  211 (288)
Q Consensus       184 ~~~~~~~~~---------------------------------------~i~~~~~~p~~~~l~~~~~-------------  211 (288)
                      +........                                       .-..++++|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            744321100                                       0112678888888877532             


Q ss_pred             --------------------------------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCc
Q 023018          212 --------------------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS  259 (288)
Q Consensus       212 --------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  259 (288)
                                                      +|.|+.||+.+++.+..+...    .++....+...+.++++++.||.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg~  497 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADGR  497 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCCc
Confidence                                            377999999999988877642    22333355667789999999999


Q ss_pred             EEEEEcCCCcEEEEe
Q 023018          260 VHMVNITTGKVCCLN  274 (288)
Q Consensus       260 i~iwd~~t~~~~~~~  274 (288)
                      |+.||.+||+++..+
T Consensus       498 l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          498 VIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCccceee
Confidence            999999999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.34  E-value=1.2e-09  Score=84.67  Aligned_cols=188  Identities=10%  Similarity=0.062  Sum_probs=131.0

Q ss_pred             cCCCC--EEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 023018           62 GHSDE--VYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDP  136 (288)
Q Consensus        62 ~h~~~--v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~  136 (288)
                      .|...  ...|.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.... ........+.++.|... -.++.+.+||.
T Consensus        38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            45443  4788888  346666666666  89999999999888876433 33332233345555544 46899999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-----CCeEEEEEcCCCCEEEEEeC
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~~  211 (288)
                      .+.+.+.++..... -..++  +++..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|...+....
T Consensus       115 ~t~~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          115 RNLRQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             TTCCEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             ccCcEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            99999998875432 23444  467777777767899999999998888776421     234557776 6655555556


Q ss_pred             CCeEEEEeCCCCceeEEEcCCCc---------cccCeEEEEEcCCCCEEEEEeC
Q 023018          212 DATLRVWNPKSGENIHVIRGHPY---------HTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                      +..|.+.|.++++.+..+.....         .....+.++|+|+++.|++.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            88999999999999888765311         1235689999998777766654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.33  E-value=1.5e-09  Score=90.46  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=129.0

Q ss_pred             EEEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeeeEeeccccC---cEEEEEEecCCCEEEEEe-----------
Q 023018           67 VYSVACSPTDATLVATGGGD------DKGFFWRINQGDWASEIQGHKD---SVSSLAFSMDGQLLASGG-----------  126 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-----------  126 (288)
                      -..+.+.| ++ +++++..+      |.|.++|..+.+.+.++.....   --..+.|+|+++.+++..           
T Consensus       140 Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          140 LHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             ccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            45567788 55 65565554      7899999999999888863222   234688899999888874           


Q ss_pred             --------CCCeEEEEeCCCCceeEEeccC--CCCEEEEEE--cCCCCEEEEec------CCCeEEEEECCccc--EEEE
Q 023018          127 --------LDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSW--HPRGHIVLAGS------EDSTVWMWNADRAA--YLNM  186 (288)
Q Consensus       127 --------~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~--~~~~  186 (288)
                              ...+|.+||+.+++.+.++...  ......+.|  +|+++++++++      .+++|.+|....+.  ..+.
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence                    3689999999998888877753  134556666  99999887776      46688776654332  1111


Q ss_pred             e--ec----------------cCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC---ceeEEEcCCC-----------
Q 023018          187 F--SG----------------HGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSG---ENIHVIRGHP-----------  233 (288)
Q Consensus       187 ~--~~----------------~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~~-----------  233 (288)
                      +  ..                ....+..|.++|+|++|+++.. .+.|.+||+...   +.+..+....           
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            1  10                0245688999999999988775 679999998532   3444443210           


Q ss_pred             ccccCeEEEEEcCCCCEEEEEe
Q 023018          234 YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      ........+.++|+|++|+++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence            0011357899999999999887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=1.9e-09  Score=84.52  Aligned_cols=183  Identities=12%  Similarity=0.107  Sum_probs=128.4

Q ss_pred             eeeEeeccccC--cEEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEecCCCe
Q 023018           98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDST  172 (288)
Q Consensus        98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~  172 (288)
                      +.+.++. |..  -...+.|++++.++++.+.  ++.|+++|+.+++.+..+..... ....+++.. ++.+++.-.++.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            3455554 443  3578999998654444443  57999999999999888764332 233556652 344455556799


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc--cccCeEEEEEcCCCCE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTISADSTL  250 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~  250 (288)
                      +.++|..+.+.+.++......  ...++++++.|+++..++.|.++|..+.+.+..+.....  ....++.+.|. ++.+
T Consensus        88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            999999999988888643111  233566888888888889999999999888887764211  11246778888 6755


Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEec-----------------ceEEEEEeec
Q 023018          251 ALSGSKDGSVHMVNITTGKVCCLNF-----------------QYTCVAYDLD  285 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t~~~~~~~~-----------------~~~~~~~~~d  285 (288)
                      .+....++.|.+.|..+++++..+.                 ...+++|+++
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~  216 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE  216 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence            5555567899999999999999872                 2368888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.28  E-value=2.7e-09  Score=82.73  Aligned_cols=181  Identities=10%  Similarity=0.065  Sum_probs=127.7

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      ...+.|+  ++.++.+.+.+|.|+++|+.+++.+..+ - .......-..+.++ ..++.-.++.+.+||..+.+.+.++
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            4788887  4677778888899999999999988777 2 23333322233444 4444557899999999999999988


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGSDDATLRVWNP  220 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~~dg~i~i~d~  220 (288)
                      ..... -..+++  +++.|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +|...+....+..|.+.|.
T Consensus       133 ~~~~e-GwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSGE-GWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSSC-CCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCCc-eeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            75432 244554  57777777778999999999998888776422     244667777 6654444446889999999


Q ss_pred             CCCceeEEEcCCC----------ccccCeEEEEEcCCCCEEEEEe
Q 023018          221 KSGENIHVIRGHP----------YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       221 ~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      ++++.+..+....          ....-.+.|+|+|+++.|++.+
T Consensus       209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999888776421          1123578999999765555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.27  E-value=9.3e-09  Score=79.09  Aligned_cols=187  Identities=9%  Similarity=0.018  Sum_probs=128.8

Q ss_pred             cCCC--CEEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeC
Q 023018           62 GHSD--EVYSVACSPTDATLVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDP  136 (288)
Q Consensus        62 ~h~~--~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~  136 (288)
                      .|..  -...+.|++  +.++.+.+..  ..|+.+|+.+++.+..+..... .......+.++.| ...-.++.+.+||.
T Consensus        16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            4543  366899986  4566666654  4899999999998888763322 2222222234444 44457899999999


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccC-----CCeEEEEEcCCCCEEEEEeC
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-----SSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~p~~~~l~~~~~  211 (288)
                      .+.+.+.++..... -..+++  ++..|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+.++....
T Consensus        93 ~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~  168 (243)
T 3mbr_X           93 ATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL  168 (243)
T ss_dssp             TTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             CcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence            99999999885443 245554  56666666678999999999998887776422     245666766 5555555546


Q ss_pred             CCeEEEEeCCCCceeEEEcCCC----------ccccCeEEEEEcCCCCEEEEEe
Q 023018          212 DATLRVWNPKSGENIHVIRGHP----------YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       212 dg~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      +..|.+.|.++++.+..+....          ....-.+.++++|+++.|++.+
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            8899999999999888876331          1223568999999776666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.26  E-value=3e-09  Score=82.52  Aligned_cols=180  Identities=17%  Similarity=0.197  Sum_probs=126.4

Q ss_pred             eeeEeeccccCc--EEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEeccCCCC-EEEEEEcCCCCEEEE-ecCCC
Q 023018           98 DWASEIQGHKDS--VSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLA-GSEDS  171 (288)
Q Consensus        98 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~-~~~dg  171 (288)
                      +.+.++. |...  ...+.|+ ++.++.+++.+|  .|+++|+.+++.+..+...... --.++..  +..|+. .-.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCC
Confidence            3455564 4433  3678888 666666666666  8999999999998888654332 1234443  444444 44589


Q ss_pred             eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCC
Q 023018          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADST  249 (288)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~  249 (288)
                      .+.+||..+.+.+.++...... ..  ++++++.|+.+..++.|.++|..+.+.+..+....  ..-..++.+.|. +|.
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG-~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG-WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC-CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECccCcEEEEEECCCCc-eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            9999999999999988853322 23  34577888887778899999999999888876521  011335567776 676


Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEec----------------ceEEEEEeec
Q 023018          250 LALSGSKDGSVHMVNITTGKVCCLNF----------------QYTCVAYDLD  285 (288)
Q Consensus       250 ~l~~~~~dg~i~iwd~~t~~~~~~~~----------------~~~~~~~~~d  285 (288)
                      +.+..-.++.|.+.|..+|+++..+.                ...++||+|+
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            55555568899999999999998871                3477888874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.5e-09  Score=97.66  Aligned_cols=197  Identities=9%  Similarity=0.040  Sum_probs=127.2

Q ss_pred             EEEEEcCCCCcEEEEEeCC-------------CeEEEEEccCCe----eeEeecc-ccCcEEEEEEecCCCEEEEEeC--
Q 023018           68 YSVACSPTDATLVATGGGD-------------DKGFFWRINQGD----WASEIQG-HKDSVSSLAFSMDGQLLASGGL--  127 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~d-------------g~i~iw~~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~--  127 (288)
                      ..++|+ ++. .|+.++.+             ..|++|++.+..    .+..... |......+.|+|++++|+....  
T Consensus       178 ~~~~Ws-Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            467888 554 44455544             349999987754    2333333 4455788999999998765432  


Q ss_pred             --CCeEEEEeCCCCc-eeEEeccCCCCEEEEEEcCCCCEEEE-ecC---CCeEEEEECCcccE--EEEeeccCCCeEEEE
Q 023018          128 --DGLVQIWDPSSGN-LKCTLEGPGGGVEWVSWHPRGHIVLA-GSE---DSTVWMWNADRAAY--LNMFSGHGSSVTCGD  198 (288)
Q Consensus       128 --dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~---dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~  198 (288)
                        ...|+++++.++. ....+..+....... |++++..|+. +..   .+.|..+++.++..  ...+..+...+.  .
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T  332 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence              3589999998763 344455555555554 5555555544 433   36799999987643  234555555554  8


Q ss_pred             EcCCCCEEEEEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCcEE
Q 023018          199 FTPDGKTICTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD----GSVHMVNITTGKVC  271 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~t~~~~  271 (288)
                      |++++++|+....++   .|++|++..+ ....+...  ....+..+.+++++..|+....+    +.|+.||+.+++..
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p--~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP--GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS--SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC--CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            899898887766544   6899998744 44454422  33456677788887766654443    88999999888754


Q ss_pred             E
Q 023018          272 C  272 (288)
Q Consensus       272 ~  272 (288)
                      .
T Consensus       410 ~  410 (693)
T 3iuj_A          410 L  410 (693)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.21  E-value=8.7e-09  Score=79.94  Aligned_cols=169  Identities=12%  Similarity=0.074  Sum_probs=120.3

Q ss_pred             eeeEeeccccCc--EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCC-EEEEEEcCCCCEEEEecCCCeEE
Q 023018           98 DWASEIQGHKDS--VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDSTVW  174 (288)
Q Consensus        98 ~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~  174 (288)
                      +.+.++. |...  ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ..... --.+++.. ++++++.-.++.+.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence            3455554 4432  3678887 3556677778899999999999988877 33321 23355543 34555555789999


Q ss_pred             EEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCEEE
Q 023018          175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       175 i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~  252 (288)
                      +||..+.+.+.++..... -..++  ++++.|+.+..++.|.++|..+.+.+..+....  ..-..++.+.|. +|.+.+
T Consensus       120 V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             EEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            999999999998885332 23444  568889888889999999999999888876522  112245677777 676555


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEe
Q 023018          253 SGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..-.++.|.+.|..+|+++..+
T Consensus       196 nvw~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          196 NIWHSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             EETTCSEEEEECTTTCBEEEEE
T ss_pred             EECCCCeEEEEeCCCCcEEEEE
Confidence            5546789999999999999887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.21  E-value=9.5e-09  Score=85.42  Aligned_cols=192  Identities=11%  Similarity=0.077  Sum_probs=125.2

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccc---------cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGH---------KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP  148 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  148 (288)
                      ..+++++.++.|+.+|..+++.+..+...         ...+.+. ....+..+++++.++.|..+|..+++.+......
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            45667778899999999999887665532         2223222 2224567888889999999999999988776644


Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCe-----EEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV-----TCGDFTPDGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----~~~~~~p~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ..........  +..+++++.++.|..+|.++++.+..+.......     .....  .+..+++++.++.|..+|..++
T Consensus       133 ~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          133 GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTC
T ss_pred             CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCC
Confidence            3221112222  4578888889999999999999887766432211     11122  2457888888999999999999


Q ss_pred             ceeEEEcCCCcccc----CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          224 ENIHVIRGHPYHTE----GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       224 ~~~~~~~~~~~~~~----~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.+...........    .+..+...|  .+..+++++.+|.+..+|..+|+.+...
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            88776653210000    000011111  2456677778889999999999887655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.21  E-value=1.1e-09  Score=94.31  Aligned_cols=193  Identities=11%  Similarity=0.049  Sum_probs=139.5

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEE-e-cCCCEEEEEe------------------CCCeEEEE
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAF-S-MDGQLLASGG------------------LDGLVQIW  134 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~-~-~~~~~l~~~~------------------~dg~i~i~  134 (288)
                      +..++++...+++|.+.|+.+.+....+.- .......+++ . |+++++++++                  .++.+.+.
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            334555555677899999999997774432 2345778888 4 8999998884                  24679999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC--------------------------------------eEEEE
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--------------------------------------TVWMW  176 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~i~i~  176 (288)
                      |..+.+....+.... ....++++|+|+++++++.+.                                      .|.+.
T Consensus       181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            999998888877544 457788999999998887543                                      36677


Q ss_pred             ECCc--ccE-EEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc------------eeEEEcCCCccccCeE
Q 023018          177 NADR--AAY-LNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGE------------NIHVIRGHPYHTEGLT  240 (288)
Q Consensus       177 d~~~--~~~-~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~v~  240 (288)
                      |.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ....+.    ......
T Consensus       260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG~gP~  334 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LGLGPL  334 (595)
T ss_dssp             ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CCSCEE
T ss_pred             eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CCCCcc
Confidence            7766  433 344432 23457889999999987766 57799999998653            222222    446688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCC----------CcEEEEe
Q 023018          241 CLTISADSTLALSGSKDGSVHMVNITT----------GKVCCLN  274 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iwd~~t----------~~~~~~~  274 (288)
                      .++|+|+|...++.--+++|.+|++.+          .+.+.++
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki  378 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL  378 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe
Confidence            999999995455666799999999987          5666666

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=1.2e-12  Score=108.91  Aligned_cols=147  Identities=17%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCC-CeE-
Q 023018          118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVT-  195 (288)
Q Consensus       118 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~-  195 (288)
                      ++..+++++.||.|+.||..+++.+..+..  +.+.+..+..++..+++++.||.|+.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999888876  4455555556777888888999999999998887666543211 010 


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..+. .+..|++++.++.|+.||..+|+.+..+...   .    ...++|++..|++++.++.|+.||..+|+.+..+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            00111 3457888888999999999999987776542   1    1345667888899999999999999999876554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.19  E-value=6.2e-08  Score=75.50  Aligned_cols=205  Identities=13%  Similarity=0.121  Sum_probs=135.1

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS  137 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  137 (288)
                      .+.+-.+.+..++|+|.++.++++...++.|...|.. ++.+..+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3445567899999999667777778889999999988 777777642 12456788898888766666577889999876


Q ss_pred             CCce---eEEec------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC---cccEEEEee-------ccCCCeEEEE
Q 023018          138 SGNL---KCTLE------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD---RAAYLNMFS-------GHGSSVTCGD  198 (288)
Q Consensus       138 ~~~~---~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~~i~~~~  198 (288)
                      ....   +....      ......-.++|+|.++.|+++.......+|.+.   ....+..+.       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   22221      123457899999988777776654444444442   111122221       1234578999


Q ss_pred             EcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCcc------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          199 FTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYH------TEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       199 ~~p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ++|.. .+++.+.....|.++|.. ++.+..+.-....      ....-.|+|.++|++.++ ++.+.++.+.-.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence            99954 455666677789999976 5566555433211      236688999999985554 677777776543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.19  E-value=2.7e-08  Score=76.51  Aligned_cols=170  Identities=15%  Similarity=0.134  Sum_probs=119.4

Q ss_pred             eeeEeeccccC--cEEEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeEEeccCCCC-EEEEEEcCCCCEEEEecCCCe
Q 023018           98 DWASEIQGHKD--SVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDST  172 (288)
Q Consensus        98 ~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~  172 (288)
                      +.+.+++ |..  -...+.|+. +.++.+.+..  ..|+.+|+.+++.+..+...... --.++.. .++++...-.++.
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            3455554 543  356888986 5555566654  48999999999998887654432 1334443 2344555556899


Q ss_pred             EEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCE
Q 023018          173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTL  250 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  250 (288)
                      +.+||..+.+.+.++.....+ ..++  +++..|+++..++.|.++|..+.+.+..+....  ..-..++-+.|. +|.+
T Consensus        87 v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            999999999999998854332 3444  567888888889999999999998888876521  011345667766 6665


Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          251 ALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+..-.+..|.+.|..+|+++..+
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEE
Confidence            555546789999999999999887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=5.9e-09  Score=89.90  Aligned_cols=203  Identities=15%  Similarity=0.095  Sum_probs=145.3

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeec-----------------------------------c----ccCcEEEEEEec-
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQ-----------------------------------G----HKDSVSSLAFSM-  117 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------------------------------~----~~~~i~~~~~~~-  117 (288)
                      ..|.+|+..|.++|+-+.+++.+..+.                                   +    ..+.......|. 
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t   95 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   95 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred             EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence            356788899999999998887666541                                   0    011222344444 


Q ss_pred             ----CCCEEEEEeC-CCeEEEEeCCCCceeEEeccC-CCCEEEEEE-c-CCCCEEEEec------------------CCC
Q 023018          118 ----DGQLLASGGL-DGLVQIWDPSSGNLKCTLEGP-GGGVEWVSW-H-PRGHIVLAGS------------------EDS  171 (288)
Q Consensus       118 ----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~-~-~~~~~l~~~~------------------~dg  171 (288)
                          +|+++++... ++.|.+.|+.+.+....+..+ ...+..+++ + |++.++++++                  .++
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence                7887777654 567999999999987755433 245888898 5 8999988884                  245


Q ss_pred             eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------
Q 023018          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--------------------------------------  213 (288)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg--------------------------------------  213 (288)
                      .+.++|..+.+.+.++.... ....++++|+|+++++.+.+.                                      
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            79999999998888877433 456788999999999888553                                      


Q ss_pred             eEEEEeCCC--Cce-eEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCc------------EEEEe---
Q 023018          214 TLRVWNPKS--GEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTGK------------VCCLN---  274 (288)
Q Consensus       214 ~i~i~d~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t~~------------~~~~~---  274 (288)
                      .|.|.|.++  +.. +..+.    ......++.++|||+++++++ .+.+|.++|+.+.+            .....   
T Consensus       255 ~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             cEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence            367777776  444 44444    233567789999999887665 57899999999763            34444   


Q ss_pred             cceEEEEEeec
Q 023018          275 FQYTCVAYDLD  285 (288)
Q Consensus       275 ~~~~~~~~~~d  285 (288)
                      .+...++|+++
T Consensus       331 ~gP~h~aF~~d  341 (595)
T 1fwx_A          331 LGPLHTAFDGR  341 (595)
T ss_dssp             SCEEEEEECTT
T ss_pred             CCcceEEECCC
Confidence            56778888775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=2e-08  Score=83.43  Aligned_cols=186  Identities=13%  Similarity=0.085  Sum_probs=126.9

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCE-----
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV-----  152 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----  152 (288)
                      ..+++++.++.|+.+|..+++.+..+.............  +..+++++.++.|..+|..+++.+..+.......     
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            456678888999999999998877665332221112222  4478888899999999999999887765432211     


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCC----eE---EEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 023018          153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS----VT---CGDFTP--DGKTICTGSDDATLRVWNPKSG  223 (288)
Q Consensus       153 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~---~~~~~p--~~~~l~~~~~dg~i~i~d~~~~  223 (288)
                      ......  +..+++++.++.+..+|..+++.+.........    +.   .+...|  .+..+++++.++.|..+|..++
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            112222  457888888999999999999887766532110    00   011122  3567888888999999999999


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.+.....     .....+..  ++..|++++.+|.|..+|..+|+.+...
T Consensus       260 ~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          260 QIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             CEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             cEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence            88766552     22333433  3567788888999999999999987665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=1.7e-07  Score=73.96  Aligned_cols=189  Identities=10%  Similarity=-0.040  Sum_probs=120.2

Q ss_pred             EEEEeCCCeEEEEEccCCeee-----EeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeEEeccCCCCEE
Q 023018           80 VATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVE  153 (288)
Q Consensus        80 l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~  153 (288)
                      |+.+.. +.|+.+++......     ..+.........++|++++..|+.+ ...+.|..+++........+........
T Consensus         4 l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~   82 (267)
T 1npe_A            4 LLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE   82 (267)
T ss_dssp             EEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred             EEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence            334333 57888888754321     1222223456789999976655555 4578999999876654444433335689


Q ss_pred             EEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEE
Q 023018          154 WVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVI  229 (288)
Q Consensus       154 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~~~~~~  229 (288)
                      .+++++.+. ++++-...+.|.++++..................++++|++..|+.+..   .+.|..+++.. .....+
T Consensus        83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~  161 (267)
T 1npe_A           83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL  161 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred             EEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence            999999655 4555556789999998654322222222246789999997777766654   36888888753 333333


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEEE
Q 023018          230 RGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t~~~~~  272 (288)
                      ...  .......++++|++..|+. -...+.|.++++.++....
T Consensus       162 ~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          162 AQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             ECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             EEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            211  2345788999997766554 4456899999998654433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.16  E-value=4.2e-07  Score=74.76  Aligned_cols=207  Identities=11%  Similarity=0.002  Sum_probs=135.0

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ...+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++......
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            34578999998667777776677899999987665444333222344678898765555 44456789999998765444


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEE-EecCC-CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVL-AGSED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWN  219 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d  219 (288)
                      ..+.........++++|.+..|+ +-... +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            44444445689999999555444 44444 7899998864432222222334578999999777776665 466899999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +........+..   .......+++. .+.++++-...+.|..++..+|+.+..+
T Consensus       232 ~dG~~~~~~~~~---~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          232 LDGSHRKAVISQ---GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TTSCSCEEEECS---SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCceEEEEeC---CCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            864433333332   23456677773 4556666666788999997777665554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.16  E-value=2.9e-07  Score=76.85  Aligned_cols=207  Identities=11%  Similarity=0.000  Sum_probs=135.8

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~  142 (288)
                      ...+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            34578899998667777777777899999987665433333222334678888765555 44455678999988755444


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEec-CC-CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWN  219 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d  219 (288)
                      ..+.........++++|.+..|+.+. .. +.|..+++............-.....|+++|++..|+.+. ..+.|..+|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            44444445689999998666555543 44 7899998865433222222334578999998777776665 466899999


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +........+..   .......+++ ..+.++++-...+.|..++..+|+.+..+
T Consensus       275 ~dG~~~~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          275 LDGSHRKAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             TTSCSCEEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCeeEEEEEC---CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            864433333332   2345677787 34556666667789999997777766555

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=6.3e-09  Score=93.13  Aligned_cols=182  Identities=14%  Similarity=0.185  Sum_probs=127.6

Q ss_pred             EEEEEcCCCCcEEEEEeCCC-------------------eEEEEEccCCeeeEeecc--cc-------CcEEEEEEecCC
Q 023018           68 YSVACSPTDATLVATGGGDD-------------------KGFFWRINQGDWASEIQG--HK-------DSVSSLAFSMDG  119 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg-------------------~i~iw~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~  119 (288)
                      ..+++.| ...+++.++.++                   .|..+|..+++.+..++.  |.       .....+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            3577888 555666666553                   599999999998877653  21       112223344467


Q ss_pred             ---CEEEEEeCCCeEEEEeCCCCceeEEeccCCC-----------CE------------------------EEEEEcCCC
Q 023018          120 ---QLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-----------GV------------------------EWVSWHPRG  161 (288)
Q Consensus       120 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~i------------------------~~~~~~~~~  161 (288)
                         ..+++++.+|.|+++|..+++.+..+.....           ++                        ..++++|+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               5788999999999999999998776542210           01                        146888988


Q ss_pred             CEEEEecC-------------------------------------------CCeEEEEECCcccEEEEeeccCCCeEEEE
Q 023018          162 HIVLAGSE-------------------------------------------DSTVWMWNADRAAYLNMFSGHGSSVTCGD  198 (288)
Q Consensus       162 ~~l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  198 (288)
                      .++++...                                           .|.|..||+.+++.+..+. +..++....
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~  483 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGT  483 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCE
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcc
Confidence            87777532                                           2789999999999888776 334444555


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEE
Q 023018          199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS  253 (288)
Q Consensus       199 ~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (288)
                      +...+..+++++.+|.+++||.++++.+..+....  .....-+.|.++|+.+++
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~--~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT--GVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--CCCSCCEEEEETTEEEEE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC--CcccCCEEEEeCCEEEEE
Confidence            66678899999999999999999999998887532  122233566678865443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.14  E-value=4.9e-09  Score=85.28  Aligned_cols=183  Identities=20%  Similarity=0.157  Sum_probs=128.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEE
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW  157 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  157 (288)
                      ..+..++.++.|..++.. ++....+......+.++...+++. +.+++.++.|..+|.. ++....+......+.++..
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            356677788999999988 766666654555566667766665 6667778999999988 8777766655556777778


Q ss_pred             cCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018          158 HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       158 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      .+++.+++. +  +.|..|| .+++.+..+......+.++...+++. |++++.++.|..+|. ++..+..+...   ..
T Consensus       185 d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~---~~  255 (330)
T 3hxj_A          185 GKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG---KR  255 (330)
T ss_dssp             CTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS---SC
T ss_pred             cCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC---CC
Confidence            777765544 4  8899999 77777776665556678888887764 566777888988985 56665555432   22


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+..+.+.+++ .|.+++.+|.|..+|. +++.+..+
T Consensus       256 ~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~  290 (330)
T 3hxj_A          256 IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF  290 (330)
T ss_dssp             CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE
T ss_pred             ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE
Confidence            23345555555 4566778889999995 77766654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.13  E-value=7.5e-07  Score=72.22  Aligned_cols=208  Identities=9%  Similarity=-0.003  Sum_probs=132.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSS  138 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~  138 (288)
                      -....+++|.+.++.++++-...+.|..+++..    ......+...-.....+++.+.+..|+ +-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            345789999986667777777778999999875    222222322223447888987555554 445678999999875


Q ss_pred             CceeEEeccCCCCEEEEEEcCCCCEEEEecC-C-CeEEEEECCcccEEEEe-eccCCCeEEEEEcCCCCEEEEEe-CCCe
Q 023018          139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D-STVWMWNADRAAYLNMF-SGHGSSVTCGDFTPDGKTICTGS-DDAT  214 (288)
Q Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~p~~~~l~~~~-~dg~  214 (288)
                      ......+.........++++|.+..|+.+.. . +.|..+++.... ...+ ...-.....|+++|++..|+.+. ..+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence            5443334434456899999996665555443 3 789888875432 3332 22335678999999887777665 4568


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |..+|+... ....+............+++. .+.++++-...+.|..++..+|+.+..+
T Consensus       188 I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          188 ISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            999998743 333332211122345677775 3556666667789999998888765554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=1.9e-08  Score=89.90  Aligned_cols=185  Identities=14%  Similarity=0.182  Sum_probs=129.6

Q ss_pred             CCeEEEEEccCCeeeEeecccc-------------------------------CcEEEEEEecCCCEEEEEeCCC-----
Q 023018           86 DDKGFFWRINQGDWASEIQGHK-------------------------------DSVSSLAFSMDGQLLASGGLDG-----  129 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~l~~~~~dg-----  129 (288)
                      +|.|+.+|..+++.+..+....                               .....+++.|...+++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999887764210                               0112467888888888887766     


Q ss_pred             --------------eEEEEeCCCCceeEEeccC--C-------CCEEEEEEcCCCC---EEEEecCCCeEEEEECCcccE
Q 023018          130 --------------LVQIWDPSSGNLKCTLEGP--G-------GGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAAY  183 (288)
Q Consensus       130 --------------~i~i~d~~~~~~~~~~~~~--~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  183 (288)
                                    .|..+|..+++.+..++..  .       .+.....+..+++   .++.++.+|.++++|..+++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          4999999999998887642  1       2333333333564   688999999999999999988


Q ss_pred             EEEeeccC------------CCe------------------------EEEEEcCCCCEEEEEe-----------------
Q 023018          184 LNMFSGHG------------SSV------------------------TCGDFTPDGKTICTGS-----------------  210 (288)
Q Consensus       184 ~~~~~~~~------------~~i------------------------~~~~~~p~~~~l~~~~-----------------  210 (288)
                      +.......            .++                        ..++++|+...+++..                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            74433111            000                        1257788766666421                 


Q ss_pred             -------------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          211 -------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       211 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                                         .+|.|..||+.+++.+......    .+.....+...+.++++++.||.|++||..+|+.+
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                               2378999999999988776532    22333344456778899999999999999999999


Q ss_pred             EEe
Q 023018          272 CLN  274 (288)
Q Consensus       272 ~~~  274 (288)
                      ..+
T Consensus       493 ~~~  495 (668)
T 1kv9_A          493 WQF  495 (668)
T ss_dssp             EEE
T ss_pred             eEe
Confidence            876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.12  E-value=2.6e-09  Score=88.21  Aligned_cols=186  Identities=11%  Similarity=-0.027  Sum_probs=125.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeeeEeeccc-------cCcEEEEEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGH-------KDSVSSLAF  115 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~i~~~~~  115 (288)
                      ..+.+..+.....+  .++++| +++.++++.          .++.|.+||+.+++.+.++...       ......+.+
T Consensus        55 t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~  131 (368)
T 1mda_H           55 CGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence            34555666555566  799999 555555554          3688999999999999888633       122357899


Q ss_pred             ecCCCEEEEEeC--CCeEEE--EeCCC-----------------------------------------Ccee--------
Q 023018          116 SMDGQLLASGGL--DGLVQI--WDPSS-----------------------------------------GNLK--------  142 (288)
Q Consensus       116 ~~~~~~l~~~~~--dg~i~i--~d~~~-----------------------------------------~~~~--------  142 (288)
                      +|+|++++++..  ...|.+  +|+.+                                         ++..        
T Consensus       132 SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~  211 (368)
T 1mda_H          132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             cCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence            999999888864  457888  87743                                         0000        


Q ss_pred             ----------------------EEeccCCC-----------------------CEEEEEEcCCCCEEEEecC--------
Q 023018          143 ----------------------CTLEGPGG-----------------------GVEWVSWHPRGHIVLAGSE--------  169 (288)
Q Consensus       143 ----------------------~~~~~~~~-----------------------~i~~~~~~~~~~~l~~~~~--------  169 (288)
                                            ..+.....                       ....++++|+++.++++..        
T Consensus       212 vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             BCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             CCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence                                  00000000                       0001678888887776543        


Q ss_pred             -CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE-EEEEe-CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          170 -DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       170 -dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~-l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                       ++.+.++|+.+.+.+..+.... ....+.|+|++++ +++.. .++.|.++|+.+++.+..+..    ......+++.+
T Consensus       292 ~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v----g~~P~~i~~~~  366 (368)
T 1mda_H          292 AAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL----DKGPESLSVQN  366 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC----CSCCCEEECCC
T ss_pred             cCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC----CCCCCEEEeec
Confidence             2356699999999888887443 6889999999985 55666 589999999999999988874    23344555543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.11  E-value=5.8e-09  Score=93.55  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=131.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccccC----------cE-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHKD----------SV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      ..+++++.++.|+.+|..+++.+-.+.....          .+ ..+.+  .+..+++++.|+.|..+|..+|+.+..+.
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            3566677789999999999998887753221          00 11222  35578888999999999999999887766


Q ss_pred             cC-C-CCEEEEEEcC--CCCEEEEec------CCCeEEEEECCcccEEEEeeccC-------------------------
Q 023018          147 GP-G-GGVEWVSWHP--RGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHG-------------------------  191 (288)
Q Consensus       147 ~~-~-~~i~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-------------------------  191 (288)
                      .. . .....+..+|  .+..+++++      .+|.|+.||.++++.+..+....                         
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~  228 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV  228 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred             CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence            42 1 1111111122  133455543      36899999999999887765210                         


Q ss_pred             ------CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCceeEEEcCCCc------cccCeE
Q 023018          192 ------SSVTCGDFTPDGKTICTGSDDAT-------------------LRVWNPKSGENIHVIRGHPY------HTEGLT  240 (288)
Q Consensus       192 ------~~i~~~~~~p~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~------~~~~v~  240 (288)
                            .....++++|+...+++++.++.                   |..||..+|+.+..+.....      ...++.
T Consensus       229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~  308 (689)
T 1yiq_A          229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMI  308 (689)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcE
Confidence                  01125788898899999887764                   99999999999887764210      111222


Q ss_pred             EEEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          241 CLTISADST---LALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       241 ~~~~~~~~~---~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ......+|.   .|+.++.+|.++++|..||+++...
T Consensus       309 l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          309 LAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence            222233564   7888999999999999999998543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.10  E-value=2.5e-06  Score=71.43  Aligned_cols=210  Identities=8%  Similarity=0.001  Sum_probs=135.9

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCC
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPS  137 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~  137 (288)
                      .-..+.+++|++.++.++++-...+.|+.+++...    .....+.........+++.+.+..| ++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567899999866666666666788988888652    2233333233456789998855544 444567899999987


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCe
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT  214 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~  214 (288)
                      .......+.........|+++|.+..|+.+..  .+.|...++............-.....|+++|++..|+.+. ..+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            66555555444456899999996665555442  47899998865433333333335678999999888887765 4568


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |..+|+........+... ........+++. .+.++++-...+.|..++..+|+.+..+
T Consensus       270 I~~~d~dG~~~~~~~~~~-~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDE-KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEEETTSCCCEEEEECS-STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EEEEeCCCCccEEEEeCC-CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            999998654333333221 122345567763 3455566666789999998888766655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.10  E-value=7.6e-09  Score=84.17  Aligned_cols=196  Identities=17%  Similarity=0.135  Sum_probs=131.3

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ...+..+...+.++...+ ++. ++.++.++.|..++.. ++....+......+.++...+++.+ .+++  +.|..+| 
T Consensus       129 ~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-  201 (330)
T 3hxj_A          129 KWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTI-YFGS--DKVYAIN-  201 (330)
T ss_dssp             EEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCE-EEES--SSEEEEC-
T ss_pred             EEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEE-EEEe--CEEEEEC-
Confidence            333443444455556655 444 5567778999999988 7766666555556677777777764 4444  7899999 


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      .+++....+......+.++...+++. |.+++.++.+..++. +++.+..+......+..+.+.+++ .|++++.+|.|.
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~  278 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLY  278 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEE
T ss_pred             CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEE
Confidence            77777777665556688888888765 555666788888874 566666665444444445555554 577788888999


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .+|. +++.+..+..   ....+.++...+++.+ ..++.+|.+++.....
T Consensus       279 ~~d~-~g~~~~~~~~---~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          279 AINP-DGTEKWNFET---GSWIIATPVIDENGTI-YFGTRNGKFYALFNLE  324 (330)
T ss_dssp             EECT-TSCEEEEEEC---SSCCCSCCEECTTCCE-EEECTTSCEEEEEC--
T ss_pred             EECC-CCcEEEEEEc---CCccccceEEcCCCEE-EEEcCCCeEEEEeccc
Confidence            9996 6776666553   3344666677777764 5688999999887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.08  E-value=4.3e-08  Score=86.02  Aligned_cols=184  Identities=12%  Similarity=0.099  Sum_probs=125.6

Q ss_pred             CCeEEEEEccCCeeeEeeccccCc-------------------------------------E-EEEEEecCCCEEEEEeC
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDS-------------------------------------V-SSLAFSMDGQLLASGGL  127 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~~  127 (288)
                      +|.|+.+|..+++.+.++......                                     + ..+++.+....++.+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            789999999999887765421110                                     0 13566676666766653


Q ss_pred             C----------------CeEEEEeCCCCceeEEeccC----------CCCEEEEEEcCCCC---EEEEecCCCeEEEEEC
Q 023018          128 D----------------GLVQIWDPSSGNLKCTLEGP----------GGGVEWVSWHPRGH---IVLAGSEDSTVWMWNA  178 (288)
Q Consensus       128 d----------------g~i~i~d~~~~~~~~~~~~~----------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~  178 (288)
                      +                +.|..+|..+++.+..++..          ..++. +....+|+   .++.++.+|.++++|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                36999999999988877532          12221 22224663   5778889999999999


Q ss_pred             CcccEEEEeeccC-------------CCe--------------------------EEEEEcCCCCEEEEEe---------
Q 023018          179 DRAAYLNMFSGHG-------------SSV--------------------------TCGDFTPDGKTICTGS---------  210 (288)
Q Consensus       179 ~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~p~~~~l~~~~---------  210 (288)
                      .+++.+..+....             .++                          ..++++|+..+|++..         
T Consensus       334 ~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  413 (571)
T 2ad6_A          334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  413 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccc
Confidence            9998877654221             111                          2357888777777654         


Q ss_pred             ----------------------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 023018          211 ----------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM  262 (288)
Q Consensus       211 ----------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  262 (288)
                                                  .+|.|..||+.+++.+..+...    ..+....+...+..+++++.||.|+.
T Consensus       414 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a  489 (571)
T 2ad6_A          414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKA  489 (571)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEE
Confidence                                        3478999999999987776532    22222222334567778999999999


Q ss_pred             EEcCCCcEEEEe
Q 023018          263 VNITTGKVCCLN  274 (288)
Q Consensus       263 wd~~t~~~~~~~  274 (288)
                      ||.++|+++..+
T Consensus       490 ~D~~tG~~lw~~  501 (571)
T 2ad6_A          490 LDNKDGKELWNF  501 (571)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999999999876

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.07  E-value=1.7e-07  Score=76.19  Aligned_cols=207  Identities=8%  Similarity=0.001  Sum_probs=131.4

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-------------------cccCcEEEEEEec-CC
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------------------GHKDSVSSLAFSM-DG  119 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~~~i~~~~~~~-~~  119 (288)
                      +.+.-....+++|.+ ++.+++++..++.|..|+..++.......                   ........+++.+ ++
T Consensus        14 ~~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            333334457788998 67767778888999999887654322110                   0123568899997 55


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEecc----CCCCEEEEEEcC-CCCEEEEecC-----------------CCeEEEEE
Q 023018          120 QLLASGGLDGLVQIWDPSSGNLKCTLEG----PGGGVEWVSWHP-RGHIVLAGSE-----------------DSTVWMWN  177 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d  177 (288)
                       .|+++...+.|..++..++........    .......+++.+ +|+++++-..                 .+.|..||
T Consensus        93 -~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 -QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             -EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             -cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence             455555455588888775543222111    123478899999 8987776432                 36799999


Q ss_pred             CCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc--eeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ..+++...... .-.....++++|++++|+++ +..+.|.+|++....  ....+..   ... ...+++.++|++.++.
T Consensus       172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEe
Confidence            87665432222 22345679999999977666 456889999987421  1222221   112 6789999999877665


Q ss_pred             eC----------CCcEEEEEcCCCcEEEEe
Q 023018          255 SK----------DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       255 ~~----------dg~i~iwd~~t~~~~~~~  274 (288)
                      ..          .+.|..++. .|+.+..+
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~  275 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDE-FGNILEVI  275 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECT-TSCEEEEE
T ss_pred             cCcccccccCCCccEEEEECC-CCCEEEEE
Confidence            44          467888886 47766655

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.07  E-value=7.8e-09  Score=86.82  Aligned_cols=146  Identities=14%  Similarity=0.060  Sum_probs=106.0

Q ss_pred             cCCCEEEEEeCC-----CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEECCcc
Q 023018          117 MDGQLLASGGLD-----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRA  181 (288)
Q Consensus       117 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~  181 (288)
                      +++++++++...     +.|.++|..+++.+..+.....+  .++++|++++++++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466666666542     69999999999999999876665  899999999888876          3678999999999


Q ss_pred             cEEEEeecc-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC-CCEE
Q 023018          182 AYLNMFSGH-------GSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLA  251 (288)
Q Consensus       182 ~~~~~~~~~-------~~~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  251 (288)
                      +.+..+...       ......+.++|+|++|+++..  ++.|.++|+.+++.+..+....     .  ....|+ ...+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~--~~~~p~g~~~~  232 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----C--YHIFPASPTVF  232 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----E--EEEEEEETTEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----c--eeeccCCCcEE
Confidence            988877532       234567899999999999874  5789999999999888877421     1  122232 2344


Q ss_pred             EEEeCCCcEEEEEcCCCcEE
Q 023018          252 LSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       252 ~~~~~dg~i~iwd~~t~~~~  271 (288)
                      ++.+.||.+.+.++.+++..
T Consensus       233 v~~~~dG~~~~V~~~~~~v~  252 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETK  252 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCE
T ss_pred             EEEcCCCCEEEEECCCCcEE
Confidence            44555666665555444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.02  E-value=3.6e-06  Score=67.78  Aligned_cols=209  Identities=14%  Similarity=0.086  Sum_probs=132.5

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC--CeEEEEeCCCCcee
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLK  142 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~  142 (288)
                      .....++|.+ ++.++++-...+.|..|+.... ....+. .......+++.++++++++....  ..|..++..+++..
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4578999999 6677777767899999997653 333332 23567899999999865554332  24777777777654


Q ss_pred             EEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc-EEEEee---------ccCCCeEEEEEcCCCCEEEEEe-
Q 023018          143 CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFS---------GHGSSVTCGDFTPDGKTICTGS-  210 (288)
Q Consensus       143 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---------~~~~~i~~~~~~p~~~~l~~~~-  210 (288)
                      ..... .......++..+.+..+++-...+.|+++|...++ .+....         ..-.....+  +|++++|+++. 
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            43322 12234555655555555555568999999987542 121110         111234555  78888776655 


Q ss_pred             CCCeEEEEeCCC-Cce--eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--e----cceEEEE
Q 023018          211 DDATLRVWNPKS-GEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCL--N----FQYTCVA  281 (288)
Q Consensus       211 ~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~--~----~~~~~~~  281 (288)
                      ..+.|..|++.. +..  ...+..    ......++++++|+++++....+.|.+++.. |+....  +    ....+++
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a  261 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA  261 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence            567899999864 321  122221    1235568999999887777778899999975 766432  2    4477888


Q ss_pred             Ee
Q 023018          282 YD  283 (288)
Q Consensus       282 ~~  283 (288)
                      |.
T Consensus       262 ~~  263 (306)
T 2p4o_A          262 FG  263 (306)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.01  E-value=1.2e-07  Score=83.32  Aligned_cols=186  Identities=12%  Similarity=0.101  Sum_probs=124.7

Q ss_pred             CCCeEEEEEccCCeeeEeeccccCc-------------------------------------E-EEEEEecCCCEEEEEe
Q 023018           85 GDDKGFFWRINQGDWASEIQGHKDS-------------------------------------V-SSLAFSMDGQLLASGG  126 (288)
Q Consensus        85 ~dg~i~iw~~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~  126 (288)
                      .+|.|+.+|..+++.+-.+......                                     + ..+++.+...+++.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3799999999999887765422110                                     0 1345667777777776


Q ss_pred             CC----------------CeEEEEeCCCCceeEEeccCCC---------CEEEEEEc-CCC---CEEEEecCCCeEEEEE
Q 023018          127 LD----------------GLVQIWDPSSGNLKCTLEGPGG---------GVEWVSWH-PRG---HIVLAGSEDSTVWMWN  177 (288)
Q Consensus       127 ~d----------------g~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d  177 (288)
                      .+                +.|..+|..+++.+..++....         ...-+... .+|   ..++.++.+|.++++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            55                3899999999998887764321         11112332 456   4677789999999999


Q ss_pred             CCcccEEEEeeccC-------------CCe--------------------------EEEEEcCCCCEEEEEe--------
Q 023018          178 ADRAAYLNMFSGHG-------------SSV--------------------------TCGDFTPDGKTICTGS--------  210 (288)
Q Consensus       178 ~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~p~~~~l~~~~--------  210 (288)
                      .++++.+.......             .++                          ..++++|+..++++..        
T Consensus       340 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~  419 (599)
T 1w6s_A          340 RTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE  419 (599)
T ss_dssp             TTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence            99998876654211             111                          2356777666655431        


Q ss_pred             -------------------------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCc
Q 023018          211 -------------------------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS  259 (288)
Q Consensus       211 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  259 (288)
                                                     ..|.|..||+.+++.+......    .+...-.+...+.+++.++.||.
T Consensus       420 ~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg~  495 (599)
T 1w6s_A          420 PFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGY  495 (599)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSE
T ss_pred             cccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCCe
Confidence                                           3478999999999887776521    11111112234667888999999


Q ss_pred             EEEEEcCCCcEEEEe
Q 023018          260 VHMVNITTGKVCCLN  274 (288)
Q Consensus       260 i~iwd~~t~~~~~~~  274 (288)
                      ++.||.+||+++..+
T Consensus       496 l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          496 LKARDSDTGDLLWKF  510 (599)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEe
Confidence            999999999999876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.98  E-value=1.8e-07  Score=82.25  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             CeEEEEeCCCCceeEEecc--CC--------CCEEEEEEc-CCCC---EEEEecCCCeEEEEECCcccEEEEeeccC---
Q 023018          129 GLVQIWDPSSGNLKCTLEG--PG--------GGVEWVSWH-PRGH---IVLAGSEDSTVWMWNADRAAYLNMFSGHG---  191 (288)
Q Consensus       129 g~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  191 (288)
                      +.|..+|..+++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999888753  21        1222 2222 4563   78889999999999999998886654321   


Q ss_pred             ----------CCe--------------------------------EEEEEcCCCCEEEEEe-------------------
Q 023018          192 ----------SSV--------------------------------TCGDFTPDGKTICTGS-------------------  210 (288)
Q Consensus       192 ----------~~i--------------------------------~~~~~~p~~~~l~~~~-------------------  210 (288)
                                .++                                ..++++|+...+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                1345666555555432                   


Q ss_pred             --------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          211 --------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       211 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                                    .+|.|..||+.+++.+......    .++..-.....+.+++.++.||.++.||.+||+++..+
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence                          2578999999999987776532    12211112224667888999999999999999999877

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.92  E-value=1.5e-06  Score=70.51  Aligned_cols=197  Identities=13%  Similarity=0.054  Sum_probs=122.1

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-----ccCcEEEEEEec-CCCEEEEEeC------------
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-----HKDSVSSLAFSM-DGQLLASGGL------------  127 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~------------  127 (288)
                      .+.++++.+.++.+++ +...+.|..++..++.. ..+..     .......+++.+ +|+++++-..            
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            4788999873454444 44445588888765432 22211     113468899999 8876665432            


Q ss_pred             -----CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCCeEEEEECCccc--EEEEeeccCCCeEEEEE
Q 023018          128 -----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDF  199 (288)
Q Consensus       128 -----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~  199 (288)
                           .|.|..||..+++....... ......++++|+++.|+++ +..+.|.+|++....  ....+....+ ...+++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                 36788899877654333222 2235679999999866555 566899999987421  1122211223 788999


Q ss_pred             cCCCCEEEEEeC----------CCeEEEEeCCCCceeEEEcCCCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          200 TPDGKTICTGSD----------DATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       200 ~p~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      .++|++.++...          .+.|..+|.. ++.+..+...... ...+..+++ .++.++++....+.|.++++...
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            999987666544          4678899874 7777666543211 234566666 45666666667788999988643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=1.4e-07  Score=84.29  Aligned_cols=193  Identities=16%  Similarity=0.179  Sum_probs=130.0

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEeeccccCc----------E-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           79 LVATGGGDDKGFFWRINQGDWASEIQGHKDS----------V-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      .+++++.++.|+.+|..+++.+-++......          + ..+.+  .+..+++++.++.|..+|..+++.+..+..
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~  145 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence            5566777899999999999988776532110          0 11222  345788888999999999999998887764


Q ss_pred             CCC-CEEEEEEcC--CCCEEEEecC------CCeEEEEECCcccEEEEeeccC---------------------------
Q 023018          148 PGG-GVEWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHG---------------------------  191 (288)
Q Consensus       148 ~~~-~i~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---------------------------  191 (288)
                      ... ....+...|  .+..++++..      +|.|+.+|.++++.+..+....                           
T Consensus       146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~  225 (668)
T 1kv9_A          146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL  225 (668)
T ss_dssp             SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred             CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeee
Confidence            211 000011111  1345555543      5899999999999888775310                           


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCceeEEEcCCCccc-------cCeEE
Q 023018          192 ----SSVTCGDFTPDGKTICTGSDDA-------------------TLRVWNPKSGENIHVIRGHPYHT-------EGLTC  241 (288)
Q Consensus       192 ----~~i~~~~~~p~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~  241 (288)
                          .....+++.|....++.++.++                   .|..+|+.+|+.+..+.... |.       .+...
T Consensus       226 ~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~-~~~wd~~~~~~~~~  304 (668)
T 1kv9_A          226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP-GDSWDFTATQQITL  304 (668)
T ss_dssp             CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCEEE
T ss_pred             CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC-CccccccCCCCcEE
Confidence                0112467888888998888766                   39999999999988776421 11       22333


Q ss_pred             EEEcCCCC---EEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          242 LTISADST---LALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       242 ~~~~~~~~---~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..+..+|+   .|+.++.+|.++++|..||+++...
T Consensus       305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            33334665   6888999999999999999998543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.91  E-value=4.9e-06  Score=67.43  Aligned_cols=205  Identities=9%  Similarity=-0.051  Sum_probs=132.3

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee-EeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      .+.+++|.+.++.++.+-...+.|..+++...... ..+...-.....+++.+.+..| ++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            46789999866777777777788999998765321 1222122345678888755544 444567899999987554433


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP  220 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~  220 (288)
                      .+.........+++.|.+..|+.+.  ..+.|..+++............-.....|+++|++..|+.+. ..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            4434455689999998655555554  357899988864332222222234568999999777777665 4678999998


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .... ...+...  .......+++.. +.++++-...+.|..++..+|+....+
T Consensus       196 dG~~-~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          196 DGTN-RQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TSCS-CEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCc-eEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            6433 3333221  234456777753 445556666789999999888765544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.89  E-value=7.5e-06  Score=67.28  Aligned_cols=213  Identities=11%  Similarity=-0.038  Sum_probs=132.8

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  143 (288)
                      +..+|.+..+ .+.++++..  ..|+..++........+.. ......++|++....|+.+ ...+.|..+++.......
T Consensus        34 d~~~C~~~~~-~~~ll~~~~--~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TSSCEEESSS-CCEEEEECB--SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCccccccc-CceeEeecc--cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3445666555 454444332  5588788776554444443 3446889999866655554 467889999988766544


Q ss_pred             EeccCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeC
Q 023018          144 TLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-ATLRVWNP  220 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d-g~i~i~d~  220 (288)
                      .+.........+++.+. ++++++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            44433345678999874 445566666789999998654433333333456789999997666665543 4 78888887


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe----cceEEEEEee
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN----FQYTCVAYDL  284 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~  284 (288)
                      .. .....+...  .......++++|++..|+.+ ...+.|..+++........+    ....++++..
T Consensus       190 dG-~~~~~~~~~--~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~  255 (349)
T 3v64_C          190 DG-SGRRIIADT--HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFE  255 (349)
T ss_dssp             TS-CSCEESCCS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred             CC-CCcEEEEEC--CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEEC
Confidence            64 333333221  23457899999866655554 45678999998754433322    3345555533

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.88  E-value=1.3e-05  Score=72.62  Aligned_cols=210  Identities=8%  Similarity=-0.001  Sum_probs=133.6

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCC
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPS  137 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~  137 (288)
                      ....+.+|+|.+.++.++++-...+.|+.+++...    .....+.........|++.+.+..|+.+ ...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            34567789998866667767677788888888652    2223333233445678898877655544 567899999987


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEec-CC-CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCe
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-ED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT  214 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~  214 (288)
                      .......+.........|+++|.+..|+.+. .. +.|...++........+...-.....|++.+.+..|+.+. ..+.
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            6554444444445689999999755555554 33 7899999865444333333345788999998777777765 4568


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |..+++........+.... .......|++.. +.++++-...+.|...+..+|+.+..+
T Consensus       582 I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          582 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEETTSCSCEEEEECTT-TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEecCCCceEEEecCCC-ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            9999986544333333211 223345666643 344455556788999998888665554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.88  E-value=5.1e-06  Score=67.22  Aligned_cols=192  Identities=13%  Similarity=0.171  Sum_probs=127.9

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecC----CC---EEEEEeC---CCeEEEEeC--CCCceeEE
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD----GQ---LLASGGL---DGLVQIWDP--SSGNLKCT  144 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~~~  144 (288)
                      ..+++.....+-|.+||+ +++.+..+..  +.++.+..-|.    ++   ++++...   +++|.+|++  .++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345666667788999999 7888888763  56677766653    22   2333333   579999966  3333 444


Q ss_pred             ecc-------CCCCEEEEEE--cCC-CC-EEEEecCCCeEEEEECC-------cccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          145 LEG-------PGGGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       145 ~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +..       ....+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. .+.+-.+...+...+|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            421       1145666777  674 44 67778888999999882       3466777764 4578888899988999


Q ss_pred             EEEeCCCeEEEEeCC-----CCceeEEEcCCCccccCeEEEEEc--CCCC-EEEEEe-CCCcEEEEEcC-CCcEEEEe
Q 023018          207 CTGSDDATLRVWNPK-----SGENIHVIRGHPYHTEGLTCLTIS--ADST-LALSGS-KDGSVHMVNIT-TGKVCCLN  274 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~iwd~~-t~~~~~~~  274 (288)
                      +.+-.+..|..|+..     +++.+..+.. ......+..|++-  ++++ +|++++ .++.+.+||.. +.+.+..+
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            999998888777854     2334444332 1133467888874  4555 666666 56799999996 67776665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.86  E-value=6.7e-06  Score=68.54  Aligned_cols=211  Identities=11%  Similarity=-0.036  Sum_probs=131.0

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeEEec
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      +|.+..+ .+.++++ . ...|+..++........+.. ......++|++....|+.+ ...+.|..+++........+.
T Consensus        80 ~C~~~~~-~~~l~~~-~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-N-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             CEEECSS-CCEEEEE-C-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             eECCccc-cceeEee-c-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            3445444 4444433 3 25688888876655444443 3456889999866655544 467899999988765544444


Q ss_pred             cCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCC
Q 023018          147 GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-ATLRVWNPKSG  223 (288)
Q Consensus       147 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d-g~i~i~d~~~~  223 (288)
                      ........+++.+. +.++++-...+.|.+.++........+...-.....+++.|.+..|+.+.. . +.|..+++...
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            33345677889875 445555566788999988654433333333356789999997777766553 3 67888888643


Q ss_pred             ceeEEEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          224 ENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      . ...+...  .......|+++|++..|+.+ ...+.|..+++........+    ....++++..+
T Consensus       236 ~-~~~~~~~--~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~  299 (386)
T 3v65_B          236 G-RRIIADT--HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFED  299 (386)
T ss_dssp             S-CEEEECS--SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETT
T ss_pred             C-cEEEEEC--CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECC
Confidence            3 3333221  23457899999866555544 55678999998754433332    33455555433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.86  E-value=1.8e-05  Score=64.02  Aligned_cols=178  Identities=12%  Similarity=0.014  Sum_probs=116.0

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCC----CceeEEeccCCCCEEEEEEcCCC
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSS----GNLKCTLEGPGGGVEWVSWHPRG  161 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~  161 (288)
                      ..|+..++.+......+.. ......++|++.+..|+.+ ...+.|..+++..    ......+.........+++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            5688889887765555543 3456889999876655554 4568999999876    22223333333456789998744


Q ss_pred             -CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeEEEcCCCccccC
Q 023018          162 -HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD--ATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       162 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                       +++++-...+.|.++++........+.........+++.|.+..|+.+...  +.|..+++. |.....+...  ....
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~--~~~~  165 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE--NIQW  165 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS--SCSC
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC--CCCC
Confidence             455555677899999987544333333334567899999977777666543  688888875 4444444221  2356


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 023018          239 LTCLTISADSTLALSG-SKDGSVHMVNITTG  268 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~  268 (288)
                      ...++++|++..|+.+ ...+.|..+++...
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            7899999876666555 45679999999753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.85  E-value=4.8e-07  Score=82.09  Aligned_cols=192  Identities=12%  Similarity=0.074  Sum_probs=113.5

Q ss_pred             CEEEEEEc-CCCCcEEE-EEeCCC----eEEEEEccCC-eeeEe-eccccCcEEEEEEecCCCEEEEEeCC-----CeEE
Q 023018           66 EVYSVACS-PTDATLVA-TGGGDD----KGFFWRINQG-DWASE-IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQ  132 (288)
Q Consensus        66 ~v~~~~~~-~~~~~~l~-~~~~dg----~i~iw~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~  132 (288)
                      .+...+|+ | ++++|| +...+|    .|+++++.++ +.+.. +.   .....++|+|+++.|+....+     ..|+
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            68889999 9 555554 444333    4999999988 63221 21   113467899999987777654     3688


Q ss_pred             EEeCCCCce--eEEec-cCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcc--cE--EEEeeccCCCeEEEEEcCC
Q 023018          133 IWDPSSGNL--KCTLE-GPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRA--AY--LNMFSGHGSSVTCGDFTPD  202 (288)
Q Consensus       133 i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~~p~  202 (288)
                      ++++.++..  ...+. ........+.|+|+|++|+..+.   ...|+++|+.++  ..  .............+.|+. 
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-  329 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-
Confidence            888887642  23333 22334678899999998887653   346889999775  22  222233344556666554 


Q ss_pred             CCEEE-EEeCC----CeEEEEeCCCC-ceeE-EEcCCCccccCeEEEEEcCCCCEEEEEeCCCc--EEEEEc
Q 023018          203 GKTIC-TGSDD----ATLRVWNPKSG-ENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGS--VHMVNI  265 (288)
Q Consensus       203 ~~~l~-~~~~d----g~i~i~d~~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~  265 (288)
                      +..|+ ....+    ..|..+++.++ .... .+...  ....+..+.+. .+.++++...+|.  |+++++
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~--~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS--EDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC--SSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC--CCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            55554 44433    36777887653 2222 23321  11234555554 3345556666774  566665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.81  E-value=5.2e-06  Score=64.63  Aligned_cols=182  Identities=15%  Similarity=0.213  Sum_probs=122.2

Q ss_pred             eeccccCcEEEEEEecCCCE-EEEEeCCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018          102 EIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       102 ~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  179 (288)
                      .+.+-...+..++|+|++.. +++...++.|...|.. ++.+..+.. .....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34455567999999997664 4556778999999988 887777643 22458889999888776776677899999876


Q ss_pred             cccE---EEEee------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeEEEcC----CCccccCeEEEE
Q 023018          180 RAAY---LNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK---SGENIHVIRG----HPYHTEGLTCLT  243 (288)
Q Consensus       180 ~~~~---~~~~~------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~----~~~~~~~v~~~~  243 (288)
                      ....   +....      ........++|+|.++.|+++.......+|.+.   ....+..+..    .......+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221      123456899999999888887766555555443   1122222211    011234578999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-------------cceEEEEEeec
Q 023018          244 ISA-DSTLALSGSKDGSVHMVNITTGKVCCLN-------------FQYTCVAYDLD  285 (288)
Q Consensus       244 ~~~-~~~~l~~~~~dg~i~iwd~~t~~~~~~~-------------~~~~~~~~~~d  285 (288)
                      ++| .+.+++.......+.++|.. |+++..+             ....+++|.++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~  234 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS  234 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC
Confidence            999 55677777778889999966 5666654             15678888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.79  E-value=2.4e-06  Score=75.08  Aligned_cols=193  Identities=15%  Similarity=0.136  Sum_probs=128.3

Q ss_pred             EEEEEeC-CCeEEEEEc-cCCeeeEeeccccC-----------cEEEEEEecCCCE----EEEEeCCCeEEEEeCCCCce
Q 023018           79 LVATGGG-DDKGFFWRI-NQGDWASEIQGHKD-----------SVSSLAFSMDGQL----LASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        79 ~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~  141 (288)
                      .+++++. ++.|+-+|. .+++.+-++.....           ....+++.|.+..    |++++.++.|..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4555666 789999999 89988777653211           0123455444444    88888999999999999998


Q ss_pred             eEEeccCCC----CEE-EEEEcCCCCEEEEec------CCCeEEEEECCcccEEEEeeccCCC-----------------
Q 023018          142 KCTLEGPGG----GVE-WVSWHPRGHIVLAGS------EDSTVWMWNADRAAYLNMFSGHGSS-----------------  193 (288)
Q Consensus       142 ~~~~~~~~~----~i~-~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~-----------------  193 (288)
                      +........    .+. ..... ++ .+++++      .+|.|+.+|.++++.+..+......                 
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            877653220    111 11111 33 555555      3799999999999988776532211                 


Q ss_pred             --------------------e-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCceeEEEcCCCc--
Q 023018          194 --------------------V-TCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPY--  234 (288)
Q Consensus       194 --------------------i-~~~~~~p~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~--  234 (288)
                                          + ..+++.+....++.++.+                +.|..+|..+|+.+..+.....  
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                                0 134566777788887765                3799999999999887765321  


Q ss_pred             -----cccCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          235 -----HTEGLTCLTIS-ADS---TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       235 -----~~~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                           ...++. +... .+|   ..++.++.+|.++++|..||+++...
T Consensus       302 wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          302 WDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence                 111221 2222 467   56778899999999999999998765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.77  E-value=4.9e-05  Score=63.63  Aligned_cols=180  Identities=11%  Similarity=0.006  Sum_probs=120.7

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCC----ceeEEeccCCCCEEEEEEcC-C
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHP-R  160 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~-~  160 (288)
                      ..|+..++........+. ....+..++|++....|+.+ ...+.|+.+++...    .....+.........+++.+ .
T Consensus        92 ~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred             ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence            678888888765554444 34567899999876666555 45688999988752    23333443445688999998 4


Q ss_pred             CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccC
Q 023018          161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       161 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      ++++++-...+.|.+.++........+...-.....|++.|.+.+|+.+..  .+.|...++........+..   ....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---~l~~  247 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---NIQW  247 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---SCSC
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---CCCc
Confidence            555666667789999998765544444434456789999997777766653  36899998864333333322   2356


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcE
Q 023018          239 LTCLTISADSTLALSG-SKDGSVHMVNITTGKV  270 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~  270 (288)
                      ...|++++++..|+.+ ...+.|..+++.....
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            7899999877666655 4467899999875543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.75  E-value=3.6e-06  Score=73.83  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=99.6

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeecccc----CcEEE-EEEecCCCEEEEEeC------CCeEEEEeCCCCceeEEec
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGHK----DSVSS-LAFSMDGQLLASGGL------DGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  146 (288)
                      ..+++++.++.|..+|..+++.+..+....    ..+.+ .... + ..+++++.      +|.|..+|..+++.+..+.
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            356677889999999999998877654211    01111 1111 3 35666654      7999999999999887765


Q ss_pred             cCCCC--------------------------------------EEEEEEcCCCCEEEEecCC----------------Ce
Q 023018          147 GPGGG--------------------------------------VEWVSWHPRGHIVLAGSED----------------ST  172 (288)
Q Consensus       147 ~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~d----------------g~  172 (288)
                      .....                                      ...+++.+....++.++.+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                      0135667766677666542                36


Q ss_pred             EEEEECCcccEEEEeecc----------CCCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018          173 VWMWNADRAAYLNMFSGH----------GSSVTCGDFTPDGK---TICTGSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       173 i~i~d~~~~~~~~~~~~~----------~~~i~~~~~~p~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                      |..+|.++++.+..++..          ..++. +...++|+   .++.++.+|.++++|..+|+.+..+.
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence            999999999988877632          12222 22234664   57788899999999999999877664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.75  E-value=3.1e-05  Score=70.78  Aligned_cols=199  Identities=12%  Similarity=0.085  Sum_probs=132.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc--------ccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------HKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ...|.++...+ ++.+ ..|+.++-|..|+..+++.......        ....|.++...+++..|.+|+.++-|.+|+
T Consensus       356 ~~~V~~i~~d~-~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDK-DKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECT-TSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECC-CCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            35699999887 5544 4577777799999877654332211        235789999888887566777777799999


Q ss_pred             CCCCceeEEec----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee------ccCCCeEEEEEcCCCCE
Q 023018          136 PSSGNLKCTLE----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       136 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~p~~~~  205 (288)
                      ..+++......    .+...|.++...+++.+.+.. . +-+.+|+..+++......      .....|.++...++|..
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            88776443321    134579999998888755544 4 458899987765433221      12357899999888875


Q ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcC----CCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          206 ICTGSDDATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .+ |+. +.|..||..++..  .+..    .......|.++...++|.+.++. .. -|..||..+++...
T Consensus       512 Wi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~  576 (795)
T 4a2l_A          512 WI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR  576 (795)
T ss_dssp             EE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE
T ss_pred             EE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE
Confidence            55 444 5588899876654  3321    11234578999999988866544 34 58889988775443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=9.4e-06  Score=68.64  Aligned_cols=202  Identities=9%  Similarity=0.116  Sum_probs=120.6

Q ss_pred             CEEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CC----eEEEEeCCCC
Q 023018           66 EVYSVACSP-TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DG----LVQIWDPSSG  139 (288)
Q Consensus        66 ~v~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~  139 (288)
                      ....|+++| .++.++++ ...+.|+.+++..+....... .......++|++++++|+++.. .+    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            357889997 24554444 433889999988766544443 4455789999999996666653 22    3333443 23


Q ss_pred             cee--EEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEEEe-CCCe
Q 023018          140 NLK--CTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGS-DDAT  214 (288)
Q Consensus       140 ~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~~-~dg~  214 (288)
                      ...  ..+.. ......++++| ++.++++-..++.|+.++...+........ .......++|+|++++|+.+. ..+.
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            221  22222 23456788999 777777777789999999976654222222 224578899999999665554 5678


Q ss_pred             EEEEeCCC--Cce--eEEEcCC---Cc---------cccCeE-EEEEc--------CCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          215 LRVWNPKS--GEN--IHVIRGH---PY---------HTEGLT-CLTIS--------ADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       215 i~i~d~~~--~~~--~~~~~~~---~~---------~~~~v~-~~~~~--------~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      |..++...  +..  +..+.+.   ..         .-.... .++..        +++.++++-...+.|+.++ .+|+
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~  372 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR  372 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence            98877542  221  2222221   00         011233 45553        3466666656677888888 4565


Q ss_pred             EEE
Q 023018          270 VCC  272 (288)
Q Consensus       270 ~~~  272 (288)
                      ...
T Consensus       373 v~~  375 (430)
T 3tc9_A          373 VTT  375 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.70  E-value=3.4e-05  Score=61.88  Aligned_cols=207  Identities=11%  Similarity=0.043  Sum_probs=130.2

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-ecc----c--cCcEEEEEE---ecCCCEEEEEe---
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQG----H--KDSVSSLAF---SMDGQLLASGG---  126 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~----~--~~~i~~~~~---~~~~~~l~~~~---  126 (288)
                      +....----+++|++.++.++++.-..|+|..|+...+..... +..    .  ...+..|.|   .|+++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            3344444557899885666665555789999999876543333 321    1  113578999   68877766543   


Q ss_pred             ----------CCCeEEEEeCC---CCceeEEecc-------------CCCCEEEEEEcCCCCEEEEecCC-CeEEEEECC
Q 023018          127 ----------LDGLVQIWDPS---SGNLKCTLEG-------------PGGGVEWVSWHPRGHIVLAGSED-STVWMWNAD  179 (288)
Q Consensus       127 ----------~dg~i~i~d~~---~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~  179 (288)
                                .+..|..||+.   +++.+....-             .......++..++|+..++++.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      25789999999   7776655431             12358899999999999999988 888888875


Q ss_pred             cccEEEEee------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eEEEc-CCCccccCeEEE-EEcCCCC
Q 023018          180 RAAYLNMFS------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--IHVIR-GHPYHTEGLTCL-TISADST  249 (288)
Q Consensus       180 ~~~~~~~~~------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~~~v~~~-~~~~~~~  249 (288)
                      .. .+..+.      ......+.|+++|++..|++....|.|..+|+.+...  +..-. +..........+ ....+|+
T Consensus       168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence            43 232221      1122367999999999998887799999999884322  11110 111111223443 3334677


Q ss_pred             E-EEEEeCCCcEEEEEcCC
Q 023018          250 L-ALSGSKDGSVHMVNITT  267 (288)
Q Consensus       250 ~-l~~~~~dg~i~iwd~~t  267 (288)
                      . |++.+..+.+.+.+...
T Consensus       247 vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEECSST
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            7 44555566666655443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.70  E-value=4.4e-05  Score=69.77  Aligned_cols=196  Identities=12%  Similarity=0.081  Sum_probs=128.4

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec----cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ----GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      ...|.++...+ ++.+|..|+.++-|.+|+..+++......    .....|.++...+++.+.+. +..| |.+|+..++
T Consensus       405 ~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~  481 (795)
T 4a2l_A          405 SNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQR  481 (795)
T ss_dssp             CSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTT
T ss_pred             CccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCC
Confidence            35689998877 56645567776779999988766433221    13457899998888875544 4444 888998776


Q ss_pred             ceeEEecc------CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-------ccCCCeEEEEEcCCCCEE
Q 023018          140 NLKCTLEG------PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-------GHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       140 ~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~p~~~~l  206 (288)
                      +.......      ....|.++...+++.+.+...  +-+..|+..+++.  .+.       .....|.++...++|.+.
T Consensus       482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW  557 (795)
T 4a2l_A          482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIW  557 (795)
T ss_dssp             EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred             eEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence            54332211      235689999998887655544  5688888876654  222       134578999988888755


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      +. +.. .|..||..+++. ..+.... .....|.++...++|.+.+++ . +-|..|+..+++..
T Consensus       558 ig-T~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~  618 (795)
T 4a2l_A          558 VG-TRE-GFYCFNEKDKQI-KRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR  618 (795)
T ss_dssp             EE-ESS-CEEEEETTTTEE-EEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE
T ss_pred             EE-eCC-CceeECCCCCcE-EEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE
Confidence            54 444 588899876543 3333211 123468888888888776654 3 45788888876544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.70  E-value=1.8e-07  Score=84.06  Aligned_cols=207  Identities=9%  Similarity=0.003  Sum_probs=123.3

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC----CeeeEeeccccCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCc
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~  140 (288)
                      .+.+++|.+.++.++++-...+.|+.+++..    ......+.........|++.+.+..| ++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            4567888885555555555668898888875    22222222111223567777544444 444556889999987655


Q ss_pred             eeEEeccCCCCEEEEEEcCCCCEEEEecC-C-CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEE
Q 023018          141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRV  217 (288)
Q Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i  217 (288)
                      ....+.........|+++|.+.+|+.+.. . +.|..+++........+...-.....|+|+|++..|+.+. ..+.|.+
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            44444333345678899986555555443 2 6888887754322222222234567899999766665554 5678999


Q ss_pred             EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +++... ....+............|++..+ .++++....+.|..++..+|+.+..+
T Consensus       567 ~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          567 IDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             ECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            998643 33344321111223345566543 45555556789999999999888766

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.68  E-value=4.8e-05  Score=61.58  Aligned_cols=179  Identities=9%  Similarity=-0.006  Sum_probs=114.2

Q ss_pred             CeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCce-eEEeccCCCCEEEEEEcC-CC
Q 023018           87 DKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNL-KCTLEGPGGGVEWVSWHP-RG  161 (288)
Q Consensus        87 g~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~  161 (288)
                      ..|+..++....  ....+.. ......+.|.+....|+ +-...+.|..+++..... ...+...-.....+++.+ .+
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            678888887653  2222222 23456899998655554 445678899999876632 222222334567789987 45


Q ss_pred             CEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccCe
Q 023018          162 HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEGL  239 (288)
Q Consensus       162 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v  239 (288)
                      .++++-...+.|.++++........+.........+++.|.+.+|+.+..  .+.|..+++.. .....+...  .....
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~--~l~~P  168 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS--EIYWP  168 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS--SCSCE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC--CCCCc
Confidence            55556566789999998654332223234456789999997777776653  57888888763 333333221  23456


Q ss_pred             EEEEEcCCCCEEEEE-eCCCcEEEEEcCCCc
Q 023018          240 TCLTISADSTLALSG-SKDGSVHMVNITTGK  269 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~  269 (288)
                      ..++++|++..|+.+ +..+.|..+++....
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~  199 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTN  199 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCc
Confidence            899999966655554 456889999987543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.66  E-value=7.3e-05  Score=67.85  Aligned_cols=183  Identities=11%  Similarity=0.005  Sum_probs=118.1

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCC----ceeEEeccCCCCEEEEEEcCCC
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRG  161 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~  161 (288)
                      ..|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++...    .....+.........|++.+.+
T Consensus       404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            567777877655544444 345667899998655554 4445688998888753    2333344344557789998866


Q ss_pred             C-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCceeEEEcCCCccccC
Q 023018          162 H-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-ATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       162 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      + ++++-...+.|.+.++........+.........|++.|...+|+.+.. . +.|.+.++... ....+...  ....
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~--~l~~  559 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE--NIQW  559 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS--SCSC
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeC--CCCC
Confidence            4 5555566789999999765443334334456899999998777776653 2 67999998644 33333321  3356


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEE
Q 023018          239 LTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~  273 (288)
                      ...|++++.+..|+.+ ...+.|..+++........
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            8899999866666655 4457899999876544433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.64  E-value=1.9e-05  Score=66.76  Aligned_cols=202  Identities=12%  Similarity=0.125  Sum_probs=122.9

Q ss_pred             CEEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC-----eEEEEeCCC
Q 023018           66 EVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSS  138 (288)
Q Consensus        66 ~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~  138 (288)
                      ....++|.|.  ++.++++-.. +.|+.++..++....... .......++|+++++ |+++...+     .+...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            3568999983  3555544333 889999988777655443 444578999999999 44444321     233333222


Q ss_pred             Cce-eEEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECCcccEEEEe-ec-cCCCeEEEEEcCCCCEEEEEe-CCC
Q 023018          139 GNL-KCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF-SG-HGSSVTCGDFTPDGKTICTGS-DDA  213 (288)
Q Consensus       139 ~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~~p~~~~l~~~~-~dg  213 (288)
                      +.. ...+. .......++++| ++.++++-..++.|+.++..++.....+ .. .......++|+|++++|+.+. ..+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211 11222 223456789999 6777667667889999999877652222 21 122235699999999666655 467


Q ss_pred             eEEEEeCC--CCce--eEEEcCC---C---------ccccCeEEEEE---------cCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          214 TLRVWNPK--SGEN--IHVIRGH---P---------YHTEGLTCLTI---------SADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       214 ~i~i~d~~--~~~~--~~~~~~~---~---------~~~~~v~~~~~---------~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      .|+.++..  ++..  ...+.+.   .         ..-.....+++         .+++.++++-...+.|+.++. +|
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89997754  2321  1222221   0         01234677899         677777777777789999984 56


Q ss_pred             cEEE
Q 023018          269 KVCC  272 (288)
Q Consensus       269 ~~~~  272 (288)
                      +...
T Consensus       375 ~v~t  378 (433)
T 4hw6_A          375 RVTT  378 (433)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            5443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.62  E-value=2.1e-05  Score=69.11  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=124.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCc---------EEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDS---------VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      ++.+ ++++.++.|+.+|..+++.+-++......         ...+++  .+..+++++.++.|..+|..+++.+..+.
T Consensus        68 ~g~v-yv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVI-YVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEE-EEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEE-EEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            4444 44555345999999999887776533211         011222  34578888899999999999999887765


Q ss_pred             cCCC----CEE-E-EEEcC--CCC-EEEEec------CCCeEEEEECCcccEEEEeeccCCCe-----------------
Q 023018          147 GPGG----GVE-W-VSWHP--RGH-IVLAGS------EDSTVWMWNADRAAYLNMFSGHGSSV-----------------  194 (288)
Q Consensus       147 ~~~~----~i~-~-~~~~~--~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~i-----------------  194 (288)
                      ....    .+. . +....  +++ .+++++      .+|.|+.+|..+++.+.........+                 
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            3320    011 1 11111  233 566655      37899999999998877654211000                 


Q ss_pred             ------------------------EEEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCcee
Q 023018          195 ------------------------TCGDFTPDGKTICTGSD--------------------D----ATLRVWNPKSGENI  226 (288)
Q Consensus       195 ------------------------~~~~~~p~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~  226 (288)
                                              ..+++.|....++.+..                    |    +.|..+|..+|+.+
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                                    13456677778877763                    2    58999999999998


Q ss_pred             EEEcCCCc-------cccCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          227 HVIRGHPY-------HTEGLTCLTIS-ADS---TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       227 ~~~~~~~~-------~~~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..+.....       ...++. +... .+|   ..|+.++.+|.++++|..+|+++...
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence            87754210       112221 2222 466   37888999999999999999998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.60  E-value=0.00018  Score=63.69  Aligned_cols=204  Identities=10%  Similarity=-0.051  Sum_probs=134.9

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~  143 (288)
                      ..+.+++|++.++.++++-..++.|..+++........+.........+++.+.+..|+.+ ...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            4578999999777777777778999999887654433333222345678888766655444 456889999987554333


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP  220 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~  220 (288)
                      .+...-.....|++.|....|+.+.  ..+.|...++...... .+...-.....|++++++..|+.+. ..+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            3334445689999999555555544  2578888887654332 2223445678999999878777765 4668999998


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ..... ..+..   .......+++.. +.++++-...+.|...|..+|+....+
T Consensus       196 dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          196 LGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            75443 33332   223456777765 445555555789999998888655544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=4.4e-05  Score=69.63  Aligned_cols=199  Identities=12%  Similarity=0.068  Sum_probs=126.6

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee---ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      ..|.++...+ ++.+ ..|+.++-|..|+..++......   ......|.++...+++.+ .+|+.++-|..++..+++.
T Consensus       363 ~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          363 KVVSSVCDDG-QGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SCEEEEEECT-TSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEE
T ss_pred             cceEEEEEcC-CCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcE
Confidence            5688998877 4444 45665566888887654332211   113457889888877764 4466666788999877654


Q ss_pred             eEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeecc-----CCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          142 KCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-----GSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       142 ~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      .....  .....|.++...+++.+ ..|+. +-|..|+..+++........     ...|.++...++|.+. .|+..+.
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~G  516 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGG  516 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSC
T ss_pred             EEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCC
Confidence            33221  13457999998887764 44555 56899998776543322211     3578999988887654 4555445


Q ss_pred             EEEEeCCCCceeEEEcCC-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          215 LRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      |..||..+++ ...+... ......|.++...++|.+.++ +..|.|..||..+++..
T Consensus       517 l~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          517 VGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ  572 (781)
T ss_dssp             EEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE
T ss_pred             EEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE
Confidence            8889987654 3334321 123456889998888876554 44665588888877643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.56  E-value=2.6e-05  Score=62.54  Aligned_cols=157  Identities=8%  Similarity=0.105  Sum_probs=109.6

Q ss_pred             EEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeEE-eccC------CCCEEEEEE---cCCCCEEEEec-----------
Q 023018          111 SSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCT-LEGP------GGGVEWVSW---HPRGHIVLAGS-----------  168 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~~------~~~i~~~~~---~~~~~~l~~~~-----------  168 (288)
                      .++.|++....|..++ ..|+|..|+...+..... +...      ...+..|.|   .|.++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4678988666666665 789999999876644333 2211      113689999   68877777543           


Q ss_pred             --CCCeEEEEECC---cccEEEEeec-------------cCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeEEE
Q 023018          169 --EDSTVWMWNAD---RAAYLNMFSG-------------HGSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHVI  229 (288)
Q Consensus       169 --~dg~i~i~d~~---~~~~~~~~~~-------------~~~~i~~~~~~p~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  229 (288)
                        .+..+..||+.   +++.+.....             .......++..++|+..++++.. +.|..++... +.+..+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeee
Confidence              25789999998   7766554431             11247899999999999999988 8888888763 333332


Q ss_pred             c-CC--CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 023018          230 R-GH--PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG  268 (288)
Q Consensus       230 ~-~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~  268 (288)
                      . ..  .......+.++++|++..|++....|.+..+|+.+.
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            1 11  112334678999999999998877999999998754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.55  E-value=7.6e-05  Score=66.06  Aligned_cols=207  Identities=10%  Similarity=-0.038  Sum_probs=127.6

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCce
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNL  141 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~  141 (288)
                      -....+++|++.++.++++-...+.|..+++..... ...+...-.....+++.+.+..|+.+ ...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            345789999986666666666678898888876532 22333222467889999866655544 5678999999876544


Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 023018          142 KCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVW  218 (288)
Q Consensus       142 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~  218 (288)
                      ...+...-.....|++.|.+..|+.+..  .+.|...++............-.....|++++++..|+.+. ..+.|..+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            3344344456788999997555555443  46787777754332222322345678999999777777665 45679999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |+........+...   ......+++..+ .++++-...+.|...|..+|+....+
T Consensus       199 ~~dG~~~~~~~~~~---~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          199 NLDGTNRQAVVKGS---LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             SSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             cCCCCccEEEEeCC---CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            98654333222211   122345677655 44444455788999999888766554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=9.7e-06  Score=68.56  Aligned_cols=152  Identities=8%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             EEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CC----eEEEEECCcccE
Q 023018          110 VSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DS----TVWMWNADRAAY  183 (288)
Q Consensus       110 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~  183 (288)
                      ...|+++| ++..|+++...+.|+.+|+..+....... .......++|+++++.|+++.. ++    .+.+++. .+..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            36789997 45566666555889999988766544443 4556899999999996666554 22    3444443 3322


Q ss_pred             E--EEeeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE-EEeCCCc
Q 023018          184 L--NMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGS  259 (288)
Q Consensus       184 ~--~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~  259 (288)
                      .  ..+. .......++++| ++.++++-...+.|+.|+..++.........  .......++|+|++++|+ +-...+.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~--~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ--DSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS--SSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC--CCCcceeEEEcCCCCEEEEEECCCCE
Confidence            1  2222 123457788999 6666666667789999999866542222221  224567899999999554 4456788


Q ss_pred             EEEEEcC
Q 023018          260 VHMVNIT  266 (288)
Q Consensus       260 i~iwd~~  266 (288)
                      |+.++..
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9998865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.54  E-value=0.00019  Score=58.32  Aligned_cols=193  Identities=8%  Similarity=0.107  Sum_probs=109.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ..+..+.+.+ ++.+++++ .+|.|.. ....+ ............+..+.+.+++.+++++...+..+-.|- .+..-.
T Consensus       122 ~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~  197 (327)
T 2xbg_A          122 GSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE  197 (327)
T ss_dssp             SCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred             CCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence            3466777765 45565555 4554422 11222 222333345567899999998887777654443444442 122211


Q ss_pred             Ee-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 023018          144 TL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKTICTGSDDATLRVW  218 (288)
Q Consensus       144 ~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~~l~~~~~dg~i~i~  218 (288)
                      .+ ......+..+.+.+++..+++ +.+|.+++.+...++.-..+..    ....+..+.+.+++..++++. +|.| .+
T Consensus       198 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~  274 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LC  274 (327)
T ss_dssp             EEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EE
T ss_pred             ECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EE
Confidence            11 234456889999998876654 4568887764333332222221    223588999998777666554 6766 34


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      ....|+....+.........+..+.|.+++. +++++.+|.|.-++-
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            4455655555542211234577888876554 566678887776653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=7.3e-06  Score=73.25  Aligned_cols=114  Identities=14%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             EEEEcCCCCcEEEEEeCCC-----------eEEEEEccCCeeeE--eecc-ccCcEEEEEEecCCCEEEEEe-CCCeEEE
Q 023018           69 SVACSPTDATLVATGGGDD-----------KGFFWRINQGDWAS--EIQG-HKDSVSSLAFSMDGQLLASGG-LDGLVQI  133 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  133 (288)
                      ++++.+.++++++.|+.+.           .+.+||..+++...  .+.. +.....++++..+++++++|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            4555554667777776543           58899988765432  2221 223334567788999888888 4568999


Q ss_pred             EeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEec-CC-----CeEEEEECCccc
Q 023018          134 WDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGS-ED-----STVWMWNADRAA  182 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~  182 (288)
                      ||..+++....-..+.. .-.+++..+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99887754332211111 123455667899999988 34     468999987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=6.9e-05  Score=63.91  Aligned_cols=204  Identities=14%  Similarity=0.102  Sum_probs=122.8

Q ss_pred             CEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccc---cCcEEEEEE-------ecCCCEEEEEeCCC-----
Q 023018           66 EVYSVACSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGH---KDSVSSLAF-------SMDGQLLASGGLDG-----  129 (288)
Q Consensus        66 ~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~i~~~~~-------~~~~~~l~~~~~dg-----  129 (288)
                      ....|+|.|. ++.++++....+.|++.|+.++.....+...   ......++|       ++++++|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 4556666555567888888877665544321   234789999       99999676665543     


Q ss_pred             --eEEEEeCCC-Ccee-----EEeccCCCCEEEEEEcC-CCCEEEEecCCCeEEEEECC-------cccE----------
Q 023018          130 --LVQIWDPSS-GNLK-----CTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNAD-------RAAY----------  183 (288)
Q Consensus       130 --~i~i~d~~~-~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~----------  183 (288)
                        .|.+++... +...     ..+... .....++.+| ++.++++-..++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665333 1221     222211 2345788899 55566667778899999987       4432          


Q ss_pred             -EEE-ee-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCce--eEEEcCC---Cc---------cccCeE-EE
Q 023018          184 -LNM-FS-GHGSSVTCGDFTPDGKTICTGS-DDATLRVWNP--KSGEN--IHVIRGH---PY---------HTEGLT-CL  242 (288)
Q Consensus       184 -~~~-~~-~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~--~~~~~--~~~~~~~---~~---------~~~~v~-~~  242 (288)
                       ... +. ......+.|+|+|++++|+.+. ....|+.++.  .++..  ...+.+.   ..         .-.... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 22 1234568999999999766554 5678888554  33321  1233221   00         112234 45


Q ss_pred             EEc-------CCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          243 TIS-------ADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       243 ~~~-------~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      +..       +++.++++-....+|+.++ .+|...
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~  413 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS  413 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE
Confidence            554       4567777767788999998 566543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=0.00013  Score=66.50  Aligned_cols=198  Identities=9%  Similarity=0.053  Sum_probs=125.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      ...|.++...+ ++.+. .|+.++-|..++..+++......  .....|.++...+++. |..|+. +-|..|+..+++.
T Consensus       406 ~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          406 SNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSC
T ss_pred             CcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeE
Confidence            35688888876 45444 46666678889887765433221  1346788988887776 444555 4588899887665


Q ss_pred             eEEeccC-----CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec----cCCCeEEEEEcCCCCEEEEEeCC
Q 023018          142 KCTLEGP-----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG----HGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       142 ~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      .......     ...|.++...++|.+.+. +..+-+..|+..+++. ..+..    ....|.++...++|.+.+ ++..
T Consensus       482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~  558 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWL-ATGE  558 (781)
T ss_dssp             CEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEE-EETT
T ss_pred             EecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEE-EECC
Confidence            4433222     357999999888875554 4434477888766543 33321    235688998888877554 4556


Q ss_pred             CeEEEEeCCCCceeEEEcCCC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          213 ATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      |.|..||..+++. ..+.... .....|.++...++|.+.++ +..| |..|+..+++..
T Consensus       559 Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~  615 (781)
T 3v9f_A          559 GLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY  615 (781)
T ss_dssp             EEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE
T ss_pred             CceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE
Confidence            6558999876653 3333211 12345788888888876554 4444 777888766543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=0.00018  Score=57.84  Aligned_cols=187  Identities=13%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             CCEEEEEEcCCCCcEEEEEeC-CC-eEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 023018           65 DEVYSVACSPTDATLVATGGG-DD-KGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL  141 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~-dg-~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  141 (288)
                      .....+++.+ +++++++... ++ .|..++..+++....... .......++..+.+..+++-...+.|.++|...++.
T Consensus        72 ~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            4688999999 5556555433 22 466677667664332221 112234455555544444444688999999876431


Q ss_pred             -eEEec---------cCCCCEEEEEEcCCCCEEEE-ecCCCeEEEEECCc-ccE--EEEeeccCCCeEEEEEcCCCCEEE
Q 023018          142 -KCTLE---------GPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADR-AAY--LNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       142 -~~~~~---------~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                       +....         ..-.....+  +|+++.|++ -+..+.|..|++.. ++.  ...+.. ......+++.++|++++
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~v  227 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYG  227 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEE
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEE
Confidence             11110         111235556  777765544 45678999999864 321  112211 13456788999998777


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc---CCCCEEEEEeCC
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS---ADSTLALSGSKD  257 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d  257 (288)
                      +....+.|.++|.. ++...... ........++++|.   |++..|++.+..
T Consensus       228 a~~~~~~V~~~~~~-G~~~~~~~-~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          228 ATHIYNSVVRIAPD-RSTTIIAQ-AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             ECBTTCCEEEECTT-CCEEEEEC-GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EeCCCCeEEEECCC-CCEEEEee-cccccCCceEEEEecccCCCCEEEEECCC
Confidence            76677899999975 55432211 11123568899998   887777766554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.45  E-value=0.00068  Score=60.06  Aligned_cols=205  Identities=10%  Similarity=0.029  Sum_probs=131.7

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc------ccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCC
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPS  137 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~  137 (288)
                      ..+.+++|.+.++.++.+=...+.|+.+++........+..      .......+++...++.|. +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45788999986666666666678888888765433333322      233578999998766554 55567899999986


Q ss_pred             CCceeEE-eccCCCCEEEEEEcC-CCCEEEEecCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C
Q 023018          138 SGNLKCT-LEGPGGGVEWVSWHP-RGHIVLAGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D  212 (288)
Q Consensus       138 ~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d  212 (288)
                       ++.... +.........|+++| .|.++++-....  .|...++............-...+.|++.+..+.|+.+.. .
T Consensus       420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence             444333 333445689999999 555555543333  6777777543322223323446789999998888877764 5


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +.|..+++. |...+.+...  .......++... +.++++-...+.|...|..+|+....+
T Consensus       499 ~~I~~~~~d-G~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          499 RRIESSDLS-GANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TEEEEEETT-SCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CEEEEEeCC-CCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            789999985 4444444421  234456777765 455555556778999998888755443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.45  E-value=5e-06  Score=75.45  Aligned_cols=154  Identities=14%  Similarity=0.188  Sum_probs=97.2

Q ss_pred             cEEEEEEe-cCCCEEEEEeC-CC----eEEEEeCCCC-ceeE-EeccCCCCEEEEEEcCCCCEEEEecCC-----CeEEE
Q 023018          109 SVSSLAFS-MDGQLLASGGL-DG----LVQIWDPSSG-NLKC-TLEGPGGGVEWVSWHPRGHIVLAGSED-----STVWM  175 (288)
Q Consensus       109 ~i~~~~~~-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i  175 (288)
                      .+...+|+ |+|++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+|+++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998875542 33    5999999988 6321 111   113467899999888777654     36888


Q ss_pred             EECCcccE--EEEee-ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc-ee--EEEcCCCccccCeEEEEEcC
Q 023018          176 WNADRAAY--LNMFS-GHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGE-NI--HVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       176 ~d~~~~~~--~~~~~-~~~~~i~~~~~~p~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~~~~~~~~~~v~~~~~~~  246 (288)
                      +++.++..  ...+. ........+.|+|+|++|+..+.   ...|+++|+.++. ..  ..+...  ......++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeee
Confidence            88877532  22332 12234677899999999876653   3468889988752 22  333321  234455566554


Q ss_pred             CCCEEEEEeCC----CcEEEEEcCC
Q 023018          247 DSTLALSGSKD----GSVHMVNITT  267 (288)
Q Consensus       247 ~~~~l~~~~~d----g~i~iwd~~t  267 (288)
                      .+.+++....+    ..|..+++.+
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            44444554443    3677778765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.41  E-value=0.00041  Score=58.61  Aligned_cols=200  Identities=13%  Similarity=0.211  Sum_probs=114.3

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCC---Ce-EEEEEccCCee-eEeeccccCcEEEEEEec-CCCEEEEEeCCCeEEEEeC
Q 023018           63 HSDEVYSVACSPTDATLVATGGGD---DK-GFFWRINQGDW-ASEIQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~d---g~-i~iw~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~  136 (288)
                      .......+++++ ++.++++....   .. +...+...... ...+. .-.....++++| ++.++++-..++.|+.++.
T Consensus       180 ~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          180 NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            344578888988 45555544321   11 22233221111 01121 122345688999 6665555556789999998


Q ss_pred             CCCceeEE-ecc-CCCCEEEEEEcCCCCEE-EEecCCCeEEEEECC--cccE--EEEeecc---------------CCCe
Q 023018          137 SSGNLKCT-LEG-PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNAD--RAAY--LNMFSGH---------------GSSV  194 (288)
Q Consensus       137 ~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~i  194 (288)
                      .++..... +.. .......++|+|+++.| ++-...+.|+.++..  ++..  ...+.+.               -...
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence            87765222 221 22234579999999854 455567889998864  2221  1111111               1236


Q ss_pred             EEEEE---------cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---------------cccCeEEEEEc-CCCC
Q 023018          195 TCGDF---------TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTCLTIS-ADST  249 (288)
Q Consensus       195 ~~~~~---------~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~  249 (288)
                      ..+++         .+++.++++-...+.|+.++. +|. +.++.+...               .-.....|+++ +++.
T Consensus       338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~  415 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC  415 (433)
T ss_dssp             EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred             ccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence            77898         666666666666788999985 554 344432210               11346788888 5666


Q ss_pred             EEEEEeCCCcEEEEEcC
Q 023018          250 LALSGSKDGSVHMVNIT  266 (288)
Q Consensus       250 ~l~~~~~dg~i~iwd~~  266 (288)
                      ++++-...++|+.+++.
T Consensus       416 lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          416 FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEGGGTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEecC
Confidence            66666667788877753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=0.00012  Score=65.41  Aligned_cols=188  Identities=15%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             EEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeeeEeeccccC-cEEEEEEecCCCEEEEEe-CC-----CeEEEEeCCC
Q 023018           67 VYSVACSPTDATLVATGGG-DDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGG-LD-----GLVQIWDPSS  138 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~  138 (288)
                      ..++++.+ ++.+++.|+. +..+.+||..+.+....-.-+.. .-.+++..++++.++.|+ .+     ..+.+||..+
T Consensus       245 ~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          245 CPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            44566667 6778888874 45899999988765543221111 113455667888888887 34     5688999876


Q ss_pred             CceeEE-------ec-c-------C----------C---------------------------------------CCEEE
Q 023018          139 GNLKCT-------LE-G-------P----------G---------------------------------------GGVEW  154 (288)
Q Consensus       139 ~~~~~~-------~~-~-------~----------~---------------------------------------~~i~~  154 (288)
                      ++....       +. .       .          .                                       ..-.+
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence            643221       00 0       0          0                                       01122


Q ss_pred             EEEcC-CCCEEEEecCCC-----------eEEEEECCcccEEEEe--eccCCC-eEEEEEcCCCCEEEEEeCC-------
Q 023018          155 VSWHP-RGHIVLAGSEDS-----------TVWMWNADRAAYLNMF--SGHGSS-VTCGDFTPDGKTICTGSDD-------  212 (288)
Q Consensus       155 ~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~~-i~~~~~~p~~~~l~~~~~d-------  212 (288)
                      +.|.. +++++++|+.++           .|.+||..+..-....  ...... -.++...|+++.++.|+.+       
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            33322 567777777432           6778887765543322  112222 2345667899999998854       


Q ss_pred             ----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018          213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       213 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                          ..+.+||..+.+ ...+.........-....+.|++++++.|+.
T Consensus       484 ~~~~~~v~~ydp~t~~-W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCc-eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                468999987654 2333322212222334556789999999885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.31  E-value=0.0016  Score=57.65  Aligned_cols=202  Identities=9%  Similarity=-0.021  Sum_probs=123.6

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ..+.+++|.+.++.++++-...+.|+.+++........+...-.....+++.+.+..|+ +-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            34678888885666666666678888888775443333332224556888987555444 44567899999987554333


Q ss_pred             EeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 023018          144 TLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNP  220 (288)
Q Consensus       144 ~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~  220 (288)
                      .+...-.....|++.|....|+.+.  ..+.|...++............-.....|++++.+..|+.+.. .+.|..+++
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            3333445689999999644444443  2367877777543322222323456789999998788877754 467999998


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      ........+...   ......++...+ .+.++-...+.|...+..+|..
T Consensus       509 dG~~~~~~~~~~---l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          509 DGTGRRVLVEDK---IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             SSCCCEEEEECC---CCSSCCEEEETT-EEEEECTTSSCEEEEESSSCCE
T ss_pred             CCCceEEEeccC---CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCce
Confidence            644332222221   122334555543 3434444567888889888854

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.27  E-value=0.0012  Score=54.82  Aligned_cols=199  Identities=14%  Similarity=0.157  Sum_probs=131.1

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeEEeccC
Q 023018           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP  148 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~  148 (288)
                      .-.+| ..+.+|.-. ..++.|+|+++.+.++.+.-. ..|.-=.|-... .|+..+ +..|+-|++.. ..+.+.|..|
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence            44677 556666655 589999999999988887743 456556675443 455444 46899999864 3455555543


Q ss_pred             ----CCCEEEEEEcCCCCEEEEecC-------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCC---CEEEEEeC---
Q 023018          149 ----GGGVEWVSWHPRGHIVLAGSE-------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG---KTICTGSD---  211 (288)
Q Consensus       149 ----~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~---~~l~~~~~---  211 (288)
                          ...|..-..+++.++++..+-       .|.+.+|..+.+. -+.+.+|......+.+.-+.   ..++.+..   
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence                345777777888888775442       4778899986553 45566676555444433211   23444443   


Q ss_pred             CCeEEEEeCCCC---c------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          212 DATLRVWNPKSG---E------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       212 dg~i~i~d~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.++|.++...   .      .+..+...........++..++...+++..+.-|.|++||+.||.++..-
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            278999988432   1      11111122223455678899998888899999999999999999999865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.00036  Score=56.51  Aligned_cols=156  Identities=12%  Similarity=0.168  Sum_probs=104.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCC----CC---EEEEec-C--CCeEEEEEC--CcccEEEE
Q 023018          119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GH---IVLAGS-E--DSTVWMWNA--DRAAYLNM  186 (288)
Q Consensus       119 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~-~--dg~i~i~d~--~~~~~~~~  186 (288)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+..-|.    ++   ++++.. .  +++|.+|++  .++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            346666677889999999 8888888754  55777777662    22   233333 3  578999976  3333 444


Q ss_pred             eec------cC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC-------CCceeEEEcCCCccccCeEEEEEcCCC
Q 023018          187 FSG------HG-SSVTCGDF--TPD-GK-TICTGSDDATLRVWNPK-------SGENIHVIRGHPYHTEGLTCLTISADS  248 (288)
Q Consensus       187 ~~~------~~-~~i~~~~~--~p~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (288)
                      +..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++.+..    ...+-.|...+..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~~  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDEY  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCCC
Confidence            421      11 45566777  774 44 68888889999999883       2345666663    4578889999988


Q ss_pred             CEEEEEeCCCcEEEEEcC-----CCcEEEEe------cceEEEEE
Q 023018          249 TLALSGSKDGSVHMVNIT-----TGKVCCLN------FQYTCVAY  282 (288)
Q Consensus       249 ~~l~~~~~dg~i~iwd~~-----t~~~~~~~------~~~~~~~~  282 (288)
                      ..|+.+-++..|..++..     +++++...      ..+.++++
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence            899999998777777755     45666554      24566655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.22  E-value=6.4e-06  Score=73.98  Aligned_cols=180  Identities=11%  Similarity=0.018  Sum_probs=108.5

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCCC----CceeEEeccCCCCEEEEEEcCC-
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSS----GNLKCTLEGPGGGVEWVSWHPR-  160 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~-  160 (288)
                      +.|+..++.+......+.. ...+..++|.+.+..|+.+. ..+.|+.+++..    ......+.........|++.+. 
T Consensus       386 ~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             cceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            5677778776655444433 23456789998777666654 567899998875    2222222222223556788764 


Q ss_pred             CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCccccC
Q 023018          161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD--DATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       161 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      ++++++-...+.|.++++........+.........|++.|.+.+|+.+..  .+.|.++++.. .....+...  ....
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~--~l~~  541 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE--NIQW  541 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCS--SCSS
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeC--CCCC
Confidence            445555556789999998765443333333345678899997666665543  26788887753 333333211  2344


Q ss_pred             eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcE
Q 023018          239 LTCLTISADSTL-ALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       239 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~t~~~  270 (288)
                      ...|+|+|++.. +++-...+.|.++++.....
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~  574 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  574 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCC
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCce
Confidence            678999986544 44555667899999875433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.15  E-value=0.0006  Score=56.49  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=96.2

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCceeEEeccC----CCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc---------
Q 023018          116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---------  182 (288)
Q Consensus       116 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------  182 (288)
                      +.++..++++- ++.||..++......+.+...    -..+..+..+|+|++||..+. ..|.|..+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            34555555543 478888887754444444443    235788999999999999866 688888886321         


Q ss_pred             ---EEEEeec------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCc-eeEEEcCC------CccccCeEEEE
Q 023018          183 ---YLNMFSG------HGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGE-NIHVIRGH------PYHTEGLTCLT  243 (288)
Q Consensus       183 ---~~~~~~~------~~~~i~~~~~~p---~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~------~~~~~~v~~~~  243 (288)
                         ..+.+..      ...+|..+.|+|   .+..|++-..|+.|++||+.... ....+...      ......|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               1223332      256799999999   46689999999999999998532 11123211      11225688899


Q ss_pred             EcCCCCEEEEEe--CCCcEEEE
Q 023018          244 ISADSTLALSGS--KDGSVHMV  263 (288)
Q Consensus       244 ~~~~~~~l~~~~--~dg~i~iw  263 (288)
                      |.+++-.|.+.+  ..|.|+..
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            998776666644  66766654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.09  E-value=0.00024  Score=56.73  Aligned_cols=187  Identities=14%  Similarity=0.198  Sum_probs=101.8

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCe---eeEe--eccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGD---WASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN  140 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~---~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  140 (288)
                      ++.+++.|+.+     ..+.+||+.+.+   ....  +........++.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            55677777754     458899988765   3332  2211111122222  56666776643     368899988775


Q ss_pred             eeEE--eccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEEE--eeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          141 LKCT--LEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       141 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++..++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            4332  2222222233333  57777777654     4688999877643222  2111112222222  4566677765


Q ss_pred             C-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEE
Q 023018          212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVC  271 (288)
Q Consensus       212 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~  271 (288)
                      +     ..+.+||+.+.+- ..+...+........+.+  ++.+++.|+.+     ..|.+||+.+.+-.
T Consensus       216 ~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCCcccceEEEEeCCCCcE-EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            4     4689999987643 333322212222222232  56777777655     46889999886543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=0.0038  Score=53.34  Aligned_cols=205  Identities=11%  Similarity=0.045  Sum_probs=116.6

Q ss_pred             CEEEEEE-------cCCCCcEEEEEeCCC------eEEEEEccC-Ceee-----EeeccccCcEEEEEEecCCC-EEEEE
Q 023018           66 EVYSVAC-------SPTDATLVATGGGDD------KGFFWRINQ-GDWA-----SEIQGHKDSVSSLAFSMDGQ-LLASG  125 (288)
Q Consensus        66 ~v~~~~~-------~~~~~~~l~~~~~dg------~i~iw~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~-~l~~~  125 (288)
                      ....++|       ++.+..++++...++      .|.+.+... +...     ..+.... ....++++|++. ++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEE
Confidence            5889999       984433555544432      255554333 2221     2222222 335678899544 45555


Q ss_pred             eCCCeEEEEeCC-------CCce-----------eEE-ecc-CCCCEEEEEEcCCCCEEE-EecCCCeEEEEEC--Cccc
Q 023018          126 GLDGLVQIWDPS-------SGNL-----------KCT-LEG-PGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNA--DRAA  182 (288)
Q Consensus       126 ~~dg~i~i~d~~-------~~~~-----------~~~-~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~  182 (288)
                      ...+.|..+|+.       ++..           ... +.. .....+.++|+|+++.|+ +-+..+.|+.++.  ..+.
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~  345 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE  345 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence            678899999987       5543           112 222 234568999999999544 4456788998654  3332


Q ss_pred             E--EEEeecc---C------------CCeE-EEEEc-------CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC----
Q 023018          183 Y--LNMFSGH---G------------SSVT-CGDFT-------PDGKTICTGSDDATLRVWNPKSGENIHVIRGHP----  233 (288)
Q Consensus       183 ~--~~~~~~~---~------------~~i~-~~~~~-------p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  233 (288)
                      .  ...+-+.   .            .... .+...       +.+.++++=...+.|+.++. +|. +.++.+..    
T Consensus       346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~  423 (496)
T 3kya_A          346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTS  423 (496)
T ss_dssp             ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHH
T ss_pred             ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEeccccccc
Confidence            1  0122111   0            1234 44454       45555565566788999994 563 44553320    


Q ss_pred             -------c----------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEE
Q 023018          234 -------Y----------HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       234 -------~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~t~~~~~~  273 (288)
                             .          .-.....|+++++ +.++++=....+|+.+++.....+.-
T Consensus       424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence                   0          1134678999986 77766666778999999887655543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.07  E-value=0.00028  Score=56.47  Aligned_cols=188  Identities=21%  Similarity=0.294  Sum_probs=101.3

Q ss_pred             CCcEEEEEeCC-----CeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeE
Q 023018           76 DATLVATGGGD-----DKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLKC  143 (288)
Q Consensus        76 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~  143 (288)
                      ++.+++.|+.+     ..+.+||..+.+....-  .........+.+  ++..++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            55677777754     35888998877644332  211111122222  566777776543     57788988775433


Q ss_pred             E--eccCCCCEEEEEEcCCCCEEEEecCC-------CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          144 T--LEGPGGGVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       144 ~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      .  +.........+.+  ++++++.|+.+       ..+.+||+.+.+-..  .+.........+.+  ++..++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            2  2222222223333  56777777642       458899987764222  22211112222222  46666777654


Q ss_pred             -----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcEEE
Q 023018          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVCC  272 (288)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~~~  272 (288)
                           ..+.+||+.+.+- ..+...+........+.+  ++.+++.|+.++     .+.+||+.+.+-..
T Consensus       215 ~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             SSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCcccceEEEEeCCCCCE-eeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence                 3688999987643 333322211112222222  567777777553     58999998876443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.07  E-value=0.0029  Score=51.29  Aligned_cols=198  Identities=17%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      ...+.++.|.+  +..+++ +..|.|+. ....++.-....   .+...+..+.+.+++..++++ .+|.|.. ....++
T Consensus        79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred             CccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC
Confidence            34688899976  344444 44564443 222232211111   233457788887777666655 4554432 122333


Q ss_pred             eeEEe-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEEC--CcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          141 LKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA--DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       141 ~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      .-... ......+..+.+.+++.+++++...+..+-.|-  .+.+.+.  ......+..+.+.+++..+ .++.+|.+++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence            32222 334457899999998888877755443444442  2333332  2345678899999988655 4556788877


Q ss_pred             EeCCCCceeEEEcCC-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          218 WNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      .+...++....+... -.....+..+.+.+++.+++++ .+|.| ++....|+.-.
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~  283 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQ  283 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccE
Confidence            643324333222211 0122458889999877776665 46766 44555454333

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.05  E-value=0.00071  Score=54.16  Aligned_cols=187  Identities=16%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             CCcEEEEEeCC----CeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeE
Q 023018           76 DATLVATGGGD----DKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC  143 (288)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~  143 (288)
                      ++.+++.|+.+    ..+.+||+.+.+....-  .........+.+  +++.++.|+.+      ..+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            55677777754    56888998887654332  211111122222  56677777654      468899988875433


Q ss_pred             E--eccCCCCEEEEEEcCCCCEEEEecC---------CCeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          144 T--LEGPGGGVEWVSWHPRGHIVLAGSE---------DSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       144 ~--~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      .  +.........+.+  ++++++.|+.         -..+.+||+.+.+-..  .+.........+.+  +++.++.|+
T Consensus       133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeC
Confidence            2  2212222222333  5677777763         3458899988764222  22111111222222  456666665


Q ss_pred             CC-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEE
Q 023018          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVC  271 (288)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~  271 (288)
                      .+     ..+.+||+.+.+ ...+...+........+.+  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       209 ~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             EETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            43     358899998764 3333322212222233333  66777888754     56899999887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.00  E-value=0.0042  Score=50.77  Aligned_cols=192  Identities=11%  Similarity=0.109  Sum_probs=112.5

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEE------------eCCCeEEEEEccCC-eeeEee--cc-----ccCcEEEEEEec
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATG------------GGDDKGFFWRINQG-DWASEI--QG-----HKDSVSSLAFSM  117 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~-~~~~~~--~~-----~~~~i~~~~~~~  117 (288)
                      +.+.+-....-.++..| ++..++++            ..+|.|.++|+.+. .....+  .+     .......+.+.+
T Consensus        43 ~~i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             EECTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred             EEeCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE
Confidence            33444223345566677 55554444            26899999998742 111222  21     223567777766


Q ss_pred             --CCC-EEEEEe-C--CCeEEEEeCCCCc-e---eEEecc-CCCCEEEEEEcCCCCEEEEec-----------------C
Q 023018          118 --DGQ-LLASGG-L--DGLVQIWDPSSGN-L---KCTLEG-PGGGVEWVSWHPRGHIVLAGS-----------------E  169 (288)
Q Consensus       118 --~~~-~l~~~~-~--dg~i~i~d~~~~~-~---~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~  169 (288)
                        ++. +|+++. .  +.+|.+|++.... .   +..+.+ .-...+.+.+.++|.++++..                 .
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence              354 455553 2  4678887765432 2   222332 234688999999998777754                 1


Q ss_pred             CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cce--eEEEcCCCccccCeEEEEEc
Q 023018          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKS-GEN--IHVIRGHPYHTEGLTCLTIS  245 (288)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~v~~~~~~  245 (288)
                      .|.|+.++..  + +..+...-...+.++|+|+++.|+.+. ..+.|..|++.. +..  .+.+.    .....-.+++.
T Consensus       202 ~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~g~PDGi~vD  274 (355)
T 3sre_A          202 WSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FDTLVDNISVD  274 (355)
T ss_dssp             CEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CSSEEEEEEEC
T ss_pred             ccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CCCCCceEEEe
Confidence            2556666653  2 222222334578999999999887765 567899999863 322  22332    23556788999


Q ss_pred             C-CCCEEEEEeCC
Q 023018          246 A-DSTLALSGSKD  257 (288)
Q Consensus       246 ~-~~~~l~~~~~d  257 (288)
                      + +|++.+++..+
T Consensus       275 ~e~G~lwva~~~~  287 (355)
T 3sre_A          275 PVTGDLWVGCHPN  287 (355)
T ss_dssp             TTTCCEEEEEESC
T ss_pred             CCCCcEEEEecCC
Confidence            9 59887766533

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.92  E-value=0.0012  Score=52.67  Aligned_cols=188  Identities=18%  Similarity=0.261  Sum_probs=100.9

Q ss_pred             CCcEEEEEe-CC-----CeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc--
Q 023018           76 DATLVATGG-GD-----DKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN--  140 (288)
Q Consensus        76 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~--  140 (288)
                      ++.+++.|+ .+     ..+.+||+.+.+....-  .........+  ..++..++.|+.+     ..+.+||+.+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 32     36888998877644322  2111111222  2356677777654     468899988776  


Q ss_pred             -eeEE--eccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          141 -LKCT--LEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       141 -~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                       ....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-  +..+.........+.+  ++..++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             3332  2222222233333  56777777643     3688999877542  2222211112222222  566667766


Q ss_pred             CC-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEE
Q 023018          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVCC  272 (288)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~~  272 (288)
                      .+     ..+.+||+.+.+- ..+...+........+.+  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            54     4588999887643 333322211122222222  56777777654     469999998876443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.89  E-value=0.0067  Score=49.66  Aligned_cols=217  Identities=11%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEeec---cccCcEEEEEEecC---CCEEEEEeC-C-
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQ---GHKDSVSSLAFSMD---GQLLASGGL-D-  128 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~---~~~~~i~~~~~~~~---~~~l~~~~~-d-  128 (288)
                      .+...-..-..++|.| ++.++++ ...|.|++++  +++.  +..+.   ........|+|+|+   +..|+++.. . 
T Consensus        25 ~va~~l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~  100 (352)
T 2ism_A           25 EVVGGLEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             EEECCCSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred             EEECCCCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence            3333334567999999 6666554 5569999988  4432  11111   12346789999998   555554433 2 


Q ss_pred             ----CeEEEEeCCCCc-----ee-EEec---cCCCCEEEEEEcCCCCEEEEecC-------------CCeEEEEECCcc-
Q 023018          129 ----GLVQIWDPSSGN-----LK-CTLE---GPGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRA-  181 (288)
Q Consensus       129 ----g~i~i~d~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-  181 (288)
                          +.|..|+...+.     .+ ..+.   ........++|.|+|.++++.+.             .|.|.-++.... 
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence                567778776432     11 1133   11123468999999976666432             256666665430 


Q ss_pred             -----------cEEEEeeccCCCeEEEEEcC-CCCEEEEEeCCCe--------EEEEeCCCCc-----------------
Q 023018          182 -----------AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT--------LRVWNPKSGE-----------------  224 (288)
Q Consensus       182 -----------~~~~~~~~~~~~i~~~~~~p-~~~~l~~~~~dg~--------i~i~d~~~~~-----------------  224 (288)
                                 .....+..--.....++|+| ++.++++-.....        |.+..  .+.                 
T Consensus       181 p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~  258 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYR  258 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSC
T ss_pred             CCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCc
Confidence                       01111111112356789999 5655444332222        33332  221                 


Q ss_pred             -eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-------EEE---ecceEEEEEeecc
Q 023018          225 -NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-------CCL---NFQYTCVAYDLDF  286 (288)
Q Consensus       225 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~-------~~~---~~~~~~~~~~~df  286 (288)
                       ++..+.    .......++| .+|.++++.-..+.|...++.....       ...   ...+..+++.||-
T Consensus       259 ~p~~~~~----~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  326 (352)
T 2ism_A          259 DPLYFWP----QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG  326 (352)
T ss_dssp             CCSEECT----TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS
T ss_pred             CCeEecC----CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC
Confidence             111111    1234566777 4677766666677888888764431       111   1456777777763

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.87  E-value=0.0025  Score=50.95  Aligned_cols=186  Identities=11%  Similarity=0.145  Sum_probs=99.5

Q ss_pred             CcEEEEEeC--CCeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCC----CeEEEEeCCCCceeEEe--c
Q 023018           77 ATLVATGGG--DDKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD----GLVQIWDPSSGNLKCTL--E  146 (288)
Q Consensus        77 ~~~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~--~  146 (288)
                      +.+++.|+.  ...+.+||..+.+....  +.........+.  .++..++.|+.+    ..+.+||+.+.+....-  .
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            445666654  35688999888765432  211111112222  256677777654    67889999887543332  2


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeC-------
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSD-------  211 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~-------  211 (288)
                      ........+.+  ++++++.|+.+      ..+.+||+.+.+-..  .+.........+.+  ++..++.|+.       
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence            22222233333  56777887754      468999988764322  22111111222222  4555666653       


Q ss_pred             --CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEE
Q 023018          212 --DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVC  271 (288)
Q Consensus       212 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~  271 (288)
                        -..+.+||+.+.+ ...+...+.....-..+.+  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       166 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          166 RVLNSCEVYDPATET-WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             EECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             cccceEEEeCCCCCe-EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence              3458899998764 3333322211122222222  56677776643     46899999886533

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.84  E-value=0.0039  Score=46.91  Aligned_cols=175  Identities=15%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCe------eeEeecc-ccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee------
Q 023018           76 DATLVATGGGDDKGFFWRINQGD------WASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------  142 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------  142 (288)
                      ...+|++...| +++.=......      ...++-. --..+.+++|+|++.+.++  .+|.++-.+..+....      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34566666776 66655444433      1112211 0236779999999986666  6788777776552211      


Q ss_pred             EEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE-------EEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          143 CTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       143 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ..+- ..-....++.|.|+|.+.++  .||.|+-++-.+...       ...-..--..+..|.+.|+|.+.++.  ++.
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~  155 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ  155 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence            1111 01112478999999988888  559998887543211       11111112467999999999877666  777


Q ss_pred             EEEEeCCCCc------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 023018          215 LRVWNPKSGE------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH  261 (288)
Q Consensus       215 i~i~d~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  261 (288)
                      ++-....++.      ....+...  .-...+.+.|.+++.+.++.  +|.++
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQG--GWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESS--SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccC--CcceEEEEEECCCCcEEEEe--CCeEE
Confidence            6544333221      11222211  12234556788888776665  66444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.80  E-value=0.0027  Score=52.67  Aligned_cols=140  Identities=16%  Similarity=0.203  Sum_probs=93.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccc----cCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-----------
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----------  140 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------  140 (288)
                      ++.-++.+- ++.||.-++.....-+.+...    -..|..+..+|+|++||..+ +..|.|..+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            333443433 267777777644433333321    22577899999999999886 4578888877332           


Q ss_pred             -eeEEecc------CCCCEEEEEEcC---CCCEEEEecCCCeEEEEECCcc--cEEEEee---------ccCCCeEEEEE
Q 023018          141 -LKCTLEG------PGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRA--AYLNMFS---------GHGSSVTCGDF  199 (288)
Q Consensus       141 -~~~~~~~------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~i~~~~~  199 (288)
                       ..+.+..      ...+|..+.|||   .+..|++-..|+.|++||+...  ++. .++         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             1112221      256799999999   4568999999999999999752  122 221         12256889999


Q ss_pred             cCCCCEEEEEe--CCCeEEEE
Q 023018          200 TPDGKTICTGS--DDATLRVW  218 (288)
Q Consensus       200 ~p~~~~l~~~~--~dg~i~i~  218 (288)
                      .+++-.|+..+  ..|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            99888888866  78888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.77  E-value=0.0017  Score=52.25  Aligned_cols=189  Identities=13%  Similarity=0.117  Sum_probs=98.4

Q ss_pred             CCcEEEEEeC-----C------CeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC--------CeEEEE
Q 023018           76 DATLVATGGG-----D------DKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD--------GLVQIW  134 (288)
Q Consensus        76 ~~~~l~~~~~-----d------g~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~  134 (288)
                      ++.+++.|+.     .      ..+.+||..+.+....-  .........+.+  ++..++.|+.+        ..+.+|
T Consensus        45 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           45 ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEE
Confidence            5567777763     1      12778888876653321  111111112222  55666666632        458899


Q ss_pred             eCCCCceeEE--eccCCCCEEEEEEcCCCCEEEEecC-C-----CeEEEEECCcccEE--EEeeccCCCeEEEEEcCCCC
Q 023018          135 DPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSE-D-----STVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       135 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~p~~~  204 (288)
                      |+.+.+....  +.........+.  .++++++.|+. +     ..+.+||+.+.+-.  ..+........++.+  +++
T Consensus       123 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  198 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGR  198 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCE
Confidence            9887753322  222222222333  35667777775 2     46899998775422  222111111222222  566


Q ss_pred             EEEEEeCCC-----eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEc
Q 023018          205 TICTGSDDA-----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVNI  265 (288)
Q Consensus       205 ~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~  265 (288)
                      .++.|+.++     .+.+||+.+.+ ...+...+........+.+  ++.+++.|+.+              ..+.+||+
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~  275 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE  275 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred             EEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC
Confidence            777777654     58899998764 3333322212222222222  56777777653              24788999


Q ss_pred             CCCcEEEE
Q 023018          266 TTGKVCCL  273 (288)
Q Consensus       266 ~t~~~~~~  273 (288)
                      .+.+-...
T Consensus       276 ~~~~W~~~  283 (315)
T 4asc_A          276 EEKKWEGV  283 (315)
T ss_dssp             TTTEEEEE
T ss_pred             CCChhhhh
Confidence            88754443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.00024  Score=57.66  Aligned_cols=191  Identities=13%  Similarity=0.060  Sum_probs=111.1

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccc-cCcEEEEEEe--cCCCEEEEE--eCCCeEEEEeCCCCceeEEecc----C
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFS--MDGQLLASG--GLDGLVQIWDPSSGNLKCTLEG----P  148 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~----~  148 (288)
                      .+++.++.||.|+-.|..+|+.+-.+... ..++....-.  +.+..++.+  +.||.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999988888743 1232221110  112234433  5899999999988855544332    1


Q ss_pred             CCCEEE---EEE-c----CCCCEEEEecCCCeEEEEECCcccEEEEeeccCC--C-----eEEEEEc-----CCCCEEEE
Q 023018          149 GGGVEW---VSW-H----PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--S-----VTCGDFT-----PDGKTICT  208 (288)
Q Consensus       149 ~~~i~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~-----i~~~~~~-----p~~~~l~~  208 (288)
                      .+++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+.....  .     ..|....     ..+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            222321   000 0    1356889999999999999999999988864321  0     1111111     12456777


Q ss_pred             EeCCCeEEEEeCCCCceeEEEc-----CCCccccCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          209 GSDDATLRVWNPKSGENIHVIR-----GHPYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      +..+..+.+.+ ++|+ +..+.     ... ....+. .-..+.++.+ +.++.||.|+.+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~-~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNV-LDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCT-TTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccc-cccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777777777 4553 21111     000 000000 0001124555 457889999999999999876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.74  E-value=0.0015  Score=52.21  Aligned_cols=187  Identities=19%  Similarity=0.298  Sum_probs=97.6

Q ss_pred             CcEEEEEeCC----CeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeEE-
Q 023018           77 ATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKCT-  144 (288)
Q Consensus        77 ~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-  144 (288)
                      +.+++.|+.+    ..+.+||+.+.+....  +...... .+++. -++..++.|+.+     ..+.+||..+.+.... 
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            4456666643    3588889887764432  1111111 12222 256667777644     3588899887754332 


Q ss_pred             -eccCCCCEEEEEEcCCCCEEEEecCCC-----eEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeCC----
Q 023018          145 -LEGPGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD----  212 (288)
Q Consensus       145 -~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~d----  212 (288)
                       +.........+.+  ++.+++.|+.++     .+.+||+.+.+-..  .+.........+.+  ++..++.|+.+    
T Consensus        94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence             2222222233333  567777777553     57888987654222  22211111222222  45566666532    


Q ss_pred             ---CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEE
Q 023018          213 ---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVCC  272 (288)
Q Consensus       213 ---g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~~  272 (288)
                         ..+.+||+.+.+- ..+...+........+.+  ++.+++.|+.+     ..+.+||+.+++-..
T Consensus       170 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          170 QCLSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             EECCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             ccccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence               3588999987643 333322211122222222  56777777654     369999998875443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.66  E-value=0.0012  Score=52.85  Aligned_cols=188  Identities=14%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CCcEEEEEeC----C-----CeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCC-----CeEEEEeCCCC
Q 023018           76 DATLVATGGG----D-----DKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSG  139 (288)
Q Consensus        76 ~~~~l~~~~~----d-----g~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  139 (288)
                      ++.+++.|+.    +     ..+.+||+.+.+....-  .........+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4566666665    2     35888898876644332  111111122222  56666666533     46888998876


Q ss_pred             ceeEE--eccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          140 NLKCT--LEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       140 ~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +....  +.........+.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+.........+.+  ++..++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            54332  2222222233333  56777777654     458899987654222  11111112223333  556667776


Q ss_pred             CC-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEE
Q 023018          211 DD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVCC  272 (288)
Q Consensus       211 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~~  272 (288)
                      .+     ..+.+||+.+.+ ...+...+........+.+  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       224 ~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             CCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            54     468999998754 2333322211122222222  56777777643     468899998875443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.65  E-value=0.0036  Score=50.13  Aligned_cols=188  Identities=16%  Similarity=0.225  Sum_probs=99.5

Q ss_pred             CCcEEEEEeCC----CeEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeC----C-----CeEEEEeCCCCc
Q 023018           76 DATLVATGGGD----DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL----D-----GLVQIWDPSSGN  140 (288)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~  140 (288)
                      ++.+++.|+..    ..+.+||..+.+....  +....... +++. .++.+++.|+.    +     ..+.+||+.+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            55677777632    3688999887765433  11111111 2222 25666666664    2     468889988775


Q ss_pred             eeEE--eccCCCCEEEEEEcCCCCEEEEecCC-----CeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          141 LKCT--LEGPGGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       141 ~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ....  +.........+.+  ++++++.|+.+     ..+.+||+.+.+-..  .+.........+.+  ++..++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            3332  2222222333333  56777777643     468899987754222  12111112222223  4566666665


Q ss_pred             C-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEE
Q 023018          212 D-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVCC  272 (288)
Q Consensus       212 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~~  272 (288)
                      +     ..+.+||+.+.+- ..+...+.....-..+.+  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            4     4588999876542 233222211222222333  56777777654     569999998865443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.62  E-value=0.002  Score=61.21  Aligned_cols=199  Identities=14%  Similarity=0.151  Sum_probs=122.6

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEeccC
Q 023018           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEGP  148 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~  148 (288)
                      .-.+| ..+++|.-. ..++.|+++.+.+.+..+.- ..+|.-=.|-... .|+..+ +..|+.|++... .+.+.|..|
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hccCC-CcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            34677 556666654 58899999999887777763 4466666675443 344433 467999999642 333334333


Q ss_pred             ----CCCEEEEEEcCCCCEEEEec-------CCCeEEEEECCcccEEEEeeccCCCeEEEEEc--CCCC-EEEEEeC---
Q 023018          149 ----GGGVEWVSWHPRGHIVLAGS-------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGK-TICTGSD---  211 (288)
Q Consensus       149 ----~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--p~~~-~l~~~~~---  211 (288)
                          ...|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|.+....+...  +... .++.+..   
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                34566677788888777543       34788999886543 34455565544333332  1112 2222222   


Q ss_pred             CCeEEEEeCCCC---cee------EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          212 DATLRVWNPKSG---ENI------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       212 dg~i~i~d~~~~---~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.++|.++...   .+.      ..+...........++..++...+++..+.-|.|++||+.||.++..-
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            368888887432   111      111111122344567888887778888899999999999999887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.61  E-value=0.0048  Score=49.58  Aligned_cols=189  Identities=15%  Similarity=0.225  Sum_probs=97.3

Q ss_pred             CCcEEEEEeC----CC-------eEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeCC-------CeEEEEe
Q 023018           76 DATLVATGGG----DD-------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-------GLVQIWD  135 (288)
Q Consensus        76 ~~~~l~~~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d  135 (288)
                      ++.+++.|+.    ++       .+.+||..+.+....  +.........+.+  ++..++.|+.+       ..+.+||
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd  133 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYD  133 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEe
Confidence            5667777773    12       177788877665432  2211111122222  56666777643       3578889


Q ss_pred             CCCCceeEEeccC--CCCEEEEEEcCCCCEEEEecC------CCeEEEEECCcccEEE--EeeccCCCeEEEEEcCCCCE
Q 023018          136 PSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       136 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~p~~~~  205 (288)
                      +.+.+....-..+  ......+.  .++++++.|+.      -..+.+||+.+.+-..  .+.........+.+  ++..
T Consensus       134 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i  209 (318)
T 2woz_A          134 PVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKI  209 (318)
T ss_dssp             TTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEE
Confidence            8877544322111  11122222  35677777764      2458999988764222  22111111222222  4566


Q ss_pred             EEEEeCC-----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC--------------CcEEEEEcC
Q 023018          206 ICTGSDD-----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD--------------GSVHMVNIT  266 (288)
Q Consensus       206 l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~  266 (288)
                      ++.|+.+     ..+.+||+.+.+- ..+...+........+.  -++.+++.|+.+              ..+.+||+.
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  286 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD  286 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred             EEEcCcCCCCccceEEEEECCCCeE-EECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence            6777643     3577899887642 33332221111222222  256677776643              468899999


Q ss_pred             CCcEEEE
Q 023018          267 TGKVCCL  273 (288)
Q Consensus       267 t~~~~~~  273 (288)
                      +.+-...
T Consensus       287 ~~~W~~~  293 (318)
T 2woz_A          287 KKEWAGM  293 (318)
T ss_dssp             TTEEEEE
T ss_pred             CCEehhh
Confidence            8765444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.57  E-value=0.0029  Score=51.75  Aligned_cols=193  Identities=15%  Similarity=0.165  Sum_probs=96.0

Q ss_pred             CCcEEEEEeC-C---------CeEEEEEccCCeeeEeeccc---cCcEEEEEEecCCCEEEEEeCC--------------
Q 023018           76 DATLVATGGG-D---------DKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGLD--------------  128 (288)
Q Consensus        76 ~~~~l~~~~~-d---------g~i~iw~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d--------------  128 (288)
                      ++.+++.|+. +         ..+.+||+.+.+....-...   .....++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            4566666665 2         46889998887654432211   11222222  467777787754              


Q ss_pred             -------------------------CeEEEEeCCCCceeEEeccC--CCCEEEEEEcCCCCEEEEecC------CCeEEE
Q 023018          129 -------------------------GLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSE------DSTVWM  175 (288)
Q Consensus       129 -------------------------g~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~------dg~i~i  175 (288)
                                               ..+.+||+.+.+....-..+  ...-.+++.. ++++++.|+.      ...+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~  221 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE  221 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence                                     57899999887544332211  1110222222 5667777764      345777


Q ss_pred             EEC--Cccc--EEEEeeccCCCeEEEEEcCCCCEEEEEeCC----------------------CeEEEEeCCCCceeEEE
Q 023018          176 WNA--DRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDD----------------------ATLRVWNPKSGENIHVI  229 (288)
Q Consensus       176 ~d~--~~~~--~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~  229 (288)
                      ||+  .+.+  .+..+..........+...++..++.|+.+                      ..+.+||+.+.+-. .+
T Consensus       222 ~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~-~~  300 (357)
T 2uvk_A          222 LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD-KS  300 (357)
T ss_dssp             EECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE-EE
T ss_pred             EEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee-eC
Confidence            876  3332  222221111111111122245666666632                      24778998865432 22


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCC------cEEEEEcCCCcEEEEe
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDG------SVHMVNITTGKVCCLN  274 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~t~~~~~~~  274 (288)
                      ...+.....-.++  ..++++++.|+.++      .|.++++.+++.+...
T Consensus       301 ~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          301 GELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             CCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            2211111222222  23677888887543      4777799998877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.56  E-value=0.019  Score=54.47  Aligned_cols=174  Identities=17%  Similarity=0.168  Sum_probs=101.5

Q ss_pred             eEEEEEccCCeeeEeecc-ccCcEEEEEEe---cC-CCEEEEEe----------CCCeEEEEeCCCCceeEEec-cCCCC
Q 023018           88 KGFFWRINQGDWASEIQG-HKDSVSSLAFS---MD-GQLLASGG----------LDGLVQIWDPSSGNLKCTLE-GPGGG  151 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~---~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~-~~~~~  151 (288)
                      .|++.|..+.+.+..+.- ....+.+++..   .+ ..+|++|+          ..|.|++|++..++...... ...++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            366666666665544432 22344555432   22 35888886          35889999987554322221 24567


Q ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE--eCCCCceeEEE
Q 023018          152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW--NPKSGENIHVI  229 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~--d~~~~~~~~~~  229 (288)
                      +++++-- +| +|++|-. ..|++|++...+.+..-..+-..+..+.....++++++|..-..|.++  +...++ +..+
T Consensus       888 v~al~~~-~g-~Lla~ig-~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~-L~~~  963 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASIN-STVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN-FEEI  963 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEET-TEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE-EEEE
T ss_pred             CEEEeee-CC-EEEEEcC-CEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe-EEEE
Confidence            8888754 35 4444443 789999997665433111111113222333357899999877766654  444333 3333


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .. ......++++.+-.++ .++.+..+|.|.++....
T Consensus       964 a~-D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 AR-DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EE-CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             Ee-ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            32 2256678888886554 667788999999987754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.53  E-value=0.021  Score=46.69  Aligned_cols=153  Identities=14%  Similarity=0.082  Sum_probs=91.4

Q ss_pred             cEEEEEEecCCCEEEEE------------eCCCeEEEEeCCCC--ceeE-Eecc-----CCCCEEEEEEcC--CCC-EEE
Q 023018          109 SVSSLAFSMDGQLLASG------------GLDGLVQIWDPSSG--NLKC-TLEG-----PGGGVEWVSWHP--RGH-IVL  165 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~~--~~~~-~~~~-----~~~~i~~~~~~~--~~~-~l~  165 (288)
                      ..-++...|+|..++++            ..+|.|.++|+.+.  +... .+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34567778877554444            16899999998742  2211 1222     123577777765  343 344


Q ss_pred             Ee-cC--CCeEEEEECCcc----cEEEEeecc-CCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEeC
Q 023018          166 AG-SE--DSTVWMWNADRA----AYLNMFSGH-GSSVTCGDFTPDGKTICTGS-----------------DDATLRVWNP  220 (288)
Q Consensus       166 ~~-~~--dg~i~i~d~~~~----~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~-----------------~dg~i~i~d~  220 (288)
                      ++ ..  +.+|.+|++...    ..+..+.+. -...+.+.+.++|.+.++..                 ..|.|+-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            43 22  467778776542    122333321 23578999999998777654                 1255666665


Q ss_pred             CCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 023018          221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITT  267 (288)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~t  267 (288)
                      .  +. ..+..   .-...+.++|+||++.|+.+. ..+.|+.|++..
T Consensus       211 ~--~~-~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 N--DV-RVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             T--CC-EEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             C--eE-EEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            3  22 22221   335578999999998777664 578999999863

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.48  E-value=0.0083  Score=48.12  Aligned_cols=184  Identities=11%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeC-----C------CeEEEEeCCCCceeEE--
Q 023018           79 LVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGL-----D------GLVQIWDPSSGNLKCT--  144 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~--  144 (288)
                      +++.|+  ..+.+||..+.+.... +..............++..++.|+.     .      ..+.+||..+++....  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            455555  5799999998876431 2111122223333456777777773     1      1277889887754322  


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCC--------CeEEEEECCcccE--EEEeeccCCCeEEEEEcCCCCEEEEEeC-C-
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAY--LNMFSGHGSSVTCGDFTPDGKTICTGSD-D-  212 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d-  212 (288)
                      +.........+.+  ++.+++.|+.+        ..+.+||+.+.+-  +..+.........+.  -++..++.|+. + 
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence            1111111222222  56677777732        4589999887542  222211111122222  24556666665 2 


Q ss_pred             ----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcEE
Q 023018          213 ----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKVC  271 (288)
Q Consensus       213 ----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~~~  271 (288)
                          ..+.+||+.+.+- ..+...+.....-..+.+  ++.+++.|+.++     .+.+||+.+.+-.
T Consensus       161 ~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             SCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence                3689999887542 233322111111222222  567777777654     5889999886433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.46  E-value=0.01  Score=53.38  Aligned_cols=195  Identities=13%  Similarity=0.160  Sum_probs=105.9

Q ss_pred             CCcEEEEEeCC----CeEEEEEccCCeeeEee-c------cccCcEEEEEEec-CCCEEEEEeCC------CeEEEEeCC
Q 023018           76 DATLVATGGGD----DKGFFWRINQGDWASEI-Q------GHKDSVSSLAFSM-DGQLLASGGLD------GLVQIWDPS  137 (288)
Q Consensus        76 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~~-~------~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~  137 (288)
                      ++.+++.|+.+    ..+.+||..+.+....- .      .....-.+++..+ ++..++.|+.+      ..+.+||+.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            56677777753    45888998877654433 1      1111112333333 66677777643      357889988


Q ss_pred             CCceeEE--eccCCCCEEEEEEcCCCCEEEEecCCC--eEEEEECCcccEEEEe-----eccCCCeEEEEEcCC-CCEEE
Q 023018          138 SGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPD-GKTIC  207 (288)
Q Consensus       138 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~p~-~~~l~  207 (288)
                      +.+....  +........ ++.-.++.+++.|+.++  .+.+||+.+..-...-     ........++.+... +..++
T Consensus       477 t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            7654332  222222222 23323788888887654  6999999876432211     111122233455554 55666


Q ss_pred             EEeC--C-----CeEEEEeCCCCce-----eEEEcCCCccccCeEEEEEcCCCCEEEEEeC--------CCcEEEEEcCC
Q 023018          208 TGSD--D-----ATLRVWNPKSGEN-----IHVIRGHPYHTEGLTCLTISADSTLALSGSK--------DGSVHMVNITT  267 (288)
Q Consensus       208 ~~~~--d-----g~i~i~d~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~iwd~~t  267 (288)
                      .|+.  +     ..+.+||+.+..-     ...+...+.....-.+++...++.+++.|+.        ...|.+||+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            7765  2     3588999987761     2333221101111122333333677777764        34699999998


Q ss_pred             CcEE
Q 023018          268 GKVC  271 (288)
Q Consensus       268 ~~~~  271 (288)
                      .+-.
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.40  E-value=0.0079  Score=45.28  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee------Eeec--cccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA------SEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ..++.++|+| ++.+.++  .+|.++-.+..+....      ..+-  +-. ...++.|.|+|.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999 7777766  5687666555442111      1110  111 1367889999987777  5699988876


Q ss_pred             CCCceeE------Ee-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCccc------EEEEee-ccCCCeEEEEEcCC
Q 023018          137 SSGNLKC------TL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------YLNMFS-GHGSSVTCGDFTPD  202 (288)
Q Consensus       137 ~~~~~~~------~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-~~~~~i~~~~~~p~  202 (288)
                      .+.....      .+ ...-..+..|.+.|+|.+.++.  ++.++-....+..      ....+- ..-...+-+.|.|+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            4322111      11 1122458999999999888777  6776544332111      011111 12223445668888


Q ss_pred             CCEEEEEeCCCeEE
Q 023018          203 GKTICTGSDDATLR  216 (288)
Q Consensus       203 ~~~l~~~~~dg~i~  216 (288)
                      +...++.  +|.++
T Consensus       193 G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          193 GTLFGVQ--GGKFY  204 (236)
T ss_dssp             SCEEEEE--TTEEE
T ss_pred             CcEEEEe--CCeEE
Confidence            8776665  66443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.37  E-value=0.041  Score=44.94  Aligned_cols=185  Identities=16%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             CCCEEEEEEcCC---CCcEEEEEeCC-----CeEEEEEccCCe-----ee-Eeec---cccCcEEEEEEecCCCEEEEEe
Q 023018           64 SDEVYSVACSPT---DATLVATGGGD-----DKGFFWRINQGD-----WA-SEIQ---GHKDSVSSLAFSMDGQLLASGG  126 (288)
Q Consensus        64 ~~~v~~~~~~~~---~~~~l~~~~~d-----g~i~iw~~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~~l~~~~  126 (288)
                      ......|+|+|+   ++.+.++-...     +.|..++.....     .+ ..+.   ........++|.|+|.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            346789999994   35555444432     567788876431     11 1132   1111235799999997555533


Q ss_pred             C-------------CCeEEEEeCCCC------------ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCCe--------
Q 023018          127 L-------------DGLVQIWDPSSG------------NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDST--------  172 (288)
Q Consensus       127 ~-------------dg~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------  172 (288)
                      .             .|.|.-++....            .....+.........++|+| .+.++++-.....        
T Consensus       154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~de  233 (352)
T 2ism_A          154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE  233 (352)
T ss_dssp             CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCE
T ss_pred             CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeE
Confidence            2             256666665420            01111111112367789999 6665555433332        


Q ss_pred             EEEEECCccc------------------EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eEE
Q 023018          173 VWMWNADRAA------------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN------IHV  228 (288)
Q Consensus       173 i~i~d~~~~~------------------~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~------~~~  228 (288)
                      |.+.  ..+.                  ++..+. +......++| .+|..+++....+.|...++.....      ...
T Consensus       234 i~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~  309 (352)
T 2ism_A          234 VNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVET  309 (352)
T ss_dssp             EEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEe--ccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence            3332  2221                  222222 2234566777 3565555555566777777653321      112


Q ss_pred             EcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          229 IRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      +..   ....+..+++.|+|.++++..
T Consensus       310 ~~~---~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          310 ALS---GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEE---SSCCEEEEEECTTSCEEEEEC
T ss_pred             ecc---cCCCeeEEEECCCCcEEEEEe
Confidence            211   235688999999998776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.21  E-value=0.027  Score=45.17  Aligned_cols=184  Identities=13%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             EEEEEeCCCeEEEEEccCCeeeEe-eccccCcEEEEEEecCCCEEEEEeC----CC-------eEEEEeCCCCceeEE--
Q 023018           79 LVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGL----DG-------LVQIWDPSSGNLKCT--  144 (288)
Q Consensus        79 ~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--  144 (288)
                      +++.|+.  .+.+||..+.+.... +..............++..++.|+.    ++       .+.+||..+.+....  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4445553  488999988776542 1111112222233456777777773    12       277888877654332  


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCC-------CeEEEEECCcccEEEE--eeccCCCeEEEEEcCCCCEEEEEeC----
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSED-------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD----  211 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~----  211 (288)
                      +.........+.+  ++.+++.|+.+       ..+.+||+.+.+-...  +.........+.  .++..++.|+.    
T Consensus        96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDK  171 (318)
T ss_dssp             BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSS
T ss_pred             CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCC
Confidence            2222222222333  56777777753       3588889877543221  111111111222  25556666653    


Q ss_pred             --CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEE
Q 023018          212 --DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVC  271 (288)
Q Consensus       212 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~  271 (288)
                        -..+.+||+.+.+- ..+...+........+.+  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       172 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             CBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CccceEEEEcCCCCEE-EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence              23589999987643 333322211111222222  56777777643     35788998886543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0072  Score=48.99  Aligned_cols=112  Identities=15%  Similarity=0.122  Sum_probs=74.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeccC-CCCEEEEEEc--C-CCCEEEEe-cCCCeEEEEECCcccEEEEeec----c
Q 023018          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWH--P-RGHIVLAG-SEDSTVWMWNADRAAYLNMFSG----H  190 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~  190 (288)
                      ..+++++.||.|+-+|..+|+.+..+... ..++....-.  + ++..++.. +.||.|+.++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            37889999999999999999999888754 1222221111  1 22334443 6899999999988855544432    2


Q ss_pred             CCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Q 023018          191 GSSVTC---GDF-T----PDGKTICTGSDDATLRVWNPKSGENIHVIRG  231 (288)
Q Consensus       191 ~~~i~~---~~~-~----p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  231 (288)
                      .+++..   ... .    ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            223321   000 0    1356789999999999999999999998874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.17  E-value=0.088  Score=44.65  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=60.1

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE--Eecc------CCCCEEEEEEcCC---CCEEEEecC--------
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEG------PGGGVEWVSWHPR---GHIVLAGSE--------  169 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~i~~~~~~~~---~~~l~~~~~--------  169 (288)
                      ..+.|+|.|+|+++++-...+.|++++..+++...  .+..      ....+..|+|+|+   +..|+++..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45789999999866665444578888765554322  2221      2456789999995   444444432        


Q ss_pred             -----CCeEEEEECCcc-------cEEE-Eeec-cCCCeEEEEEcCCCCEEEEEe
Q 023018          170 -----DSTVWMWNADRA-------AYLN-MFSG-HGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       170 -----dg~i~i~d~~~~-------~~~~-~~~~-~~~~i~~~~~~p~~~~l~~~~  210 (288)
                           ...|.-|++...       +.+. .+.. .......|+|.|+|.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 235666654321       1111 1221 123468999999998766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.16  E-value=0.074  Score=43.48  Aligned_cols=215  Identities=11%  Similarity=0.068  Sum_probs=116.9

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-eeEeec---cccCcEEEEEEecC---CCEEEEEeC----C----
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQ---GHKDSVSSLAFSMD---GQLLASGGL----D----  128 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~---~~~~~i~~~~~~~~---~~~l~~~~~----d----  128 (288)
                      -..-..++|.| ++.++++ ...|.|++++ .+++ .+..+.   ........|+++|+   +..|+++..    +    
T Consensus        28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcC-CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            45578999999 6665554 5569999987 3444 222221   12346789999997   445554432    2    


Q ss_pred             CeEEEEeCCCC--c-----ee-EEecc-CCCCEEEEEEcCCCCEEEEecC-------------CCeEEEEECCccc----
Q 023018          129 GLVQIWDPSSG--N-----LK-CTLEG-PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRAA----  182 (288)
Q Consensus       129 g~i~i~d~~~~--~-----~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~----  182 (288)
                      ..|..|+....  .     .+ ..+.. .......++|.|+|.++++.+.             .|.|.-++....-    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777776543  1     11 11221 1113467999999987776432             2456666653210    


Q ss_pred             ---EEEEe-eccCCCeEEEEEcC-CCCEEEEEeCCC---eEEEEeCCC--------C--------ceeEEEcCCCccccC
Q 023018          183 ---YLNMF-SGHGSSVTCGDFTP-DGKTICTGSDDA---TLRVWNPKS--------G--------ENIHVIRGHPYHTEG  238 (288)
Q Consensus       183 ---~~~~~-~~~~~~i~~~~~~p-~~~~l~~~~~dg---~i~i~d~~~--------~--------~~~~~~~~~~~~~~~  238 (288)
                         ....+ .++ .....++|+| .+.++++-....   .|.+...-.        +        .++..+..   ....
T Consensus       185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~~a  260 (354)
T 3a9g_A          185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS---ETWA  260 (354)
T ss_dssp             SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT---CCCC
T ss_pred             CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC---CCcC
Confidence               01111 123 2346789999 555444432221   244332110        0        11112210   2245


Q ss_pred             eEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-cEE--EEe-----cceEEEEEeec
Q 023018          239 LTCLTIS-------ADSTLALSGSKDGSVHMVNITTG-KVC--CLN-----FQYTCVAYDLD  285 (288)
Q Consensus       239 v~~~~~~-------~~~~~l~~~~~dg~i~iwd~~t~-~~~--~~~-----~~~~~~~~~~d  285 (288)
                      ...++|.       .+|.++++.-..+.|...++... +..  ..+     ..+..+++.||
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD  322 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD  322 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC
Confidence            6778883       46777777667788999998753 332  122     34677777776

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.11  E-value=0.081  Score=43.20  Aligned_cols=215  Identities=11%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             CCEEEEEEcCCCCc-EEEEEeCCCeEEEEEccCCeeeEe---e----ccccCcEEEEEEecC---CCEEEEEe-C-----
Q 023018           65 DEVYSVACSPTDAT-LVATGGGDDKGFFWRINQGDWASE---I----QGHKDSVSSLAFSMD---GQLLASGG-L-----  127 (288)
Q Consensus        65 ~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---~----~~~~~~i~~~~~~~~---~~~l~~~~-~-----  127 (288)
                      ..-..|+|.| +++ +++ +...|.|++++.. +.....   +    .........|+|+|+   +.+|.++. .     
T Consensus        18 ~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLP-DNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECS-TTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcC-CCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence            4568999999 666 554 4567999998853 332111   1    112345689999995   44444442 2     


Q ss_pred             --CCeEEEEeCCCC--c--eeE-Eecc------CCCCEEEEEEcCCCCEEEEecC-------------CCeEEEEECCcc
Q 023018          128 --DGLVQIWDPSSG--N--LKC-TLEG------PGGGVEWVSWHPRGHIVLAGSE-------------DSTVWMWNADRA  181 (288)
Q Consensus       128 --dg~i~i~d~~~~--~--~~~-~~~~------~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~  181 (288)
                        ...|..|++...  .  ... .+..      .......+.|.|+|.++++.+.             .|.|.-++....
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence              235666665432  1  111 1111      1112457999999966655433             246777776432


Q ss_pred             c------------EEEEeeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCce----------------------
Q 023018          182 A------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA--TLRVWNPKSGEN----------------------  225 (288)
Q Consensus       182 ~------------~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg--~i~i~d~~~~~~----------------------  225 (288)
                      -            ....+..--.....++|.|....|+++....  .=.|.-+..+..                      
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence            0            1111221123467899999444455443321  112222222111                      


Q ss_pred             ---------eEEEcCCCccccCeEEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCcEEEE--e-----cceEEEEE
Q 023018          226 ---------IHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVCCL--N-----FQYTCVAY  282 (288)
Q Consensus       226 ---------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~t~~~~~~--~-----~~~~~~~~  282 (288)
                               +..+.    +...+..+.|.+       ++.++++.-..+.|...++..++....  +     ..+..+++
T Consensus       255 ~~~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  330 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK----DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT  330 (353)
T ss_dssp             SSCTTSCCCSEEES----SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred             CCCCCccCCeEEeC----CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence                     11111    123466777763       467777776788899888887654432  1     24667777


Q ss_pred             eecc
Q 023018          283 DLDF  286 (288)
Q Consensus       283 ~~df  286 (288)
                      .||-
T Consensus       331 ~pdG  334 (353)
T 2g8s_A          331 GPDG  334 (353)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            7663

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.11  E-value=0.028  Score=45.99  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE---e----ccCCCCEEEEEEcCC---CCEEEEec-C-------C
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---L----EGPGGGVEWVSWHPR---GHIVLAGS-E-------D  170 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~----~~~~~~i~~~~~~~~---~~~l~~~~-~-------d  170 (288)
                      .-..|+|.|++++|+++...|.|++++.. ++....   +    .........++++|+   +..|+++. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45789999999834455678999999853 332111   1    122346789999995   44444432 2       2


Q ss_pred             CeEEEEECCcc--c--EEEE-eec------cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCc--
Q 023018          171 STVWMWNADRA--A--YLNM-FSG------HGSSVTCGDFTPDGKTICTGSD-------------DATLRVWNPKSGE--  224 (288)
Q Consensus       171 g~i~i~d~~~~--~--~~~~-~~~------~~~~i~~~~~~p~~~~l~~~~~-------------dg~i~i~d~~~~~--  224 (288)
                      ..|..|++...  .  .... +..      .......|.|.|+|.++++.+.             .|.|.-++....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666432  1  1111 111      1112357999999955444332             2467666664220  


Q ss_pred             ----------eeEEEcCCCccccCeEEEEEcC-CCCEEEE
Q 023018          225 ----------NIHVIRGHPYHTEGLTCLTISA-DSTLALS  253 (288)
Q Consensus       225 ----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  253 (288)
                                ....+..   .......++|+| .+.++++
T Consensus       178 ~npf~~~~~~~~~i~a~---G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSY---GIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEE---CCSEEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCccEEEE---cCcCccceEEECCCCCEEEE
Confidence                      1111111   123467899999 5655443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.05  E-value=0.083  Score=42.12  Aligned_cols=178  Identities=6%  Similarity=-0.004  Sum_probs=100.3

Q ss_pred             EEEcCCCCcEEEEEeCC-------------CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----CCCeEE
Q 023018           70 VACSPTDATLVATGGGD-------------DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----LDGLVQ  132 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~d-------------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~  132 (288)
                      --+++.+..+..+...+             ..|+..++...+... +.  ...  ...|++++++|+-..    ....|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            34566455455554443             356666766554332 22  122  236778888887665    344566


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      ..++.... ...+..+..    ..+++.++.|+..+. ...|++.++..+.....+.   .... ..+.|++.+|+-...
T Consensus       133 ~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEc
Confidence            66665433 333433322    345667777776554 6788888887655433332   2222 235698998887664


Q ss_pred             C--CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCc
Q 023018          212 D--ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS--KDGSVHMVNITTGK  269 (288)
Q Consensus       212 d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~t~~  269 (288)
                      .  ..|..-++..+. ...+..     ..+  ..|+|++.+|+.+.  ..+.|..-++....
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCcEEEEEECCCCC-eEEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            4  367777776544 344432     223  23777788877653  24567777776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.99  E-value=0.027  Score=45.94  Aligned_cols=91  Identities=18%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             CCcEEEEEeC-CCeEEEEEccC--CeeeE--eec-cccCcEEEEEEecCCCEEEEEeC-C---------CeEEEEeCCCC
Q 023018           76 DATLVATGGG-DDKGFFWRINQ--GDWAS--EIQ-GHKDSVSSLAFSMDGQLLASGGL-D---------GLVQIWDPSSG  139 (288)
Q Consensus        76 ~~~~l~~~~~-dg~i~iw~~~~--~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~  139 (288)
                      ++.+++.|+. ...+.+||+.+  .+...  .+. .......++.+  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            4566666654 34688888863  33322  222 11111122222  5666666665 2         46889998877


Q ss_pred             ceeEEe--c-cCCCCEEEEEEcCCCCEEEEecCC
Q 023018          140 NLKCTL--E-GPGGGVEWVSWHPRGHIVLAGSED  170 (288)
Q Consensus       140 ~~~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~d  170 (288)
                      +....-  . .......++.  .++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            543321  1 1222222333  467788888754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.90  E-value=0.11  Score=41.33  Aligned_cols=163  Identities=7%  Similarity=0.021  Sum_probs=92.3

Q ss_pred             CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC--------------CeEEEEeCCCCceeEEeccCCCC
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD--------------GLVQIWDPSSGNLKCTLEGPGGG  151 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~  151 (288)
                      ++.|+..+..... ...+...  .  +--+++++.+|+-+...              ..|+..++...+...... .  .
T Consensus        36 ~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~--~  107 (302)
T 3s25_A           36 NGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D--P  107 (302)
T ss_dssp             TTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S--C
T ss_pred             CceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C--C
Confidence            4555555544333 3333321  1  33457889888776542              467777777665333222 2  1


Q ss_pred             EEEEEEcCCCCEEEEec----CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee
Q 023018          152 VEWVSWHPRGHIVLAGS----EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENI  226 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~  226 (288)
                        ...|++.+++|+...    ....|+..++.... ...+..+..    ..++|+++.|+-.+. ...|.+.++..+...
T Consensus       108 --~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          108 --CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             --EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             --ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence              236677888888765    34556666765433 344443322    346778888876665 568888888766544


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCcE
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKV  270 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~t~~~  270 (288)
                      ..+.+      ... ..+.|++.+|+-....  ..|..-++..+..
T Consensus       181 ~l~~~------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~  219 (302)
T 3s25_A          181 LFYDC------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP  219 (302)
T ss_dssp             EEECS------CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred             EEeCC------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence            33332      111 2355888777765443  3566666665543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.86  E-value=0.25  Score=44.74  Aligned_cols=193  Identities=11%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC  143 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  143 (288)
                      ...|.++.... ++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..|+..+++...
T Consensus        62 ~~~i~~i~~d~-~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           62 NTRIYCGVIID-NT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SSCEEEEEEET-TT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE
T ss_pred             CceEEEEEEcC-CC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE
Confidence            34688887766 44 455566655 788998776543211112335776654 345 45666655 57888887665432


Q ss_pred             Eec----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe-ec----cCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          144 TLE----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SG----HGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       144 ~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~----~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ...    .....|.++....++.+.+ |+. +-+..++..+++..... ..    ....|.++...+++..|..|+. +.
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G  212 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY  212 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence            211    1234688888887776555 444 45778887665432211 11    1224888888777776666664 46


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      |..+|..+++.. .+...  ....|.++...++|.+.+ |+. +-+.+++..+++.
T Consensus       213 l~~~~~~~~~~~-~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~  263 (758)
T 3ott_A          213 LFQYFPSTGQIK-QTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL  263 (758)
T ss_dssp             EEEEETTTTEEE-EEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC
T ss_pred             CeEEcCCCCeEE-eccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE
Confidence            888998766432 22211  234588888887777655 444 4588888776553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.65  E-value=0.11  Score=41.01  Aligned_cols=197  Identities=15%  Similarity=0.117  Sum_probs=99.6

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .|..++... . ..++. . ||.|+.|-......+..-..-...|..++....  ..+.-. +|.|+.|-......+...
T Consensus        64 ~i~~ia~G~-~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~  136 (282)
T 3qhy_B           64 GVDAIAAGN-Y-HSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP  136 (282)
T ss_dssp             CCCEEEECS-S-EEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred             CEEEEEeCC-C-EEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence            466666653 2 23333 4 788888876542221111112346777766543  333334 899999965543222111


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      ......|..++.....  .++-. +|.|+.|-......+.........|..++.... ..++.  .+|.|+.|-......
T Consensus       137 ~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gq  210 (282)
T 3qhy_B          137 AEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQ  210 (282)
T ss_dssp             GGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTST
T ss_pred             ccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCC
Confidence            1123457777665433  22223 699999976542222111112346777766533 22333  599999996543221


Q ss_pred             eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecceEEEE
Q 023018          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVA  281 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~~~~~  281 (288)
                      +. +.  ......|..++.......++  . +|.|+.|=-....++.....+..++
T Consensus       211 lg-~p--~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~gq~~v~~~v~~ia  260 (282)
T 3qhy_B          211 TT-VP--TEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRTAPSSVQSGVSSIE  260 (282)
T ss_dssp             TC-CC--GGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCCCCGGGSSCEEEEE
T ss_pred             CC-CC--cccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCCccccCCCCcEEEE
Confidence            11 11  01234566776654433333  3 8899999766544433333444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.64  E-value=0.24  Score=41.43  Aligned_cols=188  Identities=10%  Similarity=0.138  Sum_probs=119.4

Q ss_pred             cEEEEEeCCCeEEEEEccC-CeeeEeeccc----cCcEEEEEEecCCCEEEEEe-------CCCeEEEEeCCCCceeEEe
Q 023018           78 TLVATGGGDDKGFFWRINQ-GDWASEIQGH----KDSVSSLAFSMDGQLLASGG-------LDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~  145 (288)
                      ..|+..+. ..|+-|++.. ..+++.+..|    ...|.....+++.++++..+       -.|.+.+|..+.+ ..+.+
T Consensus       117 ~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~i  194 (494)
T 1bpo_A          117 NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI  194 (494)
T ss_dssp             TEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEE
T ss_pred             CeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchh
Confidence            34444443 5799999864 4566666554    34677777788888776543       2478889987754 44556


Q ss_pred             ccCCCCEEEEEEcCCC---CEEEEecC---CCeEEEEECCcc---c------EEEEee---ccCCCeEEEEEcCCCCEEE
Q 023018          146 EGPGGGVEWVSWHPRG---HIVLAGSE---DSTVWMWNADRA---A------YLNMFS---GHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~------~~~~~~---~~~~~i~~~~~~p~~~~l~  207 (288)
                      .+|.+....+....+.   ..++.+..   .+.+.|.++...   .      .+..+.   ....-..++..++.-..++
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            7776544444332211   23444443   278888888432   1      111111   1234456788888888899


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      .-+.-|.|++||+.++.++..-+-   ...+|...+......-+++....|.|.-..+...+.
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEecCceEEEEecccceeeeeecc---cCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            999999999999999998877665   445565555555555556666888887777765543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.56  E-value=0.29  Score=41.45  Aligned_cols=111  Identities=11%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee--Eeecc------ccCcEEEEEEecC---CCEEEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQG------HKDSVSSLAFSMD---GQLLASG  125 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~  125 (288)
                      +..+...-...+.|+|.| +++++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +.+|.++
T Consensus        19 ~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            334433344678999999 6777766554457888876544432  22221      2456789999995   4455444


Q ss_pred             eC-------------CCeEEEEeCCCC-------ceeE-Eecc-CCCCEEEEEEcCCCCEEEEec
Q 023018          126 GL-------------DGLVQIWDPSSG-------NLKC-TLEG-PGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus       126 ~~-------------dg~i~i~d~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~  168 (288)
                      ..             ...|.-|+....       +.+. .+.. .......|+|.|+|.++++.+
T Consensus        98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            32             124555554322       1111 1221 123478999999998777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.51  E-value=0.25  Score=40.10  Aligned_cols=143  Identities=17%  Similarity=0.125  Sum_probs=80.8

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE--e----ccCCCCEEEEEEcCC---CCEEEEe---cCCCeEEE
Q 023018          108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--L----EGPGGGVEWVSWHPR---GHIVLAG---SEDSTVWM  175 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~----~~~~~~i~~~~~~~~---~~~l~~~---~~dg~i~i  175 (288)
                      ..-+.|+|.|+|+++++--..|.|++++...++....  +    .........|+++|+   +..|++.   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3457899999998766655489999998765553221  2    123457899999995   3344432   23456666


Q ss_pred             EECCcc----------cEE-EEeec-cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCc------
Q 023018          176 WNADRA----------AYL-NMFSG-HGSSVTCGDFTPDGKTICTGSD-------------DATLRVWNPKSGE------  224 (288)
Q Consensus       176 ~d~~~~----------~~~-~~~~~-~~~~i~~~~~~p~~~~l~~~~~-------------dg~i~i~d~~~~~------  224 (288)
                      |.+..+          +.+ ..+.. .......|.|.|+|.++++.+.             .|.|.-++....-      
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            665431          111 11211 1123457899999977666442             3455555543210      


Q ss_pred             -eeEEEcCCCccccCeEEEEEcCCCCEEEE
Q 023018          225 -NIHVIRGHPYHTEGLTCLTISADSTLALS  253 (288)
Q Consensus       225 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  253 (288)
                       ....+..   .......++|+|+|.+.++
T Consensus       192 ~~~~i~a~---G~RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          192 PGSPVYSY---GHRNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCCEEEB---CCSBCCEEEECTTCCEEEE
T ss_pred             CCCeEEee---CCCCcceEEECCCCCEEEE
Confidence             0011111   1233567899998776554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.45  E-value=0.28  Score=40.01  Aligned_cols=189  Identities=15%  Similarity=0.101  Sum_probs=100.3

Q ss_pred             CCCEEEEEEcCC---CCcEEEEEeC---C----CeEEEEEccCC-------eee-Eeecc-ccCcEEEEEEecCCCEEEE
Q 023018           64 SDEVYSVACSPT---DATLVATGGG---D----DKGFFWRINQG-------DWA-SEIQG-HKDSVSSLAFSMDGQLLAS  124 (288)
Q Consensus        64 ~~~v~~~~~~~~---~~~~l~~~~~---d----g~i~iw~~~~~-------~~~-~~~~~-~~~~i~~~~~~~~~~~l~~  124 (288)
                      ......|+++|+   ++.++++-+.   +    ..|..|+....       +.+ ..+.. .......++|.|+|.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            345889999994   3555544332   3    56777776543       111 11221 1112357899999986655


Q ss_pred             EeC-------------CCeEEEEeCCCC--------ceeEEeccCCCCEEEEEEcC-CCCEEEEecCCC---eEEEEECC
Q 023018          125 GGL-------------DGLVQIWDPSSG--------NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDS---TVWMWNAD  179 (288)
Q Consensus       125 ~~~-------------dg~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~  179 (288)
                      .+.             .|.|.-++....        .......++ .....++|+| .+.++++-....   .|.+....
T Consensus       152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G  230 (354)
T 3a9g_A          152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKG  230 (354)
T ss_dssp             CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTT
T ss_pred             ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCC
Confidence            432             245655554321        011111222 2356799999 666555543322   23333211


Q ss_pred             c----------------ccEEEEeeccCCCeEEEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-cee--EEEcCCC
Q 023018          180 R----------------AAYLNMFSGHGSSVTCGDFT-------PDGKTICTGSDDATLRVWNPKSG-ENI--HVIRGHP  233 (288)
Q Consensus       180 ~----------------~~~~~~~~~~~~~i~~~~~~-------p~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~  233 (288)
                      .                ..++..+.........++|.       .+|.++++....+.|...++... ...  ..+... 
T Consensus       231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-  309 (354)
T 3a9g_A          231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-  309 (354)
T ss_dssp             CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-
T ss_pred             CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-
Confidence            0                01222221123456788883       46666666666778888887643 221  222211 


Q ss_pred             ccccCeEEEEEcCCCCEEEEEe
Q 023018          234 YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       234 ~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                       ....+..+++.|+|.++++..
T Consensus       310 -~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          310 -VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             -TSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCeeEEEECCCCcEEEEEe
Confidence             245688999999997766654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.45  E-value=0.087  Score=47.33  Aligned_cols=149  Identities=13%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             CCcEEEEEeCC------CeEEEEEccCCeeeEeeccccC-cEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEe-
Q 023018           76 DATLVATGGGD------DKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTL-  145 (288)
Q Consensus        76 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-  145 (288)
                      ++.+++.|+.+      ..+.+||..+.+....-..... .-.+++...++..++.|+.++  .+.+||+.+......- 
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            44566666643      2477888877654433211111 112233324777888887554  7899999887543321 


Q ss_pred             ----ccCCCCEEEEEEcCC-CCEEEEecC--C-----CeEEEEECCccc------EEEEee---ccCCCeEEEEEcCCCC
Q 023018          146 ----EGPGGGVEWVSWHPR-GHIVLAGSE--D-----STVWMWNADRAA------YLNMFS---GHGSSVTCGDFTPDGK  204 (288)
Q Consensus       146 ----~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~------~~~~~~---~~~~~i~~~~~~p~~~  204 (288)
                          ........++.+... +++++.|+.  +     ..+.+||+.+..      -.....   ....... +....++.
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~  609 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRK  609 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCE
Confidence                112222344555654 667777765  2     458899988765      111111   1111122 22333366


Q ss_pred             EEEEEeC--------CCeEEEEeCCCCce
Q 023018          205 TICTGSD--------DATLRVWNPKSGEN  225 (288)
Q Consensus       205 ~l~~~~~--------dg~i~i~d~~~~~~  225 (288)
                      .++.|+.        ...+.+||+.+.+-
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            6777764        34589999987653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.34  E-value=0.24  Score=40.23  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE--EEEe----eccCCCeEEEEEcCC---CCEEEEE-e--CC
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMF----SGHGSSVTCGDFTPD---GKTICTG-S--DD  212 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~~~~~~i~~~~~~p~---~~~l~~~-~--~d  212 (288)
                      +...-...+.|+|.|+|.++++--..|.|++++...++.  +..+    .........|+++|+   ...|++. +  .+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333445688999999999877776689999998765543  2222    123456889999995   4555543 2  34


Q ss_pred             CeEEEEeCCCC----------cee-EEEcCCCccccCeEEEEEcCCCCEEEEEe
Q 023018          213 ATLRVWNPKSG----------ENI-HVIRGHPYHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       213 g~i~i~d~~~~----------~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      +.|.-|.+..+          +.+ ..+.....|  ....|.|.|+|.+.++.+
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence            45666655431          111 122221112  345799999998777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.32  E-value=0.26  Score=47.51  Aligned_cols=199  Identities=10%  Similarity=0.111  Sum_probs=112.5

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeeeEeeccc----cCcEEEEEEecCCCEEEEEe-------CCCeEEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGH----KDSVSSLAFSMDGQLLASGG-------LDGLVQI  133 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~i  133 (288)
                      +|.--.|-.  ...|+..+. ..|+-|++.. ..+++.+..|    ...|.....+++.++++..+       -.|.+.+
T Consensus       107 ~VvfWkWis--~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          107 DVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CceEEEecC--CCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            444455553  334444333 5799999864 3455555544    45677777788888766543       3488889


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcC---CCCEEEEecC---CCeEEEEECCcc---cE------EEEeec---cCCCeE
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHP---RGHIVLAGSE---DSTVWMWNADRA---AY------LNMFSG---HGSSVT  195 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~---dg~i~i~d~~~~---~~------~~~~~~---~~~~i~  195 (288)
                      |....+. .+.+.+|.+....+....   ....+..+..   .+.+.|-++...   .+      +..+..   ...-..
T Consensus       184 yS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             eeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            9876543 334455544333333321   1123332222   267888887432   11      111111   123345


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      ++..++.-..++.-+.-|.|.+||+.++..+..-+.   ...+|...+..+...-+++....|.|.-..+...+.+
T Consensus       263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri---s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             EEEeccccCEEEEEecCceEEEEecccchhhhhccc---cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            677788777888889999999999999987765443   3344444444433333444456777766666655444

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.06  E-value=0.37  Score=37.90  Aligned_cols=183  Identities=17%  Similarity=0.086  Sum_probs=96.5

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .|..++... . ..++. . ||.|+.|-....-.+..-......|..++..... .++. . +|.|+.|-......+-.-
T Consensus        25 ~i~~ia~G~-~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGY-F-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECS-S-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCC-C-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            577777654 2 33333 4 8999999865432221111123456666664332 2333 4 899999975543222111


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018          146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       146 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      ......|..++....  +.++-+ +|.|+.|-....-.+.........|..++....  +.+.-. +|.|+.|-......
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence            112346777777644  333334 899999976542212111122345777665433  333334 79999996543221


Q ss_pred             eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      +.   ........|..++...... ++.  .+|.|+.|=...
T Consensus       172 lg---~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          172 TT---VPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             TS---CCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCT
T ss_pred             CC---CceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCC
Confidence            11   1111234577776654432 233  588999987543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.94  E-value=0.25  Score=42.60  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=74.5

Q ss_pred             CEEEEEEcCCCCEEEEecC-CCeEEEEECCcc------c-------EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          151 GVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA------A-------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~------~-------~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      ....+..+|+|+++++++. +.++.++|++..      +       ...... ........+|.++|.-..+.--|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            3567899999998887765 789999998742      1       122222 344567789999994445555899999


Q ss_pred             EEeCCCC----------ceeEEEcCCCccccCeEEEEE------cCCCCEEEEEeC---CC----------cEEEEEcCC
Q 023018          217 VWNPKSG----------ENIHVIRGHPYHTEGLTCLTI------SADSTLALSGSK---DG----------SVHMVNITT  267 (288)
Q Consensus       217 i~d~~~~----------~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~---dg----------~i~iwd~~t  267 (288)
                      .|++...          ..+..+..+    ..+-.+.-      .|+|++|++.+.   |.          .-.++|+..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~----YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVH----YQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECS----SCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             EEeccHHHHHhcCccCCeeeeccccc----cCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            9998643          344445432    23333333      568999988753   44          347888854


Q ss_pred             Cc
Q 023018          268 GK  269 (288)
Q Consensus       268 ~~  269 (288)
                      .+
T Consensus       479 dk  480 (638)
T 3sbq_A          479 DE  480 (638)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.81  E-value=1  Score=40.70  Aligned_cols=195  Identities=11%  Similarity=0.088  Sum_probs=112.7

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee-ccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +..|+++.-.. .+ .+..|+.+| |..||-.+.+..... ......|.++....++ .|.+|+.+| +..||..+.+..
T Consensus        21 ~n~V~~I~qD~-~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~   95 (758)
T 3ott_A           21 ASVVSCFLQDS-EG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE   95 (758)
T ss_dssp             CCCEEEEEECT-TS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC
T ss_pred             cceEEEEEECC-CC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE
Confidence            46799998876 44 344566667 556663221111000 1123468888777666 566666665 788998776432


Q ss_pred             EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-----ccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       143 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                      .........|.++... ++ .|..++.+ -+..|+..+++.. .+.     .....|.++...+++.+.+ ++.. -|..
T Consensus        96 ~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~  169 (758)
T 3ott_A           96 QPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCR  169 (758)
T ss_dssp             CCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEE
T ss_pred             CcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhh
Confidence            2111122347776543 44 56666665 6888998765533 221     1234688888877776554 5544 5788


Q ss_pred             EeCCCCceeEEEcCCCc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE
Q 023018          218 WNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~  271 (288)
                      |+..++.. ..+.....   ....|.++...+++..|..|+. +-+..++..+++..
T Consensus       170 ~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~  224 (758)
T 3ott_A          170 YIPSNGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK  224 (758)
T ss_dssp             EETTTTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred             CccCCCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence            88876543 22321110   1234788888877665555553 45888998877543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.43  E-value=1.9  Score=41.14  Aligned_cols=210  Identities=10%  Similarity=0.053  Sum_probs=111.1

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEee-ccccCcEEEEEEecC------CCEEEEEeC-CCeEEEEeCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD------GQLLASGGL-DGLVQIWDPS  137 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~------~~~l~~~~~-dg~i~i~d~~  137 (288)
                      .|.+.+.+.   .+++.++ .+.+.++.+..++..... ..-...|.|+++.|.      ++++++|+. |++|+|+.+.
T Consensus       515 ~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          515 NISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            344444432   2444444 577888887765422211 113567999999763      368999996 9999999998


Q ss_pred             CCceeEEeccC-CCCEEEEEEcC--CCCEEEEecCCCeEEEEEC--CcccEEEE--eeccCCCeEEEEEcCCCCEEEEEe
Q 023018          138 SGNLKCTLEGP-GGGVEWVSWHP--RGHIVLAGSEDSTVWMWNA--DRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       138 ~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~--~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      +.+.+....-. .....++.+..  ...+|.+|-.||.+.-+.+  .++.....  ......++.-..+...+..-+.+.
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~  670 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC  670 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence            77655443321 12344554432  3457889999999865554  34443322  222234555444544444433344


Q ss_pred             CCCeEEEEeCCCCceeEEEcCCCccccCe-EEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEE--Ee---cceEEEEE
Q 023018          211 DDATLRVWNPKSGENIHVIRGHPYHTEGL-TCLTISAD--STLALSGSKDGSVHMVNITTGKVCC--LN---FQYTCVAY  282 (288)
Q Consensus       211 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~~~~~dg~i~iwd~~t~~~~~--~~---~~~~~~~~  282 (288)
                      .+....+|--. +...  +...  ....+ ....|+..  ..-++..+ ++.++|..+.+-+...  .+   ..++.++|
T Consensus       671 s~rp~liy~~~-~~l~--~s~l--~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y  744 (1158)
T 3ei3_A          671 SDRPTVIYSSN-HKLV--FSNV--NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY  744 (1158)
T ss_dssp             SSSCEEEEESS-SSEE--EEEB--SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred             CCCCEEEEEcC-CceE--Eecc--ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence            45555555433 3222  1111  11223 23345432  23444443 4568888875432221  11   45666666


Q ss_pred             eec
Q 023018          283 DLD  285 (288)
Q Consensus       283 ~~d  285 (288)
                      .|.
T Consensus       745 ~~~  747 (1158)
T 3ei3_A          745 QEV  747 (1158)
T ss_dssp             EGG
T ss_pred             cCC
Confidence            653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.86  E-value=1.4  Score=36.32  Aligned_cols=185  Identities=11%  Similarity=0.021  Sum_probs=89.3

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCC----eEEEEEccCCeeeEeec------c--------ccCcEEEEEEecC--CCEEE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDD----KGFFWRINQGDWASEIQ------G--------HKDSVSSLAFSMD--GQLLA  123 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~------~--------~~~~i~~~~~~~~--~~~l~  123 (288)
                      ...|.+|++.|.+...+.+++..|    .|.... ..++.-..+.      .        ....|.++++.|.  ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            356999999984444444454444    343322 2222111111      0        1125778888862  44566


Q ss_pred             EEeCCCeEEEEeCCCCceeEEecc-------------------CCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccE
Q 023018          124 SGGLDGLVQIWDPSSGNLKCTLEG-------------------PGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAY  183 (288)
Q Consensus       124 ~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  183 (288)
                      ++...+-|...+ ..++.-..+..                   ....+.+|.++|. ...|++++..+.|...+- .++.
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t  210 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD  210 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence            655556555443 22332222211                   1235788999883 344555544454544322 2221


Q ss_pred             EEEeec-----c--------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccc---cCeEEEEEcC
Q 023018          184 LNMFSG-----H--------GSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT---EGLTCLTISA  246 (288)
Q Consensus       184 ~~~~~~-----~--------~~~i~~~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~  246 (288)
                      -..+..     +        ...+.+|.+.|. ...|+++...+ |...+- .++....+.... ..   ..+..+.++|
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l-~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAM-PREVGDIGFPIVVHQ  287 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGS-CTTTCSCEEEEEECS
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCC-CCCCccceEEEEECC
Confidence            111110     0        134889999985 46777776544 544432 344333332100 11   3356788876


Q ss_pred             -CCCEEEEE
Q 023018          247 -DSTLALSG  254 (288)
Q Consensus       247 -~~~~l~~~  254 (288)
                       +...|+++
T Consensus       288 ~~~~~l~~~  296 (394)
T 3b7f_A          288 RDPRTVWVF  296 (394)
T ss_dssp             SCTTCEEEE
T ss_pred             CCCCEEEEE
Confidence             33444444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.84  E-value=0.28  Score=42.38  Aligned_cols=101  Identities=22%  Similarity=0.163  Sum_probs=68.4

Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEeCCCC------ce-------eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 023018          110 VSSLAFSMDGQLLASGG-LDGLVQIWDPSSG------NL-------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM  175 (288)
Q Consensus       110 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~------~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  175 (288)
                      ...+.++|+|+++++++ .+.++.++++...      +.       ..... ........+|.++|....+-.-|..|.-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            35678899999887776 5789999998731      11       22222 3446788999999966666778999999


Q ss_pred             EECCcc----------cEEEEeeccCCCeEEEE-----EcCCCCEEEEEeC
Q 023018          176 WNADRA----------AYLNMFSGHGSSVTCGD-----FTPDGKTICTGSD  211 (288)
Q Consensus       176 ~d~~~~----------~~~~~~~~~~~~i~~~~-----~~p~~~~l~~~~~  211 (288)
                      |++...          ..+.++..|-.+-.-.+     -.|+|++|++...
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            998653          35556655544333221     1468888888753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.98  E-value=3.3  Score=34.04  Aligned_cols=189  Identities=10%  Similarity=0.076  Sum_probs=111.3

Q ss_pred             CCEEEEEEcCCCCcEEEE-Ee--------------CCCeEEEEEccCC--eeeEeecc------ccCcEEEEEEe---cC
Q 023018           65 DEVYSVACSPTDATLVAT-GG--------------GDDKGFFWRINQG--DWASEIQG------HKDSVSSLAFS---MD  118 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~-~~--------------~dg~i~iw~~~~~--~~~~~~~~------~~~~i~~~~~~---~~  118 (288)
                      -.|..+...+ .+++-+. .+              .--.|.+||+.+.  +.++++.-      ....+..+.+.   |.
T Consensus        87 vsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           87 TSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             EEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            3577777777 4444332 11              1136889999999  88887653      23457888887   22


Q ss_pred             ----CCEEEEEe-CCCeEEEEeCCCCceeEEecc---C---------------CCCEEEEEEcCC----CCEEEEecCCC
Q 023018          119 ----GQLLASGG-LDGLVQIWDPSSGNLKCTLEG---P---------------GGGVEWVSWHPR----GHIVLAGSEDS  171 (288)
Q Consensus       119 ----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~---------------~~~i~~~~~~~~----~~~l~~~~~dg  171 (288)
                          +.++..+. ..+-|.|+|+.+++..+.+..   +               ...+..|+++|+    ++.|+.....+
T Consensus       166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss  245 (381)
T 3q6k_A          166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA  245 (381)
T ss_dssp             TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred             CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence                23444443 467899999998876554420   0               236888999997    67777666544


Q ss_pred             -eEEEEE---CCccc---EEEEeecc--CCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCC-C---ceeEEEcCCCcccc
Q 023018          172 -TVWMWN---ADRAA---YLNMFSGH--GSSVTCGDFT-PDGKTICTGSDDATLRVWNPKS-G---ENIHVIRGHPYHTE  237 (288)
Q Consensus       172 -~i~i~d---~~~~~---~~~~~~~~--~~~i~~~~~~-p~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~  237 (288)
                       .++-..   ++...   .++.+-..  .+.-..+++. .+|..+++--....|..|+..+ .   .....+...+ .-.
T Consensus       246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~  324 (381)
T 3q6k_A          246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFV  324 (381)
T ss_dssp             SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCC
T ss_pred             CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-Ccc
Confidence             343333   12221   11212111  1334456675 5676666667788899999875 1   2234443222 334


Q ss_pred             CeEEEEEcCCCCEEEEEe
Q 023018          238 GLTCLTISADSTLALSGS  255 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~  255 (288)
                      .+..+.+.++|.+.+..+
T Consensus       325 ~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          325 FGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             SEEEEEECTTSCEEEEEC
T ss_pred             ccCeEEECCCCeEEEEEC
Confidence            567788877776655554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.84  E-value=6.2  Score=36.86  Aligned_cols=37  Identities=8%  Similarity=0.084  Sum_probs=32.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.+++..++..++++-+.|+++|+|++.+|+++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677778888889999999999999999999999875

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.64  E-value=3.7  Score=33.75  Aligned_cols=158  Identities=10%  Similarity=0.057  Sum_probs=96.5

Q ss_pred             cEEEEEEecCCCEEEEE-e-C-------------CCeEEEEeCCCC--ceeEEeccC------CCCEEEEEEc---CC--
Q 023018          109 SVSSLAFSMDGQLLASG-G-L-------------DGLVQIWDPSSG--NLKCTLEGP------GGGVEWVSWH---PR--  160 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~-~-~-------------dg~i~i~d~~~~--~~~~~~~~~------~~~i~~~~~~---~~--  160 (288)
                      .|..+...+.+++.+.= + -             --.|.+||+.+.  +.++++.-+      .+.+..+.+.   |.  
T Consensus        88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~  167 (381)
T 3q6k_A           88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGD  167 (381)
T ss_dssp             CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTT
T ss_pred             EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCC
Confidence            57777777766643321 1 0             126889999999  888876532      3468888887   22  


Q ss_pred             --CCEEEEe-cCCCeEEEEECCcccEEEEee--------------c----cCCCeEEEEEcCC----CCEEEEEeCCC-e
Q 023018          161 --GHIVLAG-SEDSTVWMWNADRAAYLNMFS--------------G----HGSSVTCGDFTPD----GKTICTGSDDA-T  214 (288)
Q Consensus       161 --~~~l~~~-~~dg~i~i~d~~~~~~~~~~~--------------~----~~~~i~~~~~~p~----~~~l~~~~~dg-~  214 (288)
                        +.+++.+ +..+.|.++|+.+++.-+...              +    ....+..|+++|+    ++.|+.....+ .
T Consensus       168 c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          168 CSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             SCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             CCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence              2343433 346789999999876544331              0    0246788999997    78888777655 2


Q ss_pred             EEEEe---CCCC---ceeEEEcCCCccccCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 023018          215 LRVWN---PKSG---ENIHVIRGHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       215 i~i~d---~~~~---~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ++-..   ++..   ..+..+... .....-..+++. .+|.++++--....|..|+..+
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEEEEHHHhhCcchhhceEEeeec-CCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            33222   1211   222322211 011233456775 5787777777888999999876

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.21  E-value=4.1  Score=34.50  Aligned_cols=106  Identities=7%  Similarity=-0.027  Sum_probs=59.8

Q ss_pred             CCEEEEEEcCCCC-EEEEecCCCeEEEEECCcc---cEEEEee---c------cCCCeEEEEEcCC---CCEEEEE-eC-
Q 023018          150 GGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA---AYLNMFS---G------HGSSVTCGDFTPD---GKTICTG-SD-  211 (288)
Q Consensus       150 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~---~------~~~~i~~~~~~p~---~~~l~~~-~~-  211 (288)
                      ...+.|+|.|++. .|+++...|.|++++....   ..+..+.   .      ....+..|+|+|+   ..+|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3468899999986 4555667899999975322   1222221   1      1356789999995   2344333 21 


Q ss_pred             -C----------CeEEEEeCCCC----------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018          212 -D----------ATLRVWNPKSG----------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       212 -d----------g~i~i~d~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                       +          ..|.-|.+..+          +.+..+... ........|.|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444554321          222222211 12234678999999987777654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.25  E-value=6.2  Score=33.43  Aligned_cols=103  Identities=19%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             cEEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc---eeEEec----c-----CCCCEEEEEEcCC----CCEEEEecC--
Q 023018          109 SVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN---LKCTLE----G-----PGGGVEWVSWHPR----GHIVLAGSE--  169 (288)
Q Consensus       109 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~----~-----~~~~i~~~~~~~~----~~~l~~~~~--  169 (288)
                      .-+.|+|.|++. .|+++...|.|++++.....   .+..+.    .     .......|+|+|+    +.++++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347899999996 56666788999999754321   122221    1     1356889999995    444443221  


Q ss_pred             C----------CeEEEEECCc----------ccEEEEee--ccCCCeEEEEEcCCCCEEEEEeC
Q 023018          170 D----------STVWMWNADR----------AAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       170 d----------g~i~i~d~~~----------~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +          ..|.-|.+..          .+.+..+.  ........|+|.|+|.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          1444455532          12233222  11224678999999977666554

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.21  E-value=5.9  Score=31.49  Aligned_cols=186  Identities=9%  Similarity=0.043  Sum_probs=107.1

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeee-------E--eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC---CCCc---
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWA-------S--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP---SSGN---  140 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~-------~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~---  140 (288)
                      +..++++.+.+|.|+--.+...+..       .  .+. ....+..+........++..+..|.++-+..   ....   
T Consensus         7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4567788899999998876543211       1  122 2234455555555567777788888765543   2221   


Q ss_pred             ---e---eEEeccCCCCEEEEEEcC---CCCEEEEecCCCeEEEEECCcc-------cEEEEeeccCCCeEEEEEcCCCC
Q 023018          141 ---L---KCTLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       141 ---~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                         .   ...+.. ...|.++..-+   ....++..+..|.++...+...       .....+.. ...+..+.......
T Consensus        86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence               1   111222 23355443332   4567888899999998877432       22222332 44565555555566


Q ss_pred             EEEEEeCCCeEEEEeCCC----C---ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          205 TICTGSDDATLRVWNPKS----G---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .++..+..|.+..+....    +   +-+..+.-.  ....|..+..-.++..|++.+..|..+...+.
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            788888999988887542    1   112222211  23456666555556667788888888888874

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.79  E-value=15  Score=34.26  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=31.9

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL  145 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  145 (288)
                      .+.+++..++..++++-+.|+++++|++.+++++...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677777788889999999999999999999887764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.78  E-value=8.7  Score=31.42  Aligned_cols=182  Identities=10%  Similarity=0.101  Sum_probs=89.9

Q ss_pred             CcEEEEEeCCCeEEEEEccC-C-eeeEe-eccccCcEEEEEEec--CCCEEEEEeCCC----eEEEEeCCCCceeEEecc
Q 023018           77 ATLVATGGGDDKGFFWRINQ-G-DWASE-IQGHKDSVSSLAFSM--DGQLLASGGLDG----LVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~-~-~~~~~-~~~~~~~i~~~~~~~--~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~  147 (288)
                      ...|.+|+..| +.+++... + ..... .......|.+|++.|  .+. |.+++..|    .|...+ ..++.-..+..
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~   98 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPER-MLMAARTGHLGPTVFRSD-DGGGNWTEATR   98 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTC-EEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCe-EEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence            44666777766 55555432 2 22211 112245799999998  444 44444444    344332 33332222211


Q ss_pred             --------------CCCCEEEEEEcCC--CCEEEEecCCCeEEEEECC--cccEEEEee----------------ccCCC
Q 023018          148 --------------PGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNAD--RAAYLNMFS----------------GHGSS  193 (288)
Q Consensus       148 --------------~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~--~~~~~~~~~----------------~~~~~  193 (288)
                                    ....|.++++.|.  ...+++++..+.|...+-.  +.+.+....                .....
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence                          1124778899872  4556666555666555321  112221110                01235


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCC-Cc-c--------ccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 023018          194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGH-PY-H--------TEGLTCLTISAD-STLALSGSKDGSVH  261 (288)
Q Consensus       194 i~~~~~~p-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-~--------~~~v~~~~~~~~-~~~l~~~~~dg~i~  261 (288)
                      +.+|.+.| +...|+.+...+.|...+ ..++....+... .. .        ...+.++.++|. ...|+++...| |+
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~  256 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY  256 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence            78899988 345566665555555443 233433333210 00 0        134888999985 45666665444 44


Q ss_pred             EE
Q 023018          262 MV  263 (288)
Q Consensus       262 iw  263 (288)
                      ..
T Consensus       257 ~s  258 (394)
T 3b7f_A          257 RM  258 (394)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.01  E-value=1.4  Score=42.03  Aligned_cols=37  Identities=8%  Similarity=0.084  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+.+++..++..+|++-+.|+++|+|++.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3445566678889999999999999999999999875

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=85.26  E-value=13  Score=29.78  Aligned_cols=185  Identities=11%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             CcEEEEEeCCCeEEEEEccCCe---------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE---EeCCCC-----
Q 023018           77 ATLVATGGGDDKGFFWRINQGD---------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI---WDPSSG-----  139 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~-----  139 (288)
                      ..++++.+.+|.|+--.+.+.+         .-..+. ....+..+........|+.-+..|.++-   |++...     
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            4577788899999876543211         111222 2334555544455556666666776554   445432     


Q ss_pred             -ceeE---EeccCCCCEEEEEEcC---CCCEEEEecCCCeEEEEECCccc-------EEEEeeccCCCeEEEEEcCCCCE
Q 023018          140 -NLKC---TLEGPGGGVEWVSWHP---RGHIVLAGSEDSTVWMWNADRAA-------YLNMFSGHGSSVTCGDFTPDGKT  205 (288)
Q Consensus       140 -~~~~---~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~p~~~~  205 (288)
                       ..+.   .+. ....|.++..-+   +...+++.+..|.++...+....       ....++. ...+..+........
T Consensus        82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~  159 (327)
T 3uc1_A           82 GQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDD  159 (327)
T ss_dssp             CEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCE
T ss_pred             CEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCE
Confidence             1111   122 233455544333   46799999999999998765422       1222332 344555555555677


Q ss_pred             EEEEeCCCeEEEEeCC--CCce-------eEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          206 ICTGSDDATLRVWNPK--SGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       206 l~~~~~dg~i~i~d~~--~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      |+..+..|.+..+...  .-..       +..+.- . ....|.++...+.+..|+..+..|.++.-.+.
T Consensus       160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             EEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence            8888889988877665  2111       111111 1 34557777666666688888899988887753

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=85.07  E-value=12  Score=29.15  Aligned_cols=193  Identities=11%  Similarity=0.025  Sum_probs=107.9

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEE---EEccCCeeeEeeccccCcEEEEEEec--CCCEEEEEeCCCeEEEEeCCCC
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFF---WRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~i---w~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      +.+..+.-..... .|+.-+..|.++-   |++........+. ....|..+.. +  +..+++..+..|.++-..+...
T Consensus        24 D~~~~~~~~~t~~-~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~  100 (276)
T 3no0_A           24 APVVNILRVPFTE-GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF  100 (276)
T ss_dssp             CCEEEEEEEETTS-CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred             CeEEEEEEECCCC-EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence            3455444443233 3444555677654   3333332111133 3556666644 4  4568999999999998876543


Q ss_pred             c------eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCc---------ccEEEEeeccCCCeEEEEEcCCCC
Q 023018          140 N------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---------AAYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       140 ~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                      .      ....++ ....+..+........++..+..|.++.+....         |.....+. ....|..+...+++.
T Consensus       101 ~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~  178 (276)
T 3no0_A          101 EYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEP  178 (276)
T ss_dssp             TTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCS
T ss_pred             hhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCC
Confidence            2      111222 234566665555566788888889988887532         11111222 234566655555667


Q ss_pred             EEEEEeCCCeEEEEeCCC-------CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEE--EEcC
Q 023018          205 TICTGSDDATLRVWNPKS-------GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNIT  266 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~~  266 (288)
                      .++..+..|.++...+..       ++-+..+.    ....+..+........++..+..|.+..  +++.
T Consensus       179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~----~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG----TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC----SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc----CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            888889999988876532       22222331    2344544443333445666677888777  7654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.48  E-value=6.2  Score=34.54  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=43.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          193 SVTCGDFTPDGKTICTGSDD------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       193 ~i~~~~~~p~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ..-.|+|+|.|++++.-..+            ..+.+.+..+++..+.+...  ....++.++|+||++.|++.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--IGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--TTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--CCccCcCeeECCCCCEEEEE
Confidence            34678999999866554322            24667787788776666654  45779999999999888775

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.27  E-value=6.5  Score=35.20  Aligned_cols=34  Identities=6%  Similarity=0.121  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |.++.+  +..+|++-+.|.++|+|++.+++++.+.
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence            444444  4679999999999999999999988876

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=83.00  E-value=16  Score=28.95  Aligned_cols=185  Identities=12%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeE---------eeccccCcEEEEEEecCCCEEEEEeCCCeEEEE---eCCCC----
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWAS---------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW---DPSSG----  139 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~---d~~~~----  139 (288)
                      +..++++.+.+|.|+--.+...+...         .+. ....+..+........|+..+..|.++-+   ++...    
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a   80 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence            44577888999999877665422111         122 22344444444455567777778875544   44332    


Q ss_pred             --ceeE---EeccCCCCEEEEEEc---CCCCEEEEecCCCeEEEEECCcc-------cEEEEeeccCCCeEEEEEcCCCC
Q 023018          140 --NLKC---TLEGPGGGVEWVSWH---PRGHIVLAGSEDSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDGK  204 (288)
Q Consensus       140 --~~~~---~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~p~~~  204 (288)
                        ..+.   .+. ....|.++..-   .++.+++..+..|.++...+...       .....+... ..+..+.......
T Consensus        81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~  158 (307)
T 1zi0_A           81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED  158 (307)
T ss_dssp             CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred             CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence              1111   122 23345555432   34567889999999999876421       112223323 4555555555556


Q ss_pred             EEEEEeCCCeEEEEeCCCC-------ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          205 TICTGSDDATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      .++..+..|.+..+....-       +-+..+.-.  ....|.++...+++..|++.+..|.++-.++
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~  224 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAV  224 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence            7878888998877765321       111212111  2345666655555567788888888888776

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=82.88  E-value=28  Score=31.72  Aligned_cols=164  Identities=16%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc------ccCcEEEEEEecCC-CEEEEEeCCCe----EE
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDG-QLLASGGLDGL----VQ  132 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~~~~~dg~----i~  132 (288)
                      ...|.+|+++|.+...+++++..+.|....=...........      ....+.+|++.|.. ..++++.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            458999999997677777777777665544222223222211      13469999999843 34444432211    23


Q ss_pred             EE-eCCCCceeEEeccC---------CCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcc---cEEEEee---ccCCCeE
Q 023018          133 IW-DPSSGNLKCTLEGP---------GGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA---AYLNMFS---GHGSSVT  195 (288)
Q Consensus       133 i~-d~~~~~~~~~~~~~---------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~---~~~~~i~  195 (288)
                      || ....++.-..+...         ...+..++++|. ...++++...+.|.. ....+   +.+....   .....+.
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~~  172 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGYT  172 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCeE
Confidence            33 23344433332211         113556888874 345666654443322 11122   2222111   1124578


Q ss_pred             EEEEcC-CCCEEEEEeCC-CeEEEEeCCCCceeEEE
Q 023018          196 CGDFTP-DGKTICTGSDD-ATLRVWNPKSGENIHVI  229 (288)
Q Consensus       196 ~~~~~p-~~~~l~~~~~d-g~i~i~d~~~~~~~~~~  229 (288)
                      .+.+.| ++..++++..+ +.|+. ....|+....+
T Consensus       173 ~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG~TW~~~  207 (789)
T 1sqj_A          173 SVIFDPERNGTIYASATAPQGMYV-THDGGVSWEPV  207 (789)
T ss_dssp             EEEECTTSTTCEEEEESSTTCEEE-ESSTTSSCEEC
T ss_pred             EEEECCCCCCEEEEEEcCCCeEEE-EcCCCcCcccC
Confidence            899988 45567666654 44432 33334444443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.53  E-value=20  Score=28.62  Aligned_cols=155  Identities=8%  Similarity=-0.001  Sum_probs=90.7

Q ss_pred             CCEEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCe-------eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEe
Q 023018           65 DEVYSVACSPT--DATLVATGGGDDKGFFWRINQGD-------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD  135 (288)
Q Consensus        65 ~~v~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  135 (288)
                      ..|.++...+.  ...++++.+..|.++.-.+....       ....+.. ...+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            34555443331  35688899999999998875422       1222333 34555555555556788888889888776


Q ss_pred             CC--CC----c-----eeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc-------cEEEEee--ccCCCeE
Q 023018          136 PS--SG----N-----LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-------AYLNMFS--GHGSSVT  195 (288)
Q Consensus       136 ~~--~~----~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~--~~~~~i~  195 (288)
                      ..  .-    +     ....+. ....|.++...+.+..++..+..|.++.-.+...       +-+..++  .....+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            65  21    1     111122 2345777666666678899999999988875322       2222222  2133455


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCC
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPK  221 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~  221 (288)
                      .+........++..+..|.+.-+...
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEehh
Confidence            54444445567777778877777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-28
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (267), Expect = 9e-28
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI--WDP 136
           L  +G  D     W + +G       GH+  ++++ F  +G   A+G  D   ++     
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196
               +  + +    G+  VS+   G ++LAG +D    +W+A +A    + +GH + V+C
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 197 GDFTPDGKTICTGSDDATLRVWN 219
              T DG  + TGS D+ L++WN
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (259), Expect = 1e-26
 Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 5/179 (2%)

Query: 86  DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
           D     W I  G   +   GH   V SL+ + D +L  SG  D   ++WD   G  + T 
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTV--WMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
            G    +  + + P G+    GS+D+T   +   AD+             +T   F+  G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
           + +  G DD    VW+    +   V+ G   H   ++CL ++ D     +GS D  + +
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.7 bits (226), Expect = 6e-22
 Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 47/257 (18%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH  ++Y++     D+ L+ +   D K   W     +    I      V + A++ 
Sbjct: 49  RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-------------------------- 151
            G  +A GGLD +  I++  +      +     G                          
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167

Query: 152 -------------------VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS 192
                              V  +S  P   + ++G+ D++  +W+         F+GH S
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227

Query: 193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252
            +    F P+G    TGSDDAT R+++ ++ + +           G+T ++ S    L L
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLL 286

Query: 253 SGSKDGSVHMVNITTGK 269
           +G  D + ++ +     
Sbjct: 287 AGYDDFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.7 bits (174), Expect = 6e-15
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 48/222 (21%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           ++GH   + ++ +  D +LL S   DG + IWD  + N    +      V   ++ P G+
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGS------------------------------ 192
            V  G  D+   ++N          S   +                              
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170

Query: 193 ---------------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                           V      PD +   +G+ DA+ ++W+ + G       G   H  
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---HES 227

Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279
            +  +    +     +GS D +  + ++   +          
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 5e-12
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +        + SV+ S     L+  G  D     W   + D A  + GH + VS L  + 
Sbjct: 264 YSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 118 DGQLLASGGLDGLVQIWD 135
           DG  +A+G  D  ++IW+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 16/96 (16%), Positives = 36/96 (37%)

Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
             + TL G    +  + W     ++++ S+D  + +W++     ++      S V    +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
            P G  +  G  D    ++N K+ E    +      
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 2e-26
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 72  CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131
               +   + +   D     W +  G       GH++ V  +  + DG L+AS   D  V
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 132 QIWDPSSGNLKCTLEGPGGGVEWVSWH--------------------PRGHIVLAGSEDS 171
           ++W  ++   K  L      VE +SW                       G  +L+GS D 
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           T+ MW+      L    GH + V    F   GK I + +DD TLRVW+ K+   +  +  
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
              H   +T L     +   ++GS D +V +
Sbjct: 288 ---HEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.0 bits (245), Expect = 1e-24
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
             F+GH + V  V  +  D TL+A+   D     W +   +  +E++ H+  V  ++++ 
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 118 D--------------------GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157
           +                    G  L SG  D  +++WD S+G    TL G    V  V +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 158 HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217
           H  G  +L+ ++D T+ +W+      +   + H   VT  DF      + TGS D T++V
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 218 W 218
           W
Sbjct: 316 W 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.9 bits (229), Expect = 2e-22
 Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 3/184 (1%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           + GH+  V+ + F     ++ S   D  +++WD  +G+ + TL+G    V+ +S+   G 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
           ++ + S D T+ +W+      +    GH  +V+     P+G  I + S D T+++W  ++
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282
           G  +    GH         +  + D TL  S S D +V +  + T +      ++  V  
Sbjct: 133 GYCVKTFTGHREWV---RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 283 DLDF 286
            + +
Sbjct: 190 CISW 193

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.0 bits (224), Expect = 7e-22
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 18/230 (7%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           +  SGH   V  V   P   +++ +   D     W    GD+   ++GH DSV  ++F  
Sbjct: 11  YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            G+LLAS   D  +++WD        T+ G    V  VS  P G  +++ S D T+ MW 
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--- 234
                 +  F+GH   V       DG  I + S+D T+RVW   + E    +R H +   
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 235 --------------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
                            G             LSGS+D ++ M +++TG  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 1e-18
 Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 24/233 (10%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH+D V  ++   +    +A+   D     W     +    + GH  +VSS++   
Sbjct: 53  RTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           +G  + S   D  +++W+  +G    T  G    V  V  +  G ++ + S D TV +W 
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 178 ADRAAYLNMFSGHGSSVTCGDFT--------------------PDGKTICTGSDDATLRV 217
                       H   V C  +                       G  + +GS D T+++
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
           W+  +G  +  + GH      +  +   +     LS + D ++ + +    + 
Sbjct: 232 WDVSTGMCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 3e-17
 Identities = 26/132 (19%), Positives = 44/132 (33%)

Query: 45  SDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ 104
                       +   S           S      + +G  D     W ++ G     + 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
           GH + V  + F   G+ + S   D  +++WD  +     TL      V  + +H     V
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 165 LAGSEDSTVWMW 176
           + GS D TV +W
Sbjct: 305 VTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 5e-13
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH + V  V         + +   D     W          +  H+  V+SL F  
Sbjct: 241 MTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 118 DGQLLASGGLDGLVQIWD 135
               + +G +D  V++W+
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.9 bits (221), Expect = 4e-21
 Identities = 55/189 (29%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-------GHKDSV 110
            +     D V +VA SP D   +A G  D     W    G     +        GHKDSV
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------------CTLEGPGGGVEWVSWH 158
            S+ F+ DGQ + SG LD  V++W+  + N K             T  G    V  V+  
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC------GDFTPDGKTICTGSDD 212
                +L+GS+D  V  W+      L M  GH +SV            P+     TGS D
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 213 ATLRVWNPK 221
              R+W  K
Sbjct: 378 CKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.9 bits (203), Expect = 1e-18
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 22/213 (10%)

Query: 72  CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131
                   + +G GD     W +  G  +  +       +      DG+ +A+G LD  V
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 132 QIWDPSSGNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-- 182
           ++WD  +G L   L+       G    V  V +   G  V++GS D +V +WN   A   
Sbjct: 230 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 183 ----------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                         + GH   V     T + + I +GS D  +  W+ KSG  + +++GH
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

Query: 233 P---YHTEGLTCLTISADSTLALSGSKDGSVHM 262
                        ++  +  +  +GS D    +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.6 bits (197), Expect = 6e-18
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 17/242 (7%)

Query: 44  GSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI 103
              A N +  + +T         + SV  SP D   +ATG  D     W I        +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
           QGH+  + SL +   G  L SG  D  V+IWD  +G    TL    G          G  
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 164 VLAGSEDSTVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
           + AGS D  V +W+++         +     +GH  SV    FT DG+++ +GS D +++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 217 VWNPKSGENI---------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
           +WN ++  N               +  H + +  +  + +    LSGSKD  V   +  +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 268 GK 269
           G 
Sbjct: 340 GN 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 1e-17
 Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 46  DAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG 105
           +     + D   H    H+  V  V  S  D   +ATG  +     +R++ G   + +  
Sbjct: 44  NPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSD 101

Query: 106 ------------------HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147
                                 + S+ FS DG+ LA+G  D L++IWD  +  +   L+G
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161

Query: 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
               +  + + P G  +++GS D TV +W+          S      T      DGK I 
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKDGSVHMV 263
            GS D  +RVW+ ++G  +  +         H + +  +  + D    +SGS D SV + 
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

Query: 264 NITTGK 269
           N+    
Sbjct: 282 NLQNAN 287

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 4e-17
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 19/142 (13%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-------- 105
           D      +GH D VYSV  +  D   V +G  D     W +   +  S+ +         
Sbjct: 244 DSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 106 ----HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV------EWV 155
               HKD V S+A + + + + SG  D  V  WD  SGN    L+G    V         
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362

Query: 156 SWHPRGHIVLAGSEDSTVWMWN 177
           S  P  ++   GS D    +W 
Sbjct: 363 SLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 22/186 (11%)

Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG------------- 151
            H   V  + FS DG+ LA+G  +   Q++  S G+L   L                   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 152 -----VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206
                +  V + P G  +  G+ED  + +W+ +    + +  GH   +   D+ P G  +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266
            +GS D T+R+W+ ++G+               T      D     +GS D +V + +  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLT---LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 267 TGKVCC 272
           TG +  
Sbjct: 236 TGFLVE 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-15
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 69  SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128
           +V C   D   V +G  D     W          +QGH  +    +   DG  + SG LD
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLD 196

Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188
             +++WD  +GN   TL G            + +I+++G+ DSTV +W+      L    
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 189 GHGSSV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY--HTEGLTCLTIS 245
           G             +   + T SDD T+++W+ K+GE I  +           +  +  S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 246 ADSTLALSGSKDGS 259
               +   GS++G+
Sbjct: 315 NTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 5e-14
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 46/233 (19%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           WR  +      ++GH D V +      G  + SG  D  +++W   +G    TL G  GG
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 152 VEWVSWHP--------------------------------------RGHIVLAGSEDSTV 173
           V                                                 V++GS D+T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
            +W+ +    L++  GH ++V C  +    + + +G+ D  ++VW+P++   +H ++GH 
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286
                    ++  D    +SGS D S+ + ++ TG        +  +   ++ 
Sbjct: 178 NR-----VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           H   GH++ VY       D   V +G  D     W +  G+    + GH+   S +    
Sbjct: 171 HTLQGHTNRVY---SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK- 226

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMW 176
              +L SG  D  V+IWD  +G    TL+GP      V+      + V+  S+D TV +W
Sbjct: 227 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 177 NADRAAYLNMF-----SGHGSSVTCGDFTPDGKTICTGSDDAT----LRVWN 219
           +     ++         G G  V     +        GS + T    L V +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 7e-13
 Identities = 54/262 (20%), Positives = 91/262 (34%), Gaps = 49/262 (18%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
           S  +  GH D V +  C       + +G  D+    W    G     + GH   V S   
Sbjct: 8   SPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65

Query: 116 SMD--------------------------------------GQLLASGGLDGLVQIWDPS 137
             +                                       + + SG  D  +++WD  
Sbjct: 66  RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125

Query: 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197
           +G     L G    V        G  V++G+ D  V +W+ +    L+   GH  +    
Sbjct: 126 TGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVY 181

Query: 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257
               DG  + +GS D ++RVW+ ++G  IH + GH   T G     +     + +SG+ D
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG-----MELKDNILVSGNAD 236

Query: 258 GSVHMVNITTGKVCCLNFQYTC 279
            +V + +I TG+          
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNK 258

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 8/219 (3%)

Query: 52  QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS 111
              ++            +V C       V +G  D     W I  G     + GH  +V 
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
                 DG+ + SG  D +V++WDP +     TL+G        S    G  V++GS D+
Sbjct: 142 C--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDT 197

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           ++ +W+ +    ++  +GH S  +          + +G+ D+T+++W+ K+G+ +  ++G
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
              H        +  +    ++ S DG+V + ++ TG+ 
Sbjct: 256 PNKHQS--AVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 5/181 (2%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPRG 161
               + +S  A++ D   +A    +  V I++ S         L+   G V  V W P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 162 HIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           + ++    D   ++W      +    +      +  C  + P+ K    GS    + +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 220 PKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYT 278
            +   +              +  L    +S L  +GS D    + +    +V        
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 279 C 279
            
Sbjct: 184 W 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 3e-14
 Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 9/183 (4%)

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMD 118
           S   + +   A +  D T +A    + +   +  +   W    E++ H   V+ + ++ D
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
              + + G D    +W       K    +         V W P       GS    + + 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 177 N----ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                 D     ++     S+V   D+ P+   +  GS D   R+++    E        
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182

Query: 233 PYH 235
           P+ 
Sbjct: 183 PWG 185

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 7/172 (4%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              S     V+ V  S    + VA    D        ++    + +      + ++ F  
Sbjct: 195 FESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           +  L+A+G  D    ++   S   K +  G     +  S           + D       
Sbjct: 254 ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKT----ICTGSDDATLRVWNPKSGEN 225
           +  AA   + S H +SV+       GK      CT   D  + +W+ +S E+
Sbjct: 313 SA-AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 9/184 (4%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
           +  ++  G+   E       V  + FS +G  +A    D  V + D        TL    
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +  V++     +V AG +   V  +  D AA    F G                    
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVL-FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL----SGSKDGSVHMVNI 265
           + D          G           H   ++ +++ +          +   DG + + ++
Sbjct: 303 NLDKKASSE----GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 266 TTGK 269
            + +
Sbjct: 359 RSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 1e-07
 Identities = 41/292 (14%), Positives = 80/292 (27%), Gaps = 75/292 (25%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---------------------- 94
            H    H+ +V  V  +P D+  + T G D   + W +                      
Sbjct: 44  VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

Query: 95  --------------------------NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128
                                     +        +  + +V SL +  +  LLA+G  D
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 129 GLVQIWDPSSGNLKC------------------TLEGPGGGVEWVSWHPRGHIVLAGSED 170
              +I+      ++                         G V  V +   G  V   S D
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 222

Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
           STV + +AD+   +   +     +    F  +   +  G D     ++   S        
Sbjct: 223 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC-FPVLFTYDSAAGKLSFG 281

Query: 231 GHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVCCLNF 275
           G     +  +   ++A       D   +  GS      + ++    V  ++ 
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 3e-14
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 2/135 (1%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           ++GH  SV +     +   + +G  D +++++D  +      L G  GGV  + +   G 
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPK 221
           +V   ++ +                  + +                 GS D TL VW   
Sbjct: 67  LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126

Query: 222 SGENIHVIRGHPYHT 236
              ++        + 
Sbjct: 127 KESSVPDHGEEHDYP 141

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 3/179 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
               GH   V +  C   +   V TG  D     +      +  ++ GH   V +L ++ 
Sbjct: 6   TTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMW 176
            G L++      +                             +    +  GS D+T+ +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
              + + +                 +              V       NI V   +   
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 8e-09
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 7/210 (3%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
           P+++ +        + SV        +V +G  D+    W + Q      + GH D + S
Sbjct: 147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 206

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
             +  + +   S  +D  ++IWD  +G L  TL+G       V         L  +    
Sbjct: 207 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH---TALVGLLRLSDKFLVSAAADG 263

Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
                            H +      F      + +GS++    ++N +SG+ +H     
Sbjct: 264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILK 322

Query: 233 PYHTEGLTCLTISADSTLALSGSKDGSVHM 262
               + +  +      TL  +  KDG   +
Sbjct: 323 --DADQIWSVNFKGK-TLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 84  GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-LK 142
              D                  H +  +   F +   +L SG  +    I++  SG  + 
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317

Query: 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
             +      +  V++  +  +V A  +D   ++   D
Sbjct: 318 ANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 4/70 (5%), Positives = 17/70 (24%), Gaps = 2/70 (2%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICT 208
             +  ++       +L    ++   ++N      +          +   +F      +  
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAA 340

Query: 209 GSDDATLRVW 218
              D    + 
Sbjct: 341 VEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 37/269 (13%), Positives = 84/269 (31%), Gaps = 56/269 (20%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
              SGH   V+++  +     +  +     + +  +        E          +    
Sbjct: 47  LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 106

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--------------------- 156
           + + + +G  D  + +W     +                                     
Sbjct: 107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166

Query: 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
               G+IV++GS D+T+ +W+  +   L + SGH   +    +  + K   + S D T+R
Sbjct: 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226

Query: 217 VWNPKSGENIHVIR-----------------------------------GHPYHTEGLTC 241
           +W+ ++GE ++ ++                                      YH   L+ 
Sbjct: 227 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA 286

Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKV 270
           +T    S   L    +   ++ N+ +GK+
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKL 315

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 67.6 bits (163), Expect = 2e-13
 Identities = 17/165 (10%), Positives = 38/165 (23%), Gaps = 18/165 (10%)

Query: 79  LVATGGGDDKGFFWRINQGDWASE-------IQGHKDSVSSLAFSMDGQLLASGGLDG-- 129
            +                 +++ E       I     S +            +G  D   
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 130 -----LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184
                     DP    +   LE                      E   +  ++       
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV- 310

Query: 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229
              +   +++T    + D KT+    DD  +  +  +  E+   +
Sbjct: 311 ---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.5 bits (155), Expect = 2e-12
 Identities = 24/197 (12%), Positives = 43/197 (21%), Gaps = 21/197 (10%)

Query: 87  DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143
            +       +G              + AF  D + L       L    D    N      
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 144 ----TLEGPGGGVEWVSWHPRGHIVLAGSEDST-------VWMWNADRAAYLNMFSGHGS 192
                +    G        PR     AG  D             +      +        
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 193 SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252
             +               +   L  ++ K+ +              LT L +SAD    +
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-------VKNNLTDLRLSADRKTVM 330

Query: 253 SGSKDGSVHMVNITTGK 269
               DG ++   +   +
Sbjct: 331 VRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 16/229 (6%), Positives = 49/229 (21%), Gaps = 11/229 (4%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
             +  +       +  V            G  +         +   A + + +  +V ++
Sbjct: 32  SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 91

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG------ 167
               +G+          +   D  +G            +   +       +  G      
Sbjct: 92  GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151

Query: 168 ----SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
                    + +++ +            S      F  D K +   S  +     +    
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210

Query: 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC 272
                +   P+    +               S+ G   + ++       
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 259

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
                 +       +   +            G  +KG   + +      ++   K++++ 
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT--RKVTEVKNNLTD 319

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE 146
           L  S D + +     DG +  +       + T+E
Sbjct: 320 LRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 109 SVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
           S  +  FS  DG L+A     G   I D S   +          + +V       +    
Sbjct: 4   SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIH 60

Query: 168 SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
                  + +++         F  +  +V       +GK     +D   +   + ++G+ 
Sbjct: 61  GTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 226 IHVIRGHPYHTEGLTC 241
             + R         T 
Sbjct: 120 TVIERSREAMITDFTI 135

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-12
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 2/135 (1%)

Query: 85  GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144
           G D        +     +       + SL +   G+ LA G            +   K  
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-NVEVLHVNKPDKYQ 260

Query: 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204
           L      V  + +   G   ++  +D+ +  W     A +       SSV   D + D K
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 205 TICTGSDDATLRVWN 219
            I TGS D    V+ 
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 6/176 (3%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG 149
             W ++      + QGH D  S +  S DG  L +GGLD  V+ WD   G          
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFT 224

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
             +  + + P G  +  G E S V + + ++         H S V    F   GK   + 
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
             D  L  W    G +I   +     +  +    IS D    ++GS D    +  +
Sbjct: 284 GKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 8/223 (3%)

Query: 63  HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL 122
            S   YS   +  D  +       D      I +         H + V ++  S   + +
Sbjct: 8   GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66

Query: 123 ASGGLDGLVQIWDPSSGNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
            +GG  G V++WD S    K  +           +      P G  ++ G E ST+ +W+
Sbjct: 67  YTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
                         S+  C        +    S  +           N  ++R    HT+
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 184

Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCV 280
           G +C+ IS D T   +G  D +V   ++  G+    +   + +
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 5e-09
 Identities = 46/267 (17%), Positives = 77/267 (28%), Gaps = 47/267 (17%)

Query: 49  NTEQPDDSTHIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--- 104
               P  +  I +  H + V +V  S      V TGG       W I+     S +    
Sbjct: 35  GPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92

Query: 105 --GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPR 160
                + + S     DG  L  GG    + IWD ++   +              ++  P 
Sbjct: 93  CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152

Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
             +  +   D  + +W+      +  F GH    +C D + DG  + TG  D T+R W+ 
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212

Query: 221 KSGE-------------------------------------NIHVIRGHPYHTEGLTCLT 243
           + G                                      N         H   +  L 
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272

Query: 244 ISADSTLALSGSKDGSVHMVNITTGKV 270
            +      +S  KD  ++      G  
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGAS 299

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 23/245 (9%), Positives = 72/245 (29%), Gaps = 29/245 (11%)

Query: 56  STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------GHKDS 109
           + +    H  +++SV+   +      +  GD     W     D  +          HK  
Sbjct: 6   TANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 110 VSSLAF-------SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           +  +         + +  L+A+    G +  +  +  +    +      +          
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
             L     +   + +        + +    +     F P      + + + +  +    +
Sbjct: 123 WALKWGASNDRLLSH------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282
                 +      ++  T + IS    +A +G  +G+V +  ++T +          +  
Sbjct: 177 ------VESPMTPSQFATSVDISERGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMIN 229

Query: 283 DLDFV 287
           + + +
Sbjct: 230 NSNSI 234

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 24/204 (11%)

Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD------PSSGNLKCTLEGPGGGVEW 154
                     +S+  S  G L+A+G  +G VQI +        +   + ++      +  
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 155 VSWHPRGHIVLAGSEDSTVWMW----------------NADRAAYLNMFSGHGSSVTCGD 198
           V + P+G ++    + ++                        +        H S V    
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP-YHTEGLTCLTISADSTLALSGSKD 257
           F   G+T+C+   D  LR W+ K+ E I  +  H          L +             
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF 356

Query: 258 GSVHMVNITTGKVCCLNFQYTCVA 281
               +       +     +  C  
Sbjct: 357 DVKFLKKGWRSGMGADLNESLCCV 380

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
              +    +     H   V SL+F+  G+ L S G DG ++ WD  +     TL      
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 152 VEW----VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
           +E     ++    G  +         ++    R+               G      +++C
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS---------------GMGADLNESLC 378

Query: 208 TGSDDATLRVW 218
               D ++R +
Sbjct: 379 CVCLDRSIRWF 389

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.4 bits (150), Expect = 8e-12
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 2/181 (1%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVS 111
            DD +   +G       V        L              +         +       +
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212

Query: 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
              F  D Q  A+  L       D  +G            + +                +
Sbjct: 213 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
            +  ++  +   +   +    +  C  F   G  +  G     L V+NP + E +  I+ 
Sbjct: 273 RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 232 H 232
            
Sbjct: 332 P 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.4 bits (142), Expect = 9e-11
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 9/169 (5%)

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRG-HIVLAGSED 170
            A     + +        + + D +S  +  +   P   G       P      +  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 171 STVWMWNADR------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
             ++  + D       A   ++    G S+     +PDGK +    +       +     
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 225 N-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC 272
             + V                       +  + DGS+++      K+  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 24/252 (9%), Positives = 50/252 (19%), Gaps = 41/252 (16%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---------- 104
           + + +       +YS A SP    + AT     +     + +                  
Sbjct: 79  NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138

Query: 105 ---GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---------- 151
                   V  +  + DG L  +G     + +                 G          
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198

Query: 152 ------------VEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAAYLNMFSGHGSSVTCGD 198
                            +                   +      +   F+        G 
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258

Query: 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
            +P       G  +  L  ++ K  + I              C+           G    
Sbjct: 259 RSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 259 SVHMVNITTGKV 270
            + + N  T + 
Sbjct: 314 DLAVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 8e-08
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 49  NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD 108
           + +     T  F+  ++  ++   SP D   +           + + Q            
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA--KYDLKQRKLIKAA-NLDH 292

Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156
           +   +AF   G  L  GG    + +++P +      ++ PGG +   +
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.3 bits (103), Expect = 8e-06
 Identities = 16/178 (8%), Positives = 38/178 (21%), Gaps = 19/178 (10%)

Query: 76  DATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ-LLASGGLDGLVQI 133
               +      +      +             K    +   + D +         G +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 134 WDPSSGNLKCTL------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AY 183
            D  +                G  +   +  P G  V A    +     +          
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL-------RVWNPKSGENIHVIRGHPY 234
            +   G  +        P    +   +DD +L          + K+G+    +    +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.0 bits (146), Expect = 2e-11
 Identities = 17/177 (9%), Positives = 44/177 (24%), Gaps = 2/177 (1%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
            D + ++    D       + T          + + +        W         +    
Sbjct: 144 RDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY 203

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
               D            +   D  +G +            + S         A    + +
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGAYNVL 262

Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
             ++ ++ A +        S    + + DG T+  G     L  ++ ++ E    + 
Sbjct: 263 ESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 60  FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
                   +S A +P            +    + + +      +     S  S+  S DG
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDG 291

Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158
             +  GG  G +  +D  +   K  ++ PG     ++  
Sbjct: 292 STVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 18/161 (11%), Positives = 39/161 (24%), Gaps = 16/161 (9%)

Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRG-HIVLAGSEDSTVWMW 176
             + +      + + D     +   +     G         P G       ++  ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 177 NADRAAYLNMFSGH-----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--- 228
           +      L             S+     +PDGKT+        L + + +          
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 229 -----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264
                 R        +T L  + D +      +D  V    
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 24/256 (9%), Positives = 51/256 (19%), Gaps = 38/256 (14%)

Query: 47  AENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--- 103
                               ++  A SP   TL                Q    +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 104 -------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-- 154
                        ++ LA++ DG  L   G D  V   +  +      ++          
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

Query: 155 --VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM------------------FSGHGSSV 194
             ++   +       +        + D A                               
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
                 P             L  ++ +   +I  +            + +S D +    G
Sbjct: 244 FSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLG 297

Query: 255 SKDGSVHMVNITTGKV 270
              G +   +  T + 
Sbjct: 298 GALGDLAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 15/195 (7%), Positives = 36/195 (18%), Gaps = 3/195 (1%)

Query: 1   MNNPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIF 60
                      D  +++    D+          + D              +         
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
           S                    T                   E++       S A +    
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253

Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180
                    +++ +D         +         V+    G  V  G     +  ++A+ 
Sbjct: 254 RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 181 AAYLNMFSGHGSSVT 195
                     G++  
Sbjct: 311 LEKKGQVDLPGNASM 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNIT 266
             +    L V + +      VI              ++        + +K  S+  +++ 
Sbjct: 6   APARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64

Query: 267 TGKVCC 272
           TG+   
Sbjct: 65  TGETLG 70

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 14/166 (8%), Positives = 35/166 (21%), Gaps = 9/166 (5%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKD--SVSSLAFSMDGQ-LLASGGLDGLVQIWD 135
            +      DK       +      I       +      +  G+   A+      +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 136 PSSGNLKCTLEGPGGGVEWVSWH------PRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189
             +G     ++         S            + +  S           +   + ++  
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
              S       P   T+   + D +      +    +    G    
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE 168

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 6e-11
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 84  GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
            GD     W  +  ++   + GHK  ++        +L+ SG  D  +++WD   G   C
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECG--AC 210

Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY---------LNMFSGHGSSV 194
                G              +++G+ D  + +W+   A           L     H   V
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 195 TCGDFTPDGKTICTGSDDATLRVWN 219
               F  D   I + S D T+ +W+
Sbjct: 271 FRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 4e-10
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 14/178 (7%)

Query: 91  FWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150
                       + GH+ +V+ + F     + ASG  D  +++W+ S+     TL G   
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKR 179

Query: 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210
           G+       R  +V++GS D+T+ +W+ +  A L +  GH   V C  F      I +G+
Sbjct: 180 GIAC--LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGA 235

Query: 211 DDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHM 262
            D  ++VW+  +  +     G         H+  +  L    D    +S S D ++ +
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 8e-10
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 7/187 (3%)

Query: 101 SEIQGHKDSVSS-LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
             I    ++         D Q + SG  D  ++IWD ++   K  L G  G V  + +  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
           R    +  +  S   +   D      + +             +   + T S D ++ VW+
Sbjct: 66  R----VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279
             S  +I + R    H        +  D    +S S D ++ + N +T +       +  
Sbjct: 122 MASPTDITLRRVLVGHRA--AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 280 VAYDLDF 286
               L +
Sbjct: 180 GIACLQY 186

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 11/225 (4%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
           H  S  S  VY +     D   + +G  D+    W  N  +    + GH  SV  L +  
Sbjct: 9   HCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-- 63

Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           D +++ +G  D  V++WD ++G +  TL      V  + ++    +  +      VW   
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
           +            G          D K I + S D T++VWN  + E +  + GH     
Sbjct: 124 SPTDIT-LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG-- 180

Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAY 282
                 +     L +SGS D ++ + +I  G    +   +  +  
Sbjct: 181 ---IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 11/90 (12%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---------IQG 105
           +              V C   D   + +G  D K   W +                 +  
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265

Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
           H   V  L F  D   + S   D  + IWD
Sbjct: 266 HSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-10
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 3/90 (3%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE---GPGGGVEWVSWHPR 160
           Q  KD +S +       LL     DG + ++          L         +   ++   
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190
             + +         +      +       +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTN 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 9/96 (9%), Positives = 22/96 (22%)

Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243
           + +       ++     P    +   S D +L V+          +     +   L C  
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279
              ++ L +         +     G           
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 14/121 (11%), Positives = 27/121 (22%), Gaps = 16/121 (13%)

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------------EGPGGGVEWVSWH 158
               + +  A   +DG V +                                 V  + + 
Sbjct: 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260

Query: 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
           PR   +     D  +  WN      +  F+                 +C  + D T +  
Sbjct: 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV-KIACSDNILCLATSDDTFKTN 319

Query: 219 N 219
            
Sbjct: 320 A 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 27/281 (9%), Positives = 58/281 (20%), Gaps = 70/281 (24%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLA 114
            I     D +  +   P   +L+     D     ++ +      ++     +K  +    
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 115 FSMDGQLLASGG--------------------------------------------LDGL 130
           F  +  L    G                                             DGL
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------EDSTVWMWN----ADR 180
           +++ DP +                   +    +    S       +S V  +      D 
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI------------HV 228
              +                 + +     S D  + V       +              +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
                     +  +  S       +   DG +   N+ T K
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
           +         +       V+S+ FS   + L + G DG++  W+  +             
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNE 294

Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194
              V      +I+   + D T         A       + SS+
Sbjct: 295 DSVVKIACSDNILCLATSDDTFKTNA----AIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 23/163 (14%)

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG----VEWVSWHPRGHIVLAGSEDST 172
            +   L  G  +  VQ +               G      +              S D  
Sbjct: 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217

Query: 173 VWMWNADRAA---------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217
           V +   D                       +     V   +F+P  K + T   D  +  
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277

Query: 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
           WN ++ + I             + + I+    +    + D + 
Sbjct: 278 WNLQTRKKIKNFAKFN----EDSVVKIACSDNILCLATSDDTF 316

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 21/189 (11%), Positives = 48/189 (25%), Gaps = 27/189 (14%)

Query: 63  HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL 122
                     S   A+L A+                 A        S  +   +  G L+
Sbjct: 172 PGAAATHYLGSC-PASLAASDLAAAPAAAGI----VGAQCTGAQNCSSQAAQANYPGMLV 226

Query: 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS----------- 171
            +     L      +   +K  ++G   G +  ++   G  ++A  +++           
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286

Query: 172 --------TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC--TGSDDATLRVWNPK 221
                         A         S +G          DG +      +    L +++  
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345

Query: 222 SGENIHVIR 230
           S ++   + 
Sbjct: 346 SDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 16/188 (8%), Positives = 34/188 (18%), Gaps = 26/188 (13%)

Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW--DPSSGNLKCTLEGPGGGVEWVSWHPRG 161
            G        A S    +       G  + W      G       G    +        G
Sbjct: 19  DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSG 76

Query: 162 HIVLA----------GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD-------FTPDGK 204
                          G     V +++      +       +                   
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 205 TI-CTGSDDATLRVWNPKSGENIHVIRG----HPYHTEGLTCLTISADSTLALSGSKDGS 259
            +       +     +     +  + +     H +     T    S  ++LA S      
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196

Query: 260 VHMVNITT 267
                +  
Sbjct: 197 AAAGIVGA 204

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 24/188 (12%), Positives = 44/188 (23%), Gaps = 12/188 (6%)

Query: 96  QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
            G + S              S      A G     V+++DP +      +E P      V
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 156 SWHPRG--------HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
                          ++      S     +   A+   +                  T  
Sbjct: 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHY 179

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALSGSKDGSVHMVNIT 266
            GS  A+L   +  +      I G      +  +     A+    L  +   S+   +I 
Sbjct: 180 LGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 267 TGKVCCLN 274
                   
Sbjct: 240 AAGATMKA 247

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 6e-10
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRG 161
             GH  ++++L+ S DG+ L S   +G +  WD S+G       +     +  +    +G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 162 HIVLAGSEDSTVWMW 176
            +     +D    + 
Sbjct: 68  DLFTVSWDDHLKVVP 82

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.5 bits (126), Expect = 6e-09
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
             GH  ++T    + DGKT+ +   +  +  W+  +G +  V      H   +T +  ++
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--HATMITGIKTTS 65

Query: 247 DSTLALSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286
              L      D    +    +G            +  L  
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 9e-07
 Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 2/140 (1%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFS 116
            +  GH+  + +++ S  D   + +   +     W I+ G         H   ++ +  +
Sbjct: 6   QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
             G L      D L  +    SG             + +         +A +        
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 177 NADRAAYLNMFSGHGSSVTC 196
            +         S + S V  
Sbjct: 125 YSHGKLTEVPISYNSSCVAL 144

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
            VSW P    +  GS D++V +WN ++ +   + +   H  S        +  TI +   
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 212 DATLRVWN 219
           D+ ++ WN
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 8e-06
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 1/104 (0%)

Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCG 197
           G++     G    +  +S    G  + +   +  +  W+        +F   H + +T  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
             T  G       DD    V    SG +      +   ++ L  
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
           + +            +     + N    A+ N ++ H + V C  ++PD   + TGS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266
           ++ VWN     +  +I    +    +  + I  + T  +S  +D ++   N+ 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 123 ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS--WHPRGHIVLAGSEDSTVWMWN 177
           A+G LD  V +W+ +  +    +      +  V+         +++  +DS +  WN
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 81  ATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
           ATG  D+    W +N+      I    H  S  +    ++   + S G D  ++ W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-09
 Identities = 39/280 (13%), Positives = 77/280 (27%), Gaps = 62/280 (22%)

Query: 48  ENTEQPDDSTHIFSGH-SDEVYSVACSPT-DATLVATGGGD--------DKGFFWRINQG 97
           ++ +        F+GH S  V +V  SP   +  + +G                    + 
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 98  DWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
           +  SE Q     +S +++  +G+ L   G   D         SGN    + G    +   
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----GHGSSVTCGDFTP---------- 201
                  +      D    ++        +         GS V   +F+P          
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 202 ------------------------------------DGKTICTGSDDATLRVWNPKSGEN 225
                                               D +   T   DAT+RVW+  + + 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
           +                 ++  +   +S S DG+++   +
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 9/143 (6%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTV---WMWNADRAAYLNMFSGHGSS-VTCGDFTP--DG 203
                +S+ P  + +      S           +   +  F+GHGSS VT   F+P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263
           + +C+G +   + VW     +  + +  +      +    IS    ++          + 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD---ISWDFEGRRLCVVG 134

Query: 264 NITTGKVCCLNFQYTCVAYDLDF 286
                    +++       ++  
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSG 157

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 6e-06
 Identities = 33/201 (16%), Positives = 56/201 (27%), Gaps = 16/201 (7%)

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGH-KDSVSSLAFS- 116
           S   +    ++  PT   +    G                   +  GH    V+++ FS 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 117 -MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP--------GGGVEWVSWHPRG--HIVL 165
               Q L SG   G V +W  +      ++E           G +  +SW   G    V+
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 166 AGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224
               D+     + D    L   S        C           T  DD ++  +     +
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 225 NIHVIRGHPYHTEGLTCLTIS 245
                R H      +  +  S
Sbjct: 194 FSASDRTHHKQGSFVRDVEFS 214

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 16/153 (10%)

Query: 99  WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS- 156
              +    ++  + L++      +A   G    V+  D     +   ++  G G   V+ 
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 157 --WHPR--GHIVLAGSEDSTVWMWNAD--------RAAYLNMFSGHGSSVTCGDFTPDGK 204
             + P      + +G E   V +W                + F      ++   +  +G+
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 205 T--ICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
              +     D      +  SG ++  + GH   
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR 161

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 3/153 (1%)

Query: 53  PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSS 112
                 ++  ++ +++ +  S  DA  +       +       +     ++  H+     
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263

Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG--HIVLAGSED 170
                             V + D  +G      E  G  ++ ++        +    + D
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD 322

Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
            T+++ +A+    L   +  G           G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 4e-08
 Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 4/153 (2%)

Query: 11  DDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSV 70
              R V+   +  IH++ +   D   +   +                   + H       
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264

Query: 71  ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLD 128
                                     G+  ++ +   + + S+  S D +  L A    D
Sbjct: 265 LLVD-QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGD 322

Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161
             + I D  SG    ++   G G + ++    G
Sbjct: 323 KTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 26/240 (10%), Positives = 53/240 (22%), Gaps = 35/240 (14%)

Query: 35  PDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI 94
           P                  D         +            +      G +        
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-- 184

Query: 95  NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGV 152
                       +  ++  A+S     L      G +   D SSG+ K    +E      
Sbjct: 185 ---HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241

Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
               W P G   +A                                           +  
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIYL----------------------LVDQRDEWRHKTAS 279

Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL--SGSKDGSVHMVNITTGKV 270
             + V + K+GE +            +  + +S D    L    + D ++++ +  +G+ 
Sbjct: 280 RFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 31/216 (14%), Positives = 59/216 (27%), Gaps = 21/216 (9%)

Query: 78  TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA----------SGGL 127
              A      + F      G     I G    + +   + DG  +A           G  
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGER 76

Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA---------GSEDSTVWMWNA 178
              V+++DP +      +E P      V  +P    +            S    V + + 
Sbjct: 77  TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 136

Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238
           +  A+  M                    C     A +      + E  H    HP     
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN 274
           +     S  +   +  +  G +H +++++G    L 
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 232

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 20/158 (12%), Positives = 42/158 (26%), Gaps = 8/158 (5%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
              T     +      +  +  + +     +V     S  G+ L   G DG V + D   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGS 192
                  E                       +AG+       + + +      + S  G 
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152

Query: 193 SVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVI 229
           +    ++ P+ +      S      + N K    I ++
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 22/222 (9%), Positives = 48/222 (21%), Gaps = 13/222 (5%)

Query: 61  SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-----------GHKDS 109
           S       S      D   +A      +         +                   +  
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164

Query: 110 VSSLAFSMDGQ-LLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
           V+++  S      + +    G + + D +   NLK T       +            +  
Sbjct: 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 224

Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
           +      +    +   L      G          +      G   AT  + +        
Sbjct: 225 ANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT 284

Query: 228 VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
              GHP +   +     +         +   S ++    T  
Sbjct: 285 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 9/113 (7%), Positives = 28/113 (24%), Gaps = 4/113 (3%)

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
             +   +   + + +        +    G +V     +  G+ +     D  + + +   
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92

Query: 223 GENIHV--IRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVCC 272
            E   V  I+         T      +               +++  T +   
Sbjct: 93  KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 15/134 (11%)

Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164
            +   +     ++ G  L          ++  ++ N       P   +           +
Sbjct: 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------PEAEISGSVAVFDIKAM 343

Query: 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-----CTGSDDATLRVWN 219
                D           A +   +     V  G+F  DG  +          ++ L V +
Sbjct: 344 TGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400

Query: 220 PKSGENIHVIRGHP 233
            K+ E  HVI+   
Sbjct: 401 DKTLELKHVIKDER 414

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 199 FTPDGKTI--CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256
              D + +   T  D   + + +  + E   V+         +    +SA         +
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR 81

Query: 257 DGSVHMVNITTGK 269
           DG V+M+++   +
Sbjct: 82  DGKVNMIDLWMKE 94

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
           G    +   P G  +   +  ++V+           +++ H    T    +P G    +G
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 210 SDDATLRVWNPKSGENIHVIRGHPYH 235
                +R+W+     +I       + 
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFS 102

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 3e-08
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 92  WRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151
                 D + +   H  SV  L +S DG  +AS   D  ++IW+ ++  ++ T+      
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 152 VEWV-SWHPRGHIVLAGSEDSTVWMWNAD 179
            +           +++ S +  +   N +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 4e-08
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
              +   G        +                   H  SV    ++PDG  I + S D 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
           T+++WN  + +    I       +    L I       +S S +G ++ VN 
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIED--QQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 6e-07
 Identities = 14/111 (12%), Positives = 25/111 (22%), Gaps = 2/111 (1%)

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
              +  +P    +    G     +   +           H    +    S  G   ASG 
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSV--YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
           + G V+IWD +          P                   +       + 
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 4/93 (4%)

Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
                 TP G  I   +   ++      S  +  +   H   +   T    S       S
Sbjct: 20  AVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEH---SHQTTVAKTSPSGYYCAS 75

Query: 254 GSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDF 286
           G   G+V + + T                  D 
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 72  CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGGLDGL 130
               D T +A+   D     W +        I          L      Q L S   +G 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 131 VQIWDP 136
           +   +P
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 10/223 (4%)

Query: 57  THIFSGHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLA 114
           T I++ HS +      SP      A+G      + +          + I      V  ++
Sbjct: 51  TEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109

Query: 115 FSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
           +  + + +A+ G             +  +                   R   +++GS+D+
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169

Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
           TV ++      + + F  H   V    + PDG    +   D T+ ++N   G    V   
Sbjct: 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229

Query: 232 HPYHT----EGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
                      +  LT S D T   S S D ++ + N+ T KV
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 272

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 7e-08
 Identities = 28/217 (12%), Positives = 52/217 (23%), Gaps = 11/217 (5%)

Query: 79  LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
              T     +      +       I     +V     S  G+ L   G D  + + D  +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 139 GNLKCTLE-----GPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGS 192
                  E                       +AG+       + + +      + S  G 
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 193 SVTCGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251
           +V    + P+ +      S +    + N K    + ++         LT  +I A   LA
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSIGAAPFLA 210

Query: 252 -LSGSKDGSVHMVNITTGKVCCLNFQYTCVAYDLDFV 287
                      M          +          L  V
Sbjct: 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 8e-07
 Identities = 10/112 (8%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
                     +   +   + + + D    + +    G +V     +  G+ +     DA 
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDAR 84

Query: 215 LRVWNPKSGENIHV--IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264
           + + +  + E   V  I+         +      +    ++G+       + 
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 29/203 (14%)

Query: 55  DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
              +  +  ++          D  L A           R      A+ +      V S +
Sbjct: 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-----GANFVHPKYGPVWSTS 271

Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-------G 167
              DG +   G        +          L+G GGG  ++  HP+   +          
Sbjct: 272 HLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 328

Query: 168 SEDSTVWMWNAD---------RAAYLNMFSGHGSSVTCGDFTPDGKTI-----CTGSDDA 213
               +V +++             A           V   ++   G  +        +D +
Sbjct: 329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 388

Query: 214 TLRVWNPKSGENIHVIRGHPYHT 236
            L V + K+ +   V++     T
Sbjct: 389 ALVVVDDKTLKLKAVVKDPRLIT 411

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGP 148
                 +    + I        +    ++  L+A+G LD  + I+       +   L   
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
             GV  + W     +V +   D+ +  WN
Sbjct: 258 KDGVNNLLWETPSTLV-SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 58  HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFS 116
                             +  LVATG  D   F + + +       +  HKD V++L + 
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267

Query: 117 MDGQLLASGGLDGLVQIWD 135
                L S G D  ++ W+
Sbjct: 268 TPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
                    ++             A R + +N  S   +     +   +   + TGS D 
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 214 TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
            + +++ K   + I  +     H +G+  L     STL  S   D  +   N+
Sbjct: 238 NIFIYSVKRPMKIIKALNA---HKDGVNNLLWETPSTLV-SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
           I GH   +++L  +     L SG  DG +  W  SS       +     +  +       
Sbjct: 9   ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQE 59

Query: 163 IVLAGSEDSTVWMWN 177
                 +D+      
Sbjct: 60  YSSISWDDTLKVNGI 74

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 29/226 (12%), Positives = 74/226 (32%), Gaps = 23/226 (10%)

Query: 54  DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
           D+     SGH+  + ++  +P     + +G  D +   W       +S  Q H + + SL
Sbjct: 3   DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSL 52

Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173
             S   +  +          WD +      T    G   +  S +  G   +  ++D  +
Sbjct: 53  DNSKAQEYSSI--------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLL 104

Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
            + +       ++      S            +  G+     ++ + +   ++       
Sbjct: 105 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164

Query: 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279
                 + ++IS   T   +G   G + + ++ + +V    + +  
Sbjct: 165 P-----SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT 205

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 3/120 (2%)

Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
           + +A  E   + +WN +    L +         V     +PD + +      +  +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQYTC 279
               +              LT ++          GS +     V      +         
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNIT 266
             S+   + V +  S +    I              IS D + + ++ +    V +++  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 267 TGKVCCLNFQYTC 279
           T  V       + 
Sbjct: 63  TNNVIATVPAGSS 75

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 90  FFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP 148
                      + I    D  + +A + DG+ +  +      V + D ++  +  T+   
Sbjct: 227 SMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA-- 283

Query: 149 GGGVEWVSWHPRGHIVLAGS 168
                 V  +P       GS
Sbjct: 284 ------VGKNPYASGQFIGS 297

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDD 212
            V+       V    +              +      G        TPDGK +    S  
Sbjct: 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC 265

Query: 213 ATLRVWNPKSGENIHVI 229
            T+ V +  +      +
Sbjct: 266 NTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGE 224
           A SE   + + +             GS+      +PDG  +    +    + + +  +  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 225 NIHVIRGHPYH 235
            I  +      
Sbjct: 66  VIATVPAGSSP 76

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 26/215 (12%), Positives = 52/215 (24%), Gaps = 29/215 (13%)

Query: 67  VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG 126
           + +     T     +T    ++         +    +    +     A    G     G 
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGD 236

Query: 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186
              +  +           +  P       +     + +  G    TV +   D+    ++
Sbjct: 237 -SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK--LDDL 293

Query: 187 FSGHGSSVTC-------------GDFTPDGKTICTGSDDATLRVWNPK------SGENIH 227
           F                        F   G    T   D+ +  WN        +G+ ++
Sbjct: 294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353

Query: 228 VIRG------HPYHTEGLTCLTISADSTLALSGSK 256
            IR        P H       +  AD    +  SK
Sbjct: 354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.68
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.39
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.34
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.3
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.87
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.13
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.89
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.88
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.83
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.63
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.57
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.44
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.38
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.38
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.31
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.19
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.38
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.25
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.13
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.92
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.73
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.03
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.97
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.13
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	93.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.97
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.76

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-40  Score=267.76  Aligned_cols=220  Identities=22%  Similarity=0.321  Sum_probs=199.5

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee--EeeccccCcEEEEEEecCCCEEEEEeC--CC
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGL--DG  129 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg  129 (288)
                      ....+.+.+|...|++++|+| ++++||+|+.||+|+||++.+....  ..+..|..+|.+++|+|++++|++++.  +.
T Consensus        48 ~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~  126 (311)
T d1nr0a1          48 LTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER  126 (311)
T ss_dssp             SSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred             CceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccc
Confidence            466678899999999999999 7899999999999999999887543  557789999999999999999999875  45


Q ss_pred             eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      .+++|++.+++....+..|...|.+++|+|+++ .|++|+.||.|++||+++++....+..|..+|+++.|+|++++|++
T Consensus       127 ~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccc
Confidence            699999999999888999999999999999887 4888999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCC----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++.|+.|++||+.++.....+...    ..|...|++++|+|++++|++|+.||.|+|||++++++++.+
T Consensus       207 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            999999999999998887776532    236788999999999999999999999999999999999877

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-38  Score=256.41  Aligned_cols=232  Identities=22%  Similarity=0.392  Sum_probs=204.1

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ...+..++|+||.++|++++|+| ++.+||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++++|+.|+.+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             cceeeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            44567789999999999999999 88899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCc----eeEEe-----------------------------------------ccCCCCEEEEEEcCCCCEEEE
Q 023018          132 QIWDPSSGN----LKCTL-----------------------------------------EGPGGGVEWVSWHPRGHIVLA  166 (288)
Q Consensus       132 ~i~d~~~~~----~~~~~-----------------------------------------~~~~~~i~~~~~~~~~~~l~~  166 (288)
                      ++|+.....    ....+                                         ..+...+....+.+.+.++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            999865431    11111                                         122345777888888999999


Q ss_pred             ecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC
Q 023018          167 GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (288)
                      ++.|+.|++||+++++++..+.+|..+|++++|+|++++|++|+.||.|++||++.......+... .+...+.+++|+|
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~  280 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-NIICGITSVSFSK  280 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-TCCSCEEEEEECS
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-cccCceEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999988877766533 2667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEec----ceEEEEEeec
Q 023018          247 DSTLALSGSKDGSVHMVNITTGKVCCLNF----QYTCVAYDLD  285 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t~~~~~~~~----~~~~~~~~~d  285 (288)
                      ++.+|++|+.||.|++||+.+++++..+.    .+.+++|+|+
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            99999999999999999999999999884    5677778776

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=250.91  Aligned_cols=229  Identities=21%  Similarity=0.379  Sum_probs=202.6

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec---------------
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---------------  117 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~---------------  117 (288)
                      +..+.+.|+||.++|++++|+| ++.+||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|               
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~   84 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK   84 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred             CCCccEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence            3445678999999999999999 788999999999999999998887777766666666655554               


Q ss_pred             ---------------------------CCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC
Q 023018          118 ---------------------------DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED  170 (288)
Q Consensus       118 ---------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  170 (288)
                                                 ++..+++++.|+.+++|++.+++....+..|...+.+++|+|++.+|++++.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence                                       45567778888999999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCcccEEEEeeccCCCeEEEEEcCCC--------------------CEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG--------------------KTICTGSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                      +.|++|++.+++.+..+..|...+.++.|+|++                    .++++++.|+.|++||+++++.+..+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            999999999999999999999999999998754                    478999999999999999999988888


Q ss_pred             CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      .   |...|.+++|+|++++|++|+.||.|++||+.+++++..+    ..+.+++|+|+
T Consensus       245 ~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~  300 (317)
T d1vyhc1         245 G---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT  300 (317)
T ss_dssp             C---CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred             C---CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            7   7789999999999999999999999999999999999887    45677778775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.7e-37  Score=253.67  Aligned_cols=220  Identities=15%  Similarity=0.180  Sum_probs=188.5

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe--eeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN  140 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  140 (288)
                      +..||+|++|+| ++.+||+|+.||.|+||++.+++  .+..+.+|.++|++++|+|++++|++|+.|++|+|||+.++.
T Consensus         6 ~~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            357899999999 88899999999999999998775  566788999999999999999999999999999999998775


Q ss_pred             ee--EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccE----EEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          141 LK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       141 ~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ..  ..+..|...|.+++|+|+++.|++++.++.|++|++.....    ......|...|.+++|+|++++|++|+.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            44  34556788899999999999999999999999998866532    3334568889999999999999999999999


Q ss_pred             EEEEeCCCCc------------------eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--
Q 023018          215 LRVWNPKSGE------------------NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN--  274 (288)
Q Consensus       215 i~i~d~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~--  274 (288)
                      |++|++....                  ......   .|...|.+++|+|++++|++++.||.|++||+.+++.+..+  
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeecc---CccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            9999986432                  122222   37788999999999999999999999999999999999877  


Q ss_pred             --cceEEEEEeecc
Q 023018          275 --FQYTCVAYDLDF  286 (288)
Q Consensus       275 --~~~~~~~~~~df  286 (288)
                        .++.+++|+++-
T Consensus       242 ~~~~v~s~~fs~d~  255 (371)
T d1k8kc_         242 ETLPLLAVTFITES  255 (371)
T ss_dssp             SSCCEEEEEEEETT
T ss_pred             ccccceeeeecCCC
Confidence              457788888763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=244.52  Aligned_cols=223  Identities=17%  Similarity=0.249  Sum_probs=201.6

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCC--eeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG--DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .....+|.+.|.+++|+| ++.+|++|+.||.|++|++...  +....+..|...+.+++|+|++.++++++.++.|++|
T Consensus        90 ~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             EEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            334568999999999999 7889999999999999998754  4566777899999999999999999999999999999


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      ++.+++.......|...+.+++|++++..+++++.++.|++||+++++.+..+. +..+|.+++|+|++++|++++.++.
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccc
Confidence            999999998889999999999999999999999999999999999998887765 7889999999999999999999999


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      |++||++++.......    |...|.+++|+|++++|++++.||.|++||+.+++++..+   ..+.+++|+|+
T Consensus       248 i~i~d~~~~~~~~~~~----~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d  317 (337)
T d1gxra_         248 VEVLHVNKPDKYQLHL----HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD  317 (337)
T ss_dssp             EEEEETTSSCEEEECC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTT
T ss_pred             cccccccccccccccc----cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCC
Confidence            9999999887654433    7889999999999999999999999999999999998877   56778888875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=246.12  Aligned_cols=223  Identities=19%  Similarity=0.346  Sum_probs=197.7

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----eEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      .++.+ +|..+|++++|+| ++++||+|+ ||.|+|||+.+...     ......|...|.+++|+|++++|++|+.||.
T Consensus        44 ~~~~~-~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             EEEEC-CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            34444 7999999999999 888999987 79999999976432     2234468899999999999999999999999


Q ss_pred             EEEEeCCCC--ceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE
Q 023018          131 VQIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT  208 (288)
Q Consensus       131 i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~  208 (288)
                      |++||+...  +....+..|...+..++|+|++.++++++.++.|++|+++++++......|...+.+++|++++..+++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998754  455667788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       209 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                      ++.|+.|++||+++++.+..+.    +...|.+++|+|++.+|++++.||.|++||+++++.....   ..+.+++|+|+
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccceeecccc----cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCC
Confidence            9999999999999998887776    6788999999999999999999999999999999887665   56788888876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-35  Score=238.28  Aligned_cols=215  Identities=15%  Similarity=0.218  Sum_probs=179.7

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...+++.||.++|++++|+| ++++|++|+.||+|++||+.+++.+..+. .|...|++++|+|++.+ ++++.|+.+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             ccceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            45689999999999999999 78899999999999999999998888874 68999999999999874 56677999999


Q ss_pred             EeCCCCce-----e----------------------------EEe-------ccCCCCEEEEEEcCCCCEEEEecCCCeE
Q 023018          134 WDPSSGNL-----K----------------------------CTL-------EGPGGGVEWVSWHPRGHIVLAGSEDSTV  173 (288)
Q Consensus       134 ~d~~~~~~-----~----------------------------~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i  173 (288)
                      |+......     .                            ..+       ......+.+++|+|++++|++|+.+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98643210     0                            000       0112357889999999999999999999


Q ss_pred             EEEECCcccEEE-EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          174 WMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       174 ~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                      ++||+++++... ....|..+|++++|+|++++|++++.++.|++||+.++...........|..+|++++|+|++.+|+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            999998776543 3446889999999999999999999999999999988776655555555888999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCcEE
Q 023018          253 SGSKDGSVHMVNITTGKVC  271 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~  271 (288)
                      +|+.||.|++||+.+++..
T Consensus       241 sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             EEETTSCEEEEETTCTTSC
T ss_pred             EEcCCCEEEEEECCCCCcc
Confidence            9999999999999987543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-35  Score=238.27  Aligned_cols=218  Identities=18%  Similarity=0.219  Sum_probs=192.5

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK  142 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  142 (288)
                      +.+.+..++++| ++..||.++ ++.|.+|++.+......+.+|...|++++|+|++++||+|+.||+|+|||+.++...
T Consensus        16 ~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          16 ARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            445667899999 666777765 467999999999999999999999999999999999999999999999999887643


Q ss_pred             --EEeccCCCCEEEEEEcCCCCEEEEecC--CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE-EEEEeCCCeEEE
Q 023018          143 --CTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGSDDATLRV  217 (288)
Q Consensus       143 --~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~-l~~~~~dg~i~i  217 (288)
                        ..+..|..+|.+++|+|++++|++++.  +..+++|++.+++....+.+|...|++++|+|++++ |++|+.||.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence              457788999999999999999999876  456999999999999999999999999999998885 788999999999


Q ss_pred             EeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-----------cceEEEEEeec
Q 023018          218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN-----------FQYTCVAYDLD  285 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~-----------~~~~~~~~~~d  285 (288)
                      ||+++++....+..   |..+|+++.|+|++++|++++.||.|++||+.+++.+..+           ..+.+++|+|+
T Consensus       174 ~d~~~~~~~~~~~~---~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         174 FEGPPFKFKSTFGE---HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             EETTTBEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             cccccccccccccc---ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            99999988888776   7889999999999999999999999999999999988776           24678888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-35  Score=244.04  Aligned_cols=218  Identities=26%  Similarity=0.430  Sum_probs=171.9

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeec------------------cccCcEEEEEEecCC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ------------------GHKDSVSSLAFSMDG  119 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~  119 (288)
                      +...+|++.|+|++|+| ++++||+|+ |+.|+||++.+++.+..+.                  .|...|++++|+|++
T Consensus        56 ~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~  133 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  133 (388)
T ss_dssp             EEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             EeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence            34447999999999999 788999987 8999999999887766653                  356679999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC--------------------
Q 023018          120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD--------------------  179 (288)
Q Consensus       120 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--------------------  179 (288)
                      ++|++|+.||.|++|+...++....+.+|...|.+++|++++..+++++.++.+++||.+                    
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  213 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS  213 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             Ccceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccccc
Confidence            999999999999999999999888888888888888777766666666666666666554                    


Q ss_pred             ----------------------cccEEEEe-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Q 023018          180 ----------------------RAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR  230 (288)
Q Consensus       180 ----------------------~~~~~~~~-------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  230 (288)
                                            ++..+..+       .+|..+|++++|+|++++|++++.||.|++||++++.......
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence                                  33322222       2467789999999999999999999999999998664332111


Q ss_pred             ---------CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecce
Q 023018          231 ---------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNFQY  277 (288)
Q Consensus       231 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~~~  277 (288)
                               ....|...|.+++|+|++++|++|+.||.|++||+.+++++..+.++
T Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence                     11126788999999999999999999999999999999999988543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-34  Score=229.19  Aligned_cols=209  Identities=28%  Similarity=0.455  Sum_probs=195.0

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeE
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV  131 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  131 (288)
                      ........+.+|...+.++.|+| ++..+++++.|+.+++|++.+++.+..+..|...+.+++|+|++.+|++++.||.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            33455667788999999999999 77889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCC--------------------CEEEEecCCCeEEEEECCcccEEEEeeccC
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRG--------------------HIVLAGSEDSTVWMWNADRAAYLNMFSGHG  191 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  191 (288)
                      ++|++.+++....+..+...+.+++|+|++                    ..+++++.|+.|++|++++++++..+.+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            999999999999999999999999998753                    468999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       192 ~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      .+|.+++|+|++++|++|+.||.|++||+.+++.+..+..   |..+|++++|+|++++|++|+.||+|++||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC---CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999887   778999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-33  Score=234.30  Aligned_cols=208  Identities=19%  Similarity=0.246  Sum_probs=178.4

Q ss_pred             CCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeee--EeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ..+..+++|.++|++++|+| ++++|++|+.|+.|+||++.++...  ..+.+|...|++++|+|++++|++|+.++.|+
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~  120 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS  120 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred             EEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcce
Confidence            35678899999999999999 7889999999999999999877644  44567889999999999999999999999999


Q ss_pred             EEeCCCCcee----EEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcc------------------cEEEEeecc
Q 023018          133 IWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA------------------AYLNMFSGH  190 (288)
Q Consensus       133 i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~  190 (288)
                      +|++......    .....|...|.+++|+|++++|++|+.|+.|++|++...                  ..+.....|
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (371)
T d1k8kc_         121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  200 (371)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             eeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCc
Confidence            9998765432    334567889999999999999999999999999997542                  345566778


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 023018          191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       191 ~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      ...|.+++|+|++++|++++.|+.|++||+.+++.+..+..   |..+|.+++|+|++.+|++| .|+.+++|....
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC---SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeeec---ccccceeeeecCCCCEEEEE-cCCceEEEEeeC
Confidence            89999999999999999999999999999999998888876   67889999999999887765 577777765544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-33  Score=225.93  Aligned_cols=209  Identities=24%  Similarity=0.443  Sum_probs=184.3

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeE--------------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WAS--------------------------  101 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~--------------------------  101 (288)
                      ...+.+..+.+|..+|++++|+| ++.++++|+.|+.+++|+.....    ...                          
T Consensus        85 ~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (340)
T d1tbga_          85 YTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             TTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETT
T ss_pred             ccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccc
Confidence            34567788999999999999999 88899999999999999975421    110                          


Q ss_pred             ---------------eeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018          102 ---------------EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA  166 (288)
Q Consensus       102 ---------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  166 (288)
                                     ....+...+....+.+...++++|+.|+.|++||+++++.+..+..|.+.|++++|+|++++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s  243 (340)
T d1tbga_         164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEE
Confidence                           11224456778888888999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE
Q 023018          167 GSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI  244 (288)
Q Consensus       167 ~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~  244 (288)
                      |+.||.|++|+++....+..+.  .+..++.+++|+|++++|++|+.||.|++||+.+++.+..+.+   |..+|++++|
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---H~~~V~~l~~  320 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---HDNRVSCLGV  320 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEE
T ss_pred             EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC---CCCCEEEEEE
Confidence            9999999999999888776653  4667899999999999999999999999999999999999887   7789999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEE
Q 023018          245 SADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       245 ~~~~~~l~~~~~dg~i~iwd  264 (288)
                      +|++.+|++|+.||.|++||
T Consensus       321 s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=223.50  Aligned_cols=219  Identities=21%  Similarity=0.257  Sum_probs=182.8

Q ss_pred             CCCCeeEeecCC-CCEEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCee--------eEeeccccCcEEEEEEecCCCEE
Q 023018           53 PDDSTHIFSGHS-DEVYSVACSPT-DATLVATGGGDDKGFFWRINQGDW--------ASEIQGHKDSVSSLAFSMDGQLL  122 (288)
Q Consensus        53 ~~~~~~~~~~h~-~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l  122 (288)
                      +......+.+|. .+|++++|+|. ++.+||+|+.||+|+||++..++.        ...+..|.++|.+++|++++++|
T Consensus        51 ~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  130 (325)
T d1pgua1          51 KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL  130 (325)
T ss_dssp             SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcc
Confidence            345667788874 68999999984 568999999999999999875432        22345688899999999999998


Q ss_pred             EEEeC--CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-EEEEecCCCeEEEEECCcccEEEEe---eccCCCeEE
Q 023018          123 ASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTC  196 (288)
Q Consensus       123 ~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~  196 (288)
                      ++++.  ++.+++|+..+++.+..+.+|...|.+++|+|++. ++++++.|+.+++|+++..+....+   ..|...|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~  210 (325)
T d1pgua1         131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  210 (325)
T ss_dssp             EEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEE
Confidence            87764  67899999999999999999999999999999876 4778999999999999887665554   356778999


Q ss_pred             EEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc---CCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          197 GDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS---ADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       197 ~~~~p~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                      ++|+|+ +.+|++++.||.|++||+++++.+..+..   |..++..+.|+   |++.+|++++.|+.|+|||+.+++++.
T Consensus       211 v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         211 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED---DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB---TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeccccceeccccccccceeeeeeccccccccccc---cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            999996 68899999999999999999999888876   44444433443   578999999999999999999999988


Q ss_pred             Ee
Q 023018          273 LN  274 (288)
Q Consensus       273 ~~  274 (288)
                      .+
T Consensus       288 ~~  289 (325)
T d1pgua1         288 KW  289 (325)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-32  Score=220.87  Aligned_cols=223  Identities=22%  Similarity=0.422  Sum_probs=183.0

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      +.++.++|+||.+.|.+ ++++ ++++||+|+.||+|+|||+.+++++.++.+|...|.+++|+|+  +|++|+.|+.++
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             CCCcCEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence            45677899999999864 3455 5679999999999999999999999999999999999999874  899999999999


Q ss_pred             EEeCCCCceeE---------------------------------------------------------------------
Q 023018          133 IWDPSSGNLKC---------------------------------------------------------------------  143 (288)
Q Consensus       133 i~d~~~~~~~~---------------------------------------------------------------------  143 (288)
                      +|+........                                                                     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            98865432111                                                                     


Q ss_pred             -----------EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          144 -----------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       144 -----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                                 .+..|...  ...+++++..+++++.||.|++||++.++++..+..|...+.++.++  +++|++++.|
T Consensus       161 ~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d  236 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNAD  236 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSC--EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETT
T ss_pred             EeecccceeeEEEcCcccc--cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCC
Confidence                       01112222  23444577899999999999999999999999999999999988776  4699999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---------cceEEEEEe
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---------FQYTCVAYD  283 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---------~~~~~~~~~  283 (288)
                      |.|++||+...+....+..+..|...+.++.++  ++++++|+.||.|++||+++|+++..+         ..+.+++|+
T Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             CEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            999999999998888888776677778777775  569999999999999999999998876         236778887


Q ss_pred             ec
Q 023018          284 LD  285 (288)
Q Consensus       284 ~d  285 (288)
                      |+
T Consensus       315 ~~  316 (342)
T d2ovrb2         315 NT  316 (342)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=228.30  Aligned_cols=204  Identities=28%  Similarity=0.423  Sum_probs=168.0

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS  138 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  138 (288)
                      ...+|...|++++|+| ++.+|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.+++||..+
T Consensus       116 ~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         116 SSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             ---CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccCCCCCEEEEEECC-CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            4456888899999999 788999999999999999999999888888888888888887776677766666666666543


Q ss_pred             ------------------------------------------CceeEEe-------ccCCCCEEEEEEcCCCCEEEEecC
Q 023018          139 ------------------------------------------GNLKCTL-------EGPGGGVEWVSWHPRGHIVLAGSE  169 (288)
Q Consensus       139 ------------------------------------------~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~  169 (288)
                                                                +.....+       ..|...|.+++|+|++++|++++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence                                                      2222222       235678999999999999999999


Q ss_pred             CCeEEEEECCccc------------EEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018          170 DSTVWMWNADRAA------------YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       170 dg~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                      ||.|++||++++.            .......|...|++++|+|++++|++|+.||.|++||+++++++..+.+   |..
T Consensus       275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~---H~~  351 (388)
T d1erja_         275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG---HRN  351 (388)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC---CSS
T ss_pred             CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC---CCC
Confidence            9999999997643            2344556889999999999999999999999999999999999999987   778


Q ss_pred             CeEEEEE------cCCCCEEEEEeCCCcEEEEEcC
Q 023018          238 GLTCLTI------SADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       238 ~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .|.++++      +|++.+|++|+.||+|+||+++
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8998875      5688999999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-32  Score=222.78  Aligned_cols=220  Identities=20%  Similarity=0.351  Sum_probs=175.6

Q ss_pred             CeeEeecCCCCE-EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           56 STHIFSGHSDEV-YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        56 ~~~~~~~h~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ...+|+||.+.| +|++|+   +++||+|+.||+|+|||+.+++.+.++.+|.++|++++|+|+ .+|++|+.||.|++|
T Consensus         4 ~~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             CcEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            356899998875 677764   469999999999999999999999999999999999999985 588999999999998


Q ss_pred             eCCCCceeEE----------------------------------------------------------------------
Q 023018          135 DPSSGNLKCT----------------------------------------------------------------------  144 (288)
Q Consensus       135 d~~~~~~~~~----------------------------------------------------------------------  144 (288)
                      ++...+....                                                                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            8654321110                                                                      


Q ss_pred             -------------------------------------eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe
Q 023018          145 -------------------------------------LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF  187 (288)
Q Consensus       145 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  187 (288)
                                                           ...+...+.++.|+|.+..+++++.|+.|++|+++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                                                 0112234567788889999999999999999999999999999


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE-EEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL-TISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       188 ~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      .+|...|.+++++  +++|++++.||.|++||+.++......     |...+.++ .+++++.+|++| .||.|++||++
T Consensus       240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE-----ECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             ccccccccccccc--cceeeeeecccccccccccccceeccc-----ccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            9999999999987  469999999999999999987655443     33344444 566777777665 58999999999


Q ss_pred             CCcEEEEe-----cceEEEEEeeccc
Q 023018          267 TGKVCCLN-----FQYTCVAYDLDFV  287 (288)
Q Consensus       267 t~~~~~~~-----~~~~~~~~~~df~  287 (288)
                      +|+++...     ..+.+++|+++.+
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~~~  337 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGKTL  337 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETTEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCCeE
Confidence            99988643     4567788877653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-31  Score=222.24  Aligned_cols=218  Identities=17%  Similarity=0.218  Sum_probs=168.2

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee------eEee---------------------------
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW------ASEI---------------------------  103 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~---------------------------  103 (288)
                      ....++|.+.|+++++++   .++++++.|++|+||+..+...      ....                           
T Consensus         7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            456789999999999875   4889999999999999643210      0000                           


Q ss_pred             --------------------------------ccccCcEEEEEEecC-----CCEEEEEeCCCeEEEEeCCCCc------
Q 023018          104 --------------------------------QGHKDSVSSLAFSMD-----GQLLASGGLDGLVQIWDPSSGN------  140 (288)
Q Consensus       104 --------------------------------~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~------  140 (288)
                                                      ..+...+..++|.++     +.++++++.||.+++|++....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence                                            012233455666554     3477888889999999864221      


Q ss_pred             ---------e---eEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe------eccCCCeEEEEEcCC
Q 023018          141 ---------L---KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF------SGHGSSVTCGDFTPD  202 (288)
Q Consensus       141 ---------~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~p~  202 (288)
                               .   ......+...+.+++|+|++ +|++|+.||+|++||+++++++..+      .+|..+|++++|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                     0   00112344568899999987 8999999999999999998876654      458899999999999


Q ss_pred             CCEEEEEeCCC---eEEEEeCCCCceeEEEcCC----------CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          203 GKTICTGSDDA---TLRVWNPKSGENIHVIRGH----------PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       203 ~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      +++|++|+.|+   .|++||+.+++.+..+...          ..|...|++++|+|++++|++|+.|++|++||+.+|+
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            99999999887   4899999999888776421          2388899999999999999999999999999999999


Q ss_pred             EEEEecceE
Q 023018          270 VCCLNFQYT  278 (288)
Q Consensus       270 ~~~~~~~~~  278 (288)
                      ++.++.+|.
T Consensus       323 ~~~~l~gH~  331 (393)
T d1sq9a_         323 RITTLNMHC  331 (393)
T ss_dssp             EEEEEECCG
T ss_pred             EEEEECCcC
Confidence            999985543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-30  Score=212.15  Aligned_cols=205  Identities=18%  Similarity=0.298  Sum_probs=170.3

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCE-EEEEeCCCeEEEE
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDGLVQIW  134 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~  134 (288)
                      ..+..|.++|.+++|++ ++.++++++  .++.+++|+..+++.+..+.+|...|.+++|+|++.+ +++++.||.|++|
T Consensus       109 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~  187 (325)
T d1pgua1         109 SEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY  187 (325)
T ss_dssp             EEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             cccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccc
Confidence            34567899999999999 666666554  4678999999999999999999999999999998875 6788999999999


Q ss_pred             eCCCCceeEEec---cCCCCEEEEEEcCC-CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEc---CCCCEEE
Q 023018          135 DPSSGNLKCTLE---GPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT---PDGKTIC  207 (288)
Q Consensus       135 d~~~~~~~~~~~---~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---p~~~~l~  207 (288)
                      +....+....+.   .+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.+|..++..+.|+   |++++|+
T Consensus       188 d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred             cccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEE
Confidence            998887666554   45678999999995 6899999999999999999999999999888877665555   6889999


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEE--EEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC--LTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      +++.|+.|+|||+++++.+..+..+. +...+..  +.+.++ .+|++++.||.|++||+
T Consensus       268 s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         268 TVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EEeCCCeEEEEECCCCCEEEEEEecC-CcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            99999999999999999888877543 3333333  444443 47889999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.1e-31  Score=213.22  Aligned_cols=229  Identities=10%  Similarity=0.023  Sum_probs=167.8

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeE---eeccccCcEEEEEEecCC-CEEEEEeCCCeE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASGGLDGLV  131 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  131 (288)
                      .++.+++|++.|++|+|+| ++.+||+|+.||+|+|||+.+.....   ...+|..+|.+++|+|++ .+|++|+.||.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4678899999999999999 78899999999999999998654322   233699999999999875 478999999999


Q ss_pred             EEEeCCCCceeEEeccCCC-CEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE----eec--cCCCeEEEEEcCCCC
Q 023018          132 QIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM----FSG--HGSSVTCGDFTPDGK  204 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~--~~~~i~~~~~~p~~~  204 (288)
                      ++|++...........+.. ......+.++...+++++.++.+++||++.+.....    ...  .......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            9999998877766654443 344555666788999999999999999875432221    111  122334445566666


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeE----------------------------------------------------EE---
Q 023018          205 TICTGSDDATLRVWNPKSGENIH----------------------------------------------------VI---  229 (288)
Q Consensus       205 ~l~~~~~dg~i~i~d~~~~~~~~----------------------------------------------------~~---  229 (288)
                      .+++++.|+.|++||++......                                                    .+   
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            77777777777777765332100                                                    00   


Q ss_pred             ---cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec---ceEEEEEeec
Q 023018          230 ---RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLNF---QYTCVAYDLD  285 (288)
Q Consensus       230 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~~---~~~~~~~~~d  285 (288)
                         .....+...+++++|+|++.+|++|+.||.|++||+.+++++..+.   ....++|+++
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEEC
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeC
Confidence               0111244568899999999999999999999999999999998772   3344555553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-31  Score=212.23  Aligned_cols=197  Identities=18%  Similarity=0.263  Sum_probs=155.9

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .+++++|+||.++|++++|+|     |++|+.||+|++|++.++     ...|...|.++++++++ .+++++.|++|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~   71 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV   71 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence            467899999999999999987     789999999999998753     24577777777776543 4566777777777


Q ss_pred             EeCCC--------------------------------------------------------------------------C
Q 023018          134 WDPSS--------------------------------------------------------------------------G  139 (288)
Q Consensus       134 ~d~~~--------------------------------------------------------------------------~  139 (288)
                      |++..                                                                          .
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecccc
Confidence            75321                                                                          1


Q ss_pred             ceeEEe-ccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE-EeeccCCCeEEEEEcCC----------CCEEE
Q 023018          140 NLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPD----------GKTIC  207 (288)
Q Consensus       140 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~p~----------~~~l~  207 (288)
                      +....+ ..+...+++++|+|++.+|++|+.+|.|++||+.+++.+. .+..|..+|.+++|+|.          +.+|+
T Consensus       152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         152 EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred             ceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeE
Confidence            111111 1245679999999999999999999999999999887654 46789999999999874          46899


Q ss_pred             EEeCCCeEEEEeCCCCc-eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          208 TGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      +|+.|+.|++||++++. .+..+.+   |...|++++|+|++ .|++++.||.|++|++
T Consensus       232 sgs~D~~i~iw~~~~~~~~~~~~~~---h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         232 TGSLDTNIFIYSVKRPMKIIKALNA---HKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEESSCTTCCEEETTS---STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eecCCCeEEEEECCCCCeEEEEeCC---CCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999999997644 4444444   78899999999986 5788999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-28  Score=192.38  Aligned_cols=220  Identities=25%  Similarity=0.478  Sum_probs=175.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      -+.++.+.+|...|+|++|   ++++||+|+.||+|+|||+.+++.+.++.+|...|++++|  ++++|++|+.||.|++
T Consensus         5 ~~~i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEEEeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            3455667788899999875   5679999999999999999999999999999999999887  5679999999999999


Q ss_pred             EeCCCCceeEEe-------------------------------------------ccCCCCEEEEEEcCCCCEEEEecCC
Q 023018          134 WDPSSGNLKCTL-------------------------------------------EGPGGGVEWVSWHPRGHIVLAGSED  170 (288)
Q Consensus       134 ~d~~~~~~~~~~-------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d  170 (288)
                      |++..+......                                           ..+...+..+.+.  ...+++++.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d  157 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  157 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCC
Confidence            998765433222                                           2233445555554  4578888999


Q ss_pred             CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCE
Q 023018          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL  250 (288)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (288)
                      +.|++||+++++.+..+.++...+..+.++  +.++++++.||.|++||+++...+.....   +...+..  +++++.+
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG---HEELVRC--IRFDNKR  230 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEE--EECCSSE
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecc---cceeeee--ccccceE
Confidence            999999999999999999999999888775  56899999999999999999988888776   4555554  5667889


Q ss_pred             EEEEeCCCcEEEEEcCC---------CcEEEEec----ceEEEEEeeccc
Q 023018          251 ALSGSKDGSVHMVNITT---------GKVCCLNF----QYTCVAYDLDFV  287 (288)
Q Consensus       251 l~~~~~dg~i~iwd~~t---------~~~~~~~~----~~~~~~~~~df~  287 (288)
                      |++|+.||.|++||+.+         ..++..+.    .+.+++|++.++
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l  280 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI  280 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCE
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEE
Confidence            99999999999999854         34555553    345666665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.6e-28  Score=195.64  Aligned_cols=203  Identities=19%  Similarity=0.260  Sum_probs=162.2

Q ss_pred             eeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ......|...+.+++|+| ++.++++++ ++.+++|+..  +.....  ....+.+++|+|++++|++|+.||.|++||+
T Consensus        92 ~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~  165 (299)
T d1nr0a2          92 KAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  165 (299)
T ss_dssp             SCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccccc-ccccccccc-cccccccccc--cccccc--ccccccccccccccccccccccccccccccc
Confidence            344566788899999999 666665554 5789999854  322222  3456789999999999999999999999999


Q ss_pred             CCCceeE-EeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE---EEeeccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          137 SSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL---NMFSGHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       137 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      .+++... ....|...|.+++|+|++++|++++.++.|++||+.++..+   ..+..|..+|++++|+|++.+|++|+.|
T Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d  245 (299)
T d1nr0a2         166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD  245 (299)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCC
Confidence            8876544 34457889999999999999999999999999999887654   3455688999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      |.|++||++++.....+.....+...+.++.| +++.+|++++.||.|++||+.
T Consensus       246 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999887654444333324556777765 456789999999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-27  Score=190.35  Aligned_cols=206  Identities=26%  Similarity=0.479  Sum_probs=167.2

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee---------------------------------
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW---------------------------------   99 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------------   99 (288)
                      ..++++.+.+|.++|++++|+| +  +|++|+.|+.+++|+......                                 
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~-~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  122 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRD-N--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW  122 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET-T--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred             CCCEEEEEeCCCCCEEEEEeCC-C--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEe
Confidence            4578889999999999999987 3  889999999999998754221                                 


Q ss_pred             -----------------------------------------------eEeeccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018          100 -----------------------------------------------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus       100 -----------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                                                                     +..+.+|...+  ..+.+++.+|++|+.||.|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~  200 (342)
T d2ovrb2         123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIR  200 (342)
T ss_dssp             ESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEE
T ss_pred             ecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEE
Confidence                                                           11112233333  34455788999999999999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec---cCCCeEEEEEcCCCCEEEEE
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG---HGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +||+..++.+..+..|...+.++++++  ++|++++.||.|++||+...+....+..   |...+.++.++  ++++++|
T Consensus       201 ~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~  276 (342)
T d2ovrb2         201 VWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS  276 (342)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             EeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE
Confidence            999999999999999999999888864  6999999999999999998887777664   45567776665  5799999


Q ss_pred             eCCCeEEEEeCCCCceeEEEcCC--CccccCeEEEEEcCCCCEEEEEeCCCc----EEEEEcCC
Q 023018          210 SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLALSGSKDGS----VHMVNITT  267 (288)
Q Consensus       210 ~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~t  267 (288)
                      +.||.|++||+++++.++.+...  ..|...|++++|+|++.+|++|+.||+    |++||+..
T Consensus       277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999999999988877532  236678999999999999999999985    99999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=198.07  Aligned_cols=169  Identities=18%  Similarity=0.335  Sum_probs=140.9

Q ss_pred             CCCCEEEEEEcCCC----CcEEEEEeCCCeEEEEEccCCe------------------eeEeeccccCcEEEEEEecCCC
Q 023018           63 HSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQGD------------------WASEIQGHKDSVSSLAFSMDGQ  120 (288)
Q Consensus        63 h~~~v~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~  120 (288)
                      +...+..++|.+..    ..++++++.||.+++|++....                  .......+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            45567888887732    4688999999999999985321                  111122345668899999987 


Q ss_pred             EEEEEeCCCeEEEEeCCCCceeEEe------ccCCCCEEEEEEcCCCCEEEEecCCC---eEEEEECCcccEEEEee---
Q 023018          121 LLASGGLDGLVQIWDPSSGNLKCTL------EGPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNMFS---  188 (288)
Q Consensus       121 ~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~---  188 (288)
                      +||+|+.||+|+|||+.+++.+..+      .+|..+|.+++|+|++++|++|+.|+   .|++||+++++.+..+.   
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            8999999999999999998876654      35788999999999999999999886   49999999988777664   


Q ss_pred             ----------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC
Q 023018          189 ----------GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       189 ----------~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  232 (288)
                                +|...|++++|+|++++|++|+.|++|++||+++++++.++.+|
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc
Confidence                      79999999999999999999999999999999999999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.5e-26  Score=187.17  Aligned_cols=157  Identities=9%  Similarity=0.029  Sum_probs=134.2

Q ss_pred             cCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 023018           62 GHSDEVYSVACSPTDATLVATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      +|...|.+++|+| ++++|++++.+.  .|++|++.+++.. .+..|...|.+++|+|++++|++++.++.+++|++.++
T Consensus        40 ~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            6999999999999 666666655443  7999999887654 56679999999999999999999999999999999999


Q ss_pred             ceeEEeccCCCCEEEEEEcCCCCEEEEec----------CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE
Q 023018          140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGS----------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +....+..+...+.+++|+|+|++|+.+.          .++.+++|++.+++.... ..+...+..+.|+|+|++|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEE
Confidence            99888888988999999999999998643          345799999988765544 4467788999999999999999


Q ss_pred             eCCCeEEEEeCC
Q 023018          210 SDDATLRVWNPK  221 (288)
Q Consensus       210 ~~dg~i~i~d~~  221 (288)
                      +.++.+.+|+..
T Consensus       197 s~~~~~~~~d~~  208 (360)
T d1k32a3         197 SYRSLDPSPDRV  208 (360)
T ss_dssp             ESCCCCCEECSS
T ss_pred             eCCCceEccccc
Confidence            999999999754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-25  Score=177.07  Aligned_cols=199  Identities=23%  Similarity=0.502  Sum_probs=163.4

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe-----------------------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-----------------------------  102 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----------------------------  102 (288)
                      ...++++.+.+|.++|++++|+   +++|++|+.||.|++|++..+.....                             
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV  119 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccccccccccccccccccccccccceeecccccceeE
Confidence            3467889999999999999874   46899999999999999866432211                             


Q ss_pred             --------------eccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEec
Q 023018          103 --------------IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS  168 (288)
Q Consensus       103 --------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  168 (288)
                                    +..|...+..+.+.  ...+++++.|+.|++||+.+++.+..+.++...+..+.++  +..+++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  195 (293)
T d1p22a2         120 WDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS  195 (293)
T ss_dssp             EECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE
T ss_pred             eeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec
Confidence                          12345566655554  4578889999999999999999999999988888888876  56899999


Q ss_pred             CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CceeEEEcCCCccccCe
Q 023018          169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GENIHVIRGHPYHTEGL  239 (288)
Q Consensus       169 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~v  239 (288)
                      .||.|++||+++.+.+..+..+...+..  +++++.+|++++.||.|++||+.+         ...+..+.+   |...|
T Consensus       196 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---H~~~V  270 (293)
T d1p22a2         196 SDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRV  270 (293)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCC
T ss_pred             CCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC---CCCCE
Confidence            9999999999999999999988888875  556788999999999999999643         234556665   78889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEE
Q 023018          240 TCLTISADSTLALSGSKDGSVHMVN  264 (288)
Q Consensus       240 ~~~~~~~~~~~l~~~~~dg~i~iwd  264 (288)
                      ++++|+  +.+|++++.||+|++||
T Consensus       271 ~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         271 FRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEEc--CCEEEEEecCCEEEEeC
Confidence            999985  56899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-25  Score=181.82  Aligned_cols=201  Identities=20%  Similarity=0.352  Sum_probs=165.8

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      .........|...+.+...   ++.+++++..|+.|++|++.+++.+....++...+.++.|+|++.++++++.||.|++
T Consensus       151 ~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         151 PYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  227 (355)
T ss_dssp             TTEEEEEECCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cceeeeeeecccccccccc---ccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEe
Confidence            3445566677777776665   4568999999999999999999999999989999999999999999999999999999


Q ss_pred             EeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEE-EEcCCCCEEEEEeCC
Q 023018          134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG-DFTPDGKTICTGSDD  212 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~p~~~~l~~~~~d  212 (288)
                      |++.++..+..+.+|...|.+++++  +++|++|+.||.|++||+++.....  ..|...+.++ .+++++.+|++|+ |
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~-d  302 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSGS-E  302 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEEE-T
T ss_pred             eeccccccccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEEe-C
Confidence            9999999999999999999999996  4699999999999999998876543  3455555555 4566777666665 8


Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      |.|++||+++++.+.....  .|..+|.+++|+|+ .++++++.||.++||-+
T Consensus       303 ~~i~vwd~~tg~~~~~~~~--~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANIL--KDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTT--TTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEec--CCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            9999999999987754322  27788999999986 57788899998766543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=8e-26  Score=185.03  Aligned_cols=194  Identities=12%  Similarity=0.064  Sum_probs=164.5

Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEec
Q 023018           69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~  146 (288)
                      .-.|||.+++++|+++. |.|++|++..+..+. + .|...|.+++|+|+|++|++++.+.  .|++||..+++.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            45699977888888775 899999998877655 3 5899999999999999988776543  7999999887654 566


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe----------CCCeEE
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS----------DDATLR  216 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~----------~dg~i~  216 (288)
                      .|...+.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            7888999999999999999999999999999999999999998999999999999999998654          344689


Q ss_pred             EEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE
Q 023018          217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV  270 (288)
Q Consensus       217 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~  270 (288)
                      +||+.+++......    +...+..+.|+|+|+.|++++.++.+.+|+......
T Consensus       163 v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         163 VYDMEGRKIFAATT----ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             EEETTTTEEEECSC----SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             eeccccCceeeecc----cccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            99999876554433    556788899999999999999999999999876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-24  Score=175.53  Aligned_cols=205  Identities=10%  Similarity=0.082  Sum_probs=149.5

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC-cEEEEEEecCCCEEEEEeCCCeEEEEeC
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD-SVSSLAFSMDGQLLASGGLDGLVQIWDP  136 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~  136 (288)
                      ....+|..+|++++|+|.++.+|++|+.||.|++|++...........+.. ......+.++...+++++.++.+++||+
T Consensus        50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred             EEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeec
Confidence            344579999999999996778999999999999999998777666654443 3345556677889999999999999997


Q ss_pred             CCCceeEEe----cc--CCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEE--------------------------
Q 023018          137 SSGNLKCTL----EG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--------------------------  184 (288)
Q Consensus       137 ~~~~~~~~~----~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------------  184 (288)
                      +.+......    ..  .........+.+.+..+++++.|+.|++|+++.....                          
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (342)
T d1yfqa_         130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred             cccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEE
Confidence            644322111    11  1122334455556666777777777777766432110                          


Q ss_pred             -----------------------------E------EeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 023018          185 -----------------------------N------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI  229 (288)
Q Consensus       185 -----------------------------~------~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~  229 (288)
                                                   .      ....|...+++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus       210 ~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence                                         0      00124456889999999999999999999999999999888877


Q ss_pred             cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ..    ...+..++|+|++++|++++.|+.+++|...
T Consensus       290 ~~----~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         290 AK----FNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CC----CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             cC----CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            63    2345667888999999999999988888653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.3e-23  Score=176.68  Aligned_cols=223  Identities=10%  Similarity=0.036  Sum_probs=163.8

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEe--e---ccccCcEEEEEEecCCCEEEEE-
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE--I---QGHKDSVSSLAFSMDGQLLASG-  125 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~---~~~~~~i~~~~~~~~~~~l~~~-  125 (288)
                      ...+.+..+..|. .+..++|+| ++++|++++.||+|++||+.+++....  +   .+|...+.+++|+|+|++++++ 
T Consensus        50 ~t~~~~~~l~~g~-~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          50 DSKKIVKVIDTGY-AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             TTCSEEEEEECCS-SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence            4567788888875 589999999 888999999999999999998764432  2   2466667777888999987555 


Q ss_pred             eCCCeEEEEeCCCCceeEEec-------------------------------------------------------cCCC
Q 023018          126 GLDGLVQIWDPSSGNLKCTLE-------------------------------------------------------GPGG  150 (288)
Q Consensus       126 ~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------~~~~  150 (288)
                      ..++.+.+||..++.....+.                                                       .+..
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            578999999988765443221                                                       1123


Q ss_pred             CEEEEEEcCCCCEEEEecC-CCeEEEEECCccc-----------------------------------------------
Q 023018          151 GVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAA-----------------------------------------------  182 (288)
Q Consensus       151 ~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-----------------------------------------------  182 (288)
                      .+..+.|+|++++++++.. +..+.+++..+++                                               
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            3567888888887666543 3445566554332                                               


Q ss_pred             -------EEEEeeccCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceeEEEcC------CCccccCeEEE
Q 023018          183 -------YLNMFSGHGSSVTCGDFTPDGKTICT-------GSDDATLRVWNPKSGENIHVIRG------HPYHTEGLTCL  242 (288)
Q Consensus       183 -------~~~~~~~~~~~i~~~~~~p~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~v~~~  242 (288)
                             ....+.+|...+..++|+|++++|++       +..+++|+|||+.+++....+..      ...+...+.++
T Consensus       288 ~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~  367 (426)
T d1hzua2         288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP  367 (426)
T ss_dssp             CTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred             cccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence                   23445567778899999999999995       44578999999999887665531      22356679999


Q ss_pred             EEcCCCCEEEEE-----eCCCcEEEEEcCCCcEEEEecc
Q 023018          243 TISADSTLALSG-----SKDGSVHMVNITTGKVCCLNFQ  276 (288)
Q Consensus       243 ~~~~~~~~l~~~-----~~dg~i~iwd~~t~~~~~~~~~  276 (288)
                      +|+|||++++.+     +.+|.|+|||.+|+++...+.+
T Consensus       368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence            999999877543     3578899999999999887743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=3e-22  Score=162.51  Aligned_cols=199  Identities=10%  Similarity=-0.002  Sum_probs=149.5

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeEEecc
Q 023018           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      ++|++ ++.++++++.+++|.+||+.+++.+.++.. +...+.+++|+|+|++++ +++.++.|++||+.+++.+..+..
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46788 889999999999999999999999988763 556678999999999875 556789999999999988776653


Q ss_pred             CCC------CEEEEEEcCCCCEEEEec------------CCCeEEEEECCcc----------------------------
Q 023018          148 PGG------GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRA----------------------------  181 (288)
Q Consensus       148 ~~~------~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~----------------------------  181 (288)
                      ...      .+..++|+|+|+++++++            .++.+.+|+..++                            
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            321      345678888888776553            2344555544321                            


Q ss_pred             -------------cEEEEe-------------------------------------------------------------
Q 023018          182 -------------AYLNMF-------------------------------------------------------------  187 (288)
Q Consensus       182 -------------~~~~~~-------------------------------------------------------------  187 (288)
                                   +.+..+                                                             
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                         111111                                                             


Q ss_pred             -------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 023018          188 -------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV  260 (288)
Q Consensus       188 -------~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (288)
                             ..+...+..+.+++++.+++... .+.|.+||+.+++.+..+.    +...+.+++|+|||++|++++.||.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~----~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc----CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence                   11233345566666666666554 4679999999998888776    34568899999999999999999999


Q ss_pred             EEEEcCCCcEEEEe
Q 023018          261 HMVNITTGKVCCLN  274 (288)
Q Consensus       261 ~iwd~~t~~~~~~~  274 (288)
                      ++||+.+++.+..+
T Consensus       316 ~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         316 AVFNPDTLEKVKNI  329 (346)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECccCCEEEEE
Confidence            99999999999887

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=8e-23  Score=171.76  Aligned_cols=208  Identities=11%  Similarity=0.016  Sum_probs=153.3

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEe--c---cCCCC
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--E---GPGGG  151 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~---~~~~~  151 (288)
                      ..++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.||+|++||+.+++.....  .   .|.+.
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            3456778899999999999999999998764 5899999999999999999999999999988754432  2   34445


Q ss_pred             EEEEEEcCCCCEEEEe-cCCCeEEEEECCcccEEEEee------------------------------------------
Q 023018          152 VEWVSWHPRGHIVLAG-SEDSTVWMWNADRAAYLNMFS------------------------------------------  188 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~------------------------------------------  188 (288)
                      +.+++|+|+|++++++ ..++.+++||..++.++..+.                                          
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            6667778899987555 478999999987655432221                                          


Q ss_pred             -------------ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEEEcC-----------------------
Q 023018          189 -------------GHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRG-----------------------  231 (288)
Q Consensus       189 -------------~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----------------------  231 (288)
                                   .+...+..+.|+|++++++++.. +..+.+++..+++.+.....                       
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence                         12344567889999998877654 45677777766544322210                       


Q ss_pred             ----------------------------CCccccCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCcEEEEe--
Q 023018          232 ----------------------------HPYHTEGLTCLTISADSTLALS-------GSKDGSVHMVNITTGKVCCLN--  274 (288)
Q Consensus       232 ----------------------------~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~t~~~~~~~--  274 (288)
                                                  ...|...+..++|+|++++|++       ++.+++|++||+.++++...+  
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence                                        0114566888999999999995       445789999999999876554  


Q ss_pred             -----------cceEEEEEeec
Q 023018          275 -----------FQYTCVAYDLD  285 (288)
Q Consensus       275 -----------~~~~~~~~~~d  285 (288)
                                 ..+..++||||
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSS
T ss_pred             cchhcccCCCCccEEEEEECCC
Confidence                       12556778887

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-22  Score=160.18  Aligned_cols=148  Identities=19%  Similarity=0.346  Sum_probs=122.7

Q ss_pred             EEcCCCCcEEEEEeCC-CeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE-Eecc
Q 023018           71 ACSPTDATLVATGGGD-DKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEG  147 (288)
Q Consensus        71 ~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~  147 (288)
                      ++++ ++..+++++.+ +.+++|++...+....+. .|..++++++|+|++.+|++|+.||.|++||+.+++... .+..
T Consensus       125 ~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  203 (287)
T d1pgua2         125 AVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF  203 (287)
T ss_dssp             EEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred             eeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence            4455 44556666665 579999987766555543 477899999999999999999999999999999887654 3567


Q ss_pred             CCCCEEEEEEcCC----------CCEEEEecCCCeEEEEECCc-ccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 023018          148 PGGGVEWVSWHPR----------GHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR  216 (288)
Q Consensus       148 ~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~  216 (288)
                      |..+|.+++|+|.          +.+|++|+.|++|++||+++ .+.+..+.+|...|++++|+|++ .|++++.|+.|+
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~  282 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK  282 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence            8899999999874          45899999999999999977 45677778899999999999975 688999999999


Q ss_pred             EEeC
Q 023018          217 VWNP  220 (288)
Q Consensus       217 i~d~  220 (288)
                      +|++
T Consensus       283 iW~i  286 (287)
T d1pgua2         283 RWNV  286 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.1e-21  Score=155.09  Aligned_cols=211  Identities=12%  Similarity=0.109  Sum_probs=164.2

Q ss_pred             CCCeeEeec--CCCCEEEEEEcCCCCcE-EEEEeCCCeEEEEEccCCeeeEeeccccC-----cEEEEEEecCCCEEEEE
Q 023018           54 DDSTHIFSG--HSDEVYSVACSPTDATL-VATGGGDDKGFFWRINQGDWASEIQGHKD-----SVSSLAFSMDGQLLASG  125 (288)
Q Consensus        54 ~~~~~~~~~--h~~~v~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~  125 (288)
                      .+.+..+..  +...+.+++|+| ++++ +++++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++++
T Consensus        21 ~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          21 MAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred             CeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEe
Confidence            344555554  345678999999 5554 56778899999999999998888765433     34578999999988877


Q ss_pred             e------------CCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEe------
Q 023018          126 G------------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF------  187 (288)
Q Consensus       126 ~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------  187 (288)
                      .            .++.+.+||..+++....+..+ ..+..++|+|+++++++++.  .+.+||..+++....+      
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~  176 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT
T ss_pred             ecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc
Confidence            5            3578999999999888887754 45888999999999998864  4667877654432221      


Q ss_pred             ------------------------------------------------------------eccCCCeEEEEEcCCCCEEE
Q 023018          188 ------------------------------------------------------------SGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       188 ------------------------------------------------------------~~~~~~i~~~~~~p~~~~l~  207 (288)
                                                                                  ..+...+..+.++|++.+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (337)
T d1pbyb_         177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF  256 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence                                                                        12234455667778888777


Q ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       208 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+  ++.|++||+.+++.+..+.    +...+.+++|+|+|++|++++.+|.|++||+.+++.+..+
T Consensus       257 ~~--~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         257 GA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             Ec--cccEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            65  4789999999999888886    4567889999999999999999999999999999999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.9e-20  Score=147.84  Aligned_cols=214  Identities=14%  Similarity=0.111  Sum_probs=171.7

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLV  131 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i  131 (288)
                      ..+.+..+..|.. +..++|++++..+++++..++.+.+|+..+++....+..+ ....++.|+|++..++ ++..++.+
T Consensus        63 t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~  140 (301)
T d1l0qa2          63 TNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV  140 (301)
T ss_dssp             TTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccce
Confidence            3455666666654 6889999966667777888899999999999988888744 5668899999999765 55568899


Q ss_pred             EEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC-CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe
Q 023018          132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED-STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS  210 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~  210 (288)
                      .+|+..+.+....+..+. .+..+.++|++..+++++.+ +.+.+|+.........+. ....+..+++++++..+++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~  218 (301)
T d1l0qa2         141 SVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN  218 (301)
T ss_dssp             EEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred             eeeeccccceeeecccCC-CceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeecccccccccccc
Confidence            999999998888877554 58899999999888777654 667788877776666655 445678899999999887665


Q ss_pred             C---CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEe
Q 023018          211 D---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       211 ~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .   ++.|++||+.+++.+..+..    ...+..++|+|+|++| ++++.++.|++||+.+++++.++
T Consensus       219 ~~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         219 VDKYFNTVSMIDTGTNKITARIPV----GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccceeeeeeeeecCCCeEEEEEcC----CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            3   46899999999988887763    4568999999999977 56777999999999999999887

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=1.3e-19  Score=143.97  Aligned_cols=224  Identities=17%  Similarity=0.177  Sum_probs=176.3

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEE-EEeCCCeEE
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQ  132 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~  132 (288)
                      .+.++.+... ..+..++|+|++..++++++.++.|++||+.+++.+..+..+. .+..+.|++++.+++ ++..++.+.
T Consensus        22 ~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   99 (301)
T d1l0qa2          22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS   99 (301)
T ss_dssp             TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceee
Confidence            3445555543 4578999999444455677889999999999999999988665 458899999998655 455778999


Q ss_pred             EEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC
Q 023018          133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD  211 (288)
Q Consensus       133 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~  211 (288)
                      +|+..+++....+..+ ....++.|+|++..++ ++..++.+.+|+..+...+..+.. ...+..+.++|++..+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred             ecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeecc
Confidence            9999999888887755 4578999999998765 555678899999999988887764 456788999999999887776


Q ss_pred             C-CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEe---cceEEEEEee
Q 023018          212 D-ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVCCLN---FQYTCVAYDL  284 (288)
Q Consensus       212 d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~t~~~~~~~---~~~~~~~~~~  284 (288)
                      + +.+.+|+.........+.    ....+..+++++++..+++++.   ++.|++||+.+++++..+   ..+.+++|+|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~sp  253 (301)
T d1l0qa2         178 DSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTP  253 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECT
T ss_pred             cccccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeC
Confidence            5 567788887776666665    3455778999999988776543   468999999999998876   5678899998


Q ss_pred             c
Q 023018          285 D  285 (288)
Q Consensus       285 d  285 (288)
                      |
T Consensus       254 d  254 (301)
T d1l0qa2         254 D  254 (301)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.5e-21  Score=162.76  Aligned_cols=195  Identities=8%  Similarity=-0.027  Sum_probs=153.8

Q ss_pred             CcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--EEec---cCCCC
Q 023018           77 ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLE---GPGGG  151 (288)
Q Consensus        77 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~---~~~~~  151 (288)
                      ..++++.+.+|+|.|||..+++.+..+..+. .+..++|+|+|+++++++.||.|++||+.+++..  ..++   .|.+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3456889999999999999999999998764 6899999999999999999999999999887643  3333   23344


Q ss_pred             EEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEeec-----------cCCCeEEEEEcCCCCEEE-EEeCCCeEEEE
Q 023018          152 VEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTIC-TGSDDATLRVW  218 (288)
Q Consensus       152 i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~p~~~~l~-~~~~dg~i~i~  218 (288)
                      +.+..|+|+|++| +++..++.|++||..+++++..+..           +......+.++|++.+++ +...++.|.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            5556677899976 6777899999999999988877653           334567788999988764 55668899999


Q ss_pred             eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEe
Q 023018          219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~~~~~  274 (288)
                      |..+++........  ....+..+.|+|+|+++++++. ++.+.+++..+++.+..+
T Consensus       191 d~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         191 DYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             ETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EccCCCcceEEEEc--ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            99887654433221  4566889999999998777665 568999999999888765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=6.2e-20  Score=154.12  Aligned_cols=172  Identities=13%  Similarity=0.027  Sum_probs=131.0

Q ss_pred             CCCCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--eEee---ccccCcEEEEEEecCCCEE-E
Q 023018           50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEI---QGHKDSVSSLAFSMDGQLL-A  123 (288)
Q Consensus        50 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l-~  123 (288)
                      +....+.+..+..|. .+..++|+| +++++++++.||.|++||+.+++.  ...+   ..|.+.+.+..|+|||++| +
T Consensus        48 D~~t~~v~~~~~~g~-~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          48 DGSTYEIKTVLDTGY-AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             ETTTCCEEEEEECSS-CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            345567788888774 699999999 888999999999999999987653  2232   3455666677788899976 6


Q ss_pred             EEeCCCeEEEEeCCCCceeEEecc-----------CCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcccEEEEee-cc
Q 023018          124 SGGLDGLVQIWDPSSGNLKCTLEG-----------PGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFS-GH  190 (288)
Q Consensus       124 ~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~-~~  190 (288)
                      ++..++.|++||..+++.+..+..           +.+....+.++|++..+ ++...++.|.+|+..+.+...... .+
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence            777899999999999988877653           34456788999988865 556678999999998876554333 34


Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCC
Q 023018          191 GSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSG  223 (288)
Q Consensus       191 ~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~  223 (288)
                      ...+..++|+|+|+++++++. ++.+.++|..++
T Consensus       206 g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            567889999999998877764 446777776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.8e-20  Score=147.85  Aligned_cols=204  Identities=12%  Similarity=0.068  Sum_probs=158.7

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccc--cCcEEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeEEeccCCC----
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGH--KDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGG----  150 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~----  150 (288)
                      .++++++.|++|++||+.+++.+..+..+  ...+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999999888643  3457789999999987 4667899999999999999888765432    


Q ss_pred             -CEEEEEEcCCCCEEEEec------------CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 023018          151 -GVEWVSWHPRGHIVLAGS------------EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV  217 (288)
Q Consensus       151 -~i~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i  217 (288)
                       .+..++|+|+++.++++.            .++.+.+||..+++.+..+.. ...+..++|+|+|+++++++.  .+.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence             345789999999988776            357899999999988888774 456788999999999998864  4678


Q ss_pred             EeCCCCceeEEEcCCC---------------------------------------------------------------c
Q 023018          218 WNPKSGENIHVIRGHP---------------------------------------------------------------Y  234 (288)
Q Consensus       218 ~d~~~~~~~~~~~~~~---------------------------------------------------------------~  234 (288)
                      ||..+++....+....                                                               .
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence            8887765444332110                                                               0


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe---cceEEEEEeecc
Q 023018          235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN---FQYTCVAYDLDF  286 (288)
Q Consensus       235 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~---~~~~~~~~~~df  286 (288)
                      +...+..+.++|++.+++++  ++.|++||+.+++.+..+   ..+.+++|+||-
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG  291 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS
T ss_pred             CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCC
Confidence            22334556677777777655  588999999999999887   556789998873

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=4.6e-18  Score=139.47  Aligned_cols=209  Identities=10%  Similarity=0.038  Sum_probs=147.1

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEE-----eCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe--------
Q 023018           60 FSGHSDEVYSVACSPTDATLVATG-----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG--------  126 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------  126 (288)
                      ...+..++..++++| +++.++..     +..+.|.+||..+++.+.++..+..+  .++|+|+|++|++++        
T Consensus        16 ~~~~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~   92 (373)
T d2madh_          16 AGAADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK   92 (373)
T ss_pred             cccCCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence            346788999999999 55554443     23467999999999999988766544  689999999998874        


Q ss_pred             --CCCeEEEEeCCCCceeEEeccCC-----------------------------------------------CCEEEEEE
Q 023018          127 --LDGLVQIWDPSSGNLKCTLEGPG-----------------------------------------------GGVEWVSW  157 (288)
Q Consensus       127 --~dg~i~i~d~~~~~~~~~~~~~~-----------------------------------------------~~i~~~~~  157 (288)
                        .++.|.+||..+++.+..+..+.                                               ....++.+
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHI  172 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEE
Confidence              35789999999887654432111                                               12335567


Q ss_pred             cCCCCE-EEEecCCCeEEEEECCcccEEEEeec-----------------------------------------------
Q 023018          158 HPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSG-----------------------------------------------  189 (288)
Q Consensus       158 ~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------------------------------  189 (288)
                      +|+++. +++.+.|+.+.+|+...+........                                               
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  252 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEee
Confidence            777664 46777889999998765433221100                                               


Q ss_pred             --c----------CCCeEEEEEcCCCCEEE----------EEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCC
Q 023018          190 --H----------GSSVTCGDFTPDGKTIC----------TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       190 --~----------~~~i~~~~~~p~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                        +          ......++++|++..++          +...++.+.+||..+++.+..+.    +...+..++|+||
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~----~~~~~~~~a~spD  328 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQD  328 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec----CCCCeeEEEECCC
Confidence              0          01112234555554433          34456678999999998888776    5567899999999


Q ss_pred             CCE--EEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          248 STL--ALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       248 ~~~--l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                      |+.  +++++.|+.|++||+.+|+.+..+.
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            984  4678899999999999999999883

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=7.6e-18  Score=137.05  Aligned_cols=215  Identities=11%  Similarity=0.034  Sum_probs=151.1

Q ss_pred             CCCeeEeecCCCCEEEEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeeeEeeccccC-------cEEEEEEe
Q 023018           54 DDSTHIFSGHSDEVYSVACSPTDATLVATG----------GGDDKGFFWRINQGDWASEIQGHKD-------SVSSLAFS  116 (288)
Q Consensus        54 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~  116 (288)
                      .+.+..+..+..+  .++|+| ++++|++.          ..++.|++||..+++.+..+..+..       ....++|+
T Consensus        38 g~~~~~~~~g~~~--~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          38 GRVIGMIDGGFLP--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  114 (355)
T ss_dssp             TEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CcEEEEEECCCCC--ceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe
Confidence            4455666655544  689999 55555443          4478999999999988877653322       23457899


Q ss_pred             cCCCEEEEEe--CCCeEEEEeCCCCceeEEeccCC---------------------------------------------
Q 023018          117 MDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPG---------------------------------------------  149 (288)
Q Consensus       117 ~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------------  149 (288)
                      |++++++++.  .+..+.+|+..+++.+..+..+.                                             
T Consensus       115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  194 (355)
T d2bbkh_         115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE  194 (355)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred             cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec
Confidence            9999887764  46789999998887655443211                                             


Q ss_pred             CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--Eeecc----------CCCeEEEEEcCCCCEEEEEeCC-----
Q 023018          150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGH----------GSSVTCGDFTPDGKTICTGSDD-----  212 (288)
Q Consensus       150 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~i~~~~~~p~~~~l~~~~~d-----  212 (288)
                      ..+....+.+.+..++.++.++.+++|++..+....  ....+          ......++++|++..++....+     
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence            011223455556677788888999999988764321  11111          1223457899999988776543     


Q ss_pred             -----CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcEEEEec
Q 023018          213 -----ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVCCLNF  275 (288)
Q Consensus       213 -----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~t~~~~~~~~  275 (288)
                           ..|.+||+.+++.+..+.    ....+.+++|+|||+  ++++++.++.|++||+.+|+.+..+.
T Consensus       275 ~~~~~~~v~v~d~~t~~~~~~~~----~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ecCCCCeEEEEeCCCCcEEEEec----CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                 369999999999888776    445688999999997  44567779999999999999999873

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.8e-17  Score=131.50  Aligned_cols=210  Identities=12%  Similarity=0.149  Sum_probs=138.8

Q ss_pred             ecCCCCEEEEEEcCCCCcEE-EEEeCCCeEEEEEccCCeeeEeec---cccCcEEEEEEecCCCEEEEEeC-CCeEEEEe
Q 023018           61 SGHSDEVYSVACSPTDATLV-ATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDGQLLASGGL-DGLVQIWD  135 (288)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d  135 (288)
                      ..|.+.+..|+|+| ++++| +++..++.|++|++........+.   .+...+..++|+|+|++|++++. ++.|.+|+
T Consensus        33 ~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          33 VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            36788999999999 56555 555668999999998654333222   23445678999999999988874 67899998


Q ss_pred             CCCCceeEE--eccCCCCEEEEEEcCCCCEEEEecC-CCeEEEEECCcccEEEE--------------------------
Q 023018          136 PSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNM--------------------------  186 (288)
Q Consensus       136 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------------------------  186 (288)
                      .........  ...+...+.++.++|+++++++++. +..|.+|+.........                          
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            776654333  2345556788899998887776654 45677777643211000                          


Q ss_pred             ---------------------------ee------ccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEEcCC
Q 023018          187 ---------------------------FS------GHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       187 ---------------------------~~------~~~~~i~~~~~~p~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  232 (288)
                                                 ..      ........+++++++++++.. ..++.+.+|++........+...
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF  271 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE
Confidence                                       00      011234556778888776554 45667888877654433333322


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeC-CCcEEEE--EcCCCcEE
Q 023018          233 PYHTEGLTCLTISADSTLALSGSK-DGSVHMV--NITTGKVC  271 (288)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw--d~~t~~~~  271 (288)
                      ......+..++|+|+|++|++++. ++.|++|  |..+|++.
T Consensus       272 ~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            223455778999999998887764 5889998  55677653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.1e-16  Score=126.08  Aligned_cols=208  Identities=12%  Similarity=0.122  Sum_probs=138.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeEEe---ccCCCC
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTL---EGPGGG  151 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~  151 (288)
                      ..+++++.+++|++|++.....+..+  ..|.+.+..++|+|+|++|++++ .++.|++|++........+   ......
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            35577889999999999764333222  24778899999999999886655 5899999998765433222   223445


Q ss_pred             EEEEEEcCCCCEEEEecC-CCeEEEEECCcccEEEE--eeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeE
Q 023018          152 VEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIH  227 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d~~~~~~~~  227 (288)
                      +..++|+|+|++|++++. ++.|.+|+.........  ...+...+.++.++|+++++++++. +..|.+|+........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcce
Confidence            778999999999888875 67899998766543332  3345566788889999888777664 4467777764321110


Q ss_pred             E-----------------------------------------------------Ec---CCCccccCeEEEEEcCCCCEE
Q 023018          228 V-----------------------------------------------------IR---GHPYHTEGLTCLTISADSTLA  251 (288)
Q Consensus       228 ~-----------------------------------------------------~~---~~~~~~~~v~~~~~~~~~~~l  251 (288)
                      .                                                     +.   ...........++++++++++
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            0                                                     00   000011234567788988876


Q ss_pred             EEE-eCCCcEEEEEcCCCcEEEEe-------cceEEEEEeec
Q 023018          252 LSG-SKDGSVHMVNITTGKVCCLN-------FQYTCVAYDLD  285 (288)
Q Consensus       252 ~~~-~~dg~i~iwd~~t~~~~~~~-------~~~~~~~~~~d  285 (288)
                      ++. ..++.+.+|++.........       ..+.+++|+||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD  286 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS  286 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC
Confidence            654 55778999998765433222       33557888876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=7.8e-16  Score=126.09  Aligned_cols=205  Identities=9%  Similarity=-0.034  Sum_probs=140.3

Q ss_pred             CCCEEEEEEcCCCCcE--EEEEeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe----------CCC
Q 023018           64 SDEVYSVACSPTDATL--VATGGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG----------LDG  129 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~--l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg  129 (288)
                      .++...++..++....  .+....+|  .|.+||..+++.+..+..+..+  .++|+|+|+.|++.+          .++
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCC
Confidence            3444444555533332  22234444  4667799999988888766555  588999999888764          367


Q ss_pred             eEEEEeCCCCceeEEeccCCC-------CEEEEEEcCCCCEEEEec-CCCeEEEEECCcccEEEEeeccC----------
Q 023018          130 LVQIWDPSSGNLKCTLEGPGG-------GVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHG----------  191 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----------  191 (288)
                      .|.+||..+++....+..+..       ....++|+|+|++++++. .++.+.+||+.+++.+..+..+.          
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCc
Confidence            899999999998887754322       234689999999888776 56899999987765433221100          


Q ss_pred             --------------------------------------------------------------------------------
Q 023018          192 --------------------------------------------------------------------------------  191 (288)
Q Consensus       192 --------------------------------------------------------------------------------  191 (288)
                                                                                                      
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccccee
Confidence                                                                                            


Q ss_pred             -------CCeEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-E-EEE
Q 023018          192 -------SSVTCGDFTPDGKTICTGSDD---------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-L-ALS  253 (288)
Q Consensus       192 -------~~i~~~~~~p~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-l~~  253 (288)
                             .....++++|++..++....+         ..|.+||..+++.+..+.    ....+..++|+|||+ + +++
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCEEEEE
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEEEEEE
Confidence                   001124555666665544322         247888988888776665    445688899999986 3 456


Q ss_pred             EeCCCcEEEEEcCCCcEEEEe
Q 023018          254 GSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       254 ~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      +..++.|++||..+|+.+..+
T Consensus       333 ~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             ETTTTEEEEEESSSCEEEEEC
T ss_pred             eCCCCeEEEEECCCCCEEEEE
Confidence            677899999999999999988

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.3e-15  Score=123.69  Aligned_cols=216  Identities=14%  Similarity=0.128  Sum_probs=148.3

Q ss_pred             EEEEEEcCCCCcEEEEE-----eCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE----------eCCCeE
Q 023018           67 VYSVACSPTDATLVATG-----GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG----------GLDGLV  131 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i  131 (288)
                      +.-.+.+| +++.+++.     ..++.|.+||..+++.+.++..+..+  .++|+|+|++|++.          ..++.|
T Consensus         4 ~~~~a~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           4 RILEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CBCCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             cEeEeeCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            33345678 55555443     34567999999999999988765544  69999999988764          347899


Q ss_pred             EEEeCCCCceeEEeccCC-------CCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccC-----------
Q 023018          132 QIWDPSSGNLKCTLEGPG-------GGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHG-----------  191 (288)
Q Consensus       132 ~i~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~-----------  191 (288)
                      ++||+.+++.+..+..+.       .....++|+|+++.++++.  .+..+.+|+..+++.+..+..+.           
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            999999999887765332       2235689999999887764  45789999998876655443211           


Q ss_pred             ----------------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE--EcCCC--
Q 023018          192 ----------------------------------SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV--IRGHP--  233 (288)
Q Consensus       192 ----------------------------------~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~--  233 (288)
                                                        ..+....+.+++..++.++.++.+++|++..+.....  ...+.  
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  240 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA  240 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence                                              1112234455556777788899999999887653211  11110  


Q ss_pred             -----ccccCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCcEEEEe---cceEEEEEeec
Q 023018          234 -----YHTEGLTCLTISADSTLALSGSKD----------GSVHMVNITTGKVCCLN---FQYTCVAYDLD  285 (288)
Q Consensus       234 -----~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~t~~~~~~~---~~~~~~~~~~d  285 (288)
                           ........+++++++..++....+          ..|.+||+.+++.+..+   ..+.+++|+||
T Consensus       241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spD  310 (355)
T d2bbkh_         241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD  310 (355)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred             eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCC
Confidence                 011233457899999888766543          36999999999998876   34678888887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.68  E-value=2.2e-16  Score=127.35  Aligned_cols=158  Identities=14%  Similarity=0.154  Sum_probs=122.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCCCEEE-EecCCCeEEEEECCcccEEEEeecc
Q 023018          113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVL-AGSEDSTVWMWNADRAAYLNMFSGH  190 (288)
Q Consensus       113 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~  190 (288)
                      ++|++++++|++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|++++ ++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999999999999999999999988874 455688999999999774 5567899999999999888776533


Q ss_pred             C------CCeEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEE
Q 023018          191 G------SSVTCGDFTPDGKTICTGS------------DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL  252 (288)
Q Consensus       191 ~------~~i~~~~~~p~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  252 (288)
                      .      ..+..++|+|+|+++++++            .++.+.+|+..+++....+.... ....+..+.+++++.+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEE
Confidence            2      2356789999999998765            46778899988766544332211 233455667777777665


Q ss_pred             EEeCCCcEEEEEcCCCcEEEEe
Q 023018          253 SGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       253 ~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ++   +.+.+|++.+++.+..+
T Consensus       161 ~~---~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         161 AG---PDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             ES---SSEEEECTTTCCEEEEE
T ss_pred             eC---CcceEEEccCCCEEEEE
Confidence            42   56999999999998876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=4.1e-13  Score=109.46  Aligned_cols=188  Identities=12%  Similarity=0.034  Sum_probs=125.7

Q ss_pred             CCCCCeeEeecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeeeEeecc----------------
Q 023018           52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQG----------------  105 (288)
Q Consensus        52 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~----------------  105 (288)
                      ...+.+..+..+..+  .++|+| ++++|++++          .++.|.+||..+++.+..+..                
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  131 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence            345666667666544  799999 666776654          457899999988765433211                


Q ss_pred             -------------------------------ccCcEEEEEEecCCCE-EEEEeCCCeEEEEeCCCCceeEEecc------
Q 023018          106 -------------------------------HKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEG------  147 (288)
Q Consensus       106 -------------------------------~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~------  147 (288)
                                                     +.....++.++|+++. +++.+.||.+.+|+...++.......      
T Consensus       132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         132 NTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             EEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence                                           1122345667777764 46777889999998765443221100      


Q ss_pred             --------------------CC---------------------------------CCEEEEEEcCCCCEE----------
Q 023018          148 --------------------PG---------------------------------GGVEWVSWHPRGHIV----------  164 (288)
Q Consensus       148 --------------------~~---------------------------------~~i~~~~~~~~~~~l----------  164 (288)
                                          ..                                 .....+++++++..+          
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  291 (373)
T d2madh_         212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             ccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence                                00                                 011223445544433          


Q ss_pred             EEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018          165 LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (288)
Q Consensus       165 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (288)
                      ++...++.+.+||+.+++.+..+. +...+..++|+|+|+.  +++++.++.|++||+.+++.+..+..   +....+.+
T Consensus       292 ~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~---~g~~P~~l  367 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE---LGSGPQVL  367 (373)
T ss_pred             EeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC---CCCCCcEE
Confidence            344556788999999998888775 6677899999999985  46788999999999999999999876   44556666


Q ss_pred             EEcC
Q 023018          243 TISA  246 (288)
Q Consensus       243 ~~~~  246 (288)
                      ++.+
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            6554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=2.4e-12  Score=108.46  Aligned_cols=107  Identities=11%  Similarity=0.033  Sum_probs=81.9

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEe---------CCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCe
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGG---------GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL  130 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  130 (288)
                      +..|...|.++.|+| +++.|+.++         .++.+.+||+.+++. ..+..+...+..+.|+|+|++||... ++.
T Consensus        57 ~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~  133 (470)
T d2bgra1          57 FDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NND  133 (470)
T ss_dssp             TTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTE
T ss_pred             hhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-ccc
Confidence            345567899999999 777777664         356789999998874 45777889999999999999999864 678


Q ss_pred             EEEEeCCCCceeEEecc------------------CCCCEEEEEEcCCCCEEEEecC
Q 023018          131 VQIWDPSSGNLKCTLEG------------------PGGGVEWVSWHPRGHIVLAGSE  169 (288)
Q Consensus       131 i~i~d~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~l~~~~~  169 (288)
                      +++|+..+++.......                  ..+....+.|+|+|+.|++...
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            99999988876554321                  1223456789999999988654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=8.5e-13  Score=107.68  Aligned_cols=175  Identities=9%  Similarity=-0.072  Sum_probs=120.0

Q ss_pred             CCCCeeEeecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEEccCCeeeEeeccccC-------cEEEEEE
Q 023018           53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGG----------GDDKGFFWRINQGDWASEIQGHKD-------SVSSLAF  115 (288)
Q Consensus        53 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~  115 (288)
                      ..+.+..+.++..+  .++|+| +++.|++.+          .++.|.+||..+++.+..+..+..       ....++|
T Consensus        55 ~~~~~~~~~~~~~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          55 CGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCcEEEEEeCCCCC--cceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence            34455556666554  588999 666666543          467899999999998887754322       2236899


Q ss_pred             ecCCCEEEEEe-CCCeEEEEeCCCCceeEEeccCC---------------------------------------------
Q 023018          116 SMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPG---------------------------------------------  149 (288)
Q Consensus       116 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------------  149 (288)
                      +|+|++|+++. .++.+.+||+.+++....+..+.                                             
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence            99999888776 57899999987765544321100                                             


Q ss_pred             ----------------------------------------------------CCEEEEEEcCCCCEEEEecCC-------
Q 023018          150 ----------------------------------------------------GGVEWVSWHPRGHIVLAGSED-------  170 (288)
Q Consensus       150 ----------------------------------------------------~~i~~~~~~~~~~~l~~~~~d-------  170 (288)
                                                                          .....+++++++..+++...+       
T Consensus       212 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             BCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             cceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence                                                                001124555555555443221       


Q ss_pred             --CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCC-EE-EEEeCCCeEEEEeCCCCceeEEEcC
Q 023018          171 --STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TI-CTGSDDATLRVWNPKSGENIHVIRG  231 (288)
Q Consensus       171 --g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~-~l-~~~~~dg~i~i~d~~~~~~~~~~~~  231 (288)
                        ..|.+||..+++.+..+. +...+..++|+|+|+ +| +++..++.|++||..+++.+..+..
T Consensus       292 ~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         292 AAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence              258889999888887776 345688899999997 34 5566789999999999999888874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=7.9e-12  Score=102.73  Aligned_cols=185  Identities=13%  Similarity=-0.002  Sum_probs=132.5

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeecc------------------------------ccCcEEEEEEecCCCEEEEEe-
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQG------------------------------HKDSVSSLAFSMDGQLLASGG-  126 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~i~~~~~~~~~~~l~~~~-  126 (288)
                      ..+++++.+|.|.+|++.+++.+.++..                              |........+.|||++|++.. 
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            3477888999999999999988777532                              222334444578999886664 


Q ss_pred             CCCeEEEEeCCCCceeEEecc-CCCCEEEEEEcCCCC--EEEEecCCC-----------------eEEEEECCcccEEEE
Q 023018          127 LDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGH--IVLAGSEDS-----------------TVWMWNADRAAYLNM  186 (288)
Q Consensus       127 ~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~  186 (288)
                      .+..|.++|+.+++....+.. ....+..++|+|+++  +++..+.+.                 .+..+|..+.+...+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            678999999999988777653 356799999999988  444443322                 235578888777776


Q ss_pred             eeccCCCeEEEEEcCCCCEEEEEeCC-----------------------------------------CeEEEEeCCCCce
Q 023018          187 FSGHGSSVTCGDFTPDGKTICTGSDD-----------------------------------------ATLRVWNPKSGEN  225 (288)
Q Consensus       187 ~~~~~~~i~~~~~~p~~~~l~~~~~d-----------------------------------------g~i~i~d~~~~~~  225 (288)
                      +... ..+..+.++|+|+++++++.+                                         +.+.+++......
T Consensus       172 I~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v  250 (441)
T d1qnia2         172 VIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF  250 (441)
T ss_dssp             EEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS
T ss_pred             EecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCce
Confidence            6643 457789999999999887644                                         2344444444445


Q ss_pred             eEEEcCCCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC
Q 023018          226 IHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSVHMVNITT  267 (288)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~t  267 (288)
                      +..+..    ......+.++|||+++++ +..+++|.+||+.+
T Consensus       251 ~~~IPv----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         251 TRYIPV----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEECC----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEeC----CCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            555553    234567899999998765 56789999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1.9e-12  Score=109.07  Aligned_cols=143  Identities=14%  Similarity=0.130  Sum_probs=110.2

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc-----CCCCEEEEEEcCCCCEEEEecC---------CCeEEEE
Q 023018          111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSE---------DSTVWMW  176 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~  176 (288)
                      ..+.|.+++.++..  .++.|.+||+.+++....+..     +...|.++.|+|++++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35779998877654  578899999999987665543     4467999999999999998753         5788999


Q ss_pred             ECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCc---------------cccCeEE
Q 023018          177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---------------HTEGLTC  241 (288)
Q Consensus       177 d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------------~~~~v~~  241 (288)
                      |+.+++ +..+..+...+..+.|||+|++||... ++.+++|+..++...+.......               .......
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999876 455777888999999999999999865 67899999998876554332110               1123456


Q ss_pred             EEEcCCCCEEEEEeCC
Q 023018          242 LTISADSTLALSGSKD  257 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~d  257 (288)
                      +.|+|||+.|+....|
T Consensus       176 ~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             cEECCCCCccceeEec
Confidence            7899999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.7e-09  Score=83.59  Aligned_cols=220  Identities=18%  Similarity=0.180  Sum_probs=134.9

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEE-EeCCC--eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-CCe-
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVAT-GGGDD--KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL-  130 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~-  130 (288)
                      ....+..+...+...+||| +++.||. ....+  .+.+.+...+.. ..+..+........|+|+++.++.... .+. 
T Consensus        30 ~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             SCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             CcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCcc
Confidence            3444555577789999999 5555554 43333  355566555544 344446778889999999998876653 332 


Q ss_pred             -EEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEe-cCCC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          131 -VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       131 -i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                       +..+......... ............+++.+..++.. ..+|  .|.+.++..+.. ..+...........|+|+++.+
T Consensus       108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         108 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             EEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred             ceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccccccccccccee
Confidence             3333333333222 22334445566777776655444 3444  466667665543 3333455667788999999998


Q ss_pred             EEEeCCC---eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcEEEEe---cce
Q 023018          207 CTGSDDA---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVCCLN---FQY  277 (288)
Q Consensus       207 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~t~~~~~~~---~~~  277 (288)
                      +..+.++   .+.+.+...+.. ..+.    .........|+|||+.|+..+.   ...|+++++.+++.....   ..+
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~  260 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  260 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred             EEEeecCCceeeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcE
Confidence            8766544   455566655443 3332    3445667899999998875443   347899999988765544   234


Q ss_pred             EEEEEee
Q 023018          278 TCVAYDL  284 (288)
Q Consensus       278 ~~~~~~~  284 (288)
                      ..++|||
T Consensus       261 ~~p~WSP  267 (269)
T d2hqsa1         261 KFPAWSP  267 (269)
T ss_dssp             EEEEECC
T ss_pred             EeEEeCC
Confidence            5566666

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=2.7e-10  Score=88.05  Aligned_cols=215  Identities=12%  Similarity=0.014  Sum_probs=139.2

Q ss_pred             CEEEEEEcCCCCcEEEE-EeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           66 EVYSVACSPTDATLVAT-GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      .-..+++.+ ++.++++ .+..+.+..++............-......+++++++.++++....+.+++++..+......
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            357899999 5555554 45557777776654332222211122346789999998877777777777776555544333


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE  224 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~  224 (288)
                      .. .......+++.++++++++-..+..+..++...................+++.|+++.+++....+.|..++.....
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            22 23457899999999988887777888888875543222222223455789999999988888888899999987543


Q ss_pred             eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEeec
Q 023018          225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYDLD  285 (288)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~~d  285 (288)
                      . ..+...  .......+++.++|+++++....+.|..++..+.......    ..+.+++++++
T Consensus       173 ~-~~~~~~--~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         173 Q-VVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             E-EECCCS--SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTT
T ss_pred             e-eeeecc--ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCC
Confidence            3 233211  3455788999999998888888888998887654332221    34566776653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.34  E-value=3.2e-11  Score=99.05  Aligned_cols=202  Identities=11%  Similarity=0.035  Sum_probs=138.5

Q ss_pred             cCCCCEEEEEEcCCCCcEE-EEEeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCC--EEEEEeCCC--------
Q 023018           62 GHSDEVYSVACSPTDATLV-ATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQ--LLASGGLDG--------  129 (288)
Q Consensus        62 ~h~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~dg--------  129 (288)
                      .|.-........| ++++| ++...+.+|.++|+.+++....+. .+......++|+|+++  |++..+.+.        
T Consensus        69 ~hhP~~s~t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          69 CHHPHISMTDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             BCCCEEEEETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             ccCCCcceecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3555566666678 55555 556678999999999998877664 3567889999999988  554444332        


Q ss_pred             ---------eEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCC------------------------------
Q 023018          130 ---------LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------------------------------  170 (288)
Q Consensus       130 ---------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------  170 (288)
                               .+..+|..+.+....+.... ....+.++|+|+++++++.+                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     23557888888777766543 47889999999988877643                              


Q ss_pred             -----------CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCce--------eEEEc
Q 023018          171 -----------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGEN--------IHVIR  230 (288)
Q Consensus       171 -----------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~-~~~dg~i~i~d~~~~~~--------~~~~~  230 (288)
                                 +.+.+++....+.+..+..... ...+.++|+|+++++ +..+++|.|||+.+...        ...+.
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                       2344444444445555554443 577899999999765 56789999999864221        01111


Q ss_pred             CCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 023018          231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  266 (288)
                      ......-.....+|+++|..+.+...|.+|..|++.
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            111122334567899999988899999999999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=5.3e-10  Score=86.35  Aligned_cols=194  Identities=10%  Similarity=0.008  Sum_probs=133.1

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE  146 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  146 (288)
                      ...+++.+ ++.++++....+.+++++-.+...+..... .....++++.++++++++-.....+..++...........
T Consensus        59 p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          59 PQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             CCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             ceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            46788988 677777777666666665554444433332 3456899999999887776667778888765544332222


Q ss_pred             cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 023018          147 GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI  226 (288)
Q Consensus       147 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~  226 (288)
                      ........+++.++++++++...++.|..++.............-.....|++.++|+++++....+.|..++.... ..
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-~~  215 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TS  215 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS-CC
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC-eE
Confidence            22345678999999998888888899999998765443333334456789999999988888777888988886543 33


Q ss_pred             EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      ..+...  .......|+++++|.++++-..+++|+.++.
T Consensus       216 ~~~~~~--~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         216 TVLPFT--GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECCCC--SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEccC--CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            333221  2345688999999988777666776765553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=1.9e-09  Score=85.14  Aligned_cols=209  Identities=12%  Similarity=0.073  Sum_probs=143.7

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKC  143 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~  143 (288)
                      .+..+++.| +++++++...+++|..|+....  ...+......+.+++|.++|+++++...++.+..++.....  ...
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence            588999999 7889999998999988885533  33344456788999999999988888888888887765432  222


Q ss_pred             Eec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee----------ccCCCeEEEEEcCCCCEEEEEeCC
Q 023018          144 TLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------GHGSSVTCGDFTPDGKTICTGSDD  212 (288)
Q Consensus       144 ~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~p~~~~l~~~~~d  212 (288)
                      ... ........+.+.++++++++.+.++.+..++...+.......          ........+.+.. +..+++.+..
T Consensus       106 ~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~  184 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEK  184 (302)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTT
T ss_pred             ccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCC
Confidence            221 244568899999999999988889999999987764332221          1122345666653 2344555677


Q ss_pred             CeEEEEeCCCCcee---EEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cceEEEEEe
Q 023018          213 ATLRVWNPKSGENI---HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN------FQYTCVAYD  283 (288)
Q Consensus       213 g~i~i~d~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~------~~~~~~~~~  283 (288)
                      +.|+.++.......   ..+.    .......++++++|+++++...++.|..++.. |+.....      ....+++|+
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~----~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             CeEEecccccccccccccccc----CCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEc
Confidence            88888887654322   1111    22345679999999988888888999999875 4433322      457788884

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.27  E-value=2.5e-08  Score=79.10  Aligned_cols=212  Identities=14%  Similarity=0.076  Sum_probs=141.3

Q ss_pred             eecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC----CCeEEEEe
Q 023018           60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWD  135 (288)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  135 (288)
                      +......+..++|.+ +++++++-...+.|+.|+..+......+.........+++.++|+++++...    .+.+...+
T Consensus        35 ~~~~~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             eccCCcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            333445567999998 6678778778899999998877665555555567789999999987776543    34466666


Q ss_pred             CCCCceeEEecc--CCCCEEEEEEcCCCCEEEEecC------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEE
Q 023018          136 PSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC  207 (288)
Q Consensus       136 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~  207 (288)
                      ............  ....+..+++.++|++.++...      .+.+..++..... +..+...-...+.++|+|+++.|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEE
Confidence            665554444332  2335788999999987776432      2346666654333 333322334567899999998775


Q ss_pred             EE-eCCCeEEEEeCCCC-ceeEEE----cCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          208 TG-SDDATLRVWNPKSG-ENIHVI----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       208 ~~-~~dg~i~i~d~~~~-~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .+ +..+.|+.|++... ......    ............+++.++|++.++....+.|.+|+- .|+.+..+
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            55 55789999987532 211111    100001223567999999998888888999999994 78888776

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=3.9e-08  Score=76.42  Aligned_cols=213  Identities=13%  Similarity=0.145  Sum_probs=150.1

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc------ccCcEEEEEEecCCC-EEEEE-eCCCeEEEEeCC
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG------HKDSVSSLAFSMDGQ-LLASG-GLDGLVQIWDPS  137 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~-~~dg~i~i~d~~  137 (288)
                      .-..+++.+ +++++++-.....|++|+.. ++.+..+..      ....-..+++..+.. ++++. +.++.|.+++. 
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            368999999 67787777778899999965 565555532      111234566665544 44433 34567888875 


Q ss_pred             CCceeEEec-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeCCCe
Q 023018          138 SGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDAT  214 (288)
Q Consensus       138 ~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~dg~  214 (288)
                      .++....+. ........+++.+++.++++....+.+.+++. +++.+..+.  .+......+++.++++.+++....+.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccc
Confidence            455555553 33456789999999998888888888999986 456666553  34557788999999988888888899


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEe------cceEEEEEeec
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITTGKVCCLN------FQYTCVAYDLD  285 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t~~~~~~~------~~~~~~~~~~d  285 (288)
                      |++||.. ++.+..+.. .........+++.++|+++++-.. ++.|.+|+ .+|+.+..+      .....+++.++
T Consensus       180 V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             eeeeecC-Cceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            9999974 666767643 224456789999999998777544 45799998 568877665      24667777765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=2.3e-08  Score=79.15  Aligned_cols=219  Identities=6%  Similarity=0.018  Sum_probs=138.9

Q ss_pred             CCEEEEEEcCCCCcEEEEEeC-------CCeEEEEEccCCeeeEeeccc----cCcEEEEEEecCCCEEEEEeCCCeEEE
Q 023018           65 DEVYSVACSPTDATLVATGGG-------DDKGFFWRINQGDWASEIQGH----KDSVSSLAFSMDGQLLASGGLDGLVQI  133 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i  133 (288)
                      ...-.++|.| +++++++...       +|+|..|+..++.........    ...-..+.|.++++.++++.....|..
T Consensus        18 ~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            3467789999 6666655332       467888888877654433221    223467999999998888877777888


Q ss_pred             EeCCCCceeEEeccCC----CCEEEEEEcCCCCEEEEecC---------------CCeEEEEECCcccEEEEeeccCCCe
Q 023018          134 WDPSSGNLKCTLEGPG----GGVEWVSWHPRGHIVLAGSE---------------DSTVWMWNADRAAYLNMFSGHGSSV  194 (288)
Q Consensus       134 ~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i  194 (288)
                      ++..............    ...+.+++.++|++.++-..               .|.|+.++. .++...... .-...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Cccee
Confidence            8876553322111111    13577999999988877432               245555554 233333222 23345


Q ss_pred             EEEEEcCCCC----EEEE-EeCCCeEEEEeCCCCceeE---EEcCC-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 023018          195 TCGDFTPDGK----TICT-GSDDATLRVWNPKSGENIH---VIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       195 ~~~~~~p~~~----~l~~-~~~dg~i~i~d~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      ..++|+|++.    +|++ -+..+.|..||+.....+.   .+... .........+++.++|++.++....+.|++|+.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            7889998765    4544 4567889998875432221   11111 112234568999999998888878899999999


Q ss_pred             CCCcEEEEe----cceEEEEEeecc
Q 023018          266 TTGKVCCLN----FQYTCVAYDLDF  286 (288)
Q Consensus       266 ~t~~~~~~~----~~~~~~~~~~df  286 (288)
                      .+++.+..+    ....+++|.+|.
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~  279 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCC
Confidence            888765544    457788888763

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=3.2e-08  Score=76.89  Aligned_cols=197  Identities=13%  Similarity=0.160  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcEEEE-EeCCCeEEEEEccCCeeeEeec-cccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           67 VYSVACSPTDATLVAT-GGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      -..+++.+..+..+++ .+.++.|..++.. +.....+. ........+++.+++.++++....+.+.+++.. ++.+..
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~  149 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHK  149 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             cccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeec
Confidence            3445555534444443 3445677777653 55555543 234556789999999988887778889998854 555555


Q ss_pred             ec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee--ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 023018          145 LE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSD-DATLRVWN  219 (288)
Q Consensus       145 ~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~p~~~~l~~~~~-dg~i~i~d  219 (288)
                      +.  .+......+++.++++.+++....+.|++|+. .++.+..+.  +.......|++.|+|+.+++-.. ++.|.+|+
T Consensus       150 ~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         150 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            53  34567889999999999888888999999997 456666653  23446789999999997776543 45799998


Q ss_pred             CCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 023018          220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK  269 (288)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~  269 (288)
                      . +|+.+..+.... .......+++.|+|.+++ ++.++.|++|...+..
T Consensus       229 ~-~G~~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         229 Q-DGQLISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             T-TSCEEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             C-CCCEEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            5 577776664321 234578899999997655 5578999999987754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.18  E-value=2.6e-08  Score=78.79  Aligned_cols=194  Identities=13%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             EEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccC----cEEEEEEecCCCEEEEEeC---------------
Q 023018           67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKD----SVSSLAFSMDGQLLASGGL---------------  127 (288)
Q Consensus        67 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~---------------  127 (288)
                      -..++|.+ ++..++++.....|...+..............+    ..+.+++.++|.+.++-..               
T Consensus        73 P~Gl~~~~-dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDR-DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECS-SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeC-CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            46799999 566666666667788888765443222111111    2478999999987776422               


Q ss_pred             CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCC-----EEEEecCCCeEEEEECCcccEEE------Eeec-cCCCeE
Q 023018          128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-----IVLAGSEDSTVWMWNADRAAYLN------MFSG-HGSSVT  195 (288)
Q Consensus       128 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~i~  195 (288)
                      .|.|..++.. ++...... .-...+.++|+|++.     ++++-+..+.|+.|++.....+.      .+.. ......
T Consensus       152 ~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            2345555432 33333222 223457899988764     45555778899999876432222      1111 123456


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCE-EEEEeCCCcEEEEEcC
Q 023018          196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL-ALSGSKDGSVHMVNIT  266 (288)
Q Consensus       196 ~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~  266 (288)
                      .|++.++|++.++....+.|.+||...+.....+..   ....+++++|.|+++. +++.+..|.|+.+++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~---p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC---CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            899999999888888889999999988877666654   3456889999998874 4566677888888864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=2.7e-08  Score=80.51  Aligned_cols=162  Identities=13%  Similarity=0.162  Sum_probs=105.3

Q ss_pred             CcEEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeE---Ee--ccCCCCEEEEEEcCCCCEEEEec-CCCeEEEEECCc
Q 023018          108 DSVSSLAFSMDGQLLASGGL-DGLVQIWDPSSGNLKC---TL--EGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR  180 (288)
Q Consensus       108 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  180 (288)
                      ..++++.|+|+|++++++.. ...|.+|+......+.   ..  .......+.++|+|+++++++.. .+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            35789999999998888763 4578888765432222   11  22456789999999999776554 578999999866


Q ss_pred             ccEE--EEee-----------------ccCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCceeE---EEcCC
Q 023018          181 AAYL--NMFS-----------------GHGSSVTCGDFTPDGKTICTGSD------DATLRVWNPKSGENIH---VIRGH  232 (288)
Q Consensus       181 ~~~~--~~~~-----------------~~~~~i~~~~~~p~~~~l~~~~~------dg~i~i~d~~~~~~~~---~~~~~  232 (288)
                      .+..  ....                 ........+.++|+|++|+++..      .+.|..|++.....+.   .+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5322  1111                 11123567899999999988753      2237777765432222   11111


Q ss_pred             CccccCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCc
Q 023018          233 PYHTEGLTCLTISA-DSTLALSGS-KDGSVHMVNITTGK  269 (288)
Q Consensus       233 ~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~t~~  269 (288)
                      .........++++| +|++|+++. .++.|.+|++....
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            11334567789998 789887664 57899999886543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4.1e-07  Score=69.72  Aligned_cols=191  Identities=14%  Similarity=0.126  Sum_probs=118.1

Q ss_pred             eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE
Q 023018           88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV  164 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  164 (288)
                      .|.|.|..... ...+..+...+...+|||||++||.....   ..+.+.+...+... .+..+........|+|+|..+
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence            57777766444 34444467788899999999999876543   35777777666544 344466778899999999988


Q ss_pred             EEecC-CC--eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeEEEcCCCccccC
Q 023018          165 LAGSE-DS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDA--TLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       165 ~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      +.... .+  .+..+........... ..........+++++..++.. ..+|  .|.+.++..+..... ..   ....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~---~~~~  172 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TW---EGSQ  172 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CC---SSSE
T ss_pred             eEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccceee-ec---cccc
Confidence            87654 22  2333333333333333 344445566778877765544 4444  466667765543322 22   4455


Q ss_pred             eEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEe--cceEEEEEeec
Q 023018          239 LTCLTISADSTLALSGSKDG---SVHMVNITTGKVCCLN--FQYTCVAYDLD  285 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~~~dg---~i~iwd~~t~~~~~~~--~~~~~~~~~~d  285 (288)
                      .....|+|++..++..+.++   .+.+.+..++....+.  .......|+||
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPD  224 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN  224 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCC
Confidence            67789999999888765543   4555666665543333  34456667776

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.03  E-value=1.6e-06  Score=67.60  Aligned_cols=210  Identities=18%  Similarity=0.097  Sum_probs=142.4

Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEecc
Q 023018           68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      -+..|.+.++.++.+--..+.|..|+..+++.. .+. ....+.++++.+++.++++ +.+ -|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456788767777777667789999999887643 332 3457889999988876654 555 488999998876544332


Q ss_pred             ----CCCCEEEEEEcCCCCEEEEecC----CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 023018          148 ----PGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVW  218 (288)
Q Consensus       148 ----~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~dg~i~i~  218 (288)
                          ....++.+.+.|+|++.++...    .+.-.+|.+..++....... -.....++|+++++.++.+ +..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence                2235788999999987766532    23455666666654444433 3356789999999876554 457788888


Q ss_pred             eCCCC--c---eeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe----cceEEEEEe
Q 023018          219 NPKSG--E---NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN----FQYTCVAYD  283 (288)
Q Consensus       219 d~~~~--~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~----~~~~~~~~~  283 (288)
                      ++...  .   ....+............+++..+|++.++.-..|.|..|| ..|+.+..+    ..+++++|.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEE
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEe
Confidence            76421  1   1112211111344578899999999888777788999999 468888876    457788884

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.8e-09  Score=86.09  Aligned_cols=201  Identities=11%  Similarity=0.141  Sum_probs=128.4

Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc---ccCcEEEEEEecCCCEEEEEe---------CCCeEEEEeCCC
Q 023018           71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGG---------LDGLVQIWDPSS  138 (288)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~  138 (288)
                      .|.+ ++.++. -..+|.|.+|++.+++....+..   ....+....|+|++++++...         ..+.+.++|+.+
T Consensus        23 ~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            5777 555553 45578899999998765444432   223567788999999887764         357889999998


Q ss_pred             CceeEEec--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEeec-cCC-----------------CeEEEE
Q 023018          139 GNLKCTLE--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGS-----------------SVTCGD  198 (288)
Q Consensus       139 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-----------------~i~~~~  198 (288)
                      +.......  .....+....|+|+|+.||... ++.|++.+...+..++.... ...                 .-..+-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            87544322  2334566789999999988876 47899988877655444321 111                 124678


Q ss_pred             EcCCCCEEEEEeCC-Ce---------------------------------EEEEeCCCCceeEEEcCC---CccccCeEE
Q 023018          199 FTPDGKTICTGSDD-AT---------------------------------LRVWNPKSGENIHVIRGH---PYHTEGLTC  241 (288)
Q Consensus       199 ~~p~~~~l~~~~~d-g~---------------------------------i~i~d~~~~~~~~~~~~~---~~~~~~v~~  241 (288)
                      |||+|++||....| ..                                 +.++|+.++.........   .....-+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999886422 22                                 334444333221111100   001223677


Q ss_pred             EEEcCCCCEEEEEeC-C---CcEEEEEcCCCcEEEEe
Q 023018          242 LTISADSTLALSGSK-D---GSVHMVNITTGKVCCLN  274 (288)
Q Consensus       242 ~~~~~~~~~l~~~~~-d---g~i~iwd~~t~~~~~~~  274 (288)
                      +.|+|++++++.... +   ..|.++|..+|++....
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence            899999887665432 2   36889999999877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=1e-07  Score=77.06  Aligned_cols=158  Identities=9%  Similarity=0.029  Sum_probs=101.8

Q ss_pred             CCEEEEEEcCCCCcEEEEE-eCCCeEEEEEccCCeeeE---ee--ccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCC
Q 023018           65 DEVYSVACSPTDATLVATG-GGDDKGFFWRINQGDWAS---EI--QGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPS  137 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~---~~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  137 (288)
                      ..+++++|+| ++++++++ .....|.+|+......+.   ..  .........++|+|+++++.+.. .+++|.+|++.
T Consensus       145 ~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3578999999 55544444 445678888865432221   11  12345678899999999876554 67899999987


Q ss_pred             CCceeEEe-----c--------------cCCCCEEEEEEcCCCCEEEEecC------CCeEEEEECCcccEEE------E
Q 023018          138 SGNLKCTL-----E--------------GPGGGVEWVSWHPRGHIVLAGSE------DSTVWMWNADRAAYLN------M  186 (288)
Q Consensus       138 ~~~~~~~~-----~--------------~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~------~  186 (288)
                      .++.....     .              ........+.++|+|++|+++..      .+.|..|++.....+.      .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            66432211     1              01123567899999999888743      2347777765432121      1


Q ss_pred             eeccCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCC
Q 023018          187 FSGHGSSVTCGDFTP-DGKTICTGS-DDATLRVWNPKSG  223 (288)
Q Consensus       187 ~~~~~~~i~~~~~~p-~~~~l~~~~-~dg~i~i~d~~~~  223 (288)
                      ........+.++++| +|++|+++. .++.|.+|++...
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            112334567899998 789887775 6789999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.95  E-value=7e-07  Score=69.93  Aligned_cols=198  Identities=13%  Similarity=0.071  Sum_probs=132.5

Q ss_pred             CeeEeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-eEee--ccccCcEEEEEEecCCCEEEEEeCCCeEE
Q 023018           56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEI--QGHKDSVSSLAFSMDGQLLASGGLDGLVQ  132 (288)
Q Consensus        56 ~~~~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  132 (288)
                      ....+......+.+++|.+ +++++++...++.+.+|+...... ...+  .........+.+.++++++++.+..+.+.
T Consensus        59 ~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          59 NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIW  137 (302)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccce
Confidence            3455566677899999999 677888888888888888765321 1111  12345678999999999888888889999


Q ss_pred             EEeCCCCceeEEec----------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE--eeccCCCeEEEEEc
Q 023018          133 IWDPSSGNLKCTLE----------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--FSGHGSSVTCGDFT  200 (288)
Q Consensus       133 i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~  200 (288)
                      .++...+.......          ........+.+.. +.++++.+..+.|+.++.........  ..........+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d  216 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD  216 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEEC
Confidence            99887765332221          1122456677764 44666677789999998765432211  11123445679999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEE---cCCCCEEEEEeCC
Q 023018          201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI---SADSTLALSGSKD  257 (288)
Q Consensus       201 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d  257 (288)
                      ++|+++++...++.|..++.. ++....... .......++++|   .+|++.|++++..
T Consensus       217 ~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~-~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         217 VEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTCCEEEECBTTCCEEEECTT-CCEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCEEEEEcCCCcEEEECCC-CCEEEEEec-CCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            999988888888999999875 443333322 113356789999   6688888766543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.87  E-value=8e-06  Score=64.26  Aligned_cols=195  Identities=11%  Similarity=0.038  Sum_probs=122.1

Q ss_pred             eEeecCCCCEEEEEEcCCCCcEEEEEeC----CCeEEEEEccCCeeeEeecc--ccCcEEEEEEecCCCEEEEEeC----
Q 023018           58 HIFSGHSDEVYSVACSPTDATLVATGGG----DDKGFFWRINQGDWASEIQG--HKDSVSSLAFSMDGQLLASGGL----  127 (288)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----  127 (288)
                      ..+.........+++.+ +++++++...    .+.+...+............  -......+++.++|++.++...    
T Consensus        75 ~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~  153 (319)
T d2dg1a1          75 RPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST  153 (319)
T ss_dssp             EEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT
T ss_pred             EEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccc
Confidence            33444555678999999 6666665432    23455555544443333321  1335688999999986665432    


Q ss_pred             --CCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcc-cEEE-------EeeccCCCeEE
Q 023018          128 --DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRA-AYLN-------MFSGHGSSVTC  196 (288)
Q Consensus       128 --dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~-~~~~-------~~~~~~~~i~~  196 (288)
                        .+.+..++..... +..+...-...+.++|+|+++.| ++-+..+.|+.|++... ....       ...........
T Consensus       154 ~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdG  232 (319)
T d2dg1a1         154 NPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS  232 (319)
T ss_dssp             BCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred             cCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceee
Confidence              2345555544333 33332233457889999999865 44466789999987532 1111       11111233578


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC---ccccCeEEEEEcCCCCEEEEEe
Q 023018          197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP---YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       197 ~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      |++.++|++.++....+.|.+||. .|+.+..+....   .+...+++++|.+....+++..
T Consensus       233 l~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         233 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            999999998888888999999996 688887776432   1233578999999777666554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=7.7e-06  Score=62.44  Aligned_cols=211  Identities=10%  Similarity=-0.011  Sum_probs=138.7

Q ss_pred             EeecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCC
Q 023018           59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPS  137 (288)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~  137 (288)
                      .+..+...+.+++|.+.++.++.+-...+.|+..++........+......+..+++..-+..|..+ ...+.|.+.++.
T Consensus        30 ~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence            3444555688999998666666666677889888887665544444334567889998766666544 567799999987


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEecC---CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCC
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDA  213 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg  213 (288)
                      .......+......+..++++|...+++....   .+.|...++............-.....|++.+.++.|+.+. ..+
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            66544444444457899999997666654432   23455556654333332332334668999998888886664 567


Q ss_pred             eEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       214 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      .|...++........+.+    ......+++. ++.+..+-...+.|...|..+|+.+..+
T Consensus       190 ~I~~~~~~g~~~~~v~~~----~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTEEEEEEEEEC----CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCCeEEEECC----CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            899999875444333333    1234577775 3444445556789999999999988766

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=5e-07  Score=69.47  Aligned_cols=193  Identities=12%  Similarity=0.098  Sum_probs=110.9

Q ss_pred             EcCC-CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeC-C-----CeEEEEeCCCCceeEE
Q 023018           72 CSPT-DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL-D-----GLVQIWDPSSGNLKCT  144 (288)
Q Consensus        72 ~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~  144 (288)
                      .+|+ .+..+|-.+ +|.|.+.++.+++.. .+..+.+.+...+|+|||++||.... +     ..|.+++..+++....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4563 044444333 467988999887754 45556778889999999998886542 2     2477788777765443


Q ss_pred             ecc------CCCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEEEEe-------------------------
Q 023018          145 LEG------PGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNMF-------------------------  187 (288)
Q Consensus       145 ~~~------~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~-------------------------  187 (288)
                      ...      .........|+|+++.|+.....      ..+...+...+......                         
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH  163 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccce
Confidence            211      12245678899999988875331      22444444322211100                         


Q ss_pred             ------------------------eccCCCeEEEEEcCCCCEEEE-EeC--CCeEEEEeCCCCceeEEEcCCCccccCeE
Q 023018          188 ------------------------SGHGSSVTCGDFTPDGKTICT-GSD--DATLRVWNPKSGENIHVIRGHPYHTEGLT  240 (288)
Q Consensus       188 ------------------------~~~~~~i~~~~~~p~~~~l~~-~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  240 (288)
                                              ...........++++  .++. ...  ...|.++|+.++... .+...  ....  
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~--~~~~--  236 (281)
T d1k32a2         164 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLR-KHTSF--TDYY--  236 (281)
T ss_dssp             STTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCE-ECCCC--CSSC--
T ss_pred             eeeeccCCcceeeeeccccceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceE-EeecC--CCcc--
Confidence                                    001111222233332  3333 222  235777888765543 33321  1222  


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          241 CLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       241 ~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      ...|+|+|+.|+.. .+|.|+++|+.+++.....
T Consensus       237 ~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         237 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence            34689999887764 4688999999999877654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=1.2e-05  Score=62.58  Aligned_cols=182  Identities=12%  Similarity=0.084  Sum_probs=123.2

Q ss_pred             CCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeecc----ccCcEEEEEEecCCCEEEEEeC----CCeEEEEe
Q 023018           64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGL----DGLVQIWD  135 (288)
Q Consensus        64 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d  135 (288)
                      ...+.++++.+ ++.++++ +.+ .|.++|..+++.......    ....++++.+.|+|++.++...    .+.-.+|.
T Consensus        58 ~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          58 PFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             SSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            45688899887 6666654 444 588999988875443221    1235789999999987665532    23455666


Q ss_pred             CCCCceeEEeccCCCCEEEEEEcCCCCEE-EEecCCCeEEEEECCcc------c--EEEEeeccCCCeEEEEEcCCCCEE
Q 023018          136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRA------A--YLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       136 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~------~--~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +..++....+.. -.....++|+++++.+ ++-+..+.|+.|++...      +  ....+.........+++.++|++.
T Consensus       135 ~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         135 VAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             EETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             ecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            666665544433 3356889999998855 45566788999987421      1  112223345567889999999988


Q ss_pred             EEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEc-CCCCEEEE
Q 023018          207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-ADSTLALS  253 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  253 (288)
                      ++....+.|..||. .|+.+..+..   ....+++++|- |+.+.|++
T Consensus       214 va~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         214 NARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCEEEE
T ss_pred             eeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCCCCCEEEE
Confidence            87777889999996 5888888875   33568999996 56655554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.3e-06  Score=71.10  Aligned_cols=183  Identities=12%  Similarity=0.013  Sum_probs=110.6

Q ss_pred             CEEEEEEcCCCCcEEEEE---------eCCCeEEEEEccCCeeeEeec--cccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           66 EVYSVACSPTDATLVATG---------GGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      .+....|+| +++.++..         +..+.+.++|+.++.......  .....+....|+|+|+.||-.. ++.|.+.
T Consensus        62 ~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             ccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            567788999 55555544         335789999999876544322  2344566688999999988765 6788898


Q ss_pred             eCCCCceeEEecc-CCC-----------------CEEEEEEcCCCCEEEEecCC-C------------------------
Q 023018          135 DPSSGNLKCTLEG-PGG-----------------GVEWVSWHPRGHIVLAGSED-S------------------------  171 (288)
Q Consensus       135 d~~~~~~~~~~~~-~~~-----------------~i~~~~~~~~~~~l~~~~~d-g------------------------  171 (288)
                      +..++...+.... ...                 .-..+.|||+|+.||....| .                        
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            8877765544322 111                 12578899999999986422 2                        


Q ss_pred             ---------eEEEEECCcccEEEEee------ccCCCeEEEEEcCCCCEEEEEeC-C---CeEEEEeCCCCceeEEEcCC
Q 023018          172 ---------TVWMWNADRAAYLNMFS------GHGSSVTCGDFTPDGKTICTGSD-D---ATLRVWNPKSGENIHVIRGH  232 (288)
Q Consensus       172 ---------~i~i~d~~~~~~~~~~~------~~~~~i~~~~~~p~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~  232 (288)
                               .+.++|+.++.......      .....+..+.|+|+++.++.... +   ..|.++|..+++....+...
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~  299 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence                     23444443332111110      11223678899999876655432 2   25888999998766554321


Q ss_pred             Cc--cccCeEEEEEcCCCCE
Q 023018          233 PY--HTEGLTCLTISADSTL  250 (288)
Q Consensus       233 ~~--~~~~v~~~~~~~~~~~  250 (288)
                      ..  ....-....|+|+|..
T Consensus       300 ~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         300 SEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             CSSCCCCCCCCCEECTTSCS
T ss_pred             CCceEeccCCceeEccCCCe
Confidence            10  0011123578888864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.41  E-value=0.00016  Score=57.75  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=121.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeeccc---------------------------------------cCcE--EEEEEe
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQGH---------------------------------------KDSV--SSLAFS  116 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------------------------------~~~i--~~~~~~  116 (288)
                      ..|.+|+..|.|+|+-+.+++.+..+...                                       .+..  -.+++.
T Consensus        14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T   93 (459)
T d1fwxa2          14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   93 (459)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred             EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence            35677889999999999988776655100                                       0111  134443


Q ss_pred             ---cCCCEEEEEe-CCCeEEEEeCCCCceeEEeccC-CCCEEEEEEcC--CCCEEEEecCC------------------C
Q 023018          117 ---MDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHP--RGHIVLAGSED------------------S  171 (288)
Q Consensus       117 ---~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~d------------------g  171 (288)
                         +||++|++.. .++.|.+.|+.+.+....+..+ ...+..+...+  +-.+++.++..                  +
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence               2688877765 6789999999999876654432 33567777755  44477766552                  2


Q ss_pred             eEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCC---------------eE---------------------
Q 023018          172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA---------------TL---------------------  215 (288)
Q Consensus       172 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg---------------~i---------------------  215 (288)
                      .+.++|..+.+....+.. ......+.++|+|+++++.+.+.               .+                     
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            367889988887766653 34566789999999998876432               12                     


Q ss_pred             --EEEeCCCC---ceeEEEcCCCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 023018          216 --RVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT  267 (288)
Q Consensus       216 --~i~d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~t  267 (288)
                        .+.|.+..   ..+..+.    -......+..+|||+++++++. +.++.++|+++
T Consensus       253 gV~VVD~~~~~~~~v~~yIP----VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CceeecccccCCcceeEEEe----cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence              33333321   1112222    2234567899999999887654 88999999963

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=0.00023  Score=54.10  Aligned_cols=210  Identities=8%  Similarity=0.006  Sum_probs=132.2

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe----eeEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCC
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPS  137 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~  137 (288)
                      ....+.+++|.+..+.+..+-...+.|...++....    ....+......+..+++.+.+..|..+ ...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445678999998555566555566777766664321    112222223456678888766655555 456789999988


Q ss_pred             CCceeEEeccCCCCEEEEEEcCCCCEEEEec--CCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEE-eCCCe
Q 023018          138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDAT  214 (288)
Q Consensus       138 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~-~~dg~  214 (288)
                      .......+.........++++|...+|+...  ..+.|...++............-.....+++.+.++.|+.+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            7665555555556789999999655555443  34567777775444333333333567899999988877766 45678


Q ss_pred             EEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       215 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |...++........+.... .......+++. .+.+..+-..++.|+..+..+|+....+
T Consensus       188 I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         188 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEETTSCSCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEECCCCCEEEEEeCCC-cccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            9999986544433333221 22345677776 3444445456789999998888766554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.13  E-value=0.00031  Score=56.14  Aligned_cols=188  Identities=12%  Similarity=0.106  Sum_probs=120.0

Q ss_pred             cEEEEEeCCCeEEEEEccCCeeeEeecc-ccCcEEEEEEe--cCCCEEEEEeCC------------------CeEEEEeC
Q 023018           78 TLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFS--MDGQLLASGGLD------------------GLVQIWDP  136 (288)
Q Consensus        78 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~d------------------g~i~i~d~  136 (288)
                      .+++.-..+++|.+-|+.+.+....+.. ....+..+...  |+..|++..+..                  +.+.++|.
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~  180 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  180 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEec
Confidence            3445556789999999999887654432 34456666665  455588777653                  23677899


Q ss_pred             CCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCC---------------eEEEE-----------------------EC
Q 023018          137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS---------------TVWMW-----------------------NA  178 (288)
Q Consensus       137 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~i~-----------------------d~  178 (288)
                      .+.+....+.... ....+.++++|+++++.+.+.               .+.++                       |.
T Consensus       181 ~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~  259 (459)
T d1fwxa2         181 DKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  259 (459)
T ss_dssp             TTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             CCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecc
Confidence            8888777666443 467789999999988876431               23333                       33


Q ss_pred             Ccc---cEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCce--------eEEEcCCCccccCeEEEEEcC
Q 023018          179 DRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGEN--------IHVIRGHPYHTEGLTCLTISA  246 (288)
Q Consensus       179 ~~~---~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~v~~~~~~~  246 (288)
                      +..   ..+..+.. ......+..+|||+++++++ .+.++.|+|++.-..        ...+.......-.....+|+.
T Consensus       260 ~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~  338 (459)
T d1fwxa2         260 RKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG  338 (459)
T ss_dssp             SGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT
T ss_pred             cccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC
Confidence            321   11112221 23356789999999987766 588999999863211        011111111334456678988


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 023018          247 DSTLALSGSKDGSVHMVNITT  267 (288)
Q Consensus       247 ~~~~l~~~~~dg~i~iwd~~t  267 (288)
                      .|....+.--|.+|.-|++..
T Consensus       339 ~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         339 RGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             TSEEEEEETTTTEEEEEEHHH
T ss_pred             CceEEEEeeccceEEEEecch
Confidence            887666777899999999853

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.08  E-value=0.00082  Score=56.83  Aligned_cols=185  Identities=11%  Similarity=0.088  Sum_probs=115.3

Q ss_pred             CCeEEEEEccCCeeeEeeccc-------------------------------------cCcE-EEEEEecCCCEEEEEeC
Q 023018           86 DDKGFFWRINQGDWASEIQGH-------------------------------------KDSV-SSLAFSMDGQLLASGGL  127 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~-------------------------------------~~~i-~~~~~~~~~~~l~~~~~  127 (288)
                      .|.|+-+|+.+++.+-++...                                     ...+ ...++.+....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            678999999999887765311                                     0111 23455666666655543


Q ss_pred             ----------------CCeEEEEeCCCCceeEEeccCCC---------CEEEEEEcCCCC---EEEEecCCCeEEEEECC
Q 023018          128 ----------------DGLVQIWDPSSGNLKCTLEGPGG---------GVEWVSWHPRGH---IVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       128 ----------------dg~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~  179 (288)
                                      ...+.-.|+.+++.+..++....         .........+++   .++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence                            34677789999998877764221         111112222343   56778899999999999


Q ss_pred             cccEEEEeeccC-------------------------------------C--CeEEEEEcCCCCEEEEEeCC--------
Q 023018          180 RAAYLNMFSGHG-------------------------------------S--SVTCGDFTPDGKTICTGSDD--------  212 (288)
Q Consensus       180 ~~~~~~~~~~~~-------------------------------------~--~i~~~~~~p~~~~l~~~~~d--------  212 (288)
                      +++++...+...                                     +  .-...+++|....+++...+        
T Consensus       335 tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~  414 (571)
T d2ad6a1         335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF  414 (571)
T ss_dssp             TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred             CCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccc
Confidence            988764322100                                     0  00124667766666554322        


Q ss_pred             -----------------------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          213 -----------------------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       213 -----------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                                                   |.|.-+|+.+|+.+......    .+..+-.....+.++++|+.||.++.+
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~----~~~~~g~l~TagglVf~G~~dg~l~A~  490 (571)
T d2ad6a1         415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKAL  490 (571)
T ss_dssp             CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             cccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC----CCCCcceeEecCCEEEEECCCCeEEEE
Confidence                                         46778888888877666532    111111122246688889999999999


Q ss_pred             EcCCCcEEEEe
Q 023018          264 NITTGKVCCLN  274 (288)
Q Consensus       264 d~~t~~~~~~~  274 (288)
                      |.+||+.+..+
T Consensus       491 Da~tGe~lW~~  501 (571)
T d2ad6a1         491 DNKDGKELWNF  501 (571)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            99999999876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=0.001  Score=50.24  Aligned_cols=184  Identities=9%  Similarity=-0.039  Sum_probs=116.8

Q ss_pred             CeEEEEEccCCee-----eEeeccccCcEEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCC
Q 023018           87 DKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMDGQLLASG-GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR  160 (288)
Q Consensus        87 g~i~iw~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  160 (288)
                      +.|+-..+.....     ...+..+...+..++|.+..+.|+.+ ...+.|+..++........+......+..+++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            5676667654321     12233344457789999877766665 45688998888776655555544456899999875


Q ss_pred             CCEEE-EecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEEcCCCccc
Q 023018          161 GHIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHT  236 (288)
Q Consensus       161 ~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~  236 (288)
                      +..|+ +-...+.|.+.++........+......+..+++.|...+|+.....   +.|.--++..... ..+...  ..
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~--~~  166 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD--NL  166 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT--TC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeee--cc
Confidence            55554 55567899999987654333333334578999999977777655432   2354445643333 333221  33


Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEE
Q 023018          237 EGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVCCL  273 (288)
Q Consensus       237 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~~~  273 (288)
                      .....+++.+.++.|+.+ ...+.|...++..+.....
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v  204 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE
Confidence            456889999877766555 4578899999876554433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.05  E-value=6.5e-05  Score=57.15  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             EEcCC--CCEEEEecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCCceeE
Q 023018          156 SWHPR--GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D-----ATLRVWNPKSGENIH  227 (288)
Q Consensus       156 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~-d-----g~i~i~d~~~~~~~~  227 (288)
                      ..+|+  |+.++..+. |.|+++|+.+++.. .+..+...+...+|||||++|+.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35677  888877654 78999999888754 45556677889999999999886542 2     247888887776544


Q ss_pred             EEcCCC---ccccCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcEEEEe
Q 023018          228 VIRGHP---YHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       228 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~t~~~~~~~  274 (288)
                      ......   ..........|+|+|+.|+....      ...+...+..++......
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN  138 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec
Confidence            322110   01234567899999998887533      224666677666554433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=0.0023  Score=48.40  Aligned_cols=185  Identities=11%  Similarity=0.082  Sum_probs=117.0

Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEeccC
Q 023018           70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEGP  148 (288)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~  148 (288)
                      .-.+| ..+.+|.-+ ..++.++|+++.+.++.+.- ..+|.--.|-.+ +.|+..+ +..|+-|++... .+.+.+..|
T Consensus        68 AIMhP-~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          68 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            44678 667777665 46899999999999888874 456666677644 3555554 467999998543 455555543


Q ss_pred             C----CCEEEEEEcCCCCEEEEecC-------CCeEEEEECCcccEEEEeec----------------------------
Q 023018          149 G----GGVEWVSWHPRGHIVLAGSE-------DSTVWMWNADRAAYLNMFSG----------------------------  189 (288)
Q Consensus       149 ~----~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~----------------------------  189 (288)
                      .    ..|-.-..+++.++++..+-       .|.+.+|..+.+.. +.+.+                            
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            2    35666677777887665431       35677887654311 00000                            


Q ss_pred             --------------------------------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCcccc
Q 023018          190 --------------------------------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE  237 (288)
Q Consensus       190 --------------------------------~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  237 (288)
                                                      ...-..++..++.-..++.-+.-|.|++||+.++.++..-+-   ...
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI---s~~  298 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGE  298 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSS
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec---CCC
Confidence                                            011233455555556788889999999999999998877664   345


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 023018          238 GLTCLTISADSTLALSGSKDGSVHMV  263 (288)
Q Consensus       238 ~v~~~~~~~~~~~l~~~~~dg~i~iw  263 (288)
                      .|...+-.....-+++....|.|...
T Consensus       299 ~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         299 TIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             ceEEeccCCCCceEEEECCCCeEEEE
Confidence            55544445444455555677766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.0023  Score=48.27  Aligned_cols=180  Identities=11%  Similarity=0.010  Sum_probs=115.3

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEe-CCCeEEEEeCCCC----ceeEEeccCCCCEEEEEEcCCC
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRG  161 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~  161 (288)
                      ..|+-.++.+......+. ....+.++.|++..+.|.-+. ..+.|.-.++...    .....+......+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            458888887765544444 445667899998887776654 5567776666432    1222233333457788988755


Q ss_pred             CEEE-EecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCCCccccC
Q 023018          162 HIVL-AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--DDATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       162 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                      ..|+ +-...+.|.+.++........+.........+++.|...+|+...  ..+.|.-.++.... ...+...  ....
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~--~~~~  165 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTE--NIQW  165 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECS--SCSC
T ss_pred             ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eeccccc--ccce
Confidence            5444 445668899999977665555555556789999999777776554  33467777775433 3333321  3355


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcE
Q 023018          239 LTCLTISADSTLALSG-SKDGSVHMVNITTGKV  270 (288)
Q Consensus       239 v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~  270 (288)
                      ...+++.+.+..|+.+ ...+.|...++....+
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence            7889999877666655 5568899999876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.88  E-value=0.0041  Score=52.70  Aligned_cols=185  Identities=12%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             CCeEEEEEccCCeeeEeecccc-------------------------------------C-cEEEEEEecCCCEEEEEeC
Q 023018           86 DDKGFFWRINQGDWASEIQGHK-------------------------------------D-SVSSLAFSMDGQLLASGGL  127 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~-------------------------------------~-~i~~~~~~~~~~~l~~~~~  127 (288)
                      .|.|+-+|..+++.+-++....                                     . .-..+++.+...++..+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            4889999999999887653110                                     0 1123455666666655532


Q ss_pred             ----------------CCeEEEEeCCCCceeEEeccCC---------CCEEEEEE-cCCCC---EEEEecCCCeEEEEEC
Q 023018          128 ----------------DGLVQIWDPSSGNLKCTLEGPG---------GGVEWVSW-HPRGH---IVLAGSEDSTVWMWNA  178 (288)
Q Consensus       128 ----------------dg~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~-~~~~~---~l~~~~~dg~i~i~d~  178 (288)
                                      ...|.-.|+.+++.+..++...         ..+..+.. ..+++   .++.+.++|.++++|-
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            2457778999999887765321         11222222 22343   6777889999999999


Q ss_pred             CcccEEEEeeccC-------------CCe--------------------------EEEEEcCCCCEEEEEeC--------
Q 023018          179 DRAAYLNMFSGHG-------------SSV--------------------------TCGDFTPDGKTICTGSD--------  211 (288)
Q Consensus       179 ~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~p~~~~l~~~~~--------  211 (288)
                      .+++++.......             .++                          ..++++|...+++....        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9988775432100             000                          12355565555544321        


Q ss_pred             -------------------------------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 023018          212 -------------------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV  260 (288)
Q Consensus       212 -------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  260 (288)
                                                     -|.|.-||+.+++.+.....    ..++.+-.++..+.+++.|+.||.+
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~----~~~~~gg~lsTagglVF~G~~Dg~l  496 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME----RFAVWGGTMATAGDLVFYGTLDGYL  496 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC----CCCCccceeEecCCEEEEECCCCeE
Confidence                                           14677888888887665542    1222222223356788889999999


Q ss_pred             EEEEcCCCcEEEEe
Q 023018          261 HMVNITTGKVCCLN  274 (288)
Q Consensus       261 ~iwd~~t~~~~~~~  274 (288)
                      +.+|..||+.+..+
T Consensus       497 ~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         497 KARDSDTGDLLWKF  510 (596)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCcEeeEE
Confidence            99999999999876

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.83  E-value=0.0018  Score=54.57  Aligned_cols=184  Identities=14%  Similarity=0.185  Sum_probs=115.6

Q ss_pred             CeEEEEEccCCeeeEeeccc------------------------------cCcE-EEEEEecCCCEEEEEeC--------
Q 023018           87 DKGFFWRINQGDWASEIQGH------------------------------KDSV-SSLAFSMDGQLLASGGL--------  127 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~------------------------------~~~i-~~~~~~~~~~~l~~~~~--------  127 (288)
                      |.|.-+|..+++.+-++..-                              ...+ ..+++.+...+++.+..        
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            67999999999887766310                              1111 12455666665554321        


Q ss_pred             -----------CCeEEEEeCCCCceeEEeccCCCC---------EEEEEEcCCC---CEEEEecCCCeEEEEECCcccEE
Q 023018          128 -----------DGLVQIWDPSSGNLKCTLEGPGGG---------VEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYL  184 (288)
Q Consensus       128 -----------dg~i~i~d~~~~~~~~~~~~~~~~---------i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~  184 (288)
                                 ...|.-.|+.+++....++.....         ..-+....++   ..++.++.+|.++++|-.+++++
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                       245777799999887766542211         1112222233   26777889999999999999877


Q ss_pred             EEeeccC------------------------CC------------eEEEEEcCCCCEEEEEeC-----------------
Q 023018          185 NMFSGHG------------------------SS------------VTCGDFTPDGKTICTGSD-----------------  211 (288)
Q Consensus       185 ~~~~~~~------------------------~~------------i~~~~~~p~~~~l~~~~~-----------------  211 (288)
                      .......                        ..            -...+++|+...++....                 
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            5432110                        00            013456776666665432                 


Q ss_pred             -------------------CCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          212 -------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       212 -------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                                         .|.|.-||+.+++.+......    .+..+-.+.-.+.++++|+.||.++.+|..||+.+.
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~----~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC----CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence                               246788899999887776532    222222233356788899999999999999999998


Q ss_pred             Ee
Q 023018          273 LN  274 (288)
Q Consensus       273 ~~  274 (288)
                      .+
T Consensus       494 ~~  495 (560)
T d1kv9a2         494 QF  495 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.68  E-value=0.0084  Score=50.51  Aligned_cols=141  Identities=12%  Similarity=0.216  Sum_probs=88.2

Q ss_pred             eEEEEeCCCCceeEEeccCC---------CCEEEEEEcCCC---CEEEEecCCCeEEEEECCcccEEEEeeccCC-----
Q 023018          130 LVQIWDPSSGNLKCTLEGPG---------GGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-----  192 (288)
Q Consensus       130 ~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  192 (288)
                      .|.-.|+.+++....++...         .+........++   ..++.++.+|.++++|..+++.+........     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            46667888888776654321         111222222233   3677888999999999999987654431100     


Q ss_pred             ------------------------------CeEEEEEcCCCCEEEEEeCC------------------------------
Q 023018          193 ------------------------------SVTCGDFTPDGKTICTGSDD------------------------------  212 (288)
Q Consensus       193 ------------------------------~i~~~~~~p~~~~l~~~~~d------------------------------  212 (288)
                                                    .-..++++|+...++....+                              
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  443 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccc
Confidence                                          01124567766666553322                              


Q ss_pred             -------------CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          213 -------------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 -------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                                   |.|.-||+.+++.+.......    +...-..+-.+.+|++|+.||.++.+|..||+.+..+
T Consensus       444 ~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~----p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCCCCCCCcccEEEeCCCCCceEeeecCCC----CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence                         357778888888777665321    1111122335778889999999999999999999876

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.63  E-value=0.0032  Score=53.01  Aligned_cols=165  Identities=13%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             CeEEEEEccCCeeeEeeccccCcE---------EEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeEEeccCC-----
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSV---------SSLAFSMDGQ---LLASGGLDGLVQIWDPSSGNLKCTLEGPG-----  149 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  149 (288)
                      ..|.-.|+.+++.+..++.....+         .-+....+++   .++.+..+|.+.++|..+++.+...+...     
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            356677888888766654322111         1122223443   56778899999999999998765432110     


Q ss_pred             -----------------------------C--CEEEEEEcCCCCEEEEecC-----------------------------
Q 023018          150 -----------------------------G--GVEWVSWHPRGHIVLAGSE-----------------------------  169 (288)
Q Consensus       150 -----------------------------~--~i~~~~~~~~~~~l~~~~~-----------------------------  169 (288)
                                                   +  .-...+++|+...+++...                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                         0  0013456666555554321                             


Q ss_pred             -------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEE
Q 023018          170 -------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL  242 (288)
Q Consensus       170 -------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~  242 (288)
                             .|.|.-||+.+++.+..+... .+...-.++-.+.++++|+.||.++.||..+|+.+..+..........  +
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~  506 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--M  506 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--E
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--E
Confidence                   256888899998887766532 222221223346788899999999999999999998887543222222  4


Q ss_pred             EEcCCCC-EEEEE
Q 023018          243 TISADST-LALSG  254 (288)
Q Consensus       243 ~~~~~~~-~l~~~  254 (288)
                      .+..+|+ +|++.
T Consensus       507 ty~~dGkqyv~v~  519 (560)
T d1kv9a2         507 TFELAGRQYVAIM  519 (560)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEECCEEEEEEE
Confidence            5555774 55443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.57  E-value=0.0087  Score=50.37  Aligned_cols=164  Identities=14%  Similarity=0.088  Sum_probs=97.1

Q ss_pred             CeEEEEEccCCeeeEeeccccC---------cEEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeEEeccCC-----
Q 023018           87 DKGFFWRINQGDWASEIQGHKD---------SVSSLAFSMDGQ---LLASGGLDGLVQIWDPSSGNLKCTLEGPG-----  149 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  149 (288)
                      ..+...|..+++.+..++....         +.....+..+++   .++.++.+|.++++|..+++.+...+...     
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4577778888887776653211         111122233443   46778899999999999998764321100     


Q ss_pred             --------------------------------CC--EEEEEEcCCCCEEEEecC--------------------------
Q 023018          150 --------------------------------GG--VEWVSWHPRGHIVLAGSE--------------------------  169 (288)
Q Consensus       150 --------------------------------~~--i~~~~~~~~~~~l~~~~~--------------------------  169 (288)
                                                      +.  -...+++|....+++...                          
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                            00  012456666555554322                          


Q ss_pred             -----------CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccC
Q 023018          170 -----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG  238 (288)
Q Consensus       170 -----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  238 (288)
                                 .|.|.-+|+.+++.+.+.... .+..+-.++-.+.++++++.||.++.+|.++|+.+..+........ 
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a-  509 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG-  509 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS-
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee-
Confidence                       146777888888877665422 1111111122466888899999999999999999988864321222 


Q ss_pred             eEEEEEcCCCC-EEEE
Q 023018          239 LTCLTISADST-LALS  253 (288)
Q Consensus       239 v~~~~~~~~~~-~l~~  253 (288)
                       .-+.|..+|+ ++++
T Consensus       510 -~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         510 -SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             -CCEEEEETTEEEEEE
T ss_pred             -cceEEEECCEEEEEE
Confidence             1245555775 4444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.48  E-value=0.01  Score=49.99  Aligned_cols=58  Identities=22%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             CeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       213 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                      |.|.-+|+.+|+.+......    .++..-..+..+.++++|+.||.++.+|..||+.+..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~----~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC----CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            56888899999887776632    22222123345778889999999999999999999876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.44  E-value=0.025  Score=47.69  Aligned_cols=199  Identities=17%  Similarity=0.183  Sum_probs=121.3

Q ss_pred             CCcEEEEEeCCCeEEEEEc-cCCeeeEeecccc----------C-cEEEEEEecC----CCEEEEEeCCCeEEEEeCCCC
Q 023018           76 DATLVATGGGDDKGFFWRI-NQGDWASEIQGHK----------D-SVSSLAFSMD----GQLLASGGLDGLVQIWDPSSG  139 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~----------~-~i~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~  139 (288)
                      ++.++++++..+.+...+. .+++.+-++....          . .-+.+++.+.    ..+++.++.|+.|.-.|..++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4445555555677877786 4688777653110          0 0123444432    336888899999999999999


Q ss_pred             ceeEEeccCCCCE-EEEEEcC--CCCEEEEecC------CCeEEEEECCcccEEEEeeccC-------------------
Q 023018          140 NLKCTLEGPGGGV-EWVSWHP--RGHIVLAGSE------DSTVWMWNADRAAYLNMFSGHG-------------------  191 (288)
Q Consensus       140 ~~~~~~~~~~~~i-~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~-------------------  191 (288)
                      +.+..+....... ..+.-.|  -+..++++..      .|.|+-+|.++++.+.++....                   
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g  221 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence            9888775321100 0111112  2345666543      4899999999999987764210                   


Q ss_pred             ------------------C-CeEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCceeEEEcCCCc--
Q 023018          192 ------------------S-SVTCGDFTPDGKTICTGSDD----------------ATLRVWNPKSGENIHVIRGHPY--  234 (288)
Q Consensus       192 ------------------~-~i~~~~~~p~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~~--  234 (288)
                                        . .-..+++.+...+++.+..+                ..|.-.|+.+|+.+..++....  
T Consensus       222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~  301 (596)
T d1w6sa_         222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (596)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence                              0 11234566666677666432                3477889999998877654321  


Q ss_pred             ----cccCeEEEEE-cCCC---CEEEEEeCCCcEEEEEcCCCcEEEEe
Q 023018          235 ----HTEGLTCLTI-SADS---TLALSGSKDGSVHMVNITTGKVCCLN  274 (288)
Q Consensus       235 ----~~~~v~~~~~-~~~~---~~l~~~~~dg~i~iwd~~t~~~~~~~  274 (288)
                          ....+.-+.. ..+|   ..++....+|.++++|-.+|+++...
T Consensus       302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence                0111222222 2244   46778899999999999999998653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=0.015  Score=43.89  Aligned_cols=181  Identities=14%  Similarity=0.194  Sum_probs=114.5

Q ss_pred             CeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEEE
Q 023018           87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA  166 (288)
Q Consensus        87 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  166 (288)
                      ..|.|-|+.+.....+..-   ..-+.-.+|..+.||.-+ ..++.++|+++.+.++.+.-... |.-=.|-. .+.|+.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~-VvfWkWis-~~~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWIS-LNTVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEESS-SSEEEE
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC-cEEEEecC-CCEEEE
Confidence            4678888876543222221   112445678888777766 56899999999998888776654 54445653 345555


Q ss_pred             ecCCCeEEEEECCcc-cEEEEeecc----CCCeEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCc----------
Q 023018          167 GSEDSTVWMWNADRA-AYLNMFSGH----GSSVTCGDFTPDGKTICTGS-------DDATLRVWNPKSGE----------  224 (288)
Q Consensus       167 ~~~dg~i~i~d~~~~-~~~~~~~~~----~~~i~~~~~~p~~~~l~~~~-------~dg~i~i~d~~~~~----------  224 (288)
                      .+. ..|+-|++... .+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|....+.          
T Consensus       119 VT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~  197 (327)
T d1utca2         119 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAS  197 (327)
T ss_dssp             ECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEE
T ss_pred             EcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeee
Confidence            544 67999999543 455656544    34677777777777765432       13456677664321          


Q ss_pred             --------------------------eeEEEcC--------------------CCccccCeEEEEEcCCCCEEEEEeCCC
Q 023018          225 --------------------------NIHVIRG--------------------HPYHTEGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       225 --------------------------~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                                                .++.+..                    ......-..++..++.-.+++..+.-|
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G  277 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG  277 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCc
Confidence                                      0011100                    001123345677777777888889999


Q ss_pred             cEEEEEcCCCcEEEEe
Q 023018          259 SVHMVNITTGKVCCLN  274 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~~  274 (288)
                      .|++||+.||.++..-
T Consensus       278 ~i~lyDleTgt~i~~n  293 (327)
T d1utca2         278 YIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             EEEEEEcccccEEEEe
Confidence            9999999999999865

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.38  E-value=0.016  Score=48.80  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC-
Q 023018          171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-  249 (288)
Q Consensus       171 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  249 (288)
                      |.+.-||+.+++.+..+.... +...-..+-.+.++++|+.||.++.||.++|+.+..+..........  +.|..+|+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEE
Confidence            357778888888777665322 21111122357788899999999999999999998887543222222  44555775 


Q ss_pred             EEEE
Q 023018          250 LALS  253 (288)
Q Consensus       250 ~l~~  253 (288)
                      ++++
T Consensus       534 Yv~v  537 (573)
T d1kb0a2         534 YVSV  537 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.31  E-value=0.028  Score=45.31  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=61.8

Q ss_pred             CCCCEEEEEEcCCCCcEEEEEeCCC----eEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCC----------
Q 023018           63 HSDEVYSVACSPTDATLVATGGGDD----KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD----------  128 (288)
Q Consensus        63 h~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------  128 (288)
                      +.-.+..++++|++..++++-+..|    .|++.|+.+++.+...-.. .....++|.++++.|+....+          
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            3334556788994444444444444    6999999999876532211 122468899999977654322          


Q ss_pred             ------CeEEEEeCCCCce--eEEeccCC--CCEEEEEEcCCCCEEEE
Q 023018          129 ------GLVQIWDPSSGNL--KCTLEGPG--GGVEWVSWHPRGHIVLA  166 (288)
Q Consensus       129 ------g~i~i~d~~~~~~--~~~~~~~~--~~i~~~~~~~~~~~l~~  166 (288)
                            ..|..+.+.+...  ...+....  ..+..+..++++++++.
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                  2577777776532  23333322  34566777888887654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.029  Score=44.27  Aligned_cols=176  Identities=8%  Similarity=-0.064  Sum_probs=101.8

Q ss_pred             CEEEEEEcCCCCcEEEEEeCCCeEEEEEccC-----------CeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEE
Q 023018           66 EVYSVACSPTDATLVATGGGDDKGFFWRINQ-----------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW  134 (288)
Q Consensus        66 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  134 (288)
                      ...-++.++ ...++++|+.++ ++|..+..           .......  .-..|..++|+.+  .|++.. ++.+..+
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~~-~~~l~~~  110 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVST-RNALYSL  110 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEEe-CCCEEEE
Confidence            355678887 445666777664 66766432           1111111  1235888999744  555543 5668888


Q ss_pred             eCCCCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEEee-----ccCCCeEEEEEcCCCCEEEEE
Q 023018          135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTG  209 (288)
Q Consensus       135 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~l~~~  209 (288)
                      +...-...........++..+.++|.  .++....+|.+.++++..++......     ...+.+.+++|++.|..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            87765555554545567888888874  56666778999999998875433221     123557777777777777766


Q ss_pred             eCCCeEEEE-eCCCCceeEEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          210 SDDATLRVW-NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       210 ~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                      ..++ ..+. ++...   ..+.........+.++.|-.+..++++-
T Consensus       189 ~g~~-~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         189 RNGE-MEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ETTE-EEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCCc-eeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            4321 1111 11110   0112111134467889998776666554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.21  E-value=0.013  Score=46.16  Aligned_cols=152  Identities=14%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             CCCCcEEEEEeCCC-----------eEEEEEccCCeeeEe--e-ccccCcEEEEEEecCCCEEEEEeCC-CeEEEEeCCC
Q 023018           74 PTDATLVATGGGDD-----------KGFFWRINQGDWASE--I-QGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSS  138 (288)
Q Consensus        74 ~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  138 (288)
                      +.++++++.|+.+.           .+.+||..+++....  . ..+.......++.+++++++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            33778888877531           377999988764332  1 1233333456788999988888654 5899999887


Q ss_pred             CceeEEeccC-CCCEEEEEEcCCCCEEEEecCC------CeEEEEECCcccEEEE--ee------c-cC-----CCeEEE
Q 023018          139 GNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FS------G-HG-----SSVTCG  197 (288)
Q Consensus       139 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~------~-~~-----~~i~~~  197 (288)
                      ......-... ...-...+..+++++++.|+..      ..+.+||..+.+-...  ..      . +.     ..-..+
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL  187 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE
T ss_pred             CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEE
Confidence            7543321111 1123456677789999988753      3689999887642211  00      0 00     001112


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 023018          198 DFTPDGKTICTGSDDATLRVWNPKSGEN  225 (288)
Q Consensus       198 ~~~p~~~~l~~~~~dg~i~i~d~~~~~~  225 (288)
                      ...++++.++.+...+.+.+++..+...
T Consensus       188 ~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         188 FGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             EECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             EEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            2345677777777777888888776643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.0089  Score=50.45  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             CCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcCCCC
Q 023018          170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST  249 (288)
Q Consensus       170 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (288)
                      .|.|.-+|+.+++.+.....+ .++..-.++..+.++++|+.||.++.||..+|+.+..+..........  +.|..+|+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            367888999999888777643 222221233457788899999999999999999998887543222222  56667784


Q ss_pred             -EEEE
Q 023018          250 -LALS  253 (288)
Q Consensus       250 -~l~~  253 (288)
                       ++++
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.03  E-value=0.044  Score=42.96  Aligned_cols=163  Identities=15%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             cEEEEEEecCCCEEEEEeCC-----C------eEEEEeCCCCceeE--Eec-cCCCCEEEEEEcCCCCEEEEecCC-CeE
Q 023018          109 SVSSLAFSMDGQLLASGGLD-----G------LVQIWDPSSGNLKC--TLE-GPGGGVEWVSWHPRGHIVLAGSED-STV  173 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~d-----g------~i~i~d~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d-g~i  173 (288)
                      ++.......+++.++.|+.+     +      .+.+||..+++...  ... .+.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            33444445577777777642     1      37789998875432  222 222334566788999999998765 589


Q ss_pred             EEEECCcccEEEEeec-cCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeEEEcCCCcc-----------
Q 023018          174 WMWNADRAAYLNMFSG-HGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYH-----------  235 (288)
Q Consensus       174 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~p~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~-----------  235 (288)
                      .+||..+..-...-.. ....-..++..++|++++.|+..      ..+.+||+.+.+- ..+......           
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-TSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-EEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce-eecCCCccccccccccccee
Confidence            9999987653322111 11122456677899998888753      3589999987643 222211000           


Q ss_pred             -ccCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE
Q 023018          236 -TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVCC  272 (288)
Q Consensus       236 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~t~~~~~  272 (288)
                       ...-..+...+++.+++.++..+.+.+++..+.....
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~  217 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  217 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence             0011112334567777777777788888877765443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.57  E-value=0.11  Score=40.40  Aligned_cols=195  Identities=13%  Similarity=0.147  Sum_probs=113.4

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEec----CCC--EEEEEe-CC---CeEEEEeCCC-CceeEE
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM----DGQ--LLASGG-LD---GLVQIWDPSS-GNLKCT  144 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~----~~~--~l~~~~-~d---g~i~i~d~~~-~~~~~~  144 (288)
                      ...+++.....+-|++|++. ++.+..+.  .+.++.+..-.    .++  -|++++ ++   -+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34566666777779999986 66666664  34555555432    222  344444 22   3677887642 233333


Q ss_pred             eccC-------CCCEEEEEE--cCC-CC-EEEEecCCCeEEEEECC---cc----cEEEEeeccCCCeEEEEEcCCCCEE
Q 023018          145 LEGP-------GGGVEWVSW--HPR-GH-IVLAGSEDSTVWMWNAD---RA----AYLNMFSGHGSSVTCGDFTPDGKTI  206 (288)
Q Consensus       145 ~~~~-------~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~p~~~~l  206 (288)
                      +...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.+. ....+..+.+.+....|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence            3221       123566666  663 44 45666778998888663   22    3455554 45678889999998999


Q ss_pred             EEEeCCCeEEEEeCC--CCceeEEE--cCCCccccCeEEEEEcC--C--CCEEEEEeCCCcEEEEEcCCC-cEEEEe
Q 023018          207 CTGSDDATLRVWNPK--SGENIHVI--RGHPYHTEGLTCLTISA--D--STLALSGSKDGSVHMVNITTG-KVCCLN  274 (288)
Q Consensus       207 ~~~~~dg~i~i~d~~--~~~~~~~~--~~~~~~~~~v~~~~~~~--~--~~~l~~~~~dg~i~iwd~~t~-~~~~~~  274 (288)
                      +.+-.+..|..++..  .......+  ........-+-.|+.-.  +  |-+|++.-.+++..+||..+. +.+..+
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            999888777666653  22221211  11111345566666543  3  334444445789999998773 555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.38  E-value=0.14  Score=39.60  Aligned_cols=155  Identities=15%  Similarity=0.088  Sum_probs=87.7

Q ss_pred             EEEEEecCCCEEEEEeC------------CCeEEEEeCCCCceeE-Ee--ccC-----CCCEEEEEE--cCCCC-EEEEe
Q 023018          111 SSLAFSMDGQLLASGGL------------DGLVQIWDPSSGNLKC-TL--EGP-----GGGVEWVSW--HPRGH-IVLAG  167 (288)
Q Consensus       111 ~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~-~~--~~~-----~~~i~~~~~--~~~~~-~l~~~  167 (288)
                      -++...|+|..+++++.            .|.|.++|+.+.+... .+  ...     .-....+..  .+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            45677777765555431            4889999987654322 11  111     112344444  34555 34443


Q ss_pred             ---cCCCeEEEEECCccc--EE--EEeec-cCCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCC
Q 023018          168 ---SEDSTVWMWNADRAA--YL--NMFSG-HGSSVTCGDFTPDGKTICTGS-----------------DDATLRVWNPKS  222 (288)
Q Consensus       168 ---~~dg~i~i~d~~~~~--~~--~~~~~-~~~~i~~~~~~p~~~~l~~~~-----------------~dg~i~i~d~~~  222 (288)
                         ....+|.+|++....  ..  ..+.. .......+.+..++.+++|-.                 ..+.+.-||.. 
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-  196 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-  196 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-
Confidence               234678888875332  21  22221 224568888888888777731                 12234445433 


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEE
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVC  271 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~t~~~~  271 (288)
                       .......    .....+.++++|++++|+++ +..++|++|++...+.+
T Consensus       197 -~~~~~~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         197 -DVRVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             -CEEEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             -ceEEEcC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCccc
Confidence             3222222    34567899999999877655 55789999999755433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.25  E-value=0.17  Score=39.22  Aligned_cols=143  Identities=10%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcC------CCCEEEEec-C-C--CeEEEEECCc-ccEEE
Q 023018          117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP------RGHIVLAGS-E-D--STVWMWNADR-AAYLN  185 (288)
Q Consensus       117 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~-~-d--g~i~i~d~~~-~~~~~  185 (288)
                      |...+++.....+-|++||+. |+.+..+.  .+.+..+..-.      ....+++++ . +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345567776777679999985 77776664  34566555432      222344444 2 2  3577787642 23333


Q ss_pred             Eeecc-------CCCeEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC---CC----ceeEEEcCCCccccCeEEEEEcCC
Q 023018          186 MFSGH-------GSSVTCGDF--TPD-GK-TICTGSDDATLRVWNPK---SG----ENIHVIRGHPYHTEGLTCLTISAD  247 (288)
Q Consensus       186 ~~~~~-------~~~i~~~~~--~p~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~~~v~~~~~~~~  247 (288)
                      .+...       ...+..+|+  +|. +. ++++...+|.+..|.+.   .+    ..++.+.    ....+..|.+.+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~----~~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK----MNSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE----CSSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC----CCCccceEEEeCC
Confidence            33221       123556666  664 44 46667778998888653   23    2334444    3457889999998


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 023018          248 STLALSGSKDGSVHMVNIT  266 (288)
Q Consensus       248 ~~~l~~~~~dg~i~iwd~~  266 (288)
                      ...|+.+-++..|+.++..
T Consensus       191 ~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             TTEEEEEETTTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEec
Confidence            8899998887777666653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.13  E-value=0.2  Score=38.76  Aligned_cols=182  Identities=12%  Similarity=0.078  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCcEEEEEe------------CCCeEEEEEccCCeeeE-eeccc-------cCcEEEEEE--ecCCC-EEEE
Q 023018           68 YSVACSPTDATLVATGG------------GDDKGFFWRINQGDWAS-EIQGH-------KDSVSSLAF--SMDGQ-LLAS  124 (288)
Q Consensus        68 ~~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~-~~~~~-------~~~i~~~~~--~~~~~-~l~~  124 (288)
                      -.++..| ++..+++++            ..|.|.++|+.+..... .+...       .-.-..+.+  .+++. +|++
T Consensus        38 EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          38 EDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            4567777 555554443            14899999987643221 11111       112234443  34555 4555


Q ss_pred             Ee---CCCeEEEEeCCCCce-e---EEecc-CCCCEEEEEEcCCCCEEEEec-----------------CCCeEEEEECC
Q 023018          125 GG---LDGLVQIWDPSSGNL-K---CTLEG-PGGGVEWVSWHPRGHIVLAGS-----------------EDSTVWMWNAD  179 (288)
Q Consensus       125 ~~---~dg~i~i~d~~~~~~-~---~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~  179 (288)
                      ..   ...+|-+|++..... +   ..+.. .....+.+++..++.+++|-.                 ..+.+..|+..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            53   356788888754332 1   12222 224578899988888888721                 12344445443


Q ss_pred             cccEEEEeeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEEcCCCccccCeEEEEEcC-CCCEEEEE
Q 023018          180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSG  254 (288)
Q Consensus       180 ~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  254 (288)
                        .. ......-.....|+++|++++|+++. ..+.|++|++.....+....... ....+-.+.+.+ +|.+.+++
T Consensus       197 --~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 --DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             --CE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             --ce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence              32 22222335678999999998876654 57789999887543332221111 234456677776 45555444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.089  Score=39.21  Aligned_cols=174  Identities=14%  Similarity=0.166  Sum_probs=78.7

Q ss_pred             eEEEEEccCCeeeEee--ccccCcEEEEEEecCCCEEEEEeCCCe-----EEEEeCCCCceeEEecc--CCCCEEEEEEc
Q 023018           88 KGFFWRINQGDWASEI--QGHKDSVSSLAFSMDGQLLASGGLDGL-----VQIWDPSSGNLKCTLEG--PGGGVEWVSWH  158 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~--~~~~i~~~~~~  158 (288)
                      .+.+||..+.+....-  ........++.  .+++.++.++.++.     ...++..+.........  .......+. .
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~  147 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-L  147 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E
T ss_pred             hhhhcccccccccccccccceecceeccc--cceeeEEecceecccccceeeeeccccCccccccccccccccceeee-e
Confidence            5677887765544321  11111111222  25555555544333     34466655543222111  111122222 2


Q ss_pred             CCCCEEEEecCC-----CeEEEEECCcccEEEEeecc-CCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeE
Q 023018          159 PRGHIVLAGSED-----STVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKTICTGSDDA-----TLRVWNPKSGENIH  227 (288)
Q Consensus       159 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~p~~~~l~~~~~dg-----~i~i~d~~~~~~~~  227 (288)
                       .+..++.|+.+     ..+..||..+.+....-... .....++... .+..++.++.++     .+.+||..+.+.. 
T Consensus       148 -~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~-  224 (288)
T d1zgka1         148 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWT-  224 (288)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE-
T ss_pred             -eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeee-
Confidence             34566666543     35788887665432211111 1111122222 345555555432     4677887765432 


Q ss_pred             EEcCCCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 023018          228 VIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGK  269 (288)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~t~~  269 (288)
                      .+...+...... +++. .++++++.|+.++     .|.+||+.+.+
T Consensus       225 ~~~~~p~~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         225 FVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cccCccCcccce-EEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            222211111112 2232 2677888776544     48899999865

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.32  Score=38.04  Aligned_cols=139  Identities=12%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCC-----------CCceeEEeccCCCCEEEEEEcCCCCEEEEecCCCeEEEEE
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS-----------SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN  177 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  177 (288)
                      ...-+++++...++++|+.++ ++|..+.           .........  -..|..++|+.+  .+++. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            455678888777888888775 5565421           111111222  225899999754  45554 346788888


Q ss_pred             CCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--ccccCeEEEEEcCCCCEEEEEe
Q 023018          178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP--YHTEGLTCLTISADSTLALSGS  255 (288)
Q Consensus       178 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  255 (288)
                      ...-...........++..+.++|.  .++....+|.+.++++..++......+..  .-...+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7765544444445677888888874  56777789999999998876543322110  0235577788888887777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.33  E-value=0.52  Score=37.82  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=37.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEec--------cCCCCEEEEEEcCC
Q 023018          109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--------GPGGGVEWVSWHPR  160 (288)
Q Consensus       109 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~  160 (288)
                      .-++|+|.|++++|++--..|.|++++..+++......        ...+....|+++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45799999999877776457999999987775433221        12356889999994

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.03  E-value=0.19  Score=40.20  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             EEEEEEcCCCCEEEEecC-C----CeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCC--------------
Q 023018          152 VEWVSWHPRGHIVLAGSE-D----STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD--------------  212 (288)
Q Consensus       152 i~~~~~~~~~~~l~~~~~-d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~d--------------  212 (288)
                      +...+++|++++++.+-. .    -.|+++|+.+++.+...- .......+.|.++++.|+....+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            445678999998886432 2    369999999998664221 11223567899999987655432              


Q ss_pred             --CeEEEEeCCCCcee--EEEcCCCccccCeEEEEEcCCCCEEEEE
Q 023018          213 --ATLRVWNPKSGENI--HVIRGHPYHTEGLTCLTISADSTLALSG  254 (288)
Q Consensus       213 --g~i~i~d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~  254 (288)
                        ..|..+.+.+...-  ..+... .....+..+..++++++|+..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~-d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFP-DEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEECCCCccccccccccc-cCCceEEeeeccCCcceeeEE
Confidence              25777777665432  333321 123346677788999887643

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.97  E-value=0.38  Score=34.20  Aligned_cols=192  Identities=14%  Similarity=0.148  Sum_probs=110.0

Q ss_pred             CCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCC--EEEEE------eCCCeEEEEeCCCCceeEEecc
Q 023018           76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASG------GLDGLVQIWDPSSGNLKCTLEG  147 (288)
Q Consensus        76 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~------~~dg~i~i~d~~~~~~~~~~~~  147 (288)
                      +..+++++...|.+.++-+..++.+..-   ..+|.... .|...  ++...      ..-..|++.++........+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            5568888888899999998877654433   34443322 23221  22221      1122455555554333444444


Q ss_pred             CC-CCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEEE--eec-------cCCCeEEEEE-cCCCCEEEEEeC-CCeE
Q 023018          148 PG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--FSG-------HGSSVTCGDF-TPDGKTICTGSD-DATL  215 (288)
Q Consensus       148 ~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~-------~~~~i~~~~~-~p~~~~l~~~~~-dg~i  215 (288)
                      .. -.|.++++. +.+..++|+......+|-++.++....  +..       ....|..+.+ .+..+-++++.. .|.+
T Consensus       101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            44 467777775 456778888878888887777654322  111       1233444433 333344666666 7888


Q ss_pred             EEEeCCCCceeEE----------------------EcCC---------------CccccCeEEEEEcCCCCEEEEEeCCC
Q 023018          216 RVWNPKSGENIHV----------------------IRGH---------------PYHTEGLTCLTISADSTLALSGSKDG  258 (288)
Q Consensus       216 ~i~d~~~~~~~~~----------------------~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg  258 (288)
                      +|++...|..-..                      +...               ......|+.+-+.|++++++.+-.||
T Consensus       180 ri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         180 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  259 (313)
T ss_dssp             EEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCC
Confidence            8888765432110                      1000               00123466677999999989999999


Q ss_pred             cEEEEEcCCCcEEEEe
Q 023018          259 SVHMVNITTGKVCCLN  274 (288)
Q Consensus       259 ~i~iwd~~t~~~~~~~  274 (288)
                      .=++|.  +|+.+...
T Consensus       260 ~s~lF~--nGk~in~p  273 (313)
T d2hu7a1         260 RSAVFI--DGERVEAP  273 (313)
T ss_dssp             EEEEEE--TTEEECCC
T ss_pred             chheee--cceEecCC
Confidence            988886  46655544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.72  Score=33.87  Aligned_cols=176  Identities=15%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             eEEEEEccCCeeeEe--eccccCcEEEEEEecCCCEEEEEeC---------CCeEEEEeCCCCceeEEe--ccCCCCEEE
Q 023018           88 KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGL---------DGLVQIWDPSSGNLKCTL--EGPGGGVEW  154 (288)
Q Consensus        88 ~i~iw~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~--~~~~~~i~~  154 (288)
                      .+.+||+.+.+....  +........ ++. -++..++.|+.         -..+.+||..+.+....-  ........+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLA-GCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeE-EEE-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            578999988765443  221111212 222 24555565542         135678887766543321  111222223


Q ss_pred             EEEcCCCCEEEEecCCCe-----EEEEECCcccEEEEeec--cCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC
Q 023018          155 VSWHPRGHIVLAGSEDST-----VWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPKS  222 (288)
Q Consensus       155 ~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~--~~~~i~~~~~~p~~~~l~~~~~d-----g~i~i~d~~~  222 (288)
                      ..+  +++.++.++.++.     +..++..+.........  .......+ .. ....++.|+.+     ..+..||..+
T Consensus        98 ~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          98 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceee-ee-eecceEecCcccccccceEEEeeccc
Confidence            333  5666666654433     44566655432221111  11111222 22 33445555443     3578888876


Q ss_pred             CceeEEEcCCCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEE
Q 023018          223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTGKVCC  272 (288)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~t~~~~~  272 (288)
                      .+.. ...... ......++... .+.+++.|+.+     ..+..+|+.+.+...
T Consensus       174 ~~~~-~~~~~~-~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         174 NEWR-MITAMN-TIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TEEE-ECCCCS-SCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             cccc-cccccc-cccccccccce-eeeEEEecCccccccccceeeeeecceeeec
Confidence            5432 222111 11111222222 34555555443     356777877655443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=93.81  E-value=0.85  Score=33.57  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             CCEEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 023018           65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT  144 (288)
Q Consensus        65 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  144 (288)
                      ..|..++...  ...++ -. ||.|+.|-......+..-......+..++.-  ..+.+. -.||.+..|..........
T Consensus        26 ~~i~~va~G~--~h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a-l~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA-LKDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSEEEEEECS--SEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE-EETTEEEEEECCTTSTTCC
T ss_pred             CCcEEEEccC--CEEEE-EE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceee-eeeeeeeccCCCcceeecc
Confidence            3588888743  23333 34 7999999766543222222233445555432  222222 2478888887543221111


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEecCCCeEEEEECC
Q 023018          145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD  179 (288)
Q Consensus       145 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  179 (288)
                      .......+..++....  ..+. -.|+.+..|...
T Consensus        99 ~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~  130 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDD  130 (273)
T ss_dssp             CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECC
T ss_pred             ccccccceeEEeeecc--cccc-cccccceecccC
Confidence            1111223444443322  2222 236777777643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.97  E-value=1.7  Score=34.62  Aligned_cols=106  Identities=13%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             CCCEEEEEEcCCCCEEEEecCCCeEEEEECCcccEEE--Eee------ccCCCeEEEEEcCC---CCEEEEEeC------
Q 023018          149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFS------GHGSSVTCGDFTPD---GKTICTGSD------  211 (288)
Q Consensus       149 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~------~~~~~i~~~~~~p~---~~~l~~~~~------  211 (288)
                      -...++|+|.|++++|++--..|.|++++..++....  .+.      .-......|+++|+   ..+|+.+..      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3468899999999988887667999999887765332  221      12356789999994   345544321      


Q ss_pred             -C----Ce--EEEEeCCCCce--------eEEEcCCCccccCeEEEEEcCCCCEEEEEeC
Q 023018          212 -D----AT--LRVWNPKSGEN--------IHVIRGHPYHTEGLTCLTISADSTLALSGSK  256 (288)
Q Consensus       212 -d----g~--i~i~d~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  256 (288)
                       +    ..  +..+.......        +..+...  .......|.|.|++.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~--~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS--KDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC--SSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeeccccc--ccccccceeEcCCCCEEEEecC
Confidence             0    11  22332222111        1111211  2234578999999987777654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.76  E-value=3.8  Score=29.82  Aligned_cols=164  Identities=14%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             CCeEEEEEccCCeeeEeeccccCcEEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEeccCCCCEEEEEEcCCCCEEE
Q 023018           86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL  165 (288)
Q Consensus        86 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  165 (288)
                      ||.++.|.....-...........+..++....  ..+. -.|+.+..|.................|..++-.  ...++
T Consensus        82 dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  156 (273)
T d1jtdb_          82 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL  156 (273)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred             eeeeeccCCCcceeeccccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee
Confidence            688888876432211111112233444443322  2222 247889888644332221111222345554432  22222


Q ss_pred             EecCCCeEEEEECCcccEEEEeeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEEcCCCccccCeEEEEE
Q 023018          166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENIHVIRGHPYHTEGLTCLTI  244 (288)
Q Consensus       166 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~p~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~  244 (288)
                       ...++.++.|-................|..|+...  .+.+.-. ||.|+-|=... ++......    ....|..++-
T Consensus       157 -~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~----~~~~v~~I~~  228 (273)
T d1jtdb_         157 -AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTE----ALSGVSAIAS  228 (273)
T ss_dssp             -EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGG----GGSSCCEEEE
T ss_pred             -eecccceeEeecccCCcccccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCcc----CCCCcEEEEe
Confidence             33468888887644322222222445677776543  2332223 79999995432 22211111    3345666665


Q ss_pred             cCCCCEEEEEeCCCcEEEEEc
Q 023018          245 SADSTLALSGSKDGSVHMVNI  265 (288)
Q Consensus       245 ~~~~~~l~~~~~dg~i~iwd~  265 (288)
                      .... .++.  .||.|+.|=-
T Consensus       229 G~~~-~~~l--~~g~v~~WG~  246 (273)
T d1jtdb_         229 GEWY-SLAL--KNGKVIAWGS  246 (273)
T ss_dssp             CSSC-EEEE--ETTEEEEEST
T ss_pred             Ccce-EEEE--ECCEEEEECC
Confidence            5433 3333  3799999953