Citrus Sinensis ID: 023031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEEccccccEEEEEEEEccccccccccccccccHHHHHHHHHccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEccccHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEcccccccEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHcccEEEEcccccccEEEEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccEEEEEEEEEEcccccEEHHHHHHHHHHHHHHHHHHcccccEEEccccccHHccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQnvdkatevdyhwvefddVRYHVQVTMKNPHIVLLSvslpvpppetifigglpfGAIEAIKAAYGNvvqildpprdgfnltlklnlsklppneenKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVhrpkesfflipqaekvtvvfpmrfndsIDTVLATSFLQEFVEARRTaglnnaplcmwssspplelkgvpsetlsanagfVTFVIfprhvegkkldrtVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Flexible Loop (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILsslsqtla
Low Complexity Region (SEG)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIvllsvslpvpppETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Disordered region (IsUnstruct)
*******SRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKL*****NKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS***LELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSIL********
Disordered Region (DISOPRED)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVL*****************LVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEA***********CMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Disordered Region (DISEMBL)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Disordered Region (DISPRO)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVGFLINRSILSSLSQTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
O96623	293	Actin-related protein 2/3	yes	no	0.916	0.901	0.313	3e-29
Q8WTM6	301	Probable actin-related pr	yes	no	0.885	0.847	0.290	3e-28
O14241	317	Actin-related protein 2/3	yes	no	0.906	0.823	0.282	1e-27
Q5R5Z5	300	Actin-related protein 2/3	yes	no	0.875	0.84	0.293	6e-25
O15144	300	Actin-related protein 2/3	yes	no	0.875	0.84	0.293	6e-25
Q3MHR7	300	Actin-related protein 2/3	yes	no	0.875	0.84	0.293	7e-25
P85970	300	Actin-related protein 2/3	yes	no	0.875	0.84	0.293	8e-25
Q9CVB6	300	Actin-related protein 2/3	yes	no	0.875	0.84	0.293	1e-24
Q7PVX8	304	Probable actin-related pr	yes	no	0.885	0.838	0.289	6e-24
Q9VIM5	301	Probable actin-related pr	yes	no	0.875	0.837	0.282	7e-24

>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 160/293 (54%), Gaps = 29/293 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           MLLL++H+R L + +++  +   +   +   + +FD V+++VQ T  +   +++SVSL  
Sbjct: 1   MLLLETHNRILYDEVISHFEGDRRVNNI---FADFDGVKFNVQ-TSDDKSSLMVSVSLHA 56

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                     L  G    +K+ YG+++Q    P  G+++TL +  S       NK  L  
Sbjct: 57  AADL------LKNGGSALLKSVYGDMLQA--KPEGGYDVTLVIQSS----FSGNKEELAK 104

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K++ ++  ++ AP  +V + + +K     + +++A+ +R  E+F+L PQ + V V+F + 
Sbjct: 105 KVSLLKRHLVAAPFLMVFEGIEAK---KPLPEIIAINYRTDETFYLKPQGDNVIVIFDIA 161

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPS-ETLSANAGFVT 238
           F D+ D +L+  FLQ FV+ R+T  ++N P   +S   PPLELKGV       AN GFV+
Sbjct: 162 FKDADDVILSKIFLQSFVDVRKT--ISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVS 219

Query: 239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLIN--RSILSSLSQTL 287
           FV+FP H+  KK   +   + TF  Y+ YH+K   G++    R+ + SL Q L
Sbjct: 220 FVLFPAHI--KKPQESADLIQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVL 270

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.
Dictyostelium discoideum (taxid: 44689)

>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 20/275 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATE---VDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M++L+ ++R ++E L  +  N  +  +   V+  + +FD V Y +     +   ++LS+S
Sbjct: 1   MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYKLSNPDGDRTKIILSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA + ++  YG    +   P  GFN+TL+ NL+ LP +  +   
Sbjct: 61  LK------FYTELQQHGADDLLRRVYGG--HMRSTPEQGFNVTLEYNLADLPADTTD--- 109

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
            LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+F
Sbjct: 110 -LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVIF 166

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAGF 236
              F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G+
Sbjct: 167 STVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVGY 224

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           +TFV+FPRH   K  D T+  + +F  Y+ YH+K 
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKC 259

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Caenorhabditis elegans (taxid: 6239)

>sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPE------LVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVG 272
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K  
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKAS 276

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Pongo abelii (taxid: 9601)

>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1

 Score =  114 bits (285), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---YLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Rattus norvegicus (taxid: 10116)

>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 61  LK-------FYKELQAHGADELLKRVYGS---FLVNPEPGYNVSLLYDLENLPAS---KD 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNATARDNTINLIHTFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Mus musculus (taxid: 10090)

>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 133/276 (48%), Gaps = 21/276 (7%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +KA  +D    +FD V +H+     +   V  S+S
Sbjct: 1   MILLEINNRIVEETLTVKFKNAIAGNKAESIDVTVADFDGVLFHISNINGDKTKVRTSIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+   +L  P DG+N+++ ++L  +P   EN  
Sbjct: 61  LK-------FYKQLQEHGADELLKREYGD---LLVAPEDGYNVSVLVDLENIP---ENWE 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
             + KI  ++     +         +      +  +   + +R  E+ ++  + ++VTVV
Sbjct: 108 ETVRKIGLLKRNCFASVFEKYFDFQSQGEGEGEGQKRAVINYRNDETMYVEAKPDRVTVV 167

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D VL   F+QE  E RR +  + AP  ++S   PPLEL    +  +  N G
Sbjct: 168 FSTIFRDEDDVVLGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTGAR-VGENIG 224

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           +VTFV+FPRH   +  D T+  +  F  Y+ YH+K 
Sbjct: 225 YVTFVLFPRHTAKETRDNTINLIHMFRDYLHYHIKC 260

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Anopheles gambiae (taxid: 7165)

>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arc-p34 PE=2 SV=2

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 136/276 (49%), Gaps = 24/276 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E LL + +N     K   +D    +FD V YH+     +   V +S+S
Sbjct: 1   MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60

Query: 58  LPVPPPETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
           L        F   L   GA E +K  YG+   +L    +G+N+++ +NL ++P   E+  
Sbjct: 61  LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIP---EDCE 107

Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
            +  +I  ++     +   V  K+   +    +  +   + +R  E+ ++  + ++VTVV
Sbjct: 108 QIAKRIGLLKRNCFAS---VFEKYFDYQEQGEEGQKRAVINYRNDETLYVEAKPDRVTVV 164

Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D ++   F+QE  E RR +  + AP  ++S   PPLEL    +  +  N G
Sbjct: 165 FSTIFRDEDDVIIGKVFMQELREGRRAS--HTAPQVLFSHREPPLELANTDAR-VGDNIG 221

Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           +VTFV+FPRH   +  D T+  +  F  Y+ YH+K 
Sbjct: 222 YVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHIKC 257

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
356526671	324	PREDICTED: actin-related protein 2/3 com	0.961	0.854	0.799	1e-131
225424319	328	PREDICTED: actin-related protein 2/3 com	0.961	0.844	0.817	1e-129
224075397	324	predicted protein [Populus trichocarpa]	0.961	0.854	0.806	1e-129
388504156	324	unknown [Lotus japonicus]	0.961	0.854	0.781	1e-129
357517353	375	Actin-related protein 2/3 complex subuni	0.961	0.738	0.781	1e-127
224053635	324	predicted protein [Populus trichocarpa]	0.961	0.854	0.792	1e-127
449433447	320	PREDICTED: actin-related protein 2/3 com	0.961	0.865	0.781	1e-127
118488545	318	unknown [Populus trichocarpa]	0.940	0.852	0.792	1e-124
356559035	320	PREDICTED: actin-related protein 2/3 com	0.947	0.853	0.777	1e-124
305690311	328	Arp2/3 complex p35 subunit [Nicotiana ta	0.944	0.829	0.768	1e-123

>gi|356526671|ref|XP_003531940.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Glycine max]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/279 (79%), Positives = 252/279 (90%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVALDMDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP++ LSANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVPADALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct: 241 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTR 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424319|ref|XP_002284770.1| PREDICTED: actin-related protein 2/3 complex subunit 2 isoform 1 [Vitis vinifera] gi|297737660|emb|CBI26861.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/279 (81%), Positives = 248/279 (88%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++K  E+DY WVEFDDVRYHVQV+MK P  +LLSVSLP 
Sbjct: 1   MILLQSPSRFLLQTLLNRVQNLEKGVELDYQWVEFDDVRYHVQVSMKYPQFLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  E +F GGLPFGAIEAIKA+YG +VQILDPP+DGFNLTLKLNLSKLPP+EE KHALLV
Sbjct: 61  PAQEAVFSGGLPFGAIEAIKASYGVLVQILDPPKDGFNLTLKLNLSKLPPDEEYKHALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TVA DI++  ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVAPDINRPFALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDTVLATSFLQEFVEARRTAGLNNAP C+WS SPPLEL+G   E LSANAGFVTFV
Sbjct: 181 FKDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPLELRGTAGEALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEGKKLDRTVW+LSTF AYVSYHVK   GF+  R
Sbjct: 241 IFPRHVEGKKLDRTVWSLSTFRAYVSYHVKCSEGFMHTR 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075397|ref|XP_002304616.1| predicted protein [Populus trichocarpa] gi|222842048|gb|EEE79595.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/279 (80%), Positives = 251/279 (89%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDVRYH+ V+MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDVRYHILVSMKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 181 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTR 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504156|gb|AFK40144.1| unknown [Lotus japonicus]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/279 (78%), Positives = 251/279 (89%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR QN++K  E+D+HWVEFDDVRYH+QV+MKNPHI+LLSVSLP 
Sbjct: 1   MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHILLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKA YG +VQILDPP+DGFNLTLK+NLSK+P N+E +HA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+TVA D+D ++ALVHRPKESFFL+PQA+KVTVV+PMR
Sbjct: 121 KVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRPKESFFLLPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGL+N P C WS +PPLELK +P++ LSANAGFV+FV
Sbjct: 181 FNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVK   GF+  R
Sbjct: 241 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTR 279

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517353|ref|XP_003628965.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355522987|gb|AET03441.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/279 (78%), Positives = 250/279 (89%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNR+QN++K  E+D+HWVEFDDVRYH+QV+MKNP+I LLSVSLP 
Sbjct: 52  MILLQSHSRFLLQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPT 111

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYG++VQILDPPRDGFNLTLK+NLSK+P N+E + ALLV
Sbjct: 112 PSSETIFVCGLPFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLV 171

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+ASVREVVLGAPLRV+LKHLAS+ VA D+D L+ALVHRPKESFF+ PQA+KVTV++PMR
Sbjct: 172 KVASVREVVLGAPLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMR 231

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PP ELKGV ++ LSANAGFV+FV
Sbjct: 232 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFV 291

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEG KLDRTVW+LSTFHAYVSYHVK   GF+  R
Sbjct: 292 IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKCSEGFMHTR 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053635|ref|XP_002297905.1| predicted protein [Populus trichocarpa] gi|222845163|gb|EEE82710.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/279 (79%), Positives = 248/279 (88%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SRFLL+ LLNRVQN++KA E+DY WVEF DVRYH+ V+ KNP+++LLSVSLP 
Sbjct: 1   MILLQSQSRFLLQTLLNRVQNLEKAVELDYLWVEFSDVRYHILVSTKNPNVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLP GAIEAIKAAYG VV ILDPPRDGFNLTLKLNL+KLPP+EE+++ALLV
Sbjct: 61  PPPEAVFIGGLPGGAIEAIKAAYGVVVHILDPPRDGFNLTLKLNLAKLPPDEEHRYALLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHLAS+TV  D+D++LALVHRPKESFFL+ Q +KVTVVFPMR
Sbjct: 121 KIASVREVVLGAPLRVVLKHLASRTVVPDVDRVLALVHRPKESFFLVSQPDKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSIDT  ATSFLQEFVEARR AGLNNAP C+WS +PPLEL   P+E LSANAGFV+FV
Sbjct: 181 FKDSIDTAFATSFLQEFVEARRAAGLNNAPPCLWSPTPPLELNEAPAEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTR 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433447|ref|XP_004134509.1| PREDICTED: actin-related protein 2/3 complex subunit 2-like [Cucumis sativus]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/279 (78%), Positives = 248/279 (88%), Gaps = 2/279 (0%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRV N++KA EVDY+WVEFDDVRYHVQV+MKNPH+ LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVHNLEKAVEVDYNWVEFDDVRYHVQVSMKNPHLFLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  +T+F GGLP GAIEAIKAAYG +VQILDPPRDGFNLTLKLNLSKLP +E+N+H +LV
Sbjct: 61  PSADTVFCGGLPSGAIEAIKAAYGILVQILDPPRDGFNLTLKLNLSKLPLDEDNRHTILV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLR +LK L S+ VASD+++L+ALVHRPKESFFL+PQAEKVTVVFPMR
Sbjct: 121 KVASIREVVLGAPLRGILKQLGSRVVASDVNKLVALVHRPKESFFLVPQAEKVTVVFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID  LATSFLQEFVEARRTAGLNNAP C WS SPP ELKG PS+ LSANAGFVTFV
Sbjct: 181 FKDSIDIALATSFLQEFVEARRTAGLNNAPPCSWSLSPPQELKGAPSDALSANAGFVTFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IF RHVEGK++DR +W+LSTFHAYVSYHVK   GF+  R
Sbjct: 241 IFTRHVEGKRVDRVIWSLSTFHAYVSYHVKCSEGFMHTR 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488545|gb|ABK96085.1| unknown [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/279 (79%), Positives = 246/279 (88%), Gaps = 8/279 (2%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSHSRFLL+ LLNRVQN++KA E+DYHWVEFDDV      +MKNP+++LLSVSLP+
Sbjct: 1   MILLQSHSRFLLQTLLNRVQNLEKAVELDYHWVEFDDV------SMKNPNVLLLSVSLPI 54

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPE +FIGGLPFGAIEA+KAAYG VVQILDPPRDGFNLTLKLNL KLP +EE+++ALLV
Sbjct: 55  PPPEAVFIGGLPFGAIEALKAAYGVVVQILDPPRDGFNLTLKLNLGKLPLDEEHRYALLV 114

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVVLGAPLRVVLKHL+S+TV   ID LLALVHR KESFFL+PQ +KVTVVFPMR
Sbjct: 115 KIASVREVVLGAPLRVVLKHLSSRTVIPGIDGLLALVHRSKESFFLVPQPDKVTVVFPMR 174

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           F DSID   ATSFLQEFVEAR TAGLNNAP C+WS +PPLELK  P+E LSANAGFV+FV
Sbjct: 175 FKDSIDIAFATSFLQEFVEARHTAGLNNAPPCLWSPNPPLELKEAPAEALSANAGFVSFV 234

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct: 235 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTR 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559035|ref|XP_003547807.1| PREDICTED: actin-related protein 2/3 complex subunit 2 [Glycine max]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/279 (77%), Positives = 245/279 (87%), Gaps = 6/279 (2%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQSH RFL + LL   QN++K  E+D+HWVEFDDVRYH+QV+MKNPH++LLSVSLP 
Sbjct: 1   MILLQSHFRFLFQPLLIGPQNLEKGVELDHHWVEFDDVRYHIQVSMKNPHVLLLSVSLPT 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           P  ETIF+ GLPFGAIEAIKAAYGN+VQILDPPRDGFNLTLK+NLSKLP N+E KHA LV
Sbjct: 61  PSSETIFVCGLPFGAIEAIKAAYGNLVQILDPPRDGFNLTLKINLSKLPANQEQKHAFLV 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           K+AS+REVVLGAPLRV+L+HLA++TVA D+D L+ALVHRP ESFFL PQA+KVTVV+PMR
Sbjct: 121 KVASIREVVLGAPLRVILEHLAARTVAPDLDPLVALVHRPNESFFLFPQADKVTVVYPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDSID VLATSFLQEFVEARRTAGLNN P C WS +PPLELK VP    +ANAGFVTFV
Sbjct: 181 FNDSIDIVLATSFLQEFVEARRTAGLNNTPPCSWSLTPPLELKEVP----AANAGFVTFV 236

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
           IFPRHVEG+KLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct: 237 IFPRHVEGQKLDRTVWNLSTFHAYVSYHVKCSEGFMHTR 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305690311|gb|ADM64536.1| Arp2/3 complex p35 subunit [Nicotiana tabacum]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/272 (76%), Positives = 241/272 (88%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           M+LLQS SR+LL+ L NRVQN++K  E+D  WVEFDD+RYH+Q ++KNP+++LLSVSLP+
Sbjct: 1   MILLQSPSRYLLQILSNRVQNLEKGVELDCQWVEFDDIRYHIQASVKNPNVLLLSVSLPI 60

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
           PPPET+  GGLP GA+EAIKAAYG V QILDPPRDGFNLTLKLNLSKLPP+EE+KHALL 
Sbjct: 61  PPPETVLFGGLPLGALEAIKAAYGVVAQILDPPRDGFNLTLKLNLSKLPPDEEHKHALLT 120

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
           KIASVREVV+GAPLR VLKHL S+TV SD+ + +ALVHRP ESFFL+PQ +KVTV+FPMR
Sbjct: 121 KIASVREVVMGAPLRAVLKHLVSRTVPSDLGKPVALVHRPNESFFLVPQVDKVTVIFPMR 180

Query: 181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
           FNDS+DTVLATSFLQEFVEARRTAGLNNAP C+WS S P ELK   +E LSANAGFV+FV
Sbjct: 181 FNDSVDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSAPQELKEAFTEALSANAGFVSFV 240

Query: 241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVG 272
           IFPRHVEG+KLDRTVWNLSTFHAYV+YHVK  
Sbjct: 241 IFPRHVEGRKLDRTVWNLSTFHAYVNYHVKCS 272

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:505006160	318	DIS2 "AT1G30825" [Arabidopsis	0.947	0.858	0.688	1.8e-101
UNIPROTKB|G4MTR0	319	MGG_04745 "ARP2/3 complex 34 k	0.895	0.808	0.278	2.2e-27
DICTYBASE|DDB_G0282813	293	arcB "actin related protein 2/	0.819	0.805	0.309	4e-26
WB|WBGene00021170	301	arx-4 [Caenorhabditis elegans	0.878	0.840	0.294	8.4e-26
POMBASE|SPAC6F6.10c	317	arc2 "ARP2/3 actin-organizing	0.899	0.817	0.284	1.4e-25
ZFIN|ZDB-GENE-030131-5276	299	arpc2 "actin related protein 2	0.885	0.852	0.298	1.6e-24
ASPGD|ASPL0000057561	320	AN0306 [Emericella nidulans (t	0.899	0.809	0.256	4.2e-24
UNIPROTKB|F1P1K3	308	ARPC2 "Uncharacterized protein	0.881	0.824	0.283	1.1e-21
UNIPROTKB|O15144	300	ARPC2 "Actin-related protein 2	0.881	0.846	0.279	2.4e-21
UNIPROTKB|Q3MHR7	300	ARPC2 "Actin-related protein 2	0.881	0.846	0.279	3e-21

TAIR|locus:505006160 DIS2 "AT1G30825" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 192/279 (68%), Positives = 225/279 (80%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LLQSHSRFLL+ LL R QN+DKA E+DY W+EFDDVRYHVQVTMKNP++         
Sbjct:     1 MILLQSHSRFLLQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPN 60

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +   GLP GAIEAIK  YG   QILDPPRDGF+LTLKLN SK+ P+EE    LL 
Sbjct:    61 PPPEAMSFDGLPLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKVRPDEE----LLT 116

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
             K+AS+REVV+GAPL+++ KHLAS+TVA ++D+L+A++HRP E+FFL+PQA+KVTV FPMR
Sbjct:   117 KLASIREVVMGAPLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMR 176

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFV 240
             F DS+DT+LATSFL+EFVEARR A LN AP C WS + P EL+G P ETLSANAGFVTFV
Sbjct:   177 FKDSVDTILATSFLKEFVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFV 236

Query:   241 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR 277
             IFPRHVEGKKLDRTVWNLSTFHAYVSYHVK   GF+  R
Sbjct:   237 IFPRHVEGKKLDRTVWNLSTFHAYVSYHVKFSEGFMHTR 275

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0010090 "trichome morphogenesis" evidence=NAS

UNIPROTKB|G4MTR0 MGG_04745 "ARP2/3 complex 34 kDa subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 79/284 (27%), Positives = 140/284 (49%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L++++L    +      +D    +FD V +H+        I          
Sbjct:     1 MLLLDYQNVLIQSVLTERFSGAPPVSIDQTVSDFDGVIFHISTPESKTKILVSLQIRCYK 60

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                      + +GA + +   YG   Q + PP  G++ ++ ++L  LP   E +  L+ K
Sbjct:    61 DL-------VKYGAEDVLNREYG---QYVVPPEPGYDFSVMVDLENLPSEPEAREELVKK 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVASDIDQ-------LLALVHRPKESFFLIP 168
             I+ ++   + AP          LK  ASK  + +  Q       ++A+ +R +E+ ++  
Sbjct:   111 ISLLKRNAMAAPFEHAYAEHYKLKEEASKYTSEEAPQGIREGGEVMAIHYREEEAIYVKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPS- 227
               ++VTV+F   F +  D V    F+QEFV+ARR A + NAP  ++ + PPLEL+GVP  
Sbjct:   171 SFDRVTVIFSTIFREETDRVYGKVFIQEFVDARRRA-IQNAPQVLFRNDPPLELQGVPGV 229

Query:   228 -ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
              +T +   G+VTFV+FPRH+  +++   + ++ TF  Y  YH+K
Sbjct:   230 KDTGTGEIGYVTFVLFPRHLTPQRMPDVISHIQTFRDYFHYHIK 273

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0282813 arcB "actin related protein 2/3 complex, subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 81/262 (30%), Positives = 140/262 (53%)

Query:    32 WVEFDDVRYHVQVTMKNPHIXXXXXXXXXXXXETIFIGGLPFGAIEAIKAAYGNVVQILD 91
             + +FD V+++VQ +     +            + +  GG    A+  +K+ YG+++Q   
Sbjct:    29 FADFDGVKFNVQTSDDKSSLMVSVSLHAAA--DLLKNGG---SAL--LKSVYGDMLQA-- 79

Query:    92 PPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDID 151
              P  G+++TL +  S       NK  L  K++ ++  ++ AP  +V + + +K     + 
Sbjct:    80 KPEGGYDVTLVIQSSF----SGNKEELAKKVSLLKRHLVAAPFLMVFEGIEAK---KPLP 132

Query:   152 QLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPL 211
             +++A+ +R  E+F+L PQ + V V+F + F D+ D +L+  FLQ FV+ R+T  ++N P 
Sbjct:   133 EIIAINYRTDETFYLKPQGDNVIVIFDIAFKDADDVILSKIFLQSFVDVRKT--ISNVPS 190

Query:   212 CMWSSS-PPLELKGVPSETLS-ANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHV 269
               +S   PPLELKGV       AN GFV+FV+FP H+  KK   +   + TF  Y+ YH+
Sbjct:   191 ITFSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHI 248

Query:   270 KV--GFLIN--RSILSSLSQTL 287
             K   G++    R+ + SL Q L
Sbjct:   249 KCAKGYMHTSMRNRVESLIQVL 270

GO:0030670 "phagocytic vesicle membrane" evidence=IDA

GO:0006909 "phagocytosis" evidence=IEP

GO:0006887 "exocytosis" evidence=IEP

GO:0031982 "vesicle" evidence=IDA

GO:0030041 "actin filament polymerization" evidence=IMP;TAS

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IC

GO:0030175 "filopodium" evidence=IC

GO:0051015 "actin filament binding" evidence=TAS

GO:0045335 "phagocytic vesicle" evidence=TAS

GO:0045010 "actin nucleation" evidence=TAS

GO:0030042 "actin filament depolymerization" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IEA;IC

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00021170 arx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 81/275 (29%), Positives = 135/275 (49%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVD---KATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
             M++L+ ++R ++E L  +  N     K   V+  + +FD V Y     + NP        
Sbjct:     1 MIILEQNNRIIVELLEQKFANAKEGGKPESVNVTFADFDGVLYK----LSNPD---GDRT 53

Query:    58 XXXXXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                      F   L   GA + ++  YG  ++    P  GFN+TL+ NL+ LP +  +  
Sbjct:    54 KIILSISLKFYTELQQHGADDLLRRVYGGHMR--STPEQGFNVTLEYNLADLPADTTD-- 109

Query:   117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
               LV+ AS  +    A   V  K+   +    +  +   + +R  E+ ++  +A++VTV+
Sbjct:   110 --LVQAASALKRNCFAS--VFEKYFEFQEAGQEGHKRAVINYRDDETMYIEAKADRVTVI 165

Query:   177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
             F   F D+ D ++   FLQEF E R+ +    AP  ++S   PPLELK +P   +  N G
Sbjct:   166 FSTVFKDADDVIIGKVFLQEFREGRKAS--QTAPAVLYSLGEPPLELKDLPEARVGDNVG 223

Query:   236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
             ++TFV+FPRH   K  D T+  + +F  Y+ YH+K
Sbjct:   224 YITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIK 258

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0010631 "epithelial cell migration" evidence=IMP

POMBASE|SPAC6F6.10c arc2 "ARP2/3 actin-organizing complex subunit Arc34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 81/285 (28%), Positives = 138/285 (48%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct:     1 MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSMKCY 59

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                E +      +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct:    60 P--ELV-----NYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query:   121 KIASVREVVLGAPL-RVVLKH-----LASKTV--ASDID------QLLALVHRPKESFFL 166
              I+ ++  VL AP  R   K      LA K    A  +D      +L+A+ +R +E+  L
Sbjct:   110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query:   167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
              P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct:   170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query:   226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
                    + GFVTFV+F RH   +  +  + ++  F   + +H+K
Sbjct:   230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIK 274

GO:0000147 "actin cortical patch assembly" evidence=IC

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0006897 "endocytosis" evidence=IC

GO:0030479 "actin cortical patch" evidence=IDA

GO:0032153 "cell division site" evidence=IDA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

ZFIN|ZDB-GENE-030131-5276 arpc2 "actin related protein 2/3 complex, subunit 2" [Danio rerio (taxid:7955)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 81/271 (29%), Positives = 129/271 (47%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  +  +     + +   V F D    V   + NP+          
Sbjct:     1 MILLEINNRIIEETLSLKFDSASNGNKPEAVEVTFADFD-GVLYHISNPN--GDKTKVMV 57

Query:    61 XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                   F      GA E +K  YGN    L  P DG+N++L  +L  LPPN+E     ++
Sbjct:    58 SISLKFFKELQEHGADELLKRVYGN---FLVAPEDGYNISLLFDLDALPPNKEE----MI 110

Query:   121 KIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMR 180
               A + +    A   V  K+   +    D ++   + +R  ES ++  + ++VTVVF   
Sbjct:   111 HQAGILKRNCFAS--VFEKYFKFQEEGRDGEKRAVVHYRDDESMYIEAKKDRVTVVFSTV 168

Query:   181 FNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVTF 239
             F D  D ++   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++TF
Sbjct:   169 FKDDDDVIIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITF 225

Query:   240 VIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
             V+FPRH      D T+  + TF  Y+ YH+K
Sbjct:   226 VLFPRHTNANTRDNTINLIHTFRDYLHYHIK 256

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000057561 AN0306 [Emericella nidulans (taxid:162425)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 73/285 (25%), Positives = 137/285 (48%)

Query:     2 LLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXXX 61
             +LL  +   L+ +LL    +      +D    +FD V +H    +  P +          
Sbjct:     1 MLLLDYENVLIRSLLTERFSGAPPVSIDQIVSDFDGVTFH----LSTPEVKTKILISLNV 56

Query:    62 XXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVK 121
                  F   + +GA + ++  YG  +   +P   G++ ++ ++L  LP ++  +  L+ +
Sbjct:    57 K---CFRELVQYGAQQVLEREYGPYIVAPEP---GYDFSVLIDLENLPDDQTAREDLITR 110

Query:   122 IASVREVVLGAPLRVV------LKHLASKTVA-------SDIDQLLALVHRPKESFFLIP 168
             +A ++   + AP          L   ASK  +       ++  +++A+ +R +E+ ++  
Sbjct:   111 LALLKRNAMAAPFEKAFDEFAQLAEEASKYTSEAAPAGVAEGGEVMAIHYREEEAIYIKA 170

Query:   169 QAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARR-TAGLNNAPLCMWSSSPPLELKGVPS 227
               ++VTV+F   F +  D +    FLQEFV+ARR  A L NAP  ++ + PPLEL GVP 
Sbjct:   171 SHDRVTVIFSTVFREETDRIFGKVFLQEFVDARRRVATLQNAPQVLFRNDPPLELAGVPG 230

Query:   228 --ETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
               +       ++TFV+FPRH+  ++    + ++ TF  Y  YH+K
Sbjct:   231 LQDAGDGKISYITFVLFPRHLTPQRRQENISHIQTFRDYFHYHIK 275

GO:0005634 "nucleus" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030479 "actin cortical patch" evidence=IEA

GO:0051286 "cell tip" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|F1P1K3 ARPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 77/272 (28%), Positives = 128/272 (47%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +      + +   V F D    V   + NP+          
Sbjct:     9 MILLEVNNRIIEETLTLKFEGAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 64

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YGN    L  P  G+N++L  +L  LP +   K A++
Sbjct:    65 VSISLKFYKELQEHGADEVLKKVYGNY---LVNPESGYNVSLLYDLENLPAD---KDAIV 118

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + ++   + +R  E+ ++  + ++VTVVF  
Sbjct:   119 HQAGMLKRNCFAS---VFEKYFKFQEEGKEGEKRAVIHYRDDETMYVEAKKDRVTVVFST 175

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   176 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AIGDNIGYIT 232

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
             FV+FPRH      D T+  + TF  Y+ YH+K
Sbjct:   233 FVLFPRHTNAAARDNTINLIHTFRDYLHYHIK 264

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

UNIPROTKB|O15144 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 76/272 (27%), Positives = 128/272 (47%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +N     + +   V F D    V   + NP+          
Sbjct:     1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 56

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K +++
Sbjct:    57 VSISLKFYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPAS---KDSIV 110

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVVF  
Sbjct:   111 HQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFST 167

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   168 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYIT 224

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
             FV+FPRH      D T+  + TF  Y+ YH+K
Sbjct:   225 FVLFPRHTNASARDNTINLIHTFRDYLHYHIK 256

GO:0003779 "actin binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035650 "AP-1 adaptor complex binding" evidence=IEA

GO:0071933 "Arp2/3 complex binding" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3MHR7 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 76/272 (27%), Positives = 128/272 (47%)

Query:     1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
             M+LL+ ++R + E L  + +N     + +   V F D    V   + NP+          
Sbjct:     1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFD-GVLYHISNPN---GDKTKVM 56

Query:    61 XXXETIFIGGLP-FGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                   F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K +++
Sbjct:    57 VSISLKFYKELQAHGADELLKRVYGSY---LVNPESGYNVSLLYDLENLPAS---KDSIV 110

Query:   120 VKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPM 179
              +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVVF  
Sbjct:   111 HQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFST 167

Query:   180 RFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGFVT 238
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G++T
Sbjct:   168 VFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIGYIT 224

Query:   239 FVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
             FV+FPRH      D T+  + TF  Y+ YH+K
Sbjct:   225 FVLFPRHTNASARDNTINLIHTFRDYLHYHIK 256

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O96623	ARPC2_DICDI	No assigned EC number	0.3139	0.9166	0.9010	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030553001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (328 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038837001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (197 aa)				•	•	•	•		0.909
	GSVIVG00006409001	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (183 aa)				•	•	•	•		0.904
	GSVIVG00018819001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (378 aa)				•	•	•	•		0.840
	GSVIVG00005423001	SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (256 aa)				•	•				0.606
	GSVIVG00022716001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (296 aa)				•	•				0.488

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam04045	240	pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit	2e-72

>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc

 Score =  222 bits (568), Expect = 2e-72
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 14/221 (6%)

Query: 53  LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNE 112
           L+SVSL   P        + +GA E +K  YG  +     P  G++++L ++L +LP +E
Sbjct: 1   LVSVSLKCWPDL------VKYGAEELLKREYGTYLG--VKPEPGYDVSLLIDLEELPADE 52

Query: 113 ENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEK 172
             +  L+ KIA ++   + AP     +  A     ++ +++  + +R  E+ ++ P  ++
Sbjct: 53  --REELIEKIALLKRNCMAAPFEKAFEKQAELAEEAEGEEVAVIHYRDDETIYIKPSFDR 110

Query: 173 VTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETL- 230
           VTV+F   F D  D ++   FLQEFV+ARR +    AP  ++S   PPLEL+GVP     
Sbjct: 111 VTVIFSTVFKDETDKIIGKVFLQEFVDARRRS-RQTAPQVLFSHKEPPLELQGVPGAAKA 169

Query: 231 SANAGFVTFVIFPRH-VEGKKLDRTVWNLSTFHAYVSYHVK 270
             N G+VTFV+FPRH V  K+ D T+  + TF  Y+ YH+K
Sbjct: 170 GDNVGYVTFVLFPRHLVTPKRRDNTISLIQTFRNYLHYHIK 210

Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This family represents the p34-Arc subunit. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG2826	301	consensus Actin-related protein Arp2/3 complex, su	100.0
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	100.0
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	92.45
PTZ00278	174	ARP2/3 complex subunit; Provisional	82.72

>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]

Probab=100.00  E-value=1e-110  Score=755.73  Aligned_cols=271  Identities=30%  Similarity=0.558  Sum_probs=257.4

Q ss_pred             CcccCcccHHHHHHHHHhhhc---cCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHH
Q 023031            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (288)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e   77 (288)
                      ||+||++|++|+++|.+++++   ++||.++|++++|||||+|||||+++||++++||||+||      |.++..||+++
T Consensus         1 Mi~Le~nN~iI~etL~~kf~~~~~g~~P~sid~~vaDFDgv~yhiSnp~gdktkillSislK~------y~elq~~Ga~~   74 (301)
T KOG2826|consen    1 MILLEPNNRIIEETLNEKFENARAGGKPESIDVTVADFDGVLYHISNPNGDKTKILLSISLKF------YKELQLHGADD   74 (301)
T ss_pred             CceeccccHHHHHHHHHHHHHHhccCCCcceeEEEeccCceEEEccCCCCCceEEEEEEehhh------HHHHHHcCHHH
Confidence            999999999999999999998   368999999999999999999999999999999999998      44566799999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhchhHHHHHHHHhcccccccccceeEEe
Q 023031           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (288)
Q Consensus        78 ~Lk~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aapF~~~f~~l~~~~~~~~~~~~~~i~  157 (288)
                      +||++||.++   ..||+|||+||.+||++||++.+   ++++.+++|||||++++|+++|+.++++.   ++.+.++|+
T Consensus        75 LLk~~yg~~~---~epE~Gyn~slli~L~~lpa~~~---~l~~~i~~lkrn~~as~F~k~f~~Q~~~~---e~~~r~~I~  145 (301)
T KOG2826|consen   75 LLKRVYGSYL---SEPEPGYNVSLLIDLAELPADKE---SLAKTISLLKRNCFASVFEKYFQFQEAGV---EGEKRAVIH  145 (301)
T ss_pred             HHHHHhcccc---CCCCCCccEEEEEEHHhCchhHH---HHHHHHHHhhhhHHHHHHHHHHhcchhhh---hhhheeEEE
Confidence            9999999997   67999999999999999999844   68899999999999999999999888774   355789999


Q ss_pred             ccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCC-CCCcccCCCCCCCCCCCeeE
Q 023031          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (288)
Q Consensus       158 yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~-~PPlEL~~~~~~~~~~n~gy  236 (288)
                      |||||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +|+|||||||+ ||||||++++++++|+|+||
T Consensus       146 YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra--~qtAPqVLfShrePPLElkd~~~~~vgdn~gy  223 (301)
T KOG2826|consen  146 YRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRA--SQTAPQVLFSHREPPLELKDLYDARVGDNIGY  223 (301)
T ss_pred             eccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhh--hccccHHHhhcCCCCchhhhcCCcccccccce
Confidence            9999999999999999999999999999999999999999999997  89999999997 99999999999999999999


Q ss_pred             EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhhhcC
Q 023031          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQTLA  288 (288)
Q Consensus       237 VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lkvL~  288 (288)
                      |||||||||++++.+++||++||+|||||||||||  ||||||  +||++|||||+
T Consensus       224 iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLN  279 (301)
T KOG2826|consen  224 ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLN  279 (301)
T ss_pred             EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHh
Confidence            99999999999999999999999999999999999  999999  77999999996

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=100.00  E-value=2.3e-95  Score=664.97  Aligned_cols=227  Identities=38%  Similarity=0.712  Sum_probs=195.5

Q ss_pred             EEEEEeCCCCCCccccCCCCccHHHHHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhch
Q 023031           53 LLSVSLPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGA  132 (288)
Q Consensus        53 ~vSis~~~~~~e~~~~~~l~~G~~e~Lk~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aa  132 (288)
                      +|||++||      |.++.+||+.|+|+++||++++  ++||+|||+||.+||++||++++++.++|+++|+||||+|||
T Consensus         1 lvSi~~~~------~~~l~~~G~~e~l~~~Yg~~~~--~~pe~Gy~~tL~idl~~lp~~~~~~~~~i~~is~LKr~~~aa   72 (241)
T PF04045_consen    1 LVSISLKC------WKELQQYGAEEYLKREYGSYVQ--TPPESGYDVTLVIDLEKLPADEEDREELIKKISLLKRNCLAA   72 (241)
T ss_dssp             EEEEE-TT------HHHHHTTTHHHHHHHHCCCCE---ES--TTSSEEEEEETTS-----SSHHHHHHHHHTHHHHHCCH
T ss_pred             CeEEEech------HHHHHHcCHHHHHHHhcccccc--CCCCCCccEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            69999998      7889999999999999999986  689999999999999999998888999999999999999999


Q ss_pred             hHHHHHHHHhcccccccccceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCc
Q 023031          133 PLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLC  212 (288)
Q Consensus       133 pF~~~f~~l~~~~~~~~~~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqv  212 (288)
                      ||+++|+.++++...+.++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+++ ++||||
T Consensus        73 pF~~~f~~~~~~~~~~~~~~~~~i~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~-~~APqv  151 (241)
T PF04045_consen   73 PFEKAFDEQASLSEEPPGEKPAVIHYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSR-QTAPQV  151 (241)
T ss_dssp             HHHHHHCHHHCT-----TTT-EEEEECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT---TTS-EE
T ss_pred             HHHHHHHHHHhCCccccCCceEEEEeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccC-CCCCce
Confidence            9999999999887655567899999999999999999999999999999999999999999999999999965 999999


Q ss_pred             ccCC-CCCcccCCCCCCC-CCCCeeEEEEEecCCCC-CCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhh
Q 023031          213 MWSS-SPPLELKGVPSET-LSANAGFVTFVIFPRHV-EGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQ  285 (288)
Q Consensus       213 l~s~-~PPlEL~~~~~~~-~~~n~gyVTFvLFprH~-~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lk  285 (288)
                      +||+ +||+||+|+++++ .++|+|||||||||||+ +++++++|||+|++|||||||||||  ||||||  +||++|||
T Consensus       152 lfS~~~PPlEl~~~~~~~~~~~n~gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lk  231 (241)
T PF04045_consen  152 LFSHREPPLELRGVPGARNLGDNVGYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLK  231 (241)
T ss_dssp             EEECSS--CGGTT-TT----STTEEEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHcCCCCccccCCCeEEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9998 9999999999988 89999999999999995 5899999999999999999999999  999999  88999999


Q ss_pred             hcC
Q 023031          286 TLA  288 (288)
Q Consensus       286 vL~  288 (288)
                      ||+
T Consensus       232 vLn  234 (241)
T PF04045_consen  232 VLN  234 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            995

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=92.45  E-value=0.42  Score=42.34  Aligned_cols=106  Identities=21%  Similarity=0.314  Sum_probs=69.4

Q ss_pred             cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (288)
Q Consensus       151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~  230 (288)
                      -.|+.|...+.|..+|.|+-+.|.|.+.....|+-++++.+-|+. |.-.|-.     +=++|         |-.|-   
T Consensus        50 l~pl~I~Rne~E~clIE~SiNSvRvSi~ikq~Deie~iL~~kf~r-Fl~~RAe-----~F~IL---------RRkPv---  111 (170)
T PF05856_consen   50 LNPLVISRNEKEKCLIEPSINSVRVSIKIKQADEIERILCHKFTR-FLMQRAE-----NFFIL---------RRKPV---  111 (170)
T ss_dssp             ---EEEESSSS-EEEEEEBSSEEEEEEE----SCHHHHHHHHHHH-HHHHCTT-----TSTTB----------SS-----
T ss_pred             cCceeeccCCCceEEEEcccceEEEEEEecccChHHHHHHHHHHH-HHHhhhh-----hheee---------eecCc---
Confidence            357777778899999999999999999999999999999999987 4444432     11112         11111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh
Q 023031          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR  277 (288)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR  277 (288)
                         -|| |||.+--.|++.--+.+-|+.|.+|=.=+-=-|.-  -.+-+|
T Consensus       112 ---~GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naR  158 (170)
T PF05856_consen  112 ---EGYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNAR  158 (170)
T ss_dssp             ---TTSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ---CCCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence               144 89999999998766678999999886544433433  444555

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=82.72  E-value=1.9  Score=38.29  Aligned_cols=116  Identities=18%  Similarity=0.315  Sum_probs=82.9

Q ss_pred             cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (288)
Q Consensus       151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~  230 (288)
                      -.++.|...++|...|.|+-+.|.|.|...-.|+-++++++-|+. |.-.|-.     +=++|         |-.|-   
T Consensus        52 l~pl~I~Rne~E~clIE~SiNSvRiSi~ikqaDeie~iL~~kf~~-Fl~~RAe-----~F~IL---------RrkPv---  113 (174)
T PTZ00278         52 LNPIYIVRSEKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVS-FLAQRAE-----QFVIL---------RRKPI---  113 (174)
T ss_pred             cCcEEEEEcCCceEEEEcccceEEEEEEehhhChHHHHHHHHHHH-HHHhhhh-----ceeEE---------eecCc---
Confidence            356777778899999999999999999999999999999999987 4444422     11112         11111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchhhc-HH-HHhhhc
Q 023031          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINRSI-LS-SLSQTL  287 (288)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR~R-v~-~~lkvL  287 (288)
                         .|| |||.+---|++.-.+.+-|+.|.+|=.=.-=-|.-  -.+-+|.| |+ +|++-+
T Consensus       114 ---~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaRaR~~A~~fl~~f  172 (174)
T PTZ00278        114 ---PGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKAL  172 (174)
T ss_pred             ---CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence               244 89999999998766778999999887655555544  56666644 22 566544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
3dwl_D	317	Crystal Structure Of Fission Yeast Arp2/3 Complex L		1e-26
1k8k_D	300	Crystal Structure Of Arp23 COMPLEX Length = 300		2e-23

>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 317

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 26/287 (9%)
Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXXXXX 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+    +   I         
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHISTPEEKTKILISLSM--- 56
Query: 61  XXXETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
                 +   + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 57  ----KCYPELVNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109
Query: 121 KIASVREVVLGAPL------RVVLKHLASKT--------VASDIDQLLALVHRPKESFFL 166
            I+ ++  VL AP       +  L  LA K           +   +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169
Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229
Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKVG 272
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K  
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKAS 276

>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX Length = 300

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 24/276 (8%)
Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIXXXXXX 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     NP+       
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHIS----NPNGDKTKVM 56
Query: 58  XXXXXXETIFIGGL-PFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKH 116
                    F   L   GA E +K  YG+    L  P  G+N++L  +L  LP +   K 
Sbjct: 57  VSISLK---FYKELQAHGADELLKRVYGS---YLVNPESGYNVSLLYDLENLPAS---KD 107
Query: 117 ALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVV 176
           +++ +   ++     +   V  K+   +    + +    + +R  E+ ++  + ++VTVV
Sbjct: 108 SIVHQAGMLKRNCFAS---VFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVV 164
Query: 177 FPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGVPSETLSANAG 235
           F   F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK   +  +  N G
Sbjct: 165 FSTVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTDA-AVGDNIG 221
Query: 236 FVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV 271
           ++TFV+FPRH      D T+  + TF  Y+ YH+K 
Sbjct: 222 YITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKC 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	6e-88
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	3e-84
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 317

 Score =  264 bits (675), Expect = 6e-88
 Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 26/285 (9%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPV 60
           ML L  ++ F+ E L  R  + +  + +D    +FD V +H+  T +    +L+S+S+  
Sbjct: 1   MLSLDYNNIFIYELLTERFSS-ENPSSIDQVVTDFDGVTFHIS-TPEEKTKILISLSMKC 58

Query: 61  PPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLV 120
            P        + +G ++ +K  YG  V     P  G+N ++ ++L +LP  +E K  L +
Sbjct: 59  YPEL------VNYGTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109

Query: 121 KIASVREVVLGAPLRVVLKHLASKTVASDID--------------QLLALVHRPKESFFL 166
            I+ ++  VL AP        A     +  D              +L+A+ +R +E+  L
Sbjct: 110 SISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVL 169

Query: 167 IPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGV 225
            P+ ++VTVVF  +F +  D +    FLQEFV+ARR   +  AP  ++S   PPLE++ +
Sbjct: 170 WPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI 229

Query: 226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
                  + GFVTFV+F RH   +  +  + ++  F   + +H+K
Sbjct: 230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIK 274

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300

 Score =  254 bits (649), Expect = 3e-84
 Identities = 77/274 (28%), Positives = 135/274 (49%), Gaps = 22/274 (8%)

Query: 1   MLLLQSHSRFLLEALLNRVQNV---DKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LK------FYKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVF 177
           ++ +   ++     +      K+   +    + +    + +R  E+ ++  + ++VTVVF
Sbjct: 109 IVHQAGMLKRNCFASVFE---KYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVF 165

Query: 178 PMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSS-PPLELKGVPSETLSANAGF 236
              F D  D V+   F+QEF E RR +  + AP  ++S   PPLELK      +  N G+
Sbjct: 166 STVFKDDDDVVIGKVFMQEFKEGRRAS--HTAPQVLFSHREPPLELKDTD-AAVGDNIGY 222

Query: 237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
           +TFV+FPRH      D T+  + TF  Y+ YH+K
Sbjct: 223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIK 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 42/286 (14%), Positives = 88/286 (30%), Gaps = 56/286 (19%)

Query: 1   MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIV-LLSVSLP 59
           +L  + +   LL  +L  VQN          W  F+ +   + +T +   +   LS +  
Sbjct: 237 LLKSKPYENCLL--VLLNVQNAK-------AWNAFN-LSCKILLTTRFKQVTDFLSAATT 286

Query: 60  VPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALL 119
                      L    ++++   Y                 L      LP      +   
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----------------LDCRPQDLPREVLTTNPRR 329

Query: 120 VKIASVREVVLGAPLRVVL------KHLA----SKTVASDIDQLLALVHRPK-ESFFLIP 168
           + I       +   +R  L      KH+     +  + S ++ L    +R   +   + P
Sbjct: 330 LSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 169 QAEKVTV-VFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPP---LELKG 224
            +  +   +  + + D I + +        V       L        + S P   LELK 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 225 VPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVK 270
                 + +   V     P+  +   L     +   F++++ +H+K
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLK 482

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 57/385 (14%), Positives = 112/385 (29%), Gaps = 139/385 (36%)

Query: 6   SHSRFLLEALLNRVQN-----VDKATEVDYHWV----------------EFDDVR----- 39
           S +  L   LL++ +      V++   ++Y ++                 + + R     
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 40  -------YHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLP-FG----AIEAIKAA----- 82
                  Y+V  +   P++ L    L + P + + I G+   G    A++   +      
Sbjct: 122 DNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 83  ---------YGN------VVQIL-------DP-----PRDGFNLTLKLN-----LSKLPP 110
                      N      V+++L       DP          N+ L+++     L +L  
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 111 NEENKHALLV-----------------KI------ASVREVVLGA-PLRVVLKHLASKTV 146
           ++  ++ LLV                 KI        V + +  A    + L H +    
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 147 ASDIDQLLALV--HRPKESFFLIPQAEKVT----VVFPMRFNDSIDTVLATSFLQEFVEA 200
             ++  LL      RP++   L  +          +      D + T    ++     + 
Sbjct: 300 PDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCDK 354

Query: 201 RRTA---GLNNAPLCMWSSSPPLELKGVPSETLSANAGFVTFVIFPRHV--EGKKLDRTV 255
             T     LN   L       P E + +          F    +FP         L   +
Sbjct: 355 LTTIIESSLNV--L------EPAEYRKM----------FDRLSVFPPSAHIPTILLSL-I 395

Query: 256 WNLSTFHAYVSYHVKVGFLINRSIL 280
           W            V V  L   S++
Sbjct: 396 WFDVIK--SDVMVV-VNKLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	100.0
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	100.0
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	91.7
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	90.83

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-114  Score=812.14  Aligned_cols=277  Identities=29%  Similarity=0.577  Sum_probs=240.0

Q ss_pred             CcccCcccHHHHHHHHHhhhccCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHHHHH
Q 023031            1 MLLLQSHSRFLLEALLNRVQNVDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIEAIK   80 (288)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e~Lk   80 (288)
                      |||||++|+||+++|++|+. +++|.+||++++|||||+||||++ ++|++|+|||++||      |.++.+|||.|+||
T Consensus         1 MilLe~~N~ii~~~L~~~~~-~~~p~~~d~~~~DFDgv~yHis~p-~~k~~l~lSi~~~~------~~~l~~~Ga~e~Lk   72 (317)
T 3dwl_D            1 MLSLDYNNIFIYELLTERFS-SENPSSIDQVVTDFDGVTFHISTP-EEKTKILISLSMKC------YPELVNYGTLDLLK   72 (317)
T ss_dssp             CCSCCSSCHHHHHHHHHHTT-SCC-----CEEEETTTEEEECCCC----CCCCEEEECSS------HHHHHTTTHHHHHH
T ss_pred             CcccccccHHHHHHHHHHhc-cCCCCccceeEEcCCCcEEEEeCC-CCCceEEEEEeccc------hHHHHhcCHHHHHH
Confidence            99999999999999999996 489999999999999999999996 89999999999998      77888999999999


Q ss_pred             HhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhchhHHHHHHHHhccc--------ccc----
Q 023031           81 AAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKT--------VAS----  148 (288)
Q Consensus        81 ~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aapF~~~f~~l~~~~--------~~~----  148 (288)
                      ++||+++   .+||+|||+||.+||++||++++++.++|+++|+||||||||||+++|+.+++..        .++    
T Consensus        73 ~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~~~~~  149 (317)
T 3dwl_D           73 QIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAPMLDK  149 (317)
T ss_dssp             HHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------CCCCH
T ss_pred             HHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccccccc
Confidence            9999997   6799999999999999999999999999999999999999999999997544210        111    


Q ss_pred             --cccceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccC-CCCCcccCCC
Q 023031          149 --DIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWS-SSPPLELKGV  225 (288)
Q Consensus       149 --~~~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s-~~PPlEL~~~  225 (288)
                        +++++++|+||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++++||||+|| ++||+||+|+
T Consensus       150 ~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlEL~~~  229 (317)
T 3dwl_D          150 QATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDI  229 (317)
T ss_dssp             HHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSCCCSC
T ss_pred             cccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChHHhCC
Confidence              2468999999999999999999999999999999999999999999999999999889999999999 6999999999


Q ss_pred             CCCCCCCCeeEEEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhhhcC
Q 023031          226 PSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQTLA  288 (288)
Q Consensus       226 ~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lkvL~  288 (288)
                      ++++.++|+|||||||||||++++.+++|||+||+|||||||||||  ||||||  +||++|||||+
T Consensus       230 ~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLn  296 (317)
T 3dwl_D          230 QGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLN  296 (317)
T ss_dssp             C-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988899999999999999999999  999999  56999999994

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D

Probab=100.00  E-value=4.1e-112  Score=793.23  Aligned_cols=270  Identities=29%  Similarity=0.539  Sum_probs=253.8

Q ss_pred             CcccCcccHHHHHHHHHhhhc---cCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHH
Q 023031            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (288)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e   77 (288)
                      |||||++|++|+++|++|+.+   ++||.++|++++|||||+||||+++++|++++|||++||      |.++.+|||.|
T Consensus         1 MilLe~~n~ii~~~L~~r~~~~~~~~~p~~~d~~~~DFDgv~yHis~~~~dk~~i~vSisl~~------~~~L~~~Ga~e   74 (300)
T 1k8k_D            1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF------YKELQAHGADE   74 (300)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT------HHHHHTTTHHH
T ss_pred             CccccccCHHHHHHHHHHHhhhccCCCCCccceEEecCCCcEEEeecCCCCCcEEEEEEEccc------hHHHhhcCHHH
Confidence            999999999999999999987   578999999999999999999999999999999999998      77888999999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHHhchhHHHHHHHHhcccccccccceeEEe
Q 023031           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVVLGAPLRVVLKHLASKTVASDIDQLLALV  157 (288)
Q Consensus        78 ~Lk~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~~aapF~~~f~~l~~~~~~~~~~~~~~i~  157 (288)
                      +||++||+++   .+||+|||+||.+||++||++   +.++|+++|+||||||||||+++|+..+.+   +++..+++|+
T Consensus        75 ~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~---~~~li~kia~LKrn~laapF~~~F~~~~~~---~~~~~~~~I~  145 (300)
T 1k8k_D           75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPAS---KDSIVHQAGMLKRNCFASVFEKYFQFQEEG---KEGENRAVIH  145 (300)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSC---HHHHHHHHHTHHHHHHHHHHHHHHHHHHHT---CCSCCCEEEE
T ss_pred             HHHHHccccc---cCCCCCccEEEEEEHHHCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCceEEee
Confidence            9999999997   379999999999999999998   457999999999999999999999944332   2333449999


Q ss_pred             ccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCC-CCCcccCCCCCCCCCCCeeE
Q 023031          158 HRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSS-SPPLELKGVPSETLSANAGF  236 (288)
Q Consensus       158 yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~-~PPlEL~~~~~~~~~~n~gy  236 (288)
                      ||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++||||+||+ +||+||+|++ .+.++|+||
T Consensus       146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy  222 (300)
T 1k8k_D          146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY  222 (300)
T ss_dssp             EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred             cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence            9999999999999999999999999999999999999999999999  99999999998 9999999998 466999999


Q ss_pred             EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHhhhcC
Q 023031          237 VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLSQTLA  288 (288)
Q Consensus       237 VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~lkvL~  288 (288)
                      |||||||||++++++++|||+||+|||||||||||  ||||||  +||++|||||+
T Consensus       223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLn  278 (300)
T 1k8k_D          223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLN  278 (300)
T ss_dssp             EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999  999999  89999999995

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=91.70  E-value=0.47  Score=40.63  Aligned_cols=114  Identities=20%  Similarity=0.293  Sum_probs=83.9

Q ss_pred             cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (288)
Q Consensus       151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~  230 (288)
                      -.|+.|..-+.|..+|.++-+.|.|.|...-.|+-++++.+-|+. |.-.|-.     +=+||-.         .|-   
T Consensus        48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv---  109 (168)
T 3dwl_F           48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRAE-----SFFILRR---------KPV---  109 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGTT-----TSTTBCS---------SCC---
T ss_pred             cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCc---
Confidence            467788888899999999999999999999999999999999987 4433321     2222222         111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchhhcHH--HHhh
Q 023031          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINRSILS--SLSQ  285 (288)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR~Rv~--~~lk  285 (288)
                         -|| |||.+--.|++.--+.+-|+.|.+|=.-.-=-|.-  -.+-+|.|.-  +||+
T Consensus       110 ---~GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~  166 (168)
T 3dwl_F          110 ---QGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLS  166 (168)
T ss_dssp             ---TTCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             ---CCcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               144 89999999998766789999999998877666655  6666775532  4554

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=90.83  E-value=0.39  Score=41.14  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (288)
Q Consensus       151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~  230 (288)
                      -.++.|...++|..+|.|+-+.|.|.+...-.|+-++++.+-|+. |.-.|-.     +=+||-.         .|-   
T Consensus        48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RAe-----~f~ILRr---------kPv---  109 (168)
T 1k8k_F           48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPV---  109 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCC---
T ss_pred             ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhccc-----ceEEeee---------CCc---
Confidence            457788888899999999999999999999999999999999987 4444421     2222322         111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchhhc
Q 023031          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINRSI  279 (288)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR~R  279 (288)
                         -|| |||.+---|++.--+.+-|+.|.+|=.-.-=-|.-  -.+-+|.|
T Consensus       110 ---~GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR  158 (168)
T 1k8k_F          110 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARAR  158 (168)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence               133 89999999998766789999999987665555544  45555644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1k8kd2	164	d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow	6e-48
d1k8kd1	120	d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B	5e-30

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  155 bits (393), Expect = 6e-48
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 147 ASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGL 206
             + +    + +R  E+ ++  + ++VTVVF   F D  D V+   F+QEF E RR +  
Sbjct: 15  GKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRAS-- 72

Query: 207 NNAPLCMWS-SSPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYV 265
           + AP  ++S   PPLELK   +  +  N G++TFV+FPRH      D T+  + TF  Y+
Sbjct: 73  HTAPQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYL 131

Query: 266 SYHVK 270
            YH+K
Sbjct: 132 HYHIK 136

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (269), Expect = 5e-30
 Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 15/129 (11%)

Query: 1   MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVS 57
           M+LL+ ++R + E L  + +N    +K   V+  + +FD V YH+     +   V++S+S
Sbjct: 1   MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60

Query: 58  LPVPPPETIFIGGLPFGAIEAIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHA 117
           L        +      GA E +K  YG     L  P  G+N++L  +L  LP +++   +
Sbjct: 61  LKF------YKELQAHGADELLKRVYG---SYLVNPESGYNVSLLYDLENLPASKD---S 108

Query: 118 LLVKIASVR 126
           ++ +   ++
Sbjct: 109 IVHQAGMLK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd1	120	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	92.11

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-73  Score=486.47  Aligned_cols=153  Identities=31%  Similarity=0.577  Sum_probs=144.3

Q ss_pred             hchhHHHHHHHHhcccccccccceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCC
Q 023031          130 LGAPLRVVLKHLASKTVASDIDQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNA  209 (288)
Q Consensus       130 ~aapF~~~f~~l~~~~~~~~~~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~A  209 (288)
                      |||+|+++|+.++++.   +++++++|+|||||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++|
T Consensus         1 Fa~~Fek~f~~q~~~~---~g~~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~--~~~A   75 (164)
T d1k8kd2           1 FASVFEKYFQFQEEGK---EGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTA   75 (164)
T ss_dssp             HHHHHHHHHHHHHHTC---CSCCCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTS
T ss_pred             CchHHHHHHHHHHhcc---cccceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcc--cCCC
Confidence            6899999998777663   3567899999999999999999999999999999999999999999999999987  8999


Q ss_pred             CCcccCC-CCCcccCCCCCCCCCCCeeEEEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh--hcHHHHh
Q 023031          210 PLCMWSS-SPPLELKGVPSETLSANAGFVTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR--SILSSLS  284 (288)
Q Consensus       210 Pqvl~s~-~PPlEL~~~~~~~~~~n~gyVTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR--~Rv~~~l  284 (288)
                      |||+||+ +||+||+|+++ ..++|+|||||||||||++++++++|||+|++|||||||||||  ||||||  +||++||
T Consensus        76 Pqvl~s~~~PPlel~~~~~-~~~~n~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~fl  154 (164)
T d1k8kd2          76 PQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFL  154 (164)
T ss_dssp             CEEEEEESSCCGGGTTTTC-CCSTTEEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCchHhcCCCc-ccCCCcceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999997 99999999866 6899999999999999999999999999999999999999999  999999  8999999


Q ss_pred             hhcC
Q 023031          285 QTLA  288 (288)
Q Consensus       285 kvL~  288 (288)
                      |||+
T Consensus       155 kvLn  158 (164)
T d1k8kd2         155 KVLN  158 (164)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9994

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-43  Score=286.76  Aligned_cols=117  Identities=26%  Similarity=0.494  Sum_probs=111.0

Q ss_pred             CcccCcccHHHHHHHHHhhhc---cCCCcceeeEEeecCceEEEEecCCCCCceEEEEEEeCCCCCCccccCCCCccHHH
Q 023031            1 MLLLQSHSRFLLEALLNRVQN---VDKATEVDYHWVEFDDVRYHVQVTMKNPHIVLLSVSLPVPPPETIFIGGLPFGAIE   77 (288)
Q Consensus         1 MilLe~~N~ii~~~L~~~~~~---~~kp~~vd~~~~DFDgv~yhis~~~~~k~~l~vSis~~~~~~e~~~~~~l~~G~~e   77 (288)
                      ||+||++|++|+++|++||.+   ++||.++|++++|||||+||||++++||++|+|||++||      |.++.+|||.|
T Consensus         1 MilLe~~N~ii~~tL~er~~~~~~g~kp~svD~~~~DFDgv~yHIs~~~~dk~ki~vSislk~------~~~L~~~Ga~e   74 (120)
T d1k8kd1           1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKF------YKELQAHGADE   74 (120)
T ss_dssp             CCSCCSSCHHHHHHHHHHHHHHHHTCCCCCCEEEEEETTTEEEEEECGGGCTTEEEEEEECTT------HHHHHTTTHHH
T ss_pred             CeecccccHHHHHHHHHHHhcccccCCCccceeEEEccCCcEEEeeCCCCCCceEEEEEEhhh------hHHHHHcCHHH
Confidence            999999999999999999975   478999999999999999999999999999999999998      77888999999


Q ss_pred             HHHHhhcccccccCCCCCCcceEEEEcCCCCCCChhhHHHHHHHHHHHHHHH
Q 023031           78 AIKAAYGNVVQILDPPRDGFNLTLKLNLSKLPPNEENKHALLVKIASVREVV  129 (288)
Q Consensus        78 ~Lk~~Yg~~~~~~~~pe~Gy~~tL~idl~~lp~~~~~~~~li~~~a~lk~~~  129 (288)
                      +|+++||+|+   .+||+|||+||.+||+++|++++   ++|+++|+|||||
T Consensus        75 ~L~~~Yg~~~---~~pE~GY~~sl~~dL~~lp~~~e---~li~~islLKRnc  120 (120)
T d1k8kd1          75 LLKRVYGSYL---VNPESGYNVSLLYDLENLPASKD---SIVHQAGMLKRNC  120 (120)
T ss_dssp             HHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHH---HHHHHHHTHHHHH
T ss_pred             HHHHHhhccc---CCCCCCceEEEEEEHHhCCCCHH---HHHHHHHhhccCC
Confidence            9999999997   67999999999999999999864   6999999999998

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.11  E-value=0.11  Score=42.41  Aligned_cols=106  Identities=19%  Similarity=0.269  Sum_probs=75.4

Q ss_pred             cceeEEeccCCceEEEeecCCeeEEEeeceecCCccchhhhHHHHHHHHHhhhcCCCCCCCcccCCCCCcccCCCCCCCC
Q 023031          151 DQLLALVHRPKESFFLIPQAEKVTVVFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPLCMWSSSPPLELKGVPSETL  230 (288)
Q Consensus       151 ~~~~~i~yR~~E~iyi~~~~DrVTViFst~F~D~~D~vigkvFLQEFvdaRr~~~~~~APqvl~s~~PPlEL~~~~~~~~  230 (288)
                      -.++.|...++|..+|.++-+.|.|.+.....|+-++++++-|+. |.-.|-.     +=++|-.         .|-   
T Consensus        47 l~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~Deie~iL~~kf~~-Fl~~rae-----~F~ILRr---------kPi---  108 (167)
T d1k8kf_          47 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPV---  108 (167)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCC---
T ss_pred             cccEEEEEcCCceEEEEcccceEEEEEEecccchHHHHHHHHHHH-HHHHhhh-----hceeeee---------cCc---
Confidence            467777778899999999999999999999999999999999987 5555532     2222222         111   


Q ss_pred             CCCeeE-EEEEecCCCCCCcchhhhHHHHhhhhhhhhhhhcc--cccchh
Q 023031          231 SANAGF-VTFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKV--GFLINR  277 (288)
Q Consensus       231 ~~n~gy-VTFvLFprH~~~~~~~~ti~~i~~FR~YlHYHIKc--aYmHsR  277 (288)
                         -|| |||.+---|++.-.+.+-|+.|.+|=.=.-=-|.-  -.+-+|
T Consensus       109 ---~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~r  155 (167)
T d1k8kf_         109 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNAR  155 (167)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               144 89999999998766678888888885544333333  334444