Citrus Sinensis ID: 023021

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHccccccccc
cccccHHEEEcccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHcc
MEGKEEDVRlgankfterqpigtaaqsqdgkdyvepppaplfeeeeltsWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTagisgghinpaVTFGLFLARKLSLTRALFYMVMQCLGAICgagvvkgfmgagqygrlggganavahgytkgdglgaEIIGTFVLVYTVFSatdakrsardshvpilaplpIGFAVFLVHLAtipitgtginparslGAAIIynkdhgwddhwifWVGPFIGAALAALYHQVVIRAIPFKSS
megkeedvrlgankfterqpigtaaqsqdgkdyVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVepppaplfeeeelTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMgagqygrlggganaVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
*********************************************ELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPF***
*****ED*******************************APLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRS**DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPF***
********RLGANKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
******************************KDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
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MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.993 0.993 0.888 1e-146
Q39196287 Probable aquaporin PIP1-4 yes no 0.993 0.996 0.888 1e-146
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.993 0.993 0.878 1e-146
P25794289 Probable aquaporin PIP-ty N/A no 1.0 0.996 0.875 1e-145
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.993 0.989 0.871 1e-144
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.993 0.989 0.868 1e-144
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 0.993 0.993 0.871 1e-143
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.986 0.993 0.867 1e-141
Q08451286 Probable aquaporin PIP-ty N/A no 0.986 0.993 0.846 1e-140
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.993 0.979 0.862 1e-139
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/287 (88%), Positives = 266/287 (92%), Gaps = 1/287 (0%)

Query: 1   MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ  D KDY EPPPAPLFE  EL SWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
           +ATFLFLYI+VLTVMGV  S +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDG 180
           FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF   G Y   GGGAN VA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDG 179

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 239

Query: 241 RSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 287
           RSLGAAIIYN+ H WDDHWIFWVGPFIGAALAA+YHQVVIRAIPFKS
Sbjct: 240 RSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
256568419288 PIP protein [Gossypium hirsutum] gi|2565 1.0 1.0 0.916 1e-152
335954641289 plasma membrane intrinsic protein 1 [Jat 1.0 0.996 0.923 1e-151
255571849288 Aquaporin PIP1.3, putative [Ricinus comm 0.996 0.996 0.926 1e-151
300793590288 TPA_inf: aquaporin PIP1;7 [Gossypium hir 1.0 1.0 0.913 1e-150
255571847287 Aquaporin PIP1.3, putative [Ricinus comm 0.996 1.0 0.923 1e-150
219523020287 plasma membrane intrinsic protein 1 [Pop 0.996 1.0 0.905 1e-149
307826678287 aquaporin [Hevea brasiliensis] 0.996 1.0 0.909 1e-148
378408539290 plasma intrinsic protein PIP1.1 [Heliant 1.0 0.993 0.9 1e-148
224109360287 aquaporin, MIP family, PIP subfamily [Po 0.996 1.0 0.898 1e-148
224101113287 aquaporin, MIP family, PIP subfamily [Po 0.996 1.0 0.902 1e-148
>gi|256568419|gb|ACU87553.1| PIP protein [Gossypium hirsutum] gi|256568421|gb|ACU87554.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/288 (91%), Positives = 274/288 (95%)

Query: 1   MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQSQD KDY EPPPAPLFE  ELTSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQSQDDKDYTEPPPAPLFEPSELTSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
           +ATFLFLYISVLTVMGV+K  TKC+TVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  VATFLFLYISVLTVMGVLKDKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDG 180
           FGLFL RKLSLTRA++YMVMQCLGAICGAGVVKGFMG  +YG LGGGAN+V HGYTKGDG
Sbjct: 121 FGLFLGRKLSLTRAIYYMVMQCLGAICGAGVVKGFMGKTRYGALGGGANSVNHGYTKGDG 180

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 181 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240

Query: 241 RSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSS 288
           RSLGAAII+NKD GWDDHWIFWVGPFIGAALAALYH VVIRAIPFKS 
Sbjct: 241 RSLGAAIIFNKDKGWDDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK 288

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|335954641|gb|AEH76327.1| plasma membrane intrinsic protein 1 [Jatropha curcas] Back     alignment and taxonomy information
>gi|255571849|ref|XP_002526867.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|38198152|emb|CAE53882.1| aquaporin [Ricinus communis] gi|223533766|gb|EEF35498.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|300793590|tpg|DAA33861.1| TPA_inf: aquaporin PIP1;7 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255571847|ref|XP_002526866.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223533765|gb|EEF35497.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|219523020|gb|ACL14797.1| plasma membrane intrinsic protein 1 [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|307826678|gb|ADN94473.1| aquaporin [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|378408539|gb|AFB83065.1| plasma intrinsic protein PIP1.1 [Helianthemum almeriense] Back     alignment and taxonomy information
>gi|224109360|ref|XP_002315171.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118486523|gb|ABK95101.1| unknown [Populus trichocarpa] gi|222864211|gb|EEF01342.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101113|ref|XP_002312147.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489357|gb|ABK96483.1| unknown [Populus trichocarpa x Populus deltoides] gi|222851967|gb|EEE89514.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.989 0.993 0.829 2.1e-123
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.989 0.993 0.818 5.1e-122
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.986 0.993 0.822 1.1e-121
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.986 0.993 0.818 4.6e-121
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.885 0.847 0.790 1.1e-103
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.923 0.95 0.670 1.5e-92
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.906 0.938 0.679 6.3e-92
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.829 0.838 0.731 2.1e-91
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.822 0.825 0.733 3.5e-91
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.829 0.838 0.719 2.5e-90
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 238/287 (82%), Positives = 249/287 (86%)

Query:     1 MEGKEEDVRLGANKFTERQPIGTAAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEF 60
             MEGKEEDVR+GANKF ERQPIGT+AQS D KDY              +SWSFYRAGIAEF
Sbjct:     1 MEGKEEDVRVGANKFPERQPIGTSAQSTD-KDYKEPPPAPLFEPGELSSWSFYRAGIAEF 59

Query:    61 IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
             IATFLFLYI+VLTVMGV ++   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT
Sbjct:    60 IATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 119

Query:   121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDG 180
             FGLFLARKLSLTRA+FYM+MQCLGAICGAGVVKGF               VAHGYTKG G
Sbjct:   120 FGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANT-VAHGYTKGSG 178

Query:   181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
             LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct:   179 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 238

Query:   241 RSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 287
             RSLGAAIIYNKDH WDDHWIFWVGPFIGAALAALYHQ+VIRAIPFKS
Sbjct:   239 RSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0006833 "water transport" evidence=RCA;IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.88850.99300.9930yesno
Q8GRI8PIP25_ORYSJNo assigned EC number0.70760.87150.8869nono
Q8LAA6PIP15_ARATHNo assigned EC number0.8750.99300.9965nono
P93004PIP27_ARATHNo assigned EC number0.72110.93050.9571nono
Q9SV31PIP25_ARATHNo assigned EC number0.72720.88540.8916nono
P43287PIP22_ARATHNo assigned EC number0.74520.88880.8982nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.87100.99300.9930nono
Q84RL7PIP21_MAIZENo assigned EC number0.72450.88880.8827N/Ano
P30302PIP23_ARATHNo assigned EC number0.73380.88880.8982nono
Q9AQU5PIP13_MAIZENo assigned EC number0.86250.99300.9794N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.70760.87150.8776nono
Q9AR14PIP15_MAIZENo assigned EC number0.87800.99300.9930N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.72970.88880.9078nono
P61837PIP11_ARATHNo assigned EC number0.88150.98610.9930nono
Q08451PIP1_SOLLCNo assigned EC number0.84660.98610.9930N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.71210.88540.8762nono
P61838PIP11_VICFANo assigned EC number0.88150.98610.9930N/Ano
P42767PIP1_ATRCANo assigned EC number0.750.89930.9184N/Ano
Q06611PIP12_ARATHNo assigned EC number0.86750.98610.9930nono
Q9ATN0PIP16_MAIZENo assigned EC number0.81530.98950.9628N/Ano
Q6K215PIP22_ORYSJNo assigned EC number0.74610.87150.8715nono
Q39196PIP14_ARATHNo assigned EC number0.88880.99300.9965yesno
Q41870PIP11_MAIZENo assigned EC number0.83620.98950.9930N/Ano
P43286PIP21_ARATHNo assigned EC number0.74140.88880.8919nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.73460.87150.8655nono
Q9XF59PIP12_MAIZENo assigned EC number0.87150.99300.9896N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.73780.89580.9052N/Ano
Q08733PIP13_ARATHNo assigned EC number0.88150.98610.9930yesno
Q9ATM8PIP22_MAIZENo assigned EC number0.70780.88880.8767N/Ano
P25794PIP2_PEANo assigned EC number0.87541.00.9965N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70830.88880.8919N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.72690.87150.8715N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.73600.90270.9027N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.73230.90270.8996N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.86800.99300.9896nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.74040.90620.9388nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X1818
SubName- Full=Putative uncharacterized protein; (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
pfam00230218 pfam00230, MIP, Major intrinsic protein 8e-98
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-77
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 3e-70
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-46
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-34
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 6e-32
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 9e-32
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 4e-30
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-21
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 3e-20
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-17
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-17
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-14
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-04
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-04
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 0.001
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  286 bits (733), Expect = 8e-98
 Identities = 123/231 (53%), Positives = 152/231 (65%), Gaps = 13/231 (5%)

Query: 46  ELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVY 105
           EL S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 106 CTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLG 165
           CT  ISG H+NPAVTF L + R++SL RA++Y++ Q LGAICGA ++KG     Q  R G
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQ--RAG 113

Query: 166 GGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
           G AN++A G   G     EII TF LVYTVF+ TD  R+    HV   APL IGFAVFL 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLN 170

Query: 226 HLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYH 276
           HLA  P TG  +NPARS G A++  K   WDDHW++WVGP IGAALAAL +
Sbjct: 171 HLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.81
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.8
PLN00026298 aquaporin NIP; Provisional 99.79
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.77
PLN00183274 putative aquaporin NIP7; Provisional 99.77
PLN00184296 aquaporin NIP1; Provisional 99.74
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.74
PLN00166250 aquaporin TIP2; Provisional 99.7
PLN00027252 aquaporin TIP; Provisional 99.7
PRK05420231 aquaporin Z; Provisional 99.68
PLN00167256 aquaporin TIP5; Provisional 99.66
PTZ00016294 aquaglyceroporin; Provisional 99.65
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.63
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.56
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.25
PRK10805285 formate transporter; Provisional 88.73
COG2116265 FocA Formate/nitrite family of transporters [Inorg 86.41
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8e-49  Score=341.96  Aligned_cols=225  Identities=53%  Similarity=0.825  Sum_probs=199.1

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHH
Q 023021           46 ELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFL  125 (288)
Q Consensus        46 ~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~  125 (288)
                      +.++++.+|++++||++|++++|.+|++.....+   .....+.+.+++++|+.++..+++++++||||+|||+|+++++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            3456789999999999999999999987765443   2334456778999999999999999999999999999999999


Q ss_pred             hcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHHHHHHHHHh-hcccccc
Q 023021          126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRS  204 (288)
Q Consensus       126 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~vl~-~~~~~~~  204 (288)
                      .+++++.++..|+++|++|+++|+.+.+.+.+ +.+.......+.+.++.+..|+++.|++.||.|++++++ .+|+++.
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTP-GQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecC-cccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            99999999999999999999999999999984 333333344566788899999999999999999999999 6676664


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHHHHHHHHHHHHhccCC
Q 023021          205 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIP  284 (288)
Q Consensus       205 ~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Gai~a~~~~~~~~~~~~  284 (288)
                             .+.|+.||+++...+++++++||++|||||+|||+++++   .|+++|+||+||++|+++++++||+++.+++
T Consensus       160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~  229 (238)
T KOG0223|consen  160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDE  229 (238)
T ss_pred             -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCcc
Confidence                   478999999999999999999999999999999999985   5999999999999999999999999998773

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-99
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-98
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-98
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-98
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-98
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-41
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 7e-41
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 5e-37
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 8e-37
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-36
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 8e-35
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 3e-31
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-26
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 7e-26
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-25
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-25
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 4e-16
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-15
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-15
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 3e-15
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 6e-15
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 6e-15
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 9e-15
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 3e-14
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 2e-13
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 9e-13
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 9e-11
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 9e-10
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-08
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-06
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  356 bits (914), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 184/264 (69%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Query: 24  AAQSQDGKDYVXXXXXXXXXXXXXTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
           A   Q GKDYV               WSF+RA IAEFIAT LFLYI+V TV+G  K    
Sbjct: 9   AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84  CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCL 143
           C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RAL YM+ QCL
Sbjct: 69  CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
           GAICG G+VK FM              VA GY KG  LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFMKGPYNQFGGGANS-VALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWV 263
           SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N +  WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFIGAALAALYHQVVIRAIPFKS 287
           GPFIGAA+AA YHQ V+RA   K+
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-135
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-114
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-104
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-103
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-102
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-102
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-102
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-100
2o9g_A234 Aquaporin Z; integral membrane protein, structural 5e-99
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-98
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 5e-79
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-50
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 3e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 9e-50
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  384 bits (989), Expect = e-135
 Identities = 199/278 (71%), Positives = 222/278 (79%), Gaps = 2/278 (0%)

Query: 11  GANKFTERQPIGTAAQS-QDGKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYI 69
              +    + +   AQ+ Q GKDYV+PPPAP F+  EL  WSF+RA IAEFIAT LFLYI
Sbjct: 18  HMLEDLMSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYI 77

Query: 70  SVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKL 129
           +V TV+G  K    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+
Sbjct: 78  TVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137

Query: 130 SLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTF 189
            L RAL YM+ QCLGAICG G+VK FM  G Y + GGGAN+VA GY KG  LGAEIIGTF
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYNKGTALGAEIIGTF 196

Query: 190 VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY 249
           VLVYTVFSATD KRSARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+
Sbjct: 197 VLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIF 256

Query: 250 NKDHGWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 287
           N +  WDD WIFWVGPFIGAA+AA YHQ V+RA   K+
Sbjct: 257 NSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 294
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.82
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.76
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.75
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.74
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.74
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.73
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.73
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.73
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.73
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.72
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.72
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.67
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.64
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=6.8e-55  Score=394.02  Aligned_cols=256  Identities=77%  Similarity=1.320  Sum_probs=207.3

Q ss_pred             cccccCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccC
Q 023021           30 GKDYVEPPPAPLFEEEELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAG  109 (288)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~  109 (288)
                      .|++++|++.+..+.++.++++++|++++||+|||+|+|.+++++++.....++....+++.+++++|+++++.++++++
T Consensus        38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~  117 (304)
T 3cn5_A           38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG  117 (304)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence            48888887777788888899999999999999999999999988776543333334567788999999999999999999


Q ss_pred             ccccccchHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhcCccccccCCCcccccCCCCCcchhhHHHHHHH
Q 023021          110 ISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLGGGANAVAHGYTKGDGLGAEIIGTF  189 (288)
Q Consensus       110 ~sGah~NPavTl~~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~T~  189 (288)
                      +||||+|||||++.++.|+++|.+.+.|+++|++|+++|+.+++.++ ++.++..+.+.+.+.++.+..++|+.|+++|+
T Consensus       118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf  196 (304)
T 3cn5_A          118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTF  196 (304)
T ss_dssp             TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 44455444445555667888999999999999


Q ss_pred             HHHHHHHhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHhCCCCCCCcceeeehhhHHHH
Q 023021          190 VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGA  269 (288)
Q Consensus       190 iLv~~vl~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~~~~~~w~~~wvy~vap~~Ga  269 (288)
                      +|+++++.++|+++....++.+.+.|+.||+++.++.++++++||++|||||||||+++++++..|+++|+||+||++|+
T Consensus       197 iLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa  276 (304)
T 3cn5_A          197 VLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA  276 (304)
T ss_dssp             HHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHH
Confidence            99999998888766543333345899999999999999999999999999999999999654568999999999999999


Q ss_pred             HHHHHHHHHHhccCCCC
Q 023021          270 ALAALYHQVVIRAIPFK  286 (288)
Q Consensus       270 i~a~~~~~~~~~~~~~~  286 (288)
                      ++|+++|++++...+.+
T Consensus       277 ~laa~~y~~l~~~~~~~  293 (304)
T 3cn5_A          277 AVAAAYHQYVLRAAAIK  293 (304)
T ss_dssp             HHHHHHHHTTSCCCC--
T ss_pred             HHHHHHHHHHhCCCCCC
Confidence            99999999999877755
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-54
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 0.002
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-49
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-41
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.002
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-40
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  173 bits (440), Expect = 6e-54
 Identities = 100/240 (41%), Positives = 137/240 (57%), Gaps = 13/240 (5%)

Query: 45  EELTSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMI 100
            E     F+RA +AEF+A  LF++IS+ + +G    +  + T  +      ++ AFG  I
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 101 FALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQ 160
             L      ISG H+NPAVT GL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +  
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 161 YGRLGGGANAVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGF 220
                 G NA+A G   G GLG EIIGT  LV  V + TD +R      +    PL IGF
Sbjct: 123 DN--SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGF 176

Query: 221 AVFLVHLATIPITGTGINPARSLGAAIIYNKDHGWDDHWIFWVGPFIGAALAALYHQVVI 280
           +V L HL  I  TG GINPARS G+++I    H + DHWIFWVGPFIGAALA L +  ++
Sbjct: 177 SVALGHLLAIDYTGCGINPARSFGSSVIT---HNFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.7
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.67
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.67
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.65
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-47  Score=337.97  Aligned_cols=226  Identities=26%  Similarity=0.373  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhcccCCCCCCCcchhHHHHHHHHHHHHHHHhccCccccccchHHHHHHHHhcCCcc
Q 023021           52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSL  131 (288)
Q Consensus        52 ~~r~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~v~~~~~~~~~~sGah~NPavTl~~~~~g~~~~  131 (288)
                      +.|++++||+|||+++|+++++.......+   ...+...+++++|+++...+++++++||||+|||||++.++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~---~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccC---CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            578999999999999999988765544332   23355678999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhHHHHHHHHHHHHHhcCccccc----------------cCCCcccccCCCCCcchhhHHHHHHHHHHHHH
Q 023021          132 TRALFYMVMQCLGAICGAGVVKGFMGAGQYGR----------------LGGGANAVAHGYTKGDGLGAEIIGTFVLVYTV  195 (288)
Q Consensus       132 ~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~s~~~~~~~E~i~T~iLv~~v  195 (288)
                      .+...|+++|++|+++|+++.+.++++...+.                ....++.+.++.+..++|+.|+++|++|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999883321110                01123345667788999999999999999999


Q ss_pred             HhhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchHhhHHHHHHh----------CCCCCCCcceeeehhh
Q 023021          196 FSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY----------NKDHGWDDHWIFWVGP  265 (288)
Q Consensus       196 l~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~sG~~lNPAr~~~~~l~~----------~~~~~w~~~wvy~vap  265 (288)
                      +...+++|+...   +...|+.+|+.+.......++.||++|||||||||+++.          .++.+|+++||||+||
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999988775433   357899999999999999999999999999999999984          1246899999999999


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 023021          266 FIGAALAALYHQVVIRAI  283 (288)
Q Consensus       266 ~~Gai~a~~~~~~~~~~~  283 (288)
                      ++|+++++++||+++..+
T Consensus       236 ~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         236 IVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999999998764
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure