Citrus Sinensis ID: 023036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCRHSMHPT
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccccccEEccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEccccEEEccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcccEEEEEccccEEHccccccEEccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEccccEEEEcccccccccccccccHHHHHccccHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHcccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVgsltlmddrvVTEEAwsanflippdenvyggktIAEVCCDslkdfnpmvRVSVekgdlssldgefydkfDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEcqlrypsfeeaisvpwralprKASKLYFALRVLEQFeeaegrspgeisiaDLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLfqcrhsmhpt
Flexible Loop (DISEMBL)
mdgeelteQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAwsanflippdenvygGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVttkklinekcrklskrVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFeeaegrspgeisIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSlfqcrhsmhpt
Low Complexity Region (SEG)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDvvvvsccsvttkkLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCRHSMHPT
Disordered region (IsUnstruct)
***********ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEA*****GEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCR******
Disordered Region (DISOPRED)
****ELT**ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEG*******IADLPAVLKLKKEL****VRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCR******
Disordered Region (DISEMBL)
*********ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCRHSMHPT
Disordered Region (DISPRO)
*****LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNFKLVFVCIIGCLVIKLQSCCTLLSLFQCRHSMHPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
P0DI13	320	SUMO-activating enzyme su	yes	no	0.868	0.781	0.748	1e-112
P0DI12	320	SUMO-activating enzyme su	yes	no	0.868	0.781	0.748	1e-112
Q8VY78	322	SUMO-activating enzyme su	no	no	0.868	0.776	0.748	1e-111
Q54WI4	330	SUMO-activating enzyme su	yes	no	0.850	0.742	0.326	2e-33
Q8JGT5	344	SUMO-activating enzyme su	N/A	no	0.756	0.633	0.321	2e-31
A2VE14	346	SUMO-activating enzyme su	yes	no	0.840	0.699	0.310	4e-30
Q5NVN7	346	SUMO-activating enzyme su	yes	no	0.767	0.638	0.325	1e-29
Q9UBE0	346	SUMO-activating enzyme su	yes	no	0.767	0.638	0.325	1e-29
Q28DS0	347	SUMO-activating enzyme su	yes	no	0.756	0.628	0.305	3e-29
Q6IQS6	348	SUMO-activating enzyme su	yes	no	0.826	0.683	0.324	1e-28

>sp|P0DI13|SA1B2_ARATH SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana GN=SAE1B-2 PE=2 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEAN 250
           KLKKELCE N
Sbjct: 241 KLKKELCEGN 250

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A.
Arabidopsis thaliana (taxid: 3702)

>sp|P0DI12|SA1B1_ARATH SUMO-activating enzyme subunit 1B-1 OS=Arabidopsis thaliana GN=SAE1B-1 PE=2 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEAN 250
           KLKKELCE N
Sbjct: 241 KLKKELCEGN 250

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY78|SAE1A_ARATH SUMO-activating enzyme subunit 1A OS=Arabidopsis thaliana GN=SAE1A PE=2 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HILV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           MDDR+   EA +ANFLIPPDENVY GKT+AE+C DSLKDFNPMVRVSVEKGDLS L  +F
Sbjct: 61  MDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVRVSVEKGDLSMLGTDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +++FDVVV+   S  TKK +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY+K+K+E
Sbjct: 121 FEQFDVVVIGYGSRATKKYVNEKCRKLKKRVAFYTVDCRDSCGEIFVDLQDYKYTKKKLE 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           E +EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct: 181 EMVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query: 241 KLKKELCEAN 250
           ++KK+LCEAN
Sbjct: 241 EIKKQLCEAN 250

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1B.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54WI4|SAE1_DICDI SUMO-activating enzyme subunit 1 OS=Dictyostelium discoideum GN=sae1 PE=3 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 12/257 (4%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ LTE E  +YDR IR+WG DAQ +L +S +L  G+ G ++E  KN+VLAGV S+TL+D
Sbjct: 16  GKGLTEYEAKIYDRSIRLWGVDAQAKLRQSKVLFIGINGLMSEIIKNVVLAGVDSITLVD 75

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
           D ++T    SA+  I  D     GK I+     ++ + NP+V + V   ++ ++D +F  
Sbjct: 76  DHIITTSDLSAHLFINEDS---VGKVISTESVFAISELNPLVTIDVYDKEIETMDDQFIK 132

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
            + +VV+S  ++     +N  CRK    V+F         G  F DL   KY  +   E 
Sbjct: 133 NYTMVVISDKNLNNVSKVNSLCRK--NNVSFIFSHSFGLKGLFFSDLNEFKYFTKTTTEP 190

Query: 183 IECQLR---YPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239
            + +     + SF+E++   W     +    +FAL  L QFEE   R P  IS +DL  +
Sbjct: 191 PKTETHISIFKSFKESMGYDWSKTNSRTPLPFFALSTLYQFEEKHNRVPDNISDSDLSEL 250

Query: 240 LKLKKELCEANVRNFKL 256
               K +  +++  F L
Sbjct: 251 ----KSIINSSIEKFNL 263

The dimeric enzyme acts as a E1 ligase for sumo. It mediates ATP-dependent activation of sumo and formation of a thioester with a conserved cysteine residue on sae2.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8JGT5|SAE1_XENLA SUMO-activating enzyme subunit 1 OS=Xenopus laevis GN=sae1 PE=2 SV=1

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 130/252 (51%), Gaps = 34/252 (13%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           ++E+E A YDRQIR+WG +AQ+RL  S +L+ GM+G  AE  KN++LAGV +LTL+D   
Sbjct: 9   ISEEEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQ 68

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
           V+ E   A FLIP       G+  AE   +  ++ NPMV V  +  +++    +F+ +FD
Sbjct: 69  VSSEDSRAQFLIPSGSL---GQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFD 125

Query: 126 VVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKY----------- 174
           VV ++ C       +N  C K    + F+T D     G +F DL  H++           
Sbjct: 126 VVCLTSCPSDLLVRVNHICHK--HNIKFFTGDVYGYHGSMFADLGEHEFVEEKAKVTKAK 183

Query: 175 ---------SKQKIEET----IECQLRYPSFEEAISVPWRALP-----RKASKLYFALRV 216
                     K KI+ T    ++ ++++   ++A+ + WR+       +K    YF L+V
Sbjct: 184 PLVEDGPEAKKAKIDPTETILVKKKVQFCPLKDALEIDWRSEKAKSALKKTPTDYFLLQV 243

Query: 217 LEQFEEAEGRSP 228
           L +F   +GR P
Sbjct: 244 LMKFRTDKGRDP 255

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

>sp|A2VE14|SAE1_BOVIN SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 143/277 (51%), Gaps = 35/277 (12%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              V+ E   A FLI        G+  AE   +  ++ NPMV V V+  ++      F+ 
Sbjct: 68  HEQVSPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ + S +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTPDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISIA-DLPAVLKLKKELCEA 249
           L+VL +F   +GR P   +   D   +L+++ ++ +A
Sbjct: 243 LQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDA 279

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Bos taurus (taxid: 9913)

>sp|Q5NVN7|SAE1_PONAB SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 34/255 (13%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSP 228
           L+VL +F   +GR P
Sbjct: 243 LQVLLKFRTDKGRDP 257

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Pongo abelii (taxid: 9601)

>sp|Q9UBE0|SAE1_HUMAN SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 34/255 (13%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSP 228
           L+VL +F   +GR P
Sbjct: 243 LQVLLKFRTDKGRDP 257

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

>sp|Q28DS0|SAE1_XENTR SUMO-activating enzyme subunit 1 OS=Xenopus tropicalis GN=sae1 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 37/255 (14%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           ++E+E A YDRQIR+WG +AQ+RL  S +L+ GM+G  AE  KN++LAGV +LTL+D   
Sbjct: 9   ISEEEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQ 68

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
           V+ E   A FLIP       G+  AE   +  ++ NPMV V  +  +++    +F+ +FD
Sbjct: 69  VSSEDSRAQFLIPSGSL---GQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFD 125

Query: 126 VVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKY----------- 174
           VV ++ CS      ++  C K    + F+T D     G +F DL  H++           
Sbjct: 126 VVCLTSCSRDLLVRVDHICHK--HNIKFFTGDVFGYHGYMFADLGEHEFVEEKAKVAKVS 183

Query: 175 -SKQKIEETIEC---------------QLRYPSFEEAISVPW-----RALPRKASKLYFA 213
            +KQ++E+  E                ++++   ++A+ + W     ++  +K    +F 
Sbjct: 184 KAKQEVEDGPEAKKAKIDPTESILVKKKVQFCPLKDALEIDWHSEKAKSALKKTPTDFFL 243

Query: 214 LRVLEQFEEAEGRSP 228
           L+VL +F   + R P
Sbjct: 244 LQVLMKFRTDKKRDP 258

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IQS6|SAE1_DANRE SUMO-activating enzyme subunit 1 OS=Danio rerio GN=sae1 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 139/274 (50%), Gaps = 36/274 (13%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           ++E+E A YDRQIR+WG DAQ+RL  S +L+ G++G  AE  KN++LAGV  LTL+D   
Sbjct: 12  ISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQ 71

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
           VTEE+  A FLIP D +   G+  A+   +  +  NPMV V  +   + S   +F+ +FD
Sbjct: 72  VTEESRRAQFLIPVDAD---GQNHAQASLERAQFLNPMVEVKADTEPVESKPDDFFFQFD 128

Query: 126 VVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL-QNHKY---------- 174
            V ++ CS      +++ C   S+ +  +  D     G +F DL Q + Y          
Sbjct: 129 AVCLTRCSRDLMVRVDQLC--ASRNIKVFCGDVYGYNGYMFSDLGQEYHYVEEKPKVVKG 186

Query: 175 ----------SKQKIEET----IECQLRYPSFEEAISVPWRALPRKAS-----KLYFALR 215
                      K KI+      ++  + + S +EA+ V W     K+S       YF L+
Sbjct: 187 SNEANDGPEAKKPKIDPNETTMVKKTISFCSLKEALEVDWTTEKAKSSLKRIPADYFLLQ 246

Query: 216 VLEQFEEAEGRSPGEISIA-DLPAVLKLKKELCE 248
           VL +F   +GR P   S A D   +L+++ ++ E
Sbjct: 247 VLLKFRTDKGRDPQPDSFAEDSQLLLQIRDDVLE 280

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
225456343	323	PREDICTED: SUMO-activating enzyme subuni	0.878	0.783	0.822	1e-122
255540183	321	DNA damage tolerance protein rad31, puta	0.868	0.778	0.816	1e-118
224119708	323	predicted protein [Populus trichocarpa]	0.878	0.783	0.806	1e-117
449454812	321	PREDICTED: SUMO-activating enzyme subuni	0.878	0.788	0.779	1e-115
224134006	323	predicted protein [Populus trichocarpa]	0.878	0.783	0.790	1e-114
363814410	321	uncharacterized protein LOC100807922 [Gl	0.875	0.785	0.777	1e-113
356527937	321	PREDICTED: LOW QUALITY PROTEIN: SUMO-act	0.875	0.785	0.773	1e-112
18423184	320	SUMO-activating enzyme subunit 1B [Arabi	0.868	0.781	0.748	1e-110
22652852	320	SUMO activating enzyme 1b [Arabidopsis t	0.868	0.781	0.744	1e-110
297792369	320	sumo activating enzyme 1b [Arabidopsis l	0.868	0.781	0.74	1e-110

>gi|225456343|ref|XP_002283880.1| PREDICTED: SUMO-activating enzyme subunit 1B [Vitis vinifera] gi|297734431|emb|CBI15678.3| unnamed protein product [Vitis vinifera]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/253 (82%), Positives = 233/253 (92%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWG DAQRRLSK+HILV GMKGTV EFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGVDAQRRLSKAHILVSGMKGTVVEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +D R VTEEA SANFLIPPDENVY GKT+AE+CCDSLKDFNPMVRVSVEKGD+SS  G+F
Sbjct: 61  VDSREVTEEALSANFLIPPDENVYSGKTLAELCCDSLKDFNPMVRVSVEKGDISSFGGDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           YD+FDVVV+S CS  TKKLINEKCRK+SKR+AFYTVDCRDSCGEI+VDLQN+ YSK+K++
Sbjct: 121 YDRFDVVVISSCSFATKKLINEKCRKVSKRIAFYTVDCRDSCGEIYVDLQNYTYSKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET ECQL+YPSFEEA+++PWRALP+K +KLY A+RV+E+FEEAEGR+PGEISIADLP VL
Sbjct: 181 ETDECQLQYPSFEEAVTIPWRALPKKVTKLYLAMRVIERFEEAEGRNPGEISIADLPGVL 240

Query: 241 KLKKELCEANVRN 253
           KLKKELCEA   N
Sbjct: 241 KLKKELCEAQSFN 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540183|ref|XP_002511156.1| DNA damage tolerance protein rad31, putative [Ricinus communis] gi|223550271|gb|EEF51758.1| DNA damage tolerance protein rad31, putative [Ricinus communis]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/250 (81%), Positives = 229/250 (91%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGADAQRRL+KSHILV GMKGTVAEFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGADAQRRLTKSHILVYGMKGTVAEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR VTE+A SANFLIPPDEN   GKTIAE+CCDSLK+FNPMVRVSVE+GDLS    +F
Sbjct: 61  VDDRAVTEDALSANFLIPPDENGCAGKTIAELCCDSLKEFNPMVRVSVERGDLSGFSEDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVVVSCC++ TKKLINEKCRKL+KRVAFYTVDCRDSCGEIFVDLQ + Y+K+K++
Sbjct: 121 FDKFDVVVVSCCTLATKKLINEKCRKLAKRVAFYTVDCRDSCGEIFVDLQKYLYAKKKVD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET EC+L+YPSF+E+ISVPW+ LPRK SKLYF++RV+E+FEEAEGR PGEI I DLPAVL
Sbjct: 181 ETTECELQYPSFQESISVPWKTLPRKVSKLYFSMRVIERFEEAEGRKPGEIYIKDLPAVL 240

Query: 241 KLKKELCEAN 250
            LKKELCEA 
Sbjct: 241 SLKKELCEAQ 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119708|ref|XP_002318142.1| predicted protein [Populus trichocarpa] gi|222858815|gb|EEE96362.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/253 (80%), Positives = 229/253 (90%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           M+GEELTEQETALYDRQIRVWGADAQRRLSKSHILV GMKG +AEFCKNIVLAGVGSLTL
Sbjct: 1   MNGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGIIAEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR V+EEA SANFLIPPDE+V  GKT+AE+CCDSL++FNPMVRVSVEKGDL+SL  EF
Sbjct: 61  VDDRAVSEEALSANFLIPPDESVCIGKTLAELCCDSLREFNPMVRVSVEKGDLASLGAEF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVV+SCCS+ TKKLINEKCRKLSKRV+FY VDCRD CGEIFVDLQ + Y+K+K +
Sbjct: 121 FDKFDVVVISCCSLATKKLINEKCRKLSKRVSFYAVDCRDCCGEIFVDLQKYNYAKKKTD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
              EC+L+YPSF+EAISVPWR+LPRK SKLYFA+RV+E+FEEAEGR PGEI I DLPAVL
Sbjct: 181 GATECELQYPSFQEAISVPWRSLPRKVSKLYFAMRVIERFEEAEGRKPGEICIEDLPAVL 240

Query: 241 KLKKELCEANVRN 253
           KLKKELCEA   N
Sbjct: 241 KLKKELCEAQSVN 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454812|ref|XP_004145148.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus] gi|449470758|ref|XP_004153083.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus] gi|449526648|ref|XP_004170325.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/254 (77%), Positives = 231/254 (90%), Gaps = 1/254 (0%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQET LYDRQIRVWGADAQRRLSK+HILVCGMKG VAEFCKNIVLAG+GSLTL
Sbjct: 1   MDGEELTEQETQLYDRQIRVWGADAQRRLSKAHILVCGMKGAVAEFCKNIVLAGIGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +D+R+VTEEA SANFLIPPDE+V+GGK++AE+CCDSLKDFNPMVRVSV KG+ SS D EF
Sbjct: 61  VDNRLVTEEALSANFLIPPDESVFGGKSVAELCCDSLKDFNPMVRVSVIKGEPSSFDEEF 120

Query: 121 YDKFDVVVVSCCSVTTK-KLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKI 179
              FDV+VVSCCS+  K K +NEKCRKL KRV+FYTVDCRDSCGEIFVDLQ++KY+K+K+
Sbjct: 121 LKTFDVIVVSCCSLAEKVKSVNEKCRKLPKRVSFYTVDCRDSCGEIFVDLQDYKYAKKKL 180

Query: 180 EETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239
           E+T+ECQL YPSFE+AISVPW+  PRK SKL++ALRV+E+FEEAEGRSPGE S++DLP V
Sbjct: 181 EDTVECQLSYPSFEDAISVPWKVHPRKVSKLFYALRVIERFEEAEGRSPGETSVSDLPGV 240

Query: 240 LKLKKELCEANVRN 253
           LKLKKE+CE+ + N
Sbjct: 241 LKLKKEICESQLLN 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134006|ref|XP_002321713.1| predicted protein [Populus trichocarpa] gi|222868709|gb|EEF05840.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/253 (79%), Positives = 225/253 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILV GMKGT+ EFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGTITEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR VTEEA SANFL+PPDEN   GKT+AE+C DSL +FNPMVRVSVEKGDL+S   EF
Sbjct: 61  VDDRAVTEEALSANFLMPPDENACSGKTLAELCRDSLNEFNPMVRVSVEKGDLASFGVEF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVV+S CS+ TKKLINE+CRKLSKRV+FYTVDCRD CGEIFVDLQ + Y+K++++
Sbjct: 121 FDKFDVVVISFCSLATKKLINERCRKLSKRVSFYTVDCRDCCGEIFVDLQKYNYAKKRLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
            T EC+L+YPSF+EAISVPWR+LPRK SKLY A+RV+E+FEE EGR PGEI I DLPAVL
Sbjct: 181 GTTECELQYPSFQEAISVPWRSLPRKVSKLYLAMRVIERFEEDEGRKPGEICIEDLPAVL 240

Query: 241 KLKKELCEANVRN 253
           KLKKELCEA   N
Sbjct: 241 KLKKELCEAQSLN 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814410|ref|NP_001242842.1| uncharacterized protein LOC100807922 [Glycine max] gi|255640239|gb|ACU20410.1| unknown [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/252 (77%), Positives = 222/252 (88%)

Query: 2   DGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
           DGEELT +ETALYDRQIRVWGADAQRRLSKSH+LV GMKGTVAEFCKNIVLAGVGSLTL+
Sbjct: 4   DGEELTARETALYDRQIRVWGADAQRRLSKSHVLVYGMKGTVAEFCKNIVLAGVGSLTLV 63

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFY 121
           DDR  TEE  S+NFLIPPDENVY GKT+A +CC+SLKDFNPMV VSVEKGDLSS D EF 
Sbjct: 64  DDRAATEEMLSSNFLIPPDENVYSGKTLAGLCCNSLKDFNPMVHVSVEKGDLSSFDVEFL 123

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            KFDVVVVSCC+++ KKL N KCRKLSKRVAFY VDCRDSCGEIFVDLQ++KYSK+K +E
Sbjct: 124 SKFDVVVVSCCTLSAKKLANGKCRKLSKRVAFYAVDCRDSCGEIFVDLQDYKYSKKKQDE 183

Query: 182 TIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK 241
           T+EC L+YPSFE+A+SVPWRAL R+ SKLY+A+RV+E+FEEAEGRS GE+SIAD   +LK
Sbjct: 184 TVECDLKYPSFEDALSVPWRALHRRMSKLYYAMRVIEKFEEAEGRSTGEVSIADFSGLLK 243

Query: 242 LKKELCEANVRN 253
           LKKE+C     N
Sbjct: 244 LKKEICTTQSLN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527937|ref|XP_003532562.1| PREDICTED: LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 1B-like [Glycine max]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/252 (77%), Positives = 222/252 (88%)

Query: 2   DGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
           DGEELT  ETALYDRQIRV GAD  R LSKSH+LV GMKGTVAEFCKNIVLAGVGSLTL+
Sbjct: 4   DGEELTAHETALYDRQIRVRGADDHRXLSKSHVLVYGMKGTVAEFCKNIVLAGVGSLTLV 63

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFY 121
           DDRV TEE  S+NFLIPPDEN Y GKT+ E+CC+SLKDFNPMVRVS+EKGDLSS D EF+
Sbjct: 64  DDRVATEEVLSSNFLIPPDENAYSGKTLGELCCNSLKDFNPMVRVSIEKGDLSSFDVEFF 123

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            KFDVVVVSCCS++ KKL N+KCRKLSKRVAFY VDCRDSCGEIFVDLQ++KYSK+K +E
Sbjct: 124 SKFDVVVVSCCSLSAKKLANDKCRKLSKRVAFYAVDCRDSCGEIFVDLQDYKYSKKKQDE 183

Query: 182 TIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK 241
           T++C L+YPSFE+A+SVPWRAL R+ SKLY+A+RV+E+FEEAEGRS GE+SIADL  VLK
Sbjct: 184 TVKCDLKYPSFEDALSVPWRALHRRMSKLYYAMRVIEKFEEAEGRSAGEVSIADLSGVLK 243

Query: 242 LKKELCEANVRN 253
           LKKE+C A   N
Sbjct: 244 LKKEICTAQSLN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423184|ref|NP_568741.1| SUMO-activating enzyme subunit 1B [Arabidopsis thaliana] gi|30695915|ref|NP_568732.2| SUMO-activating enzyme subunit 1B [Arabidopsis thaliana] gi|384950747|sp|P0DI12.1|SA1B1_ARATH RecName: Full=SUMO-activating enzyme subunit 1B-1; AltName: Full=SUMO-activating enzyme subunit 1-2; AltName: Full=Ubiquitin-like 1-activating enzyme E1A gi|384950748|sp|P0DI13.1|SA1B2_ARATH RecName: Full=SUMO-activating enzyme subunit 1B-2; AltName: Full=SUMO-activating enzyme subunit 1-2; AltName: Full=Ubiquitin-like 1-activating enzyme E1A gi|8777391|dbj|BAA96981.1| ubiquitin activating enzyme [Arabidopsis thaliana] gi|9758767|dbj|BAB09143.1| ubiquitin activating enzyme [Arabidopsis thaliana] gi|20259427|gb|AAM14034.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|21436117|gb|AAM51305.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] gi|110742353|dbj|BAE99099.1| ubiquitin activating enzyme [Arabidopsis thaliana] gi|332008582|gb|AED95965.1| SUMO-activating enzyme subunit 1B [Arabidopsis thaliana] gi|332008595|gb|AED95978.1| SUMO-activating enzyme subunit 1B [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEAN 250
           KLKKELCE N
Sbjct: 241 KLKKELCEGN 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22652852|gb|AAN03850.1| SUMO activating enzyme 1b [Arabidopsis thaliana]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSF+EA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFQEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEAN 250
           KLKKELCE N
Sbjct: 241 KLKKELCEGN 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792369|ref|XP_002864069.1| sumo activating enzyme 1b [Arabidopsis lyrata subsp. lyrata] gi|297309904|gb|EFH40328.1| sumo activating enzyme 1b [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/250 (74%), Positives = 222/250 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT EA++ANFLI PDEN Y GKT+AE+CCDSLK+FNPMV VS+EKGDLS+   +F
Sbjct: 61  LDDRLVTTEAFNANFLILPDENAYVGKTVAEICCDSLKEFNPMVHVSIEKGDLSTFGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+KRVAFYTVDCR SCGEIF+DL+N+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKRVAFYTVDCRGSCGEIFIDLKNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+S PW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELMFPSFEEAVSAPWKPIPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEAN 250
           KLKKELCE N
Sbjct: 241 KLKKELCEGN 250

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2159727	320	SAE1B "SUMO-activating enzyme	0.868	0.781	0.72	1.2e-99
TAIR|locus:2832477	320	SAE1B "SUMO activating enzyme	0.868	0.781	0.72	1.2e-99
TAIR|locus:2117283	322	SAE1A "SUMO-activating enzyme	0.868	0.776	0.72	2.8e-98
UNIPROTKB|Q8JGT5	344	sae1 "SUMO-activating enzyme s	0.597	0.5	0.355	2e-30
DICTYBASE|DDB_G0279641	330	sae1 "sumo-activating enzyme s	0.850	0.742	0.319	3e-30
ZFIN|ZDB-GENE-040625-21	348	sae1 "SUMO1 activating enzyme	0.583	0.482	0.362	5.3e-30
RGD|1306098	349	Sae1 "SUMO1 activating enzyme	0.607	0.501	0.355	2.9e-29
MGI|MGI:1929264	350	Sae1 "SUMO1 activating enzyme	0.593	0.488	0.363	4.7e-29
UNIPROTKB|A2VE14	346	SAE1 "SUMO-activating enzyme s	0.593	0.494	0.357	4.7e-29
UNIPROTKB|F1RM03	346	SAE1 "Uncharacterized protein"	0.593	0.494	0.357	5.9e-29

TAIR|locus:2159727 SAE1B "SUMO-activating enzyme 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 180/250 (72%), Positives = 214/250 (85%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct:    61 LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             ++KFD              +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct:   121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct:   181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query:   241 KLKKELCEAN 250
             KLKKELCE N
Sbjct:   241 KLKKELCEGN 250

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2832477 SAE1B "SUMO activating enzyme 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 180/250 (72%), Positives = 214/250 (85%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct:    61 LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             ++KFD              +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct:   121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct:   181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query:   241 KLKKELCEAN 250
             KLKKELCE N
Sbjct:   241 KLKKELCEGN 250

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2117283 SAE1A "SUMO-activating enzyme 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 180/250 (72%), Positives = 214/250 (85%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HILV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGEELTEQETALYDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             MDDR+   EA +ANFLIPPDENVY GKT+AE+C DSLKDFNPMVRVSVEKGDLS L  +F
Sbjct:    61 MDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVRVSVEKGDLSMLGTDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             +++FD              +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY+K+K+E
Sbjct:   121 FEQFDVVVIGYGSRATKKYVNEKCRKLKKRVAFYTVDCRDSCGEIFVDLQDYKYTKKKLE 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             E +EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct:   181 EMVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query:   241 KLKKELCEAN 250
             ++KK+LCEAN
Sbjct:   241 EIKKQLCEAN 250

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q8JGT5 sae1 "SUMO-activating enzyme subunit 1" [Xenopus laevis (taxid:8355)]

 Score = 288 (106.4 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 63/177 (35%), Positives = 97/177 (54%)

Query:     6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
             ++E+E A YDRQIR+WG +AQ+RL  S +L+ GM+G  AE  KN++LAGV +LTL+D   
Sbjct:     9 ISEEEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQ 68

Query:    66 VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
             V+ E   A FLIP       G+  AE   +  ++ NPMV V  +  +++    +F+ +FD
Sbjct:    69 VSSEDSRAQFLIPSGSL---GQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFD 125

Query:   126 XXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
                           +N  C K    + F+T D     G +F DL  H++ ++K + T
Sbjct:   126 VVCLTSCPSDLLVRVNHICHK--HNIKFFTGDVYGYHGSMFADLGEHEFVEEKAKVT 180

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

DICTYBASE|DDB_G0279641 sae1 "sumo-activating enzyme subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 82/257 (31%), Positives = 127/257 (49%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G+ LTE E  +YDR IR+WG DAQ +L +S +L  G+ G ++E  KN+VLAGV S+TL+D
Sbjct:    16 GKGLTEYEAKIYDRSIRLWGVDAQAKLRQSKVLFIGINGLMSEIIKNVVLAGVDSITLVD 75

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
             D ++T    SA+  I  D +V  GK I+     ++ + NP+V + V   ++ ++D +F  
Sbjct:    76 DHIITTSDLSAHLFINED-SV--GKVISTESVFAISELNPLVTIDVYDKEIETMDDQFIK 132

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
              +               +N  CRK    V+F         G  F DL   KY  +   E 
Sbjct:   133 NYTMVVISDKNLNNVSKVNSLCRK--NNVSFIFSHSFGLKGLFFSDLNEFKYFTKTTTEP 190

Query:   183 IECQLR---YPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239
              + +     + SF+E++   W     +    +FAL  L QFEE   R P  IS +DL  +
Sbjct:   191 PKTETHISIFKSFKESMGYDWSKTNSRTPLPFFALSTLYQFEEKHNRVPDNISDSDLSEL 250

Query:   240 LKLKKELCEANVRNFKL 256
                 K +  +++  F L
Sbjct:   251 ----KSIINSSIEKFNL 263

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040625-21 sae1 "SUMO1 activating enzyme subunit 1" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 63/174 (36%), Positives = 96/174 (55%)

Query:     6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
             ++E+E A YDRQIR+WG DAQ+RL  S +L+ G++G  AE  KN++LAGV  LTL+D   
Sbjct:    12 ISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQ 71

Query:    66 VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
             VTEE+  A FLIP D +   G+  A+   +  +  NPMV V  +   + S   +F+ +FD
Sbjct:    72 VTEESRRAQFLIPVDAD---GQNHAQASLERAQFLNPMVEVKADTEPVESKPDDFFFQFD 128

Query:   126 XXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL-QNHKYSKQK 178
                           +++ C   S+ +  +  D     G +F DL Q + Y ++K
Sbjct:   129 AVCLTRCSRDLMVRVDQLCA--SRNIKVFCGDVYGYNGYMFSDLGQEYHYVEEK 180

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0061484 "hematopoietic stem cell homeostasis" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

RGD|1306098 Sae1 "SUMO1 activating enzyme subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 64/180 (35%), Positives = 98/180 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:    11 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLD 70

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct:    71 HEQVSPEDLGAQFLIRTG-SV--GQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 127

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
             +FD              +++ C + S  + F+T D     G  F +L  H++ ++K + T
Sbjct:   128 EFDAVCLTCCSKDVIIKVDQICHRNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVT 185

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;ISO;ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISO;ISS

GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1929264 Sae1 "SUMO1 activating enzyme subunit 1" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 64/176 (36%), Positives = 96/176 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:    12 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLD 71

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct:    72 HEQVSPEDPGAQFLIQTG-SV--GRNRAEASLERAQNLNPMVDVKVDTEDVEKKPESFFT 128

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             KFD              +++ C + S  + F+T D     G  F +L  H++ ++K
Sbjct:   129 KFDAVCLTCCSRDVIIKVDQICHRNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0043008 "ATP-dependent protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|A2VE14 SAE1 "SUMO-activating enzyme subunit 1" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 63/176 (35%), Positives = 96/176 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:     8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  ++      F+ 
Sbjct:    68 HEQVSPEDPGAQFLIRTG-SV--GRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFT 124

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             +FD              +++ C K S  + F+T D     G  F +L  H++ ++K
Sbjct:   125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 178

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RM03 SAE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 63/176 (35%), Positives = 97/176 (55%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:     8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  ++ +    F+ 
Sbjct:    68 HEQVSPEDPGAQFLIRTG-SV--GRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFT 124

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             +FD              +++ C K S  + F+T D     G  F +L  H++ ++K
Sbjct:   125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 178

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0DI12	SA1B1_ARATH	No assigned EC number	0.748	0.8680	0.7812	yes	no
P0DI13	SA1B2_ARATH	No assigned EC number	0.748	0.8680	0.7812	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017952001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (323 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036327001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (601 aa)				•	•		•		0.864
	GSVIVG00025945001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (101 aa)				•	•		•		0.476
	GSVIVG00019349001	RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)				•	•				0.459
	GSVIVG00010419001	SubName- Full=Chromosome undetermined scaffold_260, whole genome shotgun sequence; (103 aa)				•	•		•		0.459
	GSVIVG00012332001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_370, whole gen [...] (114 aa)				•	•		•		0.415

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	9e-72
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	1e-33
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	4e-33
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-27
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	9e-23
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	7e-21
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	2e-14
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	3e-12
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	8e-11
pfam00899	134	pfam00899, ThiF, ThiF family	4e-10
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	5e-08
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	3e-07
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	4e-07
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	4e-07
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	7e-07
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	1e-06
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	5e-06
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	5e-06
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	1e-05
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	5e-05
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	5e-05
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-04
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	0.003
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	0.004

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score =  219 bits (559), Expect = 9e-72
 Identities = 76/159 (47%), Positives = 98/159 (61%), Gaps = 5/159 (3%)

Query: 11  TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEA 70
            ALYDRQIR+WG +AQ+RL  + IL+ G+KG  AE  KN+VL+G+GSLT++DDR VTEE 
Sbjct: 1   IALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEED 60

Query: 71  WSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVS 130
             A FLIP +     G+  AE   + L+  NP V+VSV+  D+S    EF+ +FDVVV +
Sbjct: 61  LGAQFLIPAE---DLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVAT 117

Query: 131 CCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
             S      INE CRKL   V FY        G +F DL
Sbjct: 118 ELSRAELVKINELCRKL--GVKFYATGVHGLFGFVFADL 154

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score =  121 bits (305), Expect = 1e-33
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           LYDRQIR+WG +AQ +L  + +L+ G     AE  KN+VLAG+ S+T++D R+V+ E   
Sbjct: 1   LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLG 60

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLS--SLDGEFYDKFDVVVV 129
           +NF +   E    G   A    + L++ NP V++S VE+  LS  S   E+  KF +V+ 
Sbjct: 61  SNFFLDA-EVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIA 119

Query: 130 SCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
           +  +      +N+ CRK    + F +       G  F D 
Sbjct: 120 TEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score =  121 bits (307), Expect = 4e-33
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           LY RQ+ V G +A ++L KS++L+ G+ G   E  KN++LAGV S+TL D +  +    S
Sbjct: 1   LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLS 60

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
           + F +  ++    GK  AE     L + NP V V+V  G L++   +   KF VVV++  
Sbjct: 61  SQFYLREEDI---GKNRAEASQARLAELNPYVPVTVSTGPLTT---DELLKFQVVVLTDA 114

Query: 133 SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
           S+  +  INE C   S  + F + D R   G IF D 
Sbjct: 115 SLEDQLKINEFCH--SPGIKFISADTRGLFGSIFCDF 149

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  110 bits (277), Expect = 3e-27
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 6/161 (3%)

Query: 8   EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
           E + ALY RQ+ V G +A ++++KS++L+ GM G   E  KN+VLAGV S+TL D     
Sbjct: 1   EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQ 60

Query: 68  EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVV 127
               S+NF +  D+    G+  AE     L + NP V VS         + EF DKF  V
Sbjct: 61  AWDLSSNFFLSEDDV---GRNRAEAVVKKLAELNPYVHVSSSS---VPFNEEFLDKFQCV 114

Query: 128 VVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168
           V++  S+  +K IN+ C      +AF + D R   G +F D
Sbjct: 115 VLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCD 155

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 96.6 bits (241), Expect = 9e-23
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 14  YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA 73
           YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D   V EE    
Sbjct: 3   YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGN 62

Query: 74  NFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLD--GEFYDKFDVVVVS 130
           NF +        GK+ AE  C+ L++ NP V  S VE+   + LD    F+ +F VV+ +
Sbjct: 63  NFFLDAS---SLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIAT 119

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 89.0 bits (221), Expect = 7e-21
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 4   EELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
             L+++E   Y RQI +   G + Q++L  S +LV G  G  +   K + LAGVG LT++
Sbjct: 1   SMLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIV 60

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EF 120
           D   V        FL   + +V  GK  AEV   +L+  NP+V V      L   +  E 
Sbjct: 61  DFDTVELSNLQRQFLF-TEADV--GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEEL 117

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSK 176
             +FDVV+    +  T+ LIN+ C KL               G++ V +   K   
Sbjct: 118 IAQFDVVLDCTDNFETRYLINDACVKLGIP--LVHGGAIGFEGQVTVIIPGDKTPC 171

Length = 254

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)

Query: 14  YDRQIRV--WGADAQRRLSKSHILVCGMKG---TVAEFCKNIVLAGVGSLTLMDDRVVTE 68
           Y RQI +   G + Q +L  + +LV G  G     AE+      AGVG L L+DD VV  
Sbjct: 2   YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYL---AAAGVGKLGLVDDDVV-- 56

Query: 69  EAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDK 123
              S N    ++  + +V  G+  AE   + L+  NP V +    E+ D  + + E    
Sbjct: 57  -ELS-NLQRQILHTEADV--GQPKAEAAAERLRAINPDVEIEAYNERLDAENAE-ELIAG 111

Query: 124 FDVVVVSCC-SVTTKKLINEKCRKLSK 149
           +D +V+ C  +  T+ LIN+ C KL K
Sbjct: 112 YD-LVLDCTDNFATRYLINDACVKLGK 137

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           + + E   YDRQIR+WG   Q++L  + + + G+ G  AE  KN+VLAGV ++ + D+ +
Sbjct: 1   MRDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV--SVEKGDLSS 115
           VT+     N+L+  +     G T       +L+  NP V V  +V K D SS
Sbjct: 61  VTDADVCTNYLMQGE----AGGTRGARALGALQRLNPHVSVYDAVTKLDGSS 108

Length = 287

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 33  HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92
            +L+ G+ G  +E   N+  +GVG +TL+D   V     +  FL    +    GK  AEV
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEV 57

Query: 93  CCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151
               L + NP V V+     +S     +F D  D+V+ +  ++  ++ +N  C++L    
Sbjct: 58  AARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGI-- 115

Query: 152 AFYTVDC 158
               +D 
Sbjct: 116 --PVIDA 120

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 56.4 bits (137), Expect = 4e-10
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 31  KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90
            S +LV G  G  +   + +  AGVG LTL+D   V  E  + N  I   E+   GK  A
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTV--ELSNLNRQILFTESDI-GKPKA 57

Query: 91  EVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
           EV  + L+  NP V V      L+  +  E     D+VV +  +   + L+N+ C K   
Sbjct: 58  EVAKERLRAINPDVEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGI 117

Query: 150 RV 151
            +
Sbjct: 118 PL 119

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           L+E+E   YDRQI ++G + Q +L K+ + V G+ G  +     +  AGVG + L+D++ 
Sbjct: 2   LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ- 60

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKF 124
            T E  + N  I   E   G           L+ FN  +++    G LS  +  E     
Sbjct: 61  -TPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGV 119

Query: 125 DVVVVSCCSVTTKKLINEKCRK 146
           DV+V    +  T+ L+++   K
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHK 141

Length = 231

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 4   EELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
            EL+++E   Y+RQI  R +  D Q +L  + +LV G+ G      + +  AGVG+LTL+
Sbjct: 3   AELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLV 62

Query: 62  DDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS--SL 116
           D   V+     +N    ++  D  +  G+   E    +L   NP + +      L    L
Sbjct: 63  DFDTVS----LSNLQRQVLHDDATI--GQPKVESARAALARINPHIAIETINARLDDDEL 116

Query: 117 DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
                   D+V+    +V T+  +N  C    K
Sbjct: 117 A-ALIAGHDLVLDCTDNVATRNQLNRACFAAKK 148

Length = 245

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 4   EELTEQETALYDRQ--IRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
            ELT  E A Y R   I   G D Q+RL  + +LV G  G  +     +  AGVG+L ++
Sbjct: 13  AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIV 72

Query: 62  DDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG 118
           +  VV E    +N    +I    +V  G++ A+   DS+ + NP+V V + +  L   + 
Sbjct: 73  EFDVVDE----SNLQRQVIHGQSDV--GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNA 126

Query: 119 -EFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
            E + ++D+++    +  T+ L+N+      K
Sbjct: 127 VELFSQYDLILDGTDNFATRYLVNDAAVLAGK 158

Length = 392

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 14  YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
           Y RQ+ +   G + Q+RL  SH+L+ G  G  +     +  AGVG++ ++DD  V     
Sbjct: 2   YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD---L 58

Query: 72  SANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL--SSLDGEFYDKFDV 126
           S N    ++  +E+V  G+   EV    L++ N  ++V+  K  +   +L+    +  D+
Sbjct: 59  S-NLQRQILFTEEDV--GRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINN-VDL 114

Query: 127 VVVSCCSVTTKKLINEKCRKLSK 149
           V+    +  T+ LIN+ C  L  
Sbjct: 115 VLDCTDNFATRYLINDACVALGT 137

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 14  YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTE 68
           YD QI V+G   Q++L   +I + G      E  KN  L GV     G +T+ D  ++ +
Sbjct: 402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEK 461

Query: 69  EAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDK 123
              +  FL  P  ++  GK  +    D+    NP +++   +  +        + EFY+K
Sbjct: 462 SNLNRQFLFRP-HHI--GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK 518

Query: 124 FDVVVVSCCSVTTKKLINEKC 144
            DVV+ +  +V  ++ ++ +C
Sbjct: 519 LDVVINALDNVEARRYVDSRC 539

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 5   ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
               + TA   RQ+ +  +G + Q RL  + +LV G  G      +++  AGVG++TL+D
Sbjct: 16  TSELRRTA---RQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLID 72

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFY 121
           D  V         L     +V  G+   EV  + LK+  P +RV+  +  L++ +  E  
Sbjct: 73  DDTVDVSNIHRQILFGA-SDV--GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELL 129

Query: 122 DKFDVVVVSCCSVTTKKLI 140
           +  D+V+    S  TK L+
Sbjct: 130 NGVDLVLDGSDSFATKFLV 148

Length = 370

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 19  RVWGADAQRRLSKSHILVCGMKGTVAEFCKN-IVLAGVGSLTL--MDDRVVTEEAWSANF 75
           R++G D   +L ++H+ V G+ G V  +    +  +G+G +TL  MDD  VT    + N 
Sbjct: 18  RLYGEDGLEKLKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVT----NTNR 72

Query: 76  LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDKFDVVVVSCCS 133
            I        GK   EV  + +K  NP   V+   +     +L+      FD V+ +  S
Sbjct: 73  QIHALLGDI-GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDS 131

Query: 134 VTTKKLINEKCRK 146
           V  K  +   CR+
Sbjct: 132 VRAKVALIAYCRR 144

Length = 263

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 34  ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC 93
           +L+ G  G   E  KN+ L G G + ++D   +     +  FL  P +    G+  +EV 
Sbjct: 2   VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVA 58

Query: 94  CDSLKDFNPMVRVSVEK---GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
            +++ D NP  +V   +   G     +  F+++F ++V +  ++  ++ +N     L  
Sbjct: 59  AEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIV 117

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 22  GADAQRRLSKSHILVCGMKGT---VAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFL 76
           G +   +L  +H+ V G+ G     AE      LA  GVG LTL+D  VV     + N  
Sbjct: 2   GEEGLEKLRNAHVAVVGLGGVGSWAAE-----ALARSGVGKLTLIDFDVVCVS--NLNRQ 54

Query: 77  IPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDKFDVVVVSCCSV 134
           I    +   GK   EV  + ++D NP   V    E     + +       D VV +  S+
Sbjct: 55  IHALLSTV-GKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSI 113

Query: 135 TTKKLINEKCRK 146
             K  +   CRK
Sbjct: 114 RAKVALIAYCRK 125

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 14  YDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
           Y+RQI  R +  D Q  L  S +L+ G+ G      + +  AGVG+LTL+D   V+    
Sbjct: 5   YNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL 64

Query: 72  SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVS 130
               L   D N+  G+   E   D+L   NP + ++     L   +      + D+VV  
Sbjct: 65  QRQVL-HSDANI--GQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDC 121

Query: 131 CCSVTTKKLINEKC 144
             +V  +  +N +C
Sbjct: 122 TDNVEVRNQLNRQC 135

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 12  ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE 69
           A Y RQI +   G   Q+ L  + + V G  G  +     +  AGVG +T++DD  V   
Sbjct: 7   ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDL- 65

Query: 70  AWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108
              +N    +I     V  G+  AE   +++   NP V+V+V
Sbjct: 66  ---SNLHRQVIHSTAGV--GQPKAESAREAMLALNPDVKVTV 102

Length = 355

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 6   LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           LT+++   Y R +R+   G + QRRL ++ +L+ G  G  +     +  AGVG+L ++D 
Sbjct: 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDH 167

Query: 64  RVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GE 119
            VV      +N    ++  ++ V  G+   +     L   NP V+V   +  ++S +   
Sbjct: 168 DVVD----RSNLQRQILHTEDRV--GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEA 221

Query: 120 FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151
                DVVV    +  T+ L+N+ C KL K +
Sbjct: 222 LLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253

Length = 376

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 33  HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92
            ILV G  G   E  KN+ L+G  ++ ++D   +     +  FL    +++  GK  AEV
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFRE-KDI--GKPKAEV 57

Query: 93  CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINE 142
               + D  P V V+   G +   D EFY +F++++    S+  ++ IN 
Sbjct: 58  AAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWING 107

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 14 YDRQIRVW--GADAQRRLSKSHILVCGMK--GTV-AEFCKNIVLAGVGSLTLMD 62
          Y RQ      G + Q++L + H+L+ G    GT  AE    +V AGVG +T++D
Sbjct: 5  YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAE---MLVRAGVGKVTIVD 55

Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
PRK07411	390	hypothetical protein; Validated	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
PTZ00245	287	ubiquitin activating enzyme; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.98
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.98
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.97
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.97
PRK07877	722	hypothetical protein; Provisional	99.96
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	99.96
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.96
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.95
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.95
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.95
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.94
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.94
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.94
PRK06153	393	hypothetical protein; Provisional	99.92
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.9
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.82
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.74
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.59
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.57
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.98
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.94
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.87
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.83
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.59
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.57
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.43
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.23
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.19
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.18
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.18
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.1
PRK04148	134	hypothetical protein; Provisional	97.1
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.06
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.99
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.98
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	96.98
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.91
PRK10637	457	cysG siroheme synthase; Provisional	96.91
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.87
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.82
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.76
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.71
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.69
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.69
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.57
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.49
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.47
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.46
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.45
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.44
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	96.41
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	96.36
PLN00203	519	glutamyl-tRNA reductase	96.35
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.28
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.27
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.27
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.27
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.22
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.2
PTZ00117	319	malate dehydrogenase; Provisional	96.09
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.08
PRK09496	453	trkA potassium transporter peripheral membrane com	96.08
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.02
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.02
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.94
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.94
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.93
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.92
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.92
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.9
PRK05225	487	ketol-acid reductoisomerase; Validated	95.89
PRK07680	273	late competence protein ComER; Validated	95.89
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.89
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.89
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.86
PRK06141	314	ornithine cyclodeaminase; Validated	95.84
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.82
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.8
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.8
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.79
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.77
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.77
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.76
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.67
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.66
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
PRK07340	304	ornithine cyclodeaminase; Validated	95.62
PLN02602	350	lactate dehydrogenase	95.62
PRK07417	279	arogenate dehydrogenase; Reviewed	95.6
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.57
PRK08618	325	ornithine cyclodeaminase; Validated	95.55
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.51
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.49
PRK06197	306	short chain dehydrogenase; Provisional	95.49
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.48
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.46
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.46
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.42
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	95.41
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.34
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	95.24
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.19
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.12
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.12
PRK05854	313	short chain dehydrogenase; Provisional	95.11
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.11
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.07
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.06
PLN02688	266	pyrroline-5-carboxylate reductase	95.06
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.05
PRK07063	260	short chain dehydrogenase; Provisional	95.05
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.03
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.03
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.02
PRK07574	385	formate dehydrogenase; Provisional	95.02
PRK06223	307	malate dehydrogenase; Reviewed	95.02
PRK08291	330	ectoine utilization protein EutC; Validated	95.02
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.99
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	94.95
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.95
PLN03139	386	formate dehydrogenase; Provisional	94.94
PRK14982	340	acyl-ACP reductase; Provisional	94.94
PRK09242	257	tropinone reductase; Provisional	94.93
PRK10669	558	putative cation:proton antiport protein; Provision	94.92
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.91
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.91
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.91
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.9
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	94.9
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.9
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.89
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.83
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.83
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	94.82
PRK10537	393	voltage-gated potassium channel; Provisional	94.81
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.8
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.8
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.78
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.74
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.7
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.7
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.69
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.67
PLN02240	352	UDP-glucose 4-epimerase	94.66
PRK08251	248	short chain dehydrogenase; Provisional	94.66
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.58
PRK09496	453	trkA potassium transporter peripheral membrane com	94.57
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.57
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.57
PLN02427	386	UDP-apiose/xylose synthase	94.53
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.52
PRK06545	359	prephenate dehydrogenase; Validated	94.51
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.48
PRK08655	437	prephenate dehydrogenase; Provisional	94.47
PTZ00431	260	pyrroline carboxylate reductase; Provisional	94.46
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.45
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.4
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.4
PRK00048	257	dihydrodipicolinate reductase; Provisional	94.36
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	94.35
PLN03209	576	translocon at the inner envelope of chloroplast su	94.33
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.31
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.28
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.27
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.27
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.27
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.18
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.12
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.08
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.06
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.05
PRK13304	265	L-aspartate dehydrogenase; Reviewed	94.05
PRK08507	275	prephenate dehydrogenase; Validated	94.04
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.03
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	93.95
PRK07831	262	short chain dehydrogenase; Provisional	93.94
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.94
PRK05875	276	short chain dehydrogenase; Provisional	93.87
PRK07478	254	short chain dehydrogenase; Provisional	93.75
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.67
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.63
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.62
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.62
PRK07062	265	short chain dehydrogenase; Provisional	93.61
PLN00106	323	malate dehydrogenase	93.57
PRK15059	292	tartronate semialdehyde reductase; Provisional	93.55
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.46
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.43
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.36
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.34
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.34
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	93.32
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.31
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.3
PTZ00325	321	malate dehydrogenase; Provisional	93.29
PRK05866	293	short chain dehydrogenase; Provisional	93.29
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.28
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.26
PRK06949	258	short chain dehydrogenase; Provisional	93.23
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.22
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.21
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.2
PRK05867	253	short chain dehydrogenase; Provisional	93.18
PLN02780	320	ketoreductase/ oxidoreductase	93.18
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	93.14
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.13
PRK05442	326	malate dehydrogenase; Provisional	93.13
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	93.12
PRK06046	326	alanine dehydrogenase; Validated	93.12
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.12
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	93.08
PLN02928	347	oxidoreductase family protein	93.0
PRK07576	264	short chain dehydrogenase; Provisional	92.96
PRK13243	333	glyoxylate reductase; Reviewed	92.87
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.83
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.76
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.76
PRK06436	303	glycerate dehydrogenase; Provisional	92.69
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.66
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	92.66
PRK06172	253	short chain dehydrogenase; Provisional	92.61
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	92.57
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	92.56
PRK06194	287	hypothetical protein; Provisional	92.56
PLN02206	442	UDP-glucuronate decarboxylase	92.55
PRK12939	250	short chain dehydrogenase; Provisional	92.52
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	92.52
PRK09186	256	flagellin modification protein A; Provisional	92.48
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.48
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	92.47
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	92.45
PRK00811	283	spermidine synthase; Provisional	92.45
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	92.45
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	92.43
PLN00016	378	RNA-binding protein; Provisional	92.4
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.39
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.34
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.32
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.3
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.29
PRK06181	263	short chain dehydrogenase; Provisional	92.29
COG0281	432	SfcA Malic enzyme [Energy production and conversio	92.28
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.24
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	92.21
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.15
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	92.14
PRK06139	330	short chain dehydrogenase; Provisional	92.05
PRK06199	379	ornithine cyclodeaminase; Validated	92.04
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.03
PRK08339	263	short chain dehydrogenase; Provisional	92.02
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.0
PLN02852	491	ferredoxin-NADP+ reductase	91.98
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.97
PLN03075	296	nicotianamine synthase; Provisional	91.92
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	91.9
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	91.87
PLN02896	353	cinnamyl-alcohol dehydrogenase	91.86
PRK06125	259	short chain dehydrogenase; Provisional	91.86
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	91.83
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.83
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.8
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	91.79
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	91.77
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.64
PRK10675	338	UDP-galactose-4-epimerase; Provisional	91.64
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.64
PRK12746	254	short chain dehydrogenase; Provisional	91.6
PRK07035	252	short chain dehydrogenase; Provisional	91.56
PRK08589	272	short chain dehydrogenase; Validated	91.56
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	91.55
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.5
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.44
PRK07814	263	short chain dehydrogenase; Provisional	91.44
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.42
PRK08818	370	prephenate dehydrogenase; Provisional	91.39
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.37
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.35
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	91.31
PRK06940	275	short chain dehydrogenase; Provisional	91.27
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	91.26
PRK12937	245	short chain dehydrogenase; Provisional	91.22
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.18
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	91.09
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	91.02
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.99
PRK05876	275	short chain dehydrogenase; Provisional	90.99
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	90.99
PRK12367	245	short chain dehydrogenase; Provisional	90.97
PRK06138	252	short chain dehydrogenase; Provisional	90.95
PRK12829	264	short chain dehydrogenase; Provisional	90.94
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.91
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.89
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.88
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	90.86
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.82
CHL00194	317	ycf39 Ycf39; Provisional	90.8
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	90.78
PRK07774	250	short chain dehydrogenase; Provisional	90.76
PRK09330	384	cell division protein FtsZ; Validated	90.75
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.75
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	90.73
PRK08085	254	gluconate 5-dehydrogenase; Provisional	90.73
PRK05855	582	short chain dehydrogenase; Validated	90.72
PLN02214	342	cinnamoyl-CoA reductase	90.69
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.64
KOG0409	327	consensus Predicted dehydrogenase [General functio	90.63
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	90.61
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.57
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	90.54
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	90.48
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.47
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	90.47
PRK15076	431	alpha-galactosidase; Provisional	90.46
PLN02253	280	xanthoxin dehydrogenase	90.46
PRK06198	260	short chain dehydrogenase; Provisional	90.46
PRK07109	334	short chain dehydrogenase; Provisional	90.42
PRK06487	317	glycerate dehydrogenase; Provisional	90.41
PRK12480	330	D-lactate dehydrogenase; Provisional	90.41
PTZ00188	506	adrenodoxin reductase; Provisional	90.38
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	90.38
PRK07326	237	short chain dehydrogenase; Provisional	90.31
PLN02572	442	UDP-sulfoquinovose synthase	90.29
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	90.28
PRK06914	280	short chain dehydrogenase; Provisional	90.27
PRK08374	336	homoserine dehydrogenase; Provisional	90.27
PRK07102	243	short chain dehydrogenase; Provisional	90.19
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	90.18
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	90.18
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	90.18
PRK08862	227	short chain dehydrogenase; Provisional	90.18
PRK12827	249	short chain dehydrogenase; Provisional	90.17
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	90.17
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	90.13
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.12
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	90.1
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	90.07
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	90.07
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	90.03
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.01
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.99
PRK13018	378	cell division protein FtsZ; Provisional	89.96
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	89.96
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	89.94
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	89.85
PRK06932	314	glycerate dehydrogenase; Provisional	89.83
PRK07024	257	short chain dehydrogenase; Provisional	89.78
PLN02653	340	GDP-mannose 4,6-dehydratase	89.76
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.74
TIGR00036	266	dapB dihydrodipicolinate reductase.	89.72
PRK08703	239	short chain dehydrogenase; Provisional	89.69
PRK08643	256	acetoin reductase; Validated	89.65
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	89.63
PLN02858	1378	fructose-bisphosphate aldolase	89.6
PLN02166	436	dTDP-glucose 4,6-dehydratase	89.52
PRK06196	315	oxidoreductase; Provisional	89.48
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	89.47
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	89.43
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.39
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	89.36
PRK07589	346	ornithine cyclodeaminase; Validated	89.35
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.32
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	89.25
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	89.24
PRK05872	296	short chain dehydrogenase; Provisional	89.22
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	89.17
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	89.14
PRK06124	256	gluconate 5-dehydrogenase; Provisional	89.06
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	89.06
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	89.04
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.03
PRK05650	270	short chain dehydrogenase; Provisional	89.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.99
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.97
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	88.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	88.95
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	88.94
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	88.9
PLN02695	370	GDP-D-mannose-3',5'-epimerase	88.9
PRK07074	257	short chain dehydrogenase; Provisional	88.9
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	88.88
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.84
PRK09126	392	hypothetical protein; Provisional	88.81
PRK08628	258	short chain dehydrogenase; Provisional	88.79
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.77
PRK07890	258	short chain dehydrogenase; Provisional	88.76
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.76
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	88.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	88.72
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	88.7
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	88.68
PRK14031	444	glutamate dehydrogenase; Provisional	88.67
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	88.65
PLN02650	351	dihydroflavonol-4-reductase	88.62
PRK06184	502	hypothetical protein; Provisional	88.6
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	88.59
PRK06523	260	short chain dehydrogenase; Provisional	88.56
PRK08264	238	short chain dehydrogenase; Validated	88.55
PRK06823	315	ornithine cyclodeaminase; Validated	88.53
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.51
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	88.5
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	88.5
PRK07236	386	hypothetical protein; Provisional	88.39
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	88.37
PRK08324	681	short chain dehydrogenase; Validated	88.28
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	88.26
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	88.25
PLN02775	286	Probable dihydrodipicolinate reductase	88.24
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.21
PRK07067	257	sorbitol dehydrogenase; Provisional	88.19
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	88.18
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.08
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	88.01
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	88.01
PRK06270	341	homoserine dehydrogenase; Provisional	87.99
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	87.94
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	87.87
PRK13984	604	putative oxidoreductase; Provisional	87.86
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	87.79
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	87.77
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	87.77
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.76
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.71
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	87.71
PRK07677	252	short chain dehydrogenase; Provisional	87.69
PRK13529	563	malate dehydrogenase; Provisional	87.68
PLN02858	1378	fructose-bisphosphate aldolase	87.68
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	87.67
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	87.66
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	87.64
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	87.63
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	87.62
PRK06407	301	ornithine cyclodeaminase; Provisional	87.6
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	87.58
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.57
PRK08013	400	oxidoreductase; Provisional	87.55
PRK12743	256	oxidoreductase; Provisional	87.54
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	87.51
PRK12938	246	acetyacetyl-CoA reductase; Provisional	87.51
PLN02494	477	adenosylhomocysteinase	87.46
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	87.42
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	87.41
PRK09291	257	short chain dehydrogenase; Provisional	87.4
PTZ00317	559	NADP-dependent malic enzyme; Provisional	87.38
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	87.34
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	87.31
PRK07791	286	short chain dehydrogenase; Provisional	87.29
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	87.29
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.28
PLN02366	308	spermidine synthase	87.25
PRK06114	254	short chain dehydrogenase; Provisional	87.21
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	87.21
PRK06185	407	hypothetical protein; Provisional	87.2
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	87.2
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	87.19
COG2910	211	Putative NADH-flavin reductase [General function p	87.18
PRK12744	257	short chain dehydrogenase; Provisional	87.18
PLN02740	381	Alcohol dehydrogenase-like	87.17
TIGR01746	367	Thioester-redct thioester reductase domain. It has	87.12

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-59  Score=411.27  Aligned_cols=269  Identities=52%  Similarity=0.766  Sum_probs=246.3

Q ss_pred             CCCCCCCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCC
Q 023036            1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD   80 (288)
Q Consensus         1 ~~~~~l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~   80 (288)
                      |++++||++|.+.|||||||||.++|++|+++||||+|.+|+|+|++|||+|+||+++|++|+..|+++|++.|||+..+
T Consensus         1 m~~~else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~   80 (331)
T KOG2014|consen    1 MKGEELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS   80 (331)
T ss_pred             CchhhhhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        81 di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ++   |++||+++.++++.+||.|++....+++.+.+++||.+||+||.+..+.+....+|++||+  .+++|+.++++|
T Consensus        81 ~v---g~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk--~~i~F~a~d~~g  155 (331)
T KOG2014|consen   81 SV---GQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRK--LNIAFYAGDCFG  155 (331)
T ss_pred             hh---chHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHh--cCceEEeccccc
Confidence            99   9999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             ceEEEEEEcCCeeeecCCC-----------------CccceeeecCCChhhhhcCCCc---C-CCCCchhHHHHHHHHHH
Q 023036          161 SCGEIFVDLQNHKYSKQKI-----------------EETIECQLRYPSFEEAISVPWR---A-LPRKASKLYFALRVLEQ  219 (288)
Q Consensus       161 ~~G~v~~d~~~~~~~~~~~-----------------~~~~~~~~~f~~l~~~~~~~~~---~-~~~~~~~~~~~~~aL~~  219 (288)
                      ++||+|+|+++|.|.+.+-                 ++.+.+...|||++|+++.+|.   + .++|..++++++.++..
T Consensus       156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~  235 (331)
T KOG2014|consen  156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK  235 (331)
T ss_pred             eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence            9999999999999886410                 1123456799999999999995   2 24677889999999999


Q ss_pred             HHHHhCCCCCCCCcchHHHHHHHHHHHHHhcC-----------------CCcchhhhhhhHHHHHHHhhccc
Q 023036          220 FEEAEGRSPGEISIADLPAVLKLKKELCEANV-----------------RNFKLVFVCIIGCLVIKLQSCCT  274 (288)
Q Consensus       220 f~~~~~~~P~~~~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~~~~~i~~~~~~~  274 (288)
                      |++.+++.|+....+|.+.+..+.++.++..+                 -+..+++||++||||||++|++-
T Consensus       236 f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~  307 (331)
T KOG2014|consen  236 FRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKG  307 (331)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCC
Confidence            99999999986678899999999999987322                 23367799999999999999863

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-54  Score=417.23  Aligned_cols=259  Identities=31%  Similarity=0.477  Sum_probs=239.4

Q ss_pred             HHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC
Q 023036            8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK   87 (288)
Q Consensus         8 ~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~   87 (288)
                      +.++.+|+||+++.|.++++||..++|||.|++|+|.||||||+|+||+++||.|+..+..+||+.|||++++||   |+
T Consensus        14 ~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk   90 (1013)
T KOG2012|consen   14 EIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK   90 (1013)
T ss_pred             hhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence            667899999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             cHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036           88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus        88 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      +||++..++|++||++|.|.+++..+   +.+++++|++||.|..+.+...+|+++||+  ++|.||.+.+.|++|++||
T Consensus        91 nRA~as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fch~--~~i~fi~ad~RGLfg~lFC  165 (1013)
T KOG2012|consen   91 NRAEASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFCHS--HGIAFIAADTRGLFGQLFC  165 (1013)
T ss_pred             chHHHHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHHHh--cCeEEEEeccchhhhhhhc
Confidence            99999999999999999999998764   478999999999999999999999999999  9999999999999999999


Q ss_pred             EcCC-eeeecCCCCc-----------------------------------------------------------------
Q 023036          168 DLQN-HKYSKQKIEE-----------------------------------------------------------------  181 (288)
Q Consensus       168 d~~~-~~~~~~~~~~-----------------------------------------------------------------  181 (288)
                      |||+ |++.|.+|++                                                                 
T Consensus       166 DFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt  245 (1013)
T KOG2012|consen  166 DFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDT  245 (1013)
T ss_pred             cCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEeccc
Confidence            9996 9999988764                                                                 


Q ss_pred             ---------------cceeeecCCChhhhhcCC------CcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHHH
Q 023036          182 ---------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (288)
Q Consensus       182 ---------------~~~~~~~f~~l~~~~~~~------~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~~  240 (288)
                                     +.|++++|+||.+.+..|      ++++ .|++.+|.+|+||++|+++|||+|.+++++|+++|.
T Consensus       246 ~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~-~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~  324 (1013)
T KOG2012|consen  246 TEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKF-DRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELV  324 (1013)
T ss_pred             cchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccc-cccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHH
Confidence                           356789999999999665      4555 699999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc----CCCc-----------------chhhhhhhHHHHHHHhhcccc
Q 023036          241 KLKKELCEAN----VRNF-----------------KLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       241 ~~~~~~~~~~----~~~~-----------------~~~~g~~~~~~~i~~~~~~~~  275 (288)
                      ++++++.+..    .++.                 .+++||++|||++||.|+++-
T Consensus       325 ~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~  380 (1013)
T KOG2012|consen  325 ELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFT  380 (1013)
T ss_pred             HHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCcc
Confidence            9999998752    2222                 455999999999999999874

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=1.1e-52  Score=431.51  Aligned_cols=259  Identities=30%  Similarity=0.443  Sum_probs=233.7

Q ss_pred             HHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036            9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (288)
Q Consensus         9 ~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~   88 (288)
                      .|.++|||||++||.++|+||++++|||+|+||+|+|+||||+++|||+|+|+|++.|+.+||+||||++++||   |++
T Consensus         2 id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~   78 (1008)
T TIGR01408         2 IDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRN   78 (1008)
T ss_pred             chHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---Cch
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC--ceEEEEeeecceEEEE
Q 023036           89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--VAFYTVDCRDSCGEIF  166 (288)
Q Consensus        89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~--ip~i~~~~~G~~G~v~  166 (288)
                      ||++++++|+++||+|+|+++...+   +.+++++||+||+|.++.+.+..+|++||+  ++  +|||.+++.|++|++|
T Consensus        79 Kaea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~t~~~~~~~~~in~~cr~--~~~~I~fI~~~~~G~~G~vf  153 (1008)
T TIGR01408        79 RAEAVVKKLAELNPYVHVSSSSVPF---NEEFLDKFQCVVLTEMSLPLQKEINDFCHS--QCPPIAFISADVRGLFGSLF  153 (1008)
T ss_pred             HHHHHHHHHHHHCCCceEEEecccC---CHHHHcCCCEEEECCCCHHHHHHHHHHHHH--cCCCeEEEEEeecceEEEEE
Confidence            9999999999999999999998755   467999999999999999999999999999  88  9999999999999999


Q ss_pred             EEcCC-eeeecCCCCc----------------------------------------------------------------
Q 023036          167 VDLQN-HKYSKQKIEE----------------------------------------------------------------  181 (288)
Q Consensus       167 ~d~~~-~~~~~~~~~~----------------------------------------------------------------  181 (288)
                      +|||+ |.+.+++|++                                                                
T Consensus       154 ~D~g~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~d  233 (1008)
T TIGR01408       154 CDFGDEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGD  233 (1008)
T ss_pred             ecCCCceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEecc
Confidence            99997 7888765421                                                                


Q ss_pred             ----------------cceeeecCCChhhhhcCC------CcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHH
Q 023036          182 ----------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV  239 (288)
Q Consensus       182 ----------------~~~~~~~f~~l~~~~~~~------~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~  239 (288)
                                      +.+.++.|++|.+.+..|      |.++ .+++.+|++++||++|+++||++|.+++.+|++++
T Consensus       234 t~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~-~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~  312 (1008)
T TIGR01408       234 TTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKP-ERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEEL  312 (1008)
T ss_pred             ccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhc-CCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence                            013456899999988765      7776 58899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-----C-----------------cchhhhhhhHHHHHHHhhccccc
Q 023036          240 LKLKKELCEANVR-----N-----------------FKLVFVCIIGCLVIKLQSCCTLL  276 (288)
Q Consensus       240 ~~~~~~~~~~~~~-----~-----------------~~~~~g~~~~~~~i~~~~~~~~~  276 (288)
                      .++++++.++.+.     +                 ...++||++||||||++|+++..
T Consensus       313 ~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~P  371 (1008)
T TIGR01408       313 LKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSP  371 (1008)
T ss_pred             HHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCC
Confidence            9999999876542     1                 23459999999999999999854

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=5.1e-50  Score=380.02  Aligned_cols=230  Identities=25%  Similarity=0.431  Sum_probs=208.8

Q ss_pred             HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (288)
Q Consensus        12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~   91 (288)
                      +|||||+||||.++|++|++++|||+|+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+   |++||+
T Consensus         1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~   77 (425)
T cd01493           1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE   77 (425)
T ss_pred             CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEE
Q 023036           92 VCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD  168 (288)
Q Consensus        92 ~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d  168 (288)
                      +++++|+++||+|+++.+.+.+++   ...+++++||+||+|.++......++++|++  +++|+|.+++.|++|+++++
T Consensus        78 ~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~--~~iPlI~~~s~G~~G~v~v~  155 (425)
T cd01493          78 ATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWS--ANIPLLYVRSYGLYGYIRIQ  155 (425)
T ss_pred             HHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEecccCEEEEEEE
Confidence            999999999999999999887653   3478999999999999999899999999999  99999999999999999999


Q ss_pred             cCCeeeecCCCCcc-ceeee--cCCChhhhh-cCCCcCCC----CCchhHHHHHHHHHHHHHHhC-CCCCCCCcchHHHH
Q 023036          169 LQNHKYSKQKIEET-IECQL--RYPSFEEAI-SVPWRALP----RKASKLYFALRVLEQFEEAEG-RSPGEISIADLPAV  239 (288)
Q Consensus       169 ~~~~~~~~~~~~~~-~~~~~--~f~~l~~~~-~~~~~~~~----~~~~~~~~~~~aL~~f~~~~~-~~P~~~~~~d~~~~  239 (288)
                      +++|.+++++++.. .+.++  |||+|.++. +.+++.++    +|+|++.+++++|++|+..|+ .+|.  +.+|.++|
T Consensus       156 ~~~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~--~~~ek~~f  233 (425)
T cd01493         156 LKEHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPS--TYKEKKEF  233 (425)
T ss_pred             ECCeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCC--CHHHHHHH
Confidence            99999999987653 33344  999999987 56777764    589999999999999999995 5554  57899999


Q ss_pred             HHHHHHHHH
Q 023036          240 LKLKKELCE  248 (288)
Q Consensus       240 ~~~~~~~~~  248 (288)
                      ++++.+..+
T Consensus       234 ~~~i~~~~~  242 (425)
T cd01493         234 RDLVRSLMR  242 (425)
T ss_pred             HHHHHHhcc
Confidence            998877665

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=3e-46  Score=337.34  Aligned_cols=161  Identities=35%  Similarity=0.539  Sum_probs=153.9

Q ss_pred             hhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHH
Q 023036           13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV   92 (288)
Q Consensus        13 rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~   92 (288)
                      +||||+++||.++|+||++++|+|+|+||+|+|+||||+++||++|+|+|+|.++.+||+||||++++|+   |++||++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea   77 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEA   77 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHH
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC-
Q 023036           93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN-  171 (288)
Q Consensus        93 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~-  171 (288)
                      ++++|+++||+|+|+++...   .+++++++||+||+|.++.+.+..+|++||+  +++|||.+++.|++|++|+|+|+ 
T Consensus        78 ~~~~L~eLNp~V~V~~~~~~---~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~--~~ipfI~a~~~G~~G~vf~dfg~~  152 (286)
T cd01491          78 SQARLAELNPYVPVTVSTGP---LTTDELLKFQVVVLTDASLEDQLKINEFCHS--PGIKFISADTRGLFGSIFCDFGDE  152 (286)
T ss_pred             HHHHHHHHCCCCEEEEEecc---CCHHHHhcCCEEEEecCCHHHHHHHHHHHHH--cCCEEEEEeccccEEEEEecCCCe
Confidence            99999999999999999865   3568899999999999999999999999999  99999999999999999999997 


Q ss_pred             eeeecCCCCc
Q 023036          172 HKYSKQKIEE  181 (288)
Q Consensus       172 ~~~~~~~~~~  181 (288)
                      |.+.|.++++
T Consensus       153 f~~~d~~ge~  162 (286)
T cd01491         153 FTVYDPNGEE  162 (286)
T ss_pred             EEEeCCCCCc
Confidence            8888877765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=5.7e-44  Score=308.20  Aligned_cols=153  Identities=49%  Similarity=0.790  Sum_probs=147.6

Q ss_pred             HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (288)
Q Consensus        12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~   91 (288)
                      +|||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++||||++++|+   |++|++
T Consensus         2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~   78 (197)
T cd01492           2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE   78 (197)
T ss_pred             chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036           92 VCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (288)
Q Consensus        92 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~  169 (288)
                      +++++|+++||+++++.+...+.+..++++++||+||+|.++.+.+..++++|++  +++|||.+++.|++|++|+|+
T Consensus        79 a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~d~  154 (197)
T cd01492          79 ASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRK--LGVKFYATGVHGLFGFVFADL  154 (197)
T ss_pred             HHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecCCEEEEEEec
Confidence            9999999999999999998888766788999999999999999999999999999  999999999999999999654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-44  Score=329.02  Aligned_cols=230  Identities=22%  Similarity=0.370  Sum_probs=210.7

Q ss_pred             HHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036            9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (288)
Q Consensus         9 ~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~   88 (288)
                      +..++||||+|+||.+||..|..++||++|++++|+|++|||+++|||+||++|+..|..+|++.|||+..+++   |++
T Consensus         5 ~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---Gks   81 (523)
T KOG2016|consen    5 EPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKS   81 (523)
T ss_pred             chhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (288)
Q Consensus        89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v  165 (288)
                      ||++..+.|+++||+|......+..+.   .+++|+++|++||.+..+.+...++.++||+  .++|++.+.++|+.|++
T Consensus        82 rA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~--~~vpll~~rs~Gl~G~i  159 (523)
T KOG2016|consen   82 RAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILRE--ANVPLLLTRSYGLAGTI  159 (523)
T ss_pred             HHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHh--cCCceEEEeeecceEEE
Confidence            999999999999999998887776543   5689999999999999999999999999999  99999999999999999


Q ss_pred             EEEcCCeeeecCCCCcc-ceeee--cCCChhhhh-cCCCcCCC----CCchhHHHHHHHHHHHHHHhC-CCCCCCCcchH
Q 023036          166 FVDLQNHKYSKQKIEET-IECQL--RYPSFEEAI-SVPWRALP----RKASKLYFALRVLEQFEEAEG-RSPGEISIADL  236 (288)
Q Consensus       166 ~~d~~~~~~~~~~~~~~-~~~~~--~f~~l~~~~-~~~~~~~~----~~~~~~~~~~~aL~~f~~~~~-~~P~~~~~~d~  236 (288)
                      ++...+|++++++|+.+ .+.++  |||.|.+++ +.+.+.|+    +|+|++.+++++|.+|+++|+ +.|.  +.++.
T Consensus       160 RI~ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~--t~~ek  237 (523)
T KOG2016|consen  160 RISIKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPS--TYDEK  237 (523)
T ss_pred             EEEeeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCc--cHHHH
Confidence            99999999999998765 44554  999999988 56777664    689999999999999999995 4774  67899


Q ss_pred             HHHHHHHHH
Q 023036          237 PAVLKLKKE  245 (288)
Q Consensus       237 ~~~~~~~~~  245 (288)
                      ++|++++++
T Consensus       238 k~fkd~i~~  246 (523)
T KOG2016|consen  238 KEFKDLIRS  246 (523)
T ss_pred             HHHHHHHHh
Confidence            999988875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1e-42  Score=300.73  Aligned_cols=152  Identities=34%  Similarity=0.595  Sum_probs=144.4

Q ss_pred             hhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCC--CccccCCCcHH
Q 023036           13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP--DENVYGGKTIA   90 (288)
Q Consensus        13 rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~--~di~~~G~~Ka   90 (288)
                      +||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|++||||+++  +|+   |++|+
T Consensus         1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka   77 (198)
T cd01485           1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA   77 (198)
T ss_pred             CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999998  888   99999


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCC---CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      ++++++|+++||+++++.+...+.   +..++++++||+||+|.++.+.+..++++|++  +++|||.+++.|++|++|+
T Consensus        78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~  155 (198)
T cd01485          78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRK--HHIPFISCATYGLIGYAFF  155 (198)
T ss_pred             HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence            999999999999999999887764   34578899999999999999999999999999  9999999999999999996


Q ss_pred             Ec
Q 023036          168 DL  169 (288)
Q Consensus       168 d~  169 (288)
                      |+
T Consensus       156 ~~  157 (198)
T cd01485         156 DF  157 (198)
T ss_pred             ch
Confidence            64

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=2.5e-39  Score=288.20  Aligned_cols=159  Identities=24%  Similarity=0.332  Sum_probs=151.4

Q ss_pred             CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++++|+
T Consensus         4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv   83 (245)
T PRK05690          4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI   83 (245)
T ss_pred             CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence            6999999999999988  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++|+++++++|+++||+++++.+...+++. ..+++++||+||+|+|+.+.+..++++|++  +++|||.+++.|+
T Consensus        84 ---G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~  158 (245)
T PRK05690         84 ---GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFA--AKKPLVSGAAIRM  158 (245)
T ss_pred             ---CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHH--hCCEEEEeeeccC
Confidence               9999999999999999999999998887653 367899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEE
Q 023036          162 CGEIFVD  168 (288)
Q Consensus       162 ~G~v~~d  168 (288)
                      .|++.+-
T Consensus       159 ~G~v~~~  165 (245)
T PRK05690        159 EGQVTVF  165 (245)
T ss_pred             CceEEEE
Confidence            9998754

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=5.9e-39  Score=288.68  Aligned_cols=156  Identities=18%  Similarity=0.232  Sum_probs=147.4

Q ss_pred             HHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcH
Q 023036           10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (288)
Q Consensus        10 e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K   89 (288)
                      -.++|+||+.++|.++|+||++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++.+|+   |++|
T Consensus         6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~K   82 (287)
T PRK08223          6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRPK   82 (287)
T ss_pred             HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCcH
Confidence            3589999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCCh--hhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036           90 AEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus        90 a~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~--~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      +++++++|+++||+++|+++...+++. ..++++++|+||++.|++  +++..+|+.|++  +++|+|++++.|+.|++.
T Consensus        83 ve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g~~gqv~  160 (287)
T PRK08223         83 AEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLGMGTALL  160 (287)
T ss_pred             HHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccCCeEEEE
Confidence            999999999999999999999888753 478899999999999985  899999999999  999999999999999987


Q ss_pred             EEcC
Q 023036          167 VDLQ  170 (288)
Q Consensus       167 ~d~~  170 (288)
                      +-.+
T Consensus       161 v~~p  164 (287)
T PRK08223        161 VFDP  164 (287)
T ss_pred             EEcC
Confidence            6553

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=279.43  Aligned_cols=160  Identities=24%  Similarity=0.351  Sum_probs=150.7

Q ss_pred             CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (288)
Q Consensus         6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~   85 (288)
                      ||+.|.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||++.++|+   
T Consensus         2 l~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---   78 (231)
T PRK08328          2 LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---   78 (231)
T ss_pred             CCHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CC-cHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036           86 GK-TIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus        86 G~-~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      |+ +|+++++++|+++||+++|+.+...+.+. ..++++++|+||+|.|+.+++..++++|++  +++|+|.+++.|++|
T Consensus        79 G~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~--~~ip~i~g~~~g~~G  156 (231)
T PRK08328         79 GKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHK--KGIPLVHGAVEGTYG  156 (231)
T ss_pred             CchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeeccCEE
Confidence            99 59999999999999999999988777543 356889999999999999999999999999  999999999999999


Q ss_pred             EEEEEcC
Q 023036          164 EIFVDLQ  170 (288)
Q Consensus       164 ~v~~d~~  170 (288)
                      ++++-.+
T Consensus       157 ~v~~~~p  163 (231)
T PRK08328        157 QVTTIVP  163 (231)
T ss_pred             EEEEECC
Confidence            9986554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=2.1e-38  Score=274.73  Aligned_cols=152  Identities=24%  Similarity=0.366  Sum_probs=144.6

Q ss_pred             hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (288)
Q Consensus        13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka   90 (288)
                      |||||+++  ||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++|||+++++|+   |++|+
T Consensus         1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka   77 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV   77 (202)
T ss_pred             CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence            79999999  99999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~  169 (288)
                      ++++++|+++||+++++.+...+++. ..++++++|+||+|.|+.+.+..++++|++  +++|||.+++.|+.|++++-.
T Consensus        78 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~--~~ip~i~~~~~g~~G~~~~~~  155 (202)
T TIGR02356        78 EVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVA--LGTPLISAAVVGFGGQLMVFD  155 (202)
T ss_pred             HHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccCeEEEEEEe
Confidence            99999999999999999998877653 356889999999999999999999999999  999999999999999998544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=2.3e-37  Score=279.95  Aligned_cols=225  Identities=19%  Similarity=0.225  Sum_probs=180.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      ||+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+   |++||++++++|+++||+++++++...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~   77 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK   77 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999999


Q ss_pred             CCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc------CCCceEEEEeeecceEEEEEEcCCee-----eecCCCC-
Q 023036          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL------SKRVAFYTVDCRDSCGEIFVDLQNHK-----YSKQKIE-  180 (288)
Q Consensus       113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~------~~~ip~i~~~~~G~~G~v~~d~~~~~-----~~~~~~~-  180 (288)
                      +.+.+.+|+++||+||++.|+.++|..+|+.|.+.      ..++|+|.+++.|+.|++++..++.+     ..+..++ 
T Consensus        78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~  157 (291)
T cd01488          78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ  157 (291)
T ss_pred             cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence            88878899999999999999999999999987552      13599999999999999999887532     2232222 


Q ss_pred             -ccceeee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHh-CCCCCCCCcchHHHHHHHHHHHHHhcCCCc---
Q 023036          181 -ETIECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAE-GRSPGEISIADLPAVLKLKKELCEANVRNF---  254 (288)
Q Consensus       181 -~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~-~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~---  254 (288)
                       ..+.|++ +||+..+ +++.|++.-              .|.+.+ +......+.++.+++++.+++.+++++++-   
T Consensus       158 ~~~p~Cti~~~P~~~~-hci~~a~~~--------------~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~  222 (291)
T cd01488         158 VTFPLCTIANTPRLPE-HCIEYASLI--------------QWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTY  222 (291)
T ss_pred             CCCCcccccCCCCCcc-hheeeeeee--------------ecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence             2334555 7777766 777887642              333332 222233455667778888888888776322   


Q ss_pred             -----------------chhhhhhhHHHHHHHhhcccc
Q 023036          255 -----------------KLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       255 -----------------~~~~g~~~~~~~i~~~~~~~~  275 (288)
                                       .++++++++.|++|.++++..
T Consensus       223 ~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~  260 (291)
T cd01488         223 SLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYE  260 (291)
T ss_pred             HHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhcccc
Confidence                             455788888888888887654

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=8.5e-38  Score=295.37  Aligned_cols=161  Identities=22%  Similarity=0.270  Sum_probs=153.6

Q ss_pred             CCCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc
Q 023036            4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d   81 (288)
                      -+||+.|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|
T Consensus         9 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~d   88 (390)
T PRK07411          9 IQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSW   88 (390)
T ss_pred             ccCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHH
Confidence            45899999999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        82 i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +   |++||++++++|+++||.++|+++...++. ...++++++|+||+|+|+.+++..+|++|++  .++|+|++++.|
T Consensus        89 v---G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g  163 (390)
T PRK07411         89 V---GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVL--LNKPNVYGSIFR  163 (390)
T ss_pred             C---CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEcc
Confidence            9   999999999999999999999999988875 3467899999999999999999999999999  999999999999


Q ss_pred             ceEEEEEEc
Q 023036          161 SCGEIFVDL  169 (288)
Q Consensus       161 ~~G~v~~d~  169 (288)
                      ++|++.+..
T Consensus       164 ~~g~~~v~~  172 (390)
T PRK07411        164 FEGQATVFN  172 (390)
T ss_pred             CEEEEEEEC
Confidence            999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=6.4e-38  Score=276.60  Aligned_cols=153  Identities=27%  Similarity=0.388  Sum_probs=144.5

Q ss_pred             hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (288)
Q Consensus        13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka   90 (288)
                      |||||+++  ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++|++||||+.++|+   |++|+
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka   77 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA   77 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence            79999999  99999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~  169 (288)
                      ++++++|+++||+++++.+...++. ...++++++|+||+|.|+.+.+..++++|++  +++|+|.+++.|+.|++....
T Consensus        78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~ip~i~~g~~g~~g~v~~~~  155 (228)
T cd00757          78 EAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVK--LGKPLVSGAVLGFEGQVTVFI  155 (228)
T ss_pred             HHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEeccCEEEEEEEC
Confidence            9999999999999999999887753 3467889999999999999999999999999  999999999999999987554


Q ss_pred             C
Q 023036          170 Q  170 (288)
Q Consensus       170 ~  170 (288)
                      +
T Consensus       156 p  156 (228)
T cd00757         156 P  156 (228)
T ss_pred             C
Confidence            4

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=1.3e-37  Score=294.54  Aligned_cols=159  Identities=25%  Similarity=0.363  Sum_probs=151.9

Q ss_pred             CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus        14 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di   93 (392)
T PRK07878         14 ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV   93 (392)
T ss_pred             CCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC
Confidence            5999999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++||++++++|+++||+++|+++...++.. ..+++++||+||+|+|+...+..+|++|++  +++|||.+++.|+
T Consensus        94 ---G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g~  168 (392)
T PRK07878         94 ---GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVL--AGKPYVWGSIYRF  168 (392)
T ss_pred             ---CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence               9999999999999999999999998887653 467899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEE
Q 023036          162 CGEIFVD  168 (288)
Q Consensus       162 ~G~v~~d  168 (288)
                      +|++++.
T Consensus       169 ~G~v~~~  175 (392)
T PRK07878        169 EGQASVF  175 (392)
T ss_pred             EEEEEEE
Confidence            9998844

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=2.7e-37  Score=288.80  Aligned_cols=159  Identities=21%  Similarity=0.216  Sum_probs=150.6

Q ss_pred             CHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcccc
Q 023036            7 TEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (288)
Q Consensus         7 ~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~   84 (288)
                      ..+|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+  
T Consensus         2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di--   79 (355)
T PRK05597          2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV--   79 (355)
T ss_pred             ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC--
Confidence            45788999999999  99999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus        85 ~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                       |++|+++++++|+++||+++++++...++. ...++++++|+||+|+|+.+.+..+|++|++  +++|||.+++.|+.|
T Consensus        80 -G~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~--~~ip~v~~~~~g~~g  156 (355)
T PRK05597         80 -GQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAAR--LGIPHVWASILGFDA  156 (355)
T ss_pred             -CChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecCeE
Confidence             999999999999999999999999887764 3467899999999999999999999999999  999999999999999


Q ss_pred             EEEEEcC
Q 023036          164 EIFVDLQ  170 (288)
Q Consensus       164 ~v~~d~~  170 (288)
                      ++.+..+
T Consensus       157 ~v~~~~~  163 (355)
T PRK05597        157 QLSVFHA  163 (355)
T ss_pred             EEEEEcC
Confidence            9987653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=2.2e-37  Score=290.19  Aligned_cols=160  Identities=26%  Similarity=0.352  Sum_probs=152.3

Q ss_pred             CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus        13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di   92 (370)
T PRK05600         13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV   92 (370)
T ss_pred             CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence            4889999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++||++++++|+++||+++++++...+++ ...++++++|+||+|+|+.+++..+|++|++  +++|+|++++.|+
T Consensus        93 ---G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~--~~iP~v~~~~~g~  167 (370)
T PRK05600         93 ---GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRF  167 (370)
T ss_pred             ---CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecC
Confidence               999999999999999999999999988875 3467899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEEc
Q 023036          162 CGEIFVDL  169 (288)
Q Consensus       162 ~G~v~~d~  169 (288)
                      .|++.+..
T Consensus       168 ~G~v~v~~  175 (370)
T PRK05600        168 HGELAVFN  175 (370)
T ss_pred             EEEEEEEe
Confidence            99986543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=3.1e-37  Score=273.81  Aligned_cols=151  Identities=25%  Similarity=0.352  Sum_probs=143.2

Q ss_pred             HHhhhhhhhhcc--HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036           11 TALYDRQIRVWG--ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (288)
Q Consensus        11 ~~rYdRqirl~G--~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~   88 (288)
                      .+||+||+++||  .++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+   |++
T Consensus         2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~   78 (240)
T TIGR02355         2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQP   78 (240)
T ss_pred             ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCc
Confidence            579999999975  799999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus        89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ||++++++|+++||+++++.+...+++ ...++++++|+||+|.|+.+.+..+|++|++  +++|||.+++.|+.|++.
T Consensus        79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~~G~v~  155 (240)
T TIGR02355        79 KVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFA--AKVPLVSGAAIRMEGQVS  155 (240)
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEeEEE
Confidence            999999999999999999999888765 3467899999999999999999999999999  999999999999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=6.5e-36  Score=263.58  Aligned_cols=214  Identities=15%  Similarity=0.211  Sum_probs=170.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      ||+|+|+||+|+|++|+|+++|+|+|+|+|+|.|+.+||+||||++++|+   |++||++++++++++||+++++.+...
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999888


Q ss_pred             CC---CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCCe--eeecC---CCCccce
Q 023036          113 LS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH--KYSKQ---KIEETIE  184 (288)
Q Consensus       113 ~~---~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~~--~~~~~---~~~~~~~  184 (288)
                      +.   +.+++|+++||+||+|.|+.++|..+|++|++  .++|+|.+++.|+.|++++-.+..  +|...   .++..+.
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~  155 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPM  155 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCc
Confidence            74   34578999999999999999999999999999  999999999999999999888742  22211   1111222


Q ss_pred             eee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHhcCCCc---chh---
Q 023036          185 CQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANVRNF---KLV---  257 (288)
Q Consensus       185 ~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~---  257 (288)
                      |++ +||+..                .|....|...|+         .+....+.+.+.++..++.++++.   ..+   
T Consensus       156 Cti~~~P~~~----------------~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i  210 (234)
T cd01484         156 CTIASMPRLP----------------EHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGV  210 (234)
T ss_pred             cccCCCCCCc----------------hHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence            333 344333                333333333433         244677888888988888887543   233   


Q ss_pred             hh----hhhHHHHHHHhhccccc
Q 023036          258 FV----CIIGCLVIKLQSCCTLL  276 (288)
Q Consensus       258 ~g----~~~~~~~i~~~~~~~~~  276 (288)
                      .|    .+.++.||.|-.++.|+
T Consensus       211 ~~~iipai~tTnaiia~~~~~e~  233 (234)
T cd01484         211 AGRIIPAVATTNAVVAGVCALEV  233 (234)
T ss_pred             hcCeecchhhHHHHHHHHHHHhh
Confidence            22    27889999988888775

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=1.7e-35  Score=270.40  Aligned_cols=240  Identities=20%  Similarity=0.302  Sum_probs=180.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|+|||+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++++|+   |++||++++++++++||+++|+++...
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~   77 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN   77 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999888


Q ss_pred             CCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC-eeeecCC-CC---cccee
Q 023036          113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN-HKYSKQK-IE---ETIEC  185 (288)
Q Consensus       113 ~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~-~~~~~~~-~~---~~~~~  185 (288)
                      +.+  .+.+++++||+||.|.|+.+.+..+|++|+.  +++|||.+++.|+.|++++++|+ +.+.+.. ++   +.+.|
T Consensus        78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic  155 (312)
T cd01489          78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC  155 (312)
T ss_pred             CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence            765  3568999999999999999999999999999  99999999999999999999986 4455422 21   22334


Q ss_pred             ee-cCCChhhhhcCCCcCCC-----CC-chhHHHHHHHHHHHHHHhCCCCCC-------C---CcchHHHHHHHHHHHHH
Q 023036          186 QL-RYPSFEEAISVPWRALP-----RK-ASKLYFALRVLEQFEEAEGRSPGE-------I---SIADLPAVLKLKKELCE  248 (288)
Q Consensus       186 ~~-~f~~l~~~~~~~~~~~~-----~~-~~~~~~~~~aL~~f~~~~~~~P~~-------~---~~~d~~~~~~~~~~~~~  248 (288)
                      ++ ++|+..+ +++.|++..     +. ...+.-+......|+.  .+.|.|       .   +....+.+.+.++..++
T Consensus       156 tI~~~p~~~~-hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~--~~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~  232 (312)
T cd01489         156 TIRSTPSQPI-HCIVWAKSLFFLFNKVFKDDIERLLSMEELWKT--RKPPVPLSWKELTFDKDDQDALDFVAAAANLRSH  232 (312)
T ss_pred             eecCCCCCCE-eehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--CCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHH
Confidence            44 5555433 566676520     00 0001111111112222  223322       1   22235566777777777


Q ss_pred             hcCCCc--------------------chhhhhhhHHHHHHHhhcccccchhccccC
Q 023036          249 ANVRNF--------------------KLVFVCIIGCLVIKLQSCCTLLSLFQCRHS  284 (288)
Q Consensus       249 ~~~~~~--------------------~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~  284 (288)
                      .++++.                    .+++.|++..|++|.++++.+    .||++
T Consensus       233 ~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~----~~~~~  284 (312)
T cd01489         233 VFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKE----QCRTV  284 (312)
T ss_pred             HcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHH----HhhhH
Confidence            776443                    445888999999999998743    45654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=4.1e-36  Score=309.33  Aligned_cols=186  Identities=24%  Similarity=0.436  Sum_probs=162.5

Q ss_pred             HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEcCCcCCcccccccccCCCCccccC
Q 023036           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~~~~~di~~~   85 (288)
                      .+|||||+++||.++|++|++++|+|||+||+|||++|||+++||     |+|+|+|.|.|+.+||+||||++.+||   
T Consensus       399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---  475 (1008)
T TIGR01408       399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---  475 (1008)
T ss_pred             hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---
Confidence            589999999999999999999999999999999999999999999     899999999999999999999999999   


Q ss_pred             CCcHHHHHHHHHhhhCCCceeeeeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      |++||++++++++++||+++++++...+..     .+++|++++|+||+|.|+.++|..+++.|+.  +++|+|.+++.|
T Consensus       476 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~--~~iPli~~gt~G  553 (1008)
T TIGR01408       476 GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLA--FLKPLLESGTLG  553 (1008)
T ss_pred             CcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence            999999999999999999999999887743     2367899999999999999999999999999  999999999999


Q ss_pred             ceEEEEEEcCCee-eecCCCC----ccceeee-cCCChhhhhcCCCcC
Q 023036          161 SCGEIFVDLQNHK-YSKQKIE----ETIECQL-RYPSFEEAISVPWRA  202 (288)
Q Consensus       161 ~~G~v~~d~~~~~-~~~~~~~----~~~~~~~-~f~~l~~~~~~~~~~  202 (288)
                      +.|++++..+..+ ......+    ..+.|++ +||+..+ +++.|++
T Consensus       554 ~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~-h~i~wa~  600 (1008)
T TIGR01408       554 TKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIE-HTIQWAR  600 (1008)
T ss_pred             ceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCch-HHHHHHH
Confidence            9999999988632 3322221    2233454 6666544 5566654

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=268.78  Aligned_cols=156  Identities=23%  Similarity=0.328  Sum_probs=144.8

Q ss_pred             Hhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcH
Q 023036           12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (288)
Q Consensus        12 ~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K   89 (288)
                      +||+||+++  ||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+ ..|++|
T Consensus         3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~K   81 (338)
T PRK12475          3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKPK   81 (338)
T ss_pred             chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCccH
Confidence            699999998  89999999999999999999999999999999999999999999999999999999999997 124899


Q ss_pred             HHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEE
Q 023036           90 AEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD  168 (288)
Q Consensus        90 a~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d  168 (288)
                      |++++++|+++||+++++++..+++. ...++++++|+||+|+|+.+++..+|++|++  .++|+|.+++.|++|++++.
T Consensus        82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~--~~ip~i~~~~~g~~G~~~~~  159 (338)
T PRK12475         82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK--YNIPWIYGGCVGSYGVTYTI  159 (338)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEEE
Confidence            99999999999999999999877753 3467889999999999999999999999999  99999999999999998765


Q ss_pred             cC
Q 023036          169 LQ  170 (288)
Q Consensus       169 ~~  170 (288)
                      .+
T Consensus       160 ~P  161 (338)
T PRK12475        160 IP  161 (338)
T ss_pred             CC
Confidence            54

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=2.2e-34  Score=267.26  Aligned_cols=154  Identities=21%  Similarity=0.296  Sum_probs=144.7

Q ss_pred             Hhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC--
Q 023036           12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--   87 (288)
Q Consensus        12 ~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~--   87 (288)
                      +||+||+++  ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+   |+  
T Consensus         3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di---g~g~   79 (339)
T PRK07688          3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV---KNNL   79 (339)
T ss_pred             chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh---cCCC
Confidence            699999998  99999999999999999999999999999999999999999999999999999999999998   65  


Q ss_pred             cHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036           88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus        88 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      +|+++++++|+++||+++++.+..+++.. ..++++++|+||+|+|+++.+..+|++|++  .++|+|++++.|++|+++
T Consensus        80 ~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~--~~iP~i~~~~~g~~G~~~  157 (339)
T PRK07688         80 PKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK--YGIPWIYGACVGSYGLSY  157 (339)
T ss_pred             cHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeeeeeeeEEE
Confidence            99999999999999999999998877653 367889999999999999999999999999  999999999999999987


Q ss_pred             EEcC
Q 023036          167 VDLQ  170 (288)
Q Consensus       167 ~d~~  170 (288)
                      +..+
T Consensus       158 ~~~p  161 (339)
T PRK07688        158 TIIP  161 (339)
T ss_pred             EECC
Confidence            6543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=100.00  E-value=3.6e-34  Score=256.51  Aligned_cols=151  Identities=22%  Similarity=0.337  Sum_probs=138.6

Q ss_pred             CCCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcccc
Q 023036            5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~   84 (288)
                      .||+++.+||+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+++  
T Consensus         4 ~~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v--   81 (268)
T PRK15116          4 VISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV--   81 (268)
T ss_pred             CCCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc--
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999989999  


Q ss_pred             CCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        85 ~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                       |++|++++++++.++||+++|+.+...+.. ...+++ .+||+||+|.|+...+..++++|++  +++|+|.++..|
T Consensus        82 -G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag  156 (268)
T PRK15116         82 -GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG  156 (268)
T ss_pred             -ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc
Confidence             999999999999999999999988766553 234455 4799999999999999999999999  999999775443

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=6.9e-34  Score=254.72  Aligned_cols=162  Identities=31%  Similarity=0.438  Sum_probs=153.1

Q ss_pred             CCCHHHHHhhhhhhhhccH--HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRVWGA--DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl~G~--~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      .+++.+.+||+||+++|+.  ++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||.||++++++|+
T Consensus         2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di   81 (254)
T COG0476           2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV   81 (254)
T ss_pred             CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence            4789999999999999664  45999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++|++++++.++++||.+.++.+...+...+ .++++++|+|++|+|+.+++..+|++|++  .++|++++++.|+
T Consensus        82 ---g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~--~~~pli~~~~~~~  156 (254)
T COG0476          82 ---GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVK--LGIPLVHGGAIGF  156 (254)
T ss_pred             ---CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHH--hCCCeEeeeeccc
Confidence               99999999999999999999999998876544 68899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEEcCC
Q 023036          162 CGEIFVDLQN  171 (288)
Q Consensus       162 ~G~v~~d~~~  171 (288)
                      .|++++..+.
T Consensus       157 ~g~~~~~~~~  166 (254)
T COG0476         157 EGQVTVIIPG  166 (254)
T ss_pred             eEEEEEEecC
Confidence            9999988875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=1.3e-33  Score=266.20  Aligned_cols=161  Identities=25%  Similarity=0.348  Sum_probs=151.0

Q ss_pred             CCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      .++.++.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++++++|+
T Consensus       107 ~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di  186 (376)
T PRK08762        107 LLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV  186 (376)
T ss_pred             CCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC
Confidence            4788899999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++|+++++++|+++||.++++.+...+++. ..++++++|+||+|+|+.+.+..+|++|++  +++|||.+++.|+
T Consensus       187 ---G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~g~  261 (376)
T PRK08762        187 ---GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK--LGKPLVYGAVFRF  261 (376)
T ss_pred             ---CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence               9999999999999999999999988777643 356789999999999999999999999999  9999999999999


Q ss_pred             eEEEEEEcC
Q 023036          162 CGEIFVDLQ  170 (288)
Q Consensus       162 ~G~v~~d~~  170 (288)
                      .|++.+..+
T Consensus       262 ~g~v~~~~p  270 (376)
T PRK08762        262 EGQVSVFDA  270 (376)
T ss_pred             EEEEEEEeC
Confidence            999885443

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=100.00  E-value=3.2e-34  Score=250.00  Aligned_cols=124  Identities=30%  Similarity=0.483  Sum_probs=114.0

Q ss_pred             CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (288)
Q Consensus         6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~   85 (288)
                      ++++|.+||||||++||.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ ++   
T Consensus         1 ms~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---   76 (287)
T PTZ00245          1 MRDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---   76 (287)
T ss_pred             CCHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999997 57   


Q ss_pred             CCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHH
Q 023036           86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKK  138 (288)
Q Consensus        86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~  138 (288)
                      |++|+++++++|+++||+|+|+.+...++.     -++|++||.+..+.+...
T Consensus        77 Gk~KAeaAa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~av  124 (287)
T PTZ00245         77 GGTRGARALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEEDAV  124 (287)
T ss_pred             CCcHHHHHHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHHHH
Confidence            999999999999999999999998876644     348999999987766533

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=6.1e-33  Score=276.42  Aligned_cols=159  Identities=18%  Similarity=0.238  Sum_probs=149.7

Q ss_pred             CHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCC
Q 023036            7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (288)
Q Consensus         7 ~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G   86 (288)
                      .+.+.++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+   |
T Consensus        19 ~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G   95 (679)
T PRK14851         19 AEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---G   95 (679)
T ss_pred             HHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---C
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             CcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus        87 ~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      ++|+++++++|+++||.++|+++...+++.+ .++++++|+||+|.|+  .+.+..+++.|++  ++||+|.+++.|+.|
T Consensus        96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~G~~g  173 (679)
T PRK14851         96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPLGYSS  173 (679)
T ss_pred             CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecccccc
Confidence            9999999999999999999999999887644 7889999999999996  4678899999999  999999999999999


Q ss_pred             EEEEEcC
Q 023036          164 EIFVDLQ  170 (288)
Q Consensus       164 ~v~~d~~  170 (288)
                      ++++..+
T Consensus       174 ~~~~~~p  180 (679)
T PRK14851        174 AMLVFTP  180 (679)
T ss_pred             eEEEEcC
Confidence            9888765

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-32  Score=243.30  Aligned_cols=243  Identities=18%  Similarity=0.214  Sum_probs=194.8

Q ss_pred             cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        22 G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      +.|..+-+.+.+|||||+||+|||++|||+++|++.++++|.|+++.+||+|||+|++.|+   |++||+++++.+++..
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rv  107 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRV  107 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhC
Confidence            6788899999999999999999999999999999999999999999999999999999999   9999999999999999


Q ss_pred             CCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC--------ceEEEEeeecceEEEEEEcCCe-
Q 023036          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--------VAFYTVDCRDSCGEIFVDLQNH-  172 (288)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~--------ip~i~~~~~G~~G~v~~d~~~~-  172 (288)
                      |...|..+..++++...+|+++|++||+..|+.+.|++||....++...        ||+|++++.|+.|.+++-.+++ 
T Consensus       108 p~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~T  187 (422)
T KOG2015|consen  108 PGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGIT  187 (422)
T ss_pred             CCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCcc
Confidence            9999999999999999999999999999999999999999976543322        7999999999999999999986 


Q ss_pred             eeecCCCCccceeee-cCCChhhhhcCCCcCCCCCchhHHHHHHHHHHHHHHhC-CCC-CCCCcchHHHHHHHHHHHHHh
Q 023036          173 KYSKQKIEETIECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEG-RSP-GEISIADLPAVLKLKKELCEA  249 (288)
Q Consensus       173 ~~~~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~~~~~~~aL~~f~~~~~-~~P-~~~~~~d~~~~~~~~~~~~~~  249 (288)
                      .+.+        |++ .||+-..+=-+..+++ .|.|.-.+-+..+.+|.+.+- ..| ...+.++.+++.+-+.+.+.+
T Consensus       188 aCie--------Ctldlyppqvs~P~CTiAnt-PRlpEHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA~e  258 (422)
T KOG2015|consen  188 ACIE--------CTLDLYPPQVSYPMCTIANT-PRLPEHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERANE  258 (422)
T ss_pred             HHHH--------hHHhhcCcccCcccceecCC-CCCchHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHhhh
Confidence            3333        111 3433222111123333 234444444555667776652 233 344567788888888888777


Q ss_pred             c---CCCcchhhhh-------hhHHHHHHHhhccccc
Q 023036          250 N---VRNFKLVFVC-------IIGCLVIKLQSCCTLL  276 (288)
Q Consensus       250 ~---~~~~~~~~g~-------~~~~~~i~~~~~~~~~  276 (288)
                      +   |++..++.|.       ..+++|+.|.+|++|+
T Consensus       259 f~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea  295 (422)
T KOG2015|consen  259 FNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEA  295 (422)
T ss_pred             cccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHH
Confidence            5   4566777776       5789999999999886

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=2e-32  Score=276.99  Aligned_cols=155  Identities=14%  Similarity=0.199  Sum_probs=145.5

Q ss_pred             HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka   90 (288)
                      ..+|+||+++||.++|+||++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++.+|+   |++|+
T Consensus       312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI---G~~Ka  388 (989)
T PRK14852        312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF---GRGKL  388 (989)
T ss_pred             HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC---CChHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCCh--hhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~--~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      ++++++|+++||+++|+++...+++ +.++|++++|+||+|.|+.  +.+..+++.|++  ++||+|.+++.|+.|++++
T Consensus       389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~~G~~g~v~v  466 (989)
T PRK14852        389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGPLGYSCALLV  466 (989)
T ss_pred             HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeeccccCeeEEE
Confidence            9999999999999999999888754 4578999999999999974  567788999999  9999999999999999987


Q ss_pred             EcC
Q 023036          168 DLQ  170 (288)
Q Consensus       168 d~~  170 (288)
                      ..+
T Consensus       467 ~~p  469 (989)
T PRK14852        467 FMP  469 (989)
T ss_pred             EcC
Confidence            764

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.98  E-value=2.4e-31  Score=251.75  Aligned_cols=164  Identities=23%  Similarity=0.434  Sum_probs=140.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-----CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +|+|||+||+|||++|||+++||     |+|+|+|+|.|+.+||+|||+++++||   |++||+++++.++++||+++|+
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence            69999999999999999999999     999999999999999999999999999   9999999999999999999999


Q ss_pred             eeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCCe--eeecC--C
Q 023036          108 VEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH--KYSKQ--K  178 (288)
Q Consensus       108 ~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~~--~~~~~--~  178 (288)
                      ++...+.+     .+++|++++|+||.|.|+.++|..+++.|+.  .++|+|.+++.|+.|++.+-.+..  +|...  .
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~--~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p  155 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVY--YRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDP  155 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEecccceeEEEEEeCCCCCCccCCCCC
Confidence            99887753     2468899999999999999999999999999  999999999999999999998742  23221  1


Q ss_pred             -CCccceeee-cCCChhhhhcCCCcC
Q 023036          179 -IEETIECQL-RYPSFEEAISVPWRA  202 (288)
Q Consensus       179 -~~~~~~~~~-~f~~l~~~~~~~~~~  202 (288)
                       .+..+.|++ +||+..+ +++.|++
T Consensus       156 ~~~~~P~Ctl~~~P~~~e-HcI~wA~  180 (435)
T cd01490         156 PEKSIPLCTLKNFPNAIE-HTIQWAR  180 (435)
T ss_pred             CCCCCCCccccCCCCCch-HHHHHHH
Confidence             122334555 6666655 4555543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.98  E-value=8.1e-32  Score=219.05  Aligned_cols=133  Identities=27%  Similarity=0.484  Sum_probs=122.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      |++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+   |++|+++++++|+++||+++++++
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~   77 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI   77 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence            57899999999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             ecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036          110 KGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus       110 ~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      +..+++ ...++++++|+||+|.++.+.+..++++|++  +++|||.+++.|+.|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICRE--YGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHH--TT-EEEEEEEETTEEEEEE
T ss_pred             ecccccccccccccCCCEEEEecCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence            998853 4577889999999999999999999999999  9999999999999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.97  E-value=3.4e-32  Score=244.28  Aligned_cols=207  Identities=23%  Similarity=0.256  Sum_probs=175.3

Q ss_pred             CCCCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc
Q 023036            4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d   81 (288)
                      ..|+.+|..||+||+.+  +|..||.+|++++|||||+||+||..+..|+.+|||+|-|+|.|.|+.+|+.||.+.+++.
T Consensus        37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~  116 (427)
T KOG2017|consen   37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR  116 (427)
T ss_pred             cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence            35999999999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        82 i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +   |+.||++++..++++||.++|+.+.+.+.. +..+.+++||+|++|+||..+|+.|++.|..  .++|++.+.+.+
T Consensus       117 v---g~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVl--LgkpLVSgSaLr  191 (427)
T KOG2017|consen  117 V---GMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVL--LGKPLVSGSALR  191 (427)
T ss_pred             h---hhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHH--cCCccccccccc
Confidence            9   999999999999999999999999998875 4578899999999999999999999999988  999999999999


Q ss_pred             ceEEEEEEcCCeeeecCCCCccceeeecCCChhh--hh-cCCCcCCCCCchhHHHHHHHHHHHHHHh
Q 023036          161 SCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEE--AI-SVPWRALPRKASKLYFALRVLEQFEEAE  224 (288)
Q Consensus       161 ~~G~v~~d~~~~~~~~~~~~~~~~~~~~f~~l~~--~~-~~~~~~~~~~~~~~~~~~~aL~~f~~~~  224 (288)
                      +-|+.-+    |.|-  .   -+..++-||....  .. ++.-..+-.-+..++-+++||+.-+-.-
T Consensus       192 ~EGQLtv----Yny~--~---GPCYRClFP~Ppp~~~vt~C~dgGVlGpv~GviG~mQALE~iKli~  249 (427)
T KOG2017|consen  192 WEGQLTV----YNYN--N---GPCYRCLFPNPPPPEAVTNCADGGVLGPVTGVIGCMQALETIKLIA  249 (427)
T ss_pred             ccceeEE----eecC--C---CceeeecCCCCcChHHhcccccCceeecchhhhhHHHHHHHHHHHH
Confidence            9998632    2221  1   1233565555443  22 3333333344566778888887766543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.97  E-value=7e-31  Score=229.07  Aligned_cols=148  Identities=18%  Similarity=0.258  Sum_probs=135.0

Q ss_pred             HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka   90 (288)
                      .+.|.++.+.||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+|++||+++ ++|+   |++|+
T Consensus         8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka   83 (212)
T PRK08644          8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKV   83 (212)
T ss_pred             HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHH
Confidence            4677778888999999999999999999999999999999999999999999999999999999876 6788   99999


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCC-CceEEEEeeecceEE
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGE  164 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~-~ip~i~~~~~G~~G~  164 (288)
                      ++++++|+++||+++++.+...+++.+ .++++++|+||.|.|+.+.+..+++.|++  + ++|+|.+...|.+|+
T Consensus        84 ~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~--~~~~p~I~~~~~~~~~~  157 (212)
T PRK08644         84 EALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE--HPGKKLVAASGMAGYGD  157 (212)
T ss_pred             HHHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH--hCCCCEEEeehhhccCC
Confidence            999999999999999999988876543 47889999999999999999999999998  8 999999866555554

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=1.9e-30  Score=212.85  Aligned_cols=132  Identities=26%  Similarity=0.391  Sum_probs=125.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||||++.+|+   |++|+++++++++++||+++++.+...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~   77 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG   77 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999887


Q ss_pred             CCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEc
Q 023036          113 LSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (288)
Q Consensus       113 ~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~  169 (288)
                      +.+. ..++++++|+||+|.++.+.+..++++|++  +++|||.+++.|+.|+++++.
T Consensus        78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~--~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCCcEEEEEEEE
Confidence            7643 367889999999999999999999999999  999999999999999999775

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.97  E-value=2.4e-30  Score=227.99  Aligned_cols=136  Identities=24%  Similarity=0.345  Sum_probs=125.9

Q ss_pred             ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      +|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++..+|+   |++|+++++++|+++
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~i   77 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDI   77 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCceeeeeecCCCC-cchhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          101 NPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       101 Np~v~v~~~~~~~~~-~~~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ||+++++.+...+.+ ...+++ ++||+||+|.|+.+.+..++++|++  +++|+|.+...|.
T Consensus        78 nP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~  138 (231)
T cd00755          78 NPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGG  138 (231)
T ss_pred             CCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcC
Confidence            999999999887764 334454 4799999999999999999999999  9999998866664

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07877 hypothetical protein; Provisional

Probab=99.96  E-value=1.3e-29  Score=253.39  Aligned_cols=151  Identities=25%  Similarity=0.319  Sum_probs=140.3

Q ss_pred             CCHHHH--HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCcc
Q 023036            6 LTEQET--ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         6 l~~~e~--~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +++.+.  +||+||+.+||.++|++|++++|+|+|+| +|+.++.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+
T Consensus        80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di  157 (722)
T PRK07877         80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL  157 (722)
T ss_pred             CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence            567776  89999999999999999999999999996 99999999999996 9999999999999999998 5788999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++|+++++++|+++||+++|+++...++.. .+++++++|+||+|+|+++++..+|+.|++  ++||+|.+...+ 
T Consensus       158 ---G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~~~-  231 (722)
T PRK07877        158 ---GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARA--RRIPVLMATSDR-  231 (722)
T ss_pred             ---ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCC-
Confidence               9999999999999999999999999998753 477899999999999999999999999999  999999888554 


Q ss_pred             eEEE
Q 023036          162 CGEI  165 (288)
Q Consensus       162 ~G~v  165 (288)
                       |.+
T Consensus       232 -g~~  234 (722)
T PRK07877        232 -GLL  234 (722)
T ss_pred             -CCc
Confidence             655

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.2e-30  Score=240.66  Aligned_cols=174  Identities=20%  Similarity=0.387  Sum_probs=148.5

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~  103 (288)
                      +-++++.++|||||||||+|||++|||++.|+++|+|+|-|+|+.+||+|||||+.++|   |++||.++++..++.||+
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn   81 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPN   81 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCC
Confidence            45778899999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             ceeeeeecCCCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC----eeeecC
Q 023036          104 VRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN----HKYSKQ  177 (288)
Q Consensus       104 v~v~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~----~~~~~~  177 (288)
                      +++.++..++.+  .+.+|+++||+|..|.|+.++|..+|+.|.-  ..+|+|..|+.|+.|+|.+-..+    |++..+
T Consensus        82 ~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~--a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK  159 (603)
T KOG2013|consen   82 IKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLA--ASVPLIESGTGGFLGQVQVIIKGKTECYECIPK  159 (603)
T ss_pred             CceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHh--hcCCceecCcccccceEEEEecCCcceecccCC
Confidence            999999888765  4688999999999999999999999999988  99999999999999999987663    333332


Q ss_pred             C-CCccceeeecCCChhhhhcCCCcC
Q 023036          178 K-IEETIECQLRYPSFEEAISVPWRA  202 (288)
Q Consensus       178 ~-~~~~~~~~~~f~~l~~~~~~~~~~  202 (288)
                      . +.+.+.|++.-.+-+-.+++-|++
T Consensus       160 ~~~kTypvCTIRstPS~~iHCIVWAK  185 (603)
T KOG2013|consen  160 PVPKTYPVCTIRSTPSEPIHCIVWAK  185 (603)
T ss_pred             CCCCcCCceEeecCCCCceeeeeehH
Confidence            2 233344555433334444555544

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-29  Score=246.84  Aligned_cols=192  Identities=23%  Similarity=0.434  Sum_probs=167.4

Q ss_pred             CCCHHH----HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-----eEEEEcCCcCCcccccccc
Q 023036            5 ELTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDRVVTEEAWSANF   75 (288)
Q Consensus         5 ~l~~~e----~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg-----~i~lvD~d~v~~~nl~r~f   75 (288)
                      .+++++    -.|||-||+++|..-|+||.+.++++||+|++|||.+||++++|+|     .|++.|.|.++.+||+|||
T Consensus       400 ~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQF  479 (1013)
T KOG2012|consen  400 PPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQF  479 (1013)
T ss_pred             CCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhcccccee
Confidence            355555    3599999999999999999999999999999999999999999994     7999999999999999999


Q ss_pred             cCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-----cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCC
Q 023036           76 LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR  150 (288)
Q Consensus        76 ~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~  150 (288)
                      +|++.||   |++|+++++.....+||+++|+++...+..     ++++||.+.|+|..+.||.++|+.++..|.-  +.
T Consensus       480 LFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~--~~  554 (1013)
T KOG2012|consen  480 LFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVY--YR  554 (1013)
T ss_pred             ecccccc---CchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhh--hc
Confidence            9999999   999999999999999999999998877632     4799999999999999999999999999988  99


Q ss_pred             ceEEEEeeecceEEEEEEcCC--eeee---cCCCCccceeee-cCCChhhhhcCCCcC
Q 023036          151 VAFYTVDCRDSCGEIFVDLQN--HKYS---KQKIEETIECQL-RYPSFEEAISVPWRA  202 (288)
Q Consensus       151 ip~i~~~~~G~~G~v~~d~~~--~~~~---~~~~~~~~~~~~-~f~~l~~~~~~~~~~  202 (288)
                      +|++.+++.|..|.+.+..+-  -.|.   |+..++.+-|++ +||.-.+ +.+.|++
T Consensus       555 kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~Ie-HTiqWAR  611 (1013)
T KOG2012|consen  555 KPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIE-HTIQWAR  611 (1013)
T ss_pred             cchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHH-HHHHHHH
Confidence            999999999999988888773  2332   222334556777 8887776 6666753

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.95  E-value=1.6e-27  Score=219.34  Aligned_cols=148  Identities=17%  Similarity=0.114  Sum_probs=136.5

Q ss_pred             CCCCHHHHHhhhhhhhh---cc-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCC
Q 023036            4 EELTEQETALYDRQIRV---WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP   79 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl---~G-~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~   79 (288)
                      ++|++.+.+||.||+.+   || .++|++|++++|+   +||+|+.++.+|+. |||+|+|+|+|.|+.+||+  +++++
T Consensus        45 ~~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~  118 (318)
T TIGR03603        45 ETLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK  118 (318)
T ss_pred             hccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence            45888999999999999   56 5589999999999   99999999999999 9999999999999999999  89999


Q ss_pred             CccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHH--HHHHHHhcCCCceEEEEe
Q 023036           80 DENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKL--INEKCRKLSKRVAFYTVD  157 (288)
Q Consensus        80 ~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~--i~~~~~~~~~~ip~i~~~  157 (288)
                      +|+   |++|+++++++|.++||.++++..        .++++++|+||+|+|++.++..  +|++|.+  .++|||.+.
T Consensus       119 ~di---G~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~--~~~PlV~ga  185 (318)
T TIGR03603       119 EFI---LKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKE--TKKPNTIAF  185 (318)
T ss_pred             hhc---CcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHH--HCCCEEEEE
Confidence            999   999999999999999999988753        4678999999999999999865  9999999  999999999


Q ss_pred             eecceEEEEEEcC
Q 023036          158 CRDSCGEIFVDLQ  170 (288)
Q Consensus       158 ~~G~~G~v~~d~~  170 (288)
                      ..|+.|++..-++
T Consensus       186 v~g~~Gqv~~~~P  198 (318)
T TIGR03603       186 IDGPFVFITCTLP  198 (318)
T ss_pred             EccCEEEEEEEeC
Confidence            9999999875543

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.95  E-value=1.3e-27  Score=206.67  Aligned_cols=150  Identities=20%  Similarity=0.321  Sum_probs=137.4

Q ss_pred             CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccC
Q 023036            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (288)
Q Consensus         6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~   85 (288)
                      .++.-.+||.|.-+|+|.++.+||++++|+|+|+||+||-++..|+++|||+|+|+|.|.|+.+|+|||.-....++   
T Consensus         5 ~~~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---   81 (263)
T COG1179           5 ISDAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---   81 (263)
T ss_pred             hHHHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---
Confidence            34556799999999999999999999999999999999999999999999999999999999999999988888899   


Q ss_pred             CCcHHHHHHHHHhhhCCCceeeeeecCCCCcc-hhhh-ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        86 G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      |++|+++++++++++||+++|......+++.+ ++++ .+||+||+|.|+......+-.+|++  +++|+|.++..|
T Consensus        82 Gk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~--~ki~vIss~Gag  156 (263)
T COG1179          82 GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR--NKIPVISSMGAG  156 (263)
T ss_pred             ccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH--cCCCEEeecccc
Confidence            99999999999999999999999998887643 4444 6799999999999999999999999  999999765544

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.95  E-value=3.2e-27  Score=212.88  Aligned_cols=133  Identities=17%  Similarity=0.134  Sum_probs=121.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCc--cccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE--NVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~d--i~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++.+|  +   |++||++++++|+++||+++++.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~   77 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence            6999999999999999999999999999999999999999999999999  8   9999999999999999999999886


Q ss_pred             cCC---------C-------C--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC
Q 023036          111 GDL---------S-------S--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN  171 (288)
Q Consensus       111 ~~~---------~-------~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~  171 (288)
                      ..+         .       +  ...++++++|+|++++|+.+.|..++.+|..  +++|+|. ...|+.||+..-.|-
T Consensus        78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~-aalGfdg~lvmrhg~  153 (307)
T cd01486          78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVIN-AALGFDSYLVMRHGA  153 (307)
T ss_pred             eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEE-EEeccceEEEEEeCC
Confidence            543         0       1  1357889999999999999999999999999  9999998 578999999988763

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.94  E-value=7.9e-27  Score=227.49  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=132.1

Q ss_pred             cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        22 G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      ..-+.++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+...|++||++++++|+++|
T Consensus       329 P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~In  408 (664)
T TIGR01381       329 PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIF  408 (664)
T ss_pred             ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHC
Confidence            33455899999999999999999999999999999999999999999999999999998874458999999999999999


Q ss_pred             CCceeeeeecCC-------CC-----------cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          102 PMVRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       102 p~v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      |.|+++.+...+       ++           ...++++++|+|++|+|+.++|..++.+|..  +++|+|.+ +.|+.|
T Consensus       409 P~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~a-AlGfdg  485 (664)
T TIGR01381       409 PSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISA-ALGFDS  485 (664)
T ss_pred             CCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEE-Eeccce
Confidence            999999887653       22           2356889999999999999999999999999  99999998 589999


Q ss_pred             EEEEEcCC
Q 023036          164 EIFVDLQN  171 (288)
Q Consensus       164 ~v~~d~~~  171 (288)
                      ++.+-.|-
T Consensus       486 ~lvmrhG~  493 (664)
T TIGR01381       486 YVVMRHGI  493 (664)
T ss_pred             EEEEEecc
Confidence            99988763

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.94  E-value=8.3e-27  Score=197.56  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=116.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|+|+|+||+|++++++|+++|+++++|+|+|.|+.+|++||++. .+|+   |++|+++++++|+++||+++++++...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~   76 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQI---GEPKVEALKENLREINPFVKIEAINIK   76 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence            699999999999999999999999999999999999999999965 6788   999999999999999999999999888


Q ss_pred             CCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCC-CceEEEEeeecceEEEEE
Q 023036          113 LSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus       113 ~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~-~ip~i~~~~~G~~G~v~~  167 (288)
                      ++.. ..++++++|+||.|.|+.+.+..+++.|.+  + ++|||.+...|++|++..
T Consensus        77 ~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~--~~~ip~i~~~~~~~~~~~~~  131 (174)
T cd01487          77 IDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLG--NKNKPVVCASGMAGFGDSNN  131 (174)
T ss_pred             cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--HCCCCEEEEehhhccCCeEE
Confidence            7653 367899999999999999999988887766  5 999999988888887653

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.94  E-value=2.2e-26  Score=199.03  Aligned_cols=141  Identities=16%  Similarity=0.283  Sum_probs=120.9

Q ss_pred             hhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHh
Q 023036           19 RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK   98 (288)
Q Consensus        19 rl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~   98 (288)
                      +-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++|++||++ ..+++   |++|+++++++|+
T Consensus         9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~i---G~~Ka~~~~~~l~   84 (200)
T TIGR02354         9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQV---GEPKTEALKENIS   84 (200)
T ss_pred             HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhC---CCHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999999999999975 56788   9999999999999


Q ss_pred             hhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHH-HHhcCCCceEEEEeeecceEEEE
Q 023036           99 DFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEK-CRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus        99 ~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~-~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ++||+++++.+...+++. ..++++++|+||.|.|+.+.+..+++. ++.  .+.+++.+ +.|+.|+.+
T Consensus        85 ~inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~--~~~~~ii~-~~g~~g~~~  151 (200)
T TIGR02354        85 EINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEK--YKDKYLIA-ASGLAGYDD  151 (200)
T ss_pred             HHCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHH--cCCCcEEE-EeccccCCC
Confidence            999999999988887653 366789999999999999998876554 444  44444433 367777664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06153 hypothetical protein; Provisional

Probab=99.92  E-value=1.5e-24  Score=201.34  Aligned_cols=130  Identities=14%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccc-cCCCCccccCCC--cHHHHHHHHHhh
Q 023036           23 ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANF-LIPPDENVYGGK--TIAEVCCDSLKD   99 (288)
Q Consensus        23 ~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f-~~~~~di~~~G~--~Ka~~~~~~l~~   99 (288)
                      ...|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+.+|++||+ +++.+|+   |+  +|++++++++.+
T Consensus       168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~  244 (393)
T PRK06153        168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSN  244 (393)
T ss_pred             HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999998 5688999   99  999999999999


Q ss_pred             hCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          100 FNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       100 lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                      +||.  +.++...+++.+.+.++++|+||+|.|+.+.+..|+++|.+  +++|||.++..
T Consensus       245 in~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~  300 (393)
T PRK06153        245 MRRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMG  300 (393)
T ss_pred             hCCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeec
Confidence            9984  56666666554555789999999999999999999999999  99999987653

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.90  E-value=3.2e-23  Score=183.41  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=116.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-----C-----eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-----G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD   99 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-----g-----~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~   99 (288)
                      +..+|+|||+||+||+++++|+++|+     |     +|+|+|+|.|+++|++||+ |.++|+   |++||++++++++.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dV---G~~Ka~v~~~ri~~   85 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADV---GQNKAIVLVNRLNQ   85 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHC---CcHHHHHHHHHHHh
Confidence            68899999999999999999999973     4     8999999999999999995 567889   99999999999999


Q ss_pred             hCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcC-CCceEEEEeeecceEEEEEE
Q 023036          100 FNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS-KRVAFYTVDCRDSCGEIFVD  168 (288)
Q Consensus       100 lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~-~~ip~i~~~~~G~~G~v~~d  168 (288)
                      .| .++++++...+..  .+++.++|+||+|.|+.++|..|++.|++.+ .++||+.+++.+..|+|.+-
T Consensus        86 ~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g  152 (244)
T TIGR03736        86 AM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILG  152 (244)
T ss_pred             cc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEE
Confidence            88 7889998877765  3456789999999999999999999997622 24899999999999987744

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.9e-20  Score=164.89  Aligned_cols=144  Identities=15%  Similarity=0.180  Sum_probs=129.6

Q ss_pred             HhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH
Q 023036           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (288)
Q Consensus        12 ~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~   91 (288)
                      +...|.+.++|.++|+|++++-|+|||+||+||-++-.|+++|+++|.|+|.|.|+.+.|+||....-.|+   |.+|+.
T Consensus        55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~  131 (430)
T KOG2018|consen   55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVM  131 (430)
T ss_pred             HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHH
Confidence            33457788899999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHhhhCCCceeeeeecCCCCcc-hh-hhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           92 VCCDSLKDFNPMVRVSVEKGDLSSLD-GE-FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        92 ~~~~~l~~lNp~v~v~~~~~~~~~~~-~~-~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ++++.++++.|.+.|++...-++..+ ++ .+.+-|+||+|.||.++..-+-++|.+  +++++|.+...+
T Consensus       132 clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~--~~l~Viss~Gaa  200 (430)
T KOG2018|consen  132 CLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYN--HGLKVISSTGAA  200 (430)
T ss_pred             HHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHH--cCCceEeccCcc
Confidence            99999999999999999887776433 33 346789999999999999999999988  999999654444

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.74  E-value=9.7e-18  Score=147.66  Aligned_cols=156  Identities=19%  Similarity=0.354  Sum_probs=130.3

Q ss_pred             HHHhhhhhhhh--cc-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCC
Q 023036           10 ETALYDRQIRV--WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (288)
Q Consensus        10 e~~rYdRqirl--~G-~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G   86 (288)
                      +...|+|-+.|  .| ....+|++...|.|+|.||+||-+|..|.+.|||++.|+|.|+|+..|++|-|| +++..   |
T Consensus        58 DSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf-~P~Qa---G  133 (422)
T KOG2336|consen   58 DSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFF-QPDQA---G  133 (422)
T ss_pred             cCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccccc-Ccccc---c
Confidence            34679998877  55 577889999999999999999999999999999999999999999999999754 67777   9


Q ss_pred             CcHHHHHHHHHhhhCCCceeeeeecCCCCc--chhhh-----------ccCcEEEEecCChhhHHHHHHHHHhcCCCceE
Q 023036           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSL--DGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (288)
Q Consensus        87 ~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~--~~~~~-----------~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~  153 (288)
                      .+|++++.+.|.++||+|.++++...++..  -+.|.           +..|+|+.|.|++++|..+|..|-+  .+--|
T Consensus       134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE--~~q~W  211 (422)
T KOG2336|consen  134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNE--LNQTW  211 (422)
T ss_pred             chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHH--hhhHH
Confidence            999999999999999999999998876531  11121           4489999999999999999999988  66667


Q ss_pred             EEEeee--cceEEEEEEcCC
Q 023036          154 YTVDCR--DSCGEIFVDLQN  171 (288)
Q Consensus       154 i~~~~~--G~~G~v~~d~~~  171 (288)
                      +..+..  ...|.+..-.++
T Consensus       212 mESGVSEnAVSGHIQ~i~PG  231 (422)
T KOG2336|consen  212 MESGVSENAVSGHIQLIVPG  231 (422)
T ss_pred             HHccCccccccceeEEecCC
Confidence            755554  456777666553

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.59  E-value=1.3e-14  Score=141.06  Aligned_cols=145  Identities=15%  Similarity=0.163  Sum_probs=121.9

Q ss_pred             CCCCHHHHHhhhhhhhhc------cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccC
Q 023036            4 EELTEQETALYDRQIRVW------GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI   77 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl~------G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~   77 (288)
                      ++|++...+||..||..+      |....++.++++|+|+|+|++|+.++.+|+.+|+++|..+|.|.+ .+|++|    
T Consensus        96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR----  170 (637)
T TIGR03693        96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR----  170 (637)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence            458999999999999985      556677789999999999999999999999999999999999999 999998    


Q ss_pred             CCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC---ce
Q 023036           78 PPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR---VA  152 (288)
Q Consensus        78 ~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~---ip  152 (288)
                          |   |+. ++.+++    .||++.++..+....+...+.++++|+||...|+  .....++|+.|.+  .+   +|
T Consensus       171 ----I---gEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IP  236 (637)
T TIGR03693       171 ----I---HEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKE--EGKGFIP  236 (637)
T ss_pred             ----H---HHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHH--cCCCeEE
Confidence                6   776 554444    9999999988764333346788999999999984  4567899999999  88   67


Q ss_pred             EEEEeeecceEEEEE
Q 023036          153 FYTVDCRDSCGEIFV  167 (288)
Q Consensus       153 ~i~~~~~G~~G~v~~  167 (288)
                      ++.++..++.|-+|-
T Consensus       237 ai~~G~~~liGPlft  251 (637)
T TIGR03693       237 AICLKQVGLAGPVFQ  251 (637)
T ss_pred             EEEcccceeecceEC
Confidence            777777778887774

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.57  E-value=7.6e-15  Score=138.50  Aligned_cols=145  Identities=15%  Similarity=0.114  Sum_probs=121.7

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~  103 (288)
                      -...++.+.++|+.|+|.+||.||+||+..||++||++|..+|+.+|-.||.+++-+|-...|++||++++++|++++|.
T Consensus       333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~  412 (669)
T KOG2337|consen  333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS  412 (669)
T ss_pred             cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence            34578999999999999999999999999999999999999999999999999998887335799999999999999999


Q ss_pred             ceeeeeecCC-------CC-----------cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036          104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (288)
Q Consensus       104 v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v  165 (288)
                      ++-+.+...+       .+           ..+.++++.|+|+..+|+.+.|..=.-+|..  +++-.|. .+.|+-.|+
T Consensus       413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~--~~KivIN-aALGFDsyl  489 (669)
T KOG2337|consen  413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAA--KNKIVIN-AALGFDSYL  489 (669)
T ss_pred             ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhh--hcceEee-eecccceeE
Confidence            9766554432       11           1245689999999999999998776666655  6665555 568999999


Q ss_pred             EEEcCC
Q 023036          166 FVDLQN  171 (288)
Q Consensus       166 ~~d~~~  171 (288)
                      ..-.|.
T Consensus       490 VMRHG~  495 (669)
T KOG2337|consen  490 VMRHGT  495 (669)
T ss_pred             EEecCC
Confidence            998885

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.85  E-value=2.6e-08  Score=81.83  Aligned_cols=124  Identities=12%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHH---HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~---l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      -...|.++|||-+|--++-+|.   +.|..+|.++|.+.|++.|+--  ..-...+   |.+|++.++ +|..-.+.-.|
T Consensus        17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~---GEyKv~Fi~-rl~~~~f~r~V   90 (217)
T COG4015          17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKV---GEYKVDFIK-RLGRVHFGRRV   90 (217)
T ss_pred             CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCc---chhHHHHHH-HhCcCCCCcee
Confidence            3557999999999999999998   6789999999999999999742  1223456   999999875 55666777789


Q ss_pred             eeeecCCCCcchhhhccCcEEEEec---CChhhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSC---CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~---~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      ++.++.++..+...+.+ |+|++|.   ++.+....|.++|++  .++.-|  ++.|.||+
T Consensus        91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~--rG~~Ti--sT~GVFGi  146 (217)
T COG4015          91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKE--RGIKTI--STNGVFGI  146 (217)
T ss_pred             ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHH--cCceEe--ecCceeec
Confidence            99988887766677776 8888875   567788899999999  877655  67788885

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.06  E-value=1.6e-05  Score=64.36  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++++|+|+|+||.|..+++.|...|+++|+|+..                      -..|++.+++.+    +...+.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~~   62 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNIE   62 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Cccccc
Confidence            689999999999999999999999999999999864                      234777777776    333444


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCCh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ...-.  + ..+.+.++|+||.|+...
T Consensus        63 ~~~~~--~-~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   63 AIPLE--D-LEEALQEADIVINATPSG   86 (135)
T ss_dssp             EEEGG--G-HCHHHHTESEEEE-SSTT
T ss_pred             eeeHH--H-HHHHHhhCCeEEEecCCC
Confidence            43321  1 235678999999998654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.98  E-value=6.8e-05  Score=65.04  Aligned_cols=95  Identities=7%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++.+|+|||.|.+|...++.|...| .++++++++.-             ..+           .+...+    -.+.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------~~l-----------~~l~~~----~~i~   57 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------ENL-----------VKLVEE----GKIR   57 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------HHH-----------HHHHhC----CCEE
Confidence            378899999999999999999999999 67999975210             001           111111    1233


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~  157 (288)
                      .....   .....+.++|+||.++++.+....|.+.|+   .++++-.++
T Consensus        58 ~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~---~~~lvn~~d  101 (202)
T PRK06718         58 WKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLP---ENALFNVIT  101 (202)
T ss_pred             EEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHH---hCCcEEECC
Confidence            33322   234567889999999999999999999994   456554444

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.94  E-value=3.9e-05  Score=69.98  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ++.++|+|+|+||.|..++..|+..|+++|+|+|.                      ...|++.+++.+.+.+|.+.+..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR----------------------~~~ka~~la~~l~~~~~~~~~~~  182 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV----------------------DPARAAALADELNARFPAARATA  182 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHHHhhCCCeEEEe
Confidence            56679999999999999999999999999999986                      23488889998888777644432


Q ss_pred             eecCCCCcchhhhccCcEEEEec
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      ..    + ..+.+.++|+||.|+
T Consensus       183 ~~----~-~~~~~~~aDiVInaT  200 (284)
T PRK12549        183 GS----D-LAAALAAADGLVHAT  200 (284)
T ss_pred             cc----c-hHhhhCCCCEEEECC
Confidence            21    1 133457899999986

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.87  E-value=0.00015  Score=63.00  Aligned_cols=103  Identities=16%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      |++.+|+|||.|.+|..-++.|...|. .+++++++.-             +.+            +.+.+..   +++.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------~~l------------~~l~~~~---~i~~   57 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------SEL------------TLLAEQG---GITW   57 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HHH------------HHHHHcC---CEEE
Confidence            678999999999999999999999995 6999987321             111            1122211   3555


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v  165 (288)
                      ....+.   .+.+.++++||.++++.+....+...|++  .++++-.++.-....++
T Consensus        58 ~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~--~~ilvn~~d~~e~~~f~  109 (205)
T TIGR01470        58 LARCFD---ADILEGAFLVIAATDDEELNRRVAHAARA--RGVPVNVVDDPELCSFI  109 (205)
T ss_pred             EeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHH--cCCEEEECCCcccCeEE
Confidence            554433   45678999999999998888899999999  89988666554444333

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00012  Score=69.31  Aligned_cols=99  Identities=19%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|+|+|+|++|+-+|.+|+..|.+.|++.|...                      .|    +.++.+.... ++++..-
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~----------------------~~----~~~i~~~~~~-~v~~~~v   54 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK----------------------EK----CARIAELIGG-KVEALQV   54 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH----------------------HH----HHHHHhhccc-cceeEEe
Confidence            5799999999999999999999999999998621                      11    1222222111 4444444


Q ss_pred             CCCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          112 DLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       112 ~~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +..+  ...+.++++|+||.+....-.. .+-+.|-+  .++++++.....
T Consensus        55 D~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~--~gv~yvDts~~~  102 (389)
T COG1748          55 DAADVDALVALIKDFDLVINAAPPFVDL-TILKACIK--TGVDYVDTSYYE  102 (389)
T ss_pred             cccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHH--hCCCEEEcccCC
Confidence            4433  2356788888888876543333 66677766  777777665544

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.59  E-value=0.00013  Score=56.36  Aligned_cols=89  Identities=18%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++.+|+|||.|.+|..-++.|..+| .+++++.++. +             ..           .       .  .++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~-------------~~-----------~-------~--~i~   48 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E-------------FS-----------E-------G--LIQ   48 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H-------------HH-----------H-------T--SCE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h-------------hh-----------h-------h--HHH
Confidence            478999999999999999999999999 6799998754 0             00           0       1  112


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~  157 (288)
                      .....+    .+.++++++|+.++++......|.+.|++  .++|+-.+.
T Consensus        49 ~~~~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~--~~i~vn~~D   92 (103)
T PF13241_consen   49 LIRREF----EEDLDGADLVFAATDDPELNEAIYADARA--RGILVNVVD   92 (103)
T ss_dssp             EEESS-----GGGCTTESEEEE-SS-HHHHHHHHHHHHH--TTSEEEETT
T ss_pred             HHhhhH----HHHHhhheEEEecCCCHHHHHHHHHHHhh--CCEEEEECC
Confidence            223222    24577899999999999999999999999  889876544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.57  E-value=0.00081  Score=55.96  Aligned_cols=84  Identities=6%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++.+|+|||.|.+|...++.|...|. .+++++++..+                            .+.++.   .+.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~----------------------------~l~~l~---~i~   57 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK----------------------------EMKELP---YIT   57 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH----------------------------HHHhcc---CcE
Confidence            4789999999999999999999999996 59999753211                            111111   122


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .....   +.++.+.++|+||.++++.+....+...|++
T Consensus        58 ~~~~~---~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~   93 (157)
T PRK06719         58 WKQKT---FSNDDIKDAHLIYAATNQHAVNMMVKQAAHD   93 (157)
T ss_pred             EEecc---cChhcCCCceEEEECCCCHHHHHHHHHHHHH
Confidence            22222   3345678899999999999999999999977

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.45  E-value=0.0016  Score=57.26  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=72.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++.+|+|||.|.++..=++.|..+| .+||++-++.-.             ++           . .+.+ ++  .++
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~-------------el-----------~-~l~~-~~--~i~   72 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK-------------EF-----------L-DLKK-YG--NLK   72 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH-------------HH-----------H-HHHh-CC--CEE
Confidence            456889999999999999999999999 559998764211             11           0 1111 22  344


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .....+   .++.+.++++||.|+++.+....|.+.|+.  .++++..+..-.
T Consensus        73 ~~~r~~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~--~~~lvn~vd~p~  120 (223)
T PRK05562         73 LIKGNY---DKEFIKDKHLIVIATDDEKLNNKIRKHCDR--LYKLYIDCSDYK  120 (223)
T ss_pred             EEeCCC---ChHHhCCCcEEEECCCCHHHHHHHHHHHHH--cCCeEEEcCCcc
Confidence            444433   456678999999999999999999999999  888877665433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.43  E-value=0.00061  Score=62.30  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++++|+|+||+|..++..|+..|+.+|+|++.+              .+     ...|++.+++.+.+..+.+.+..
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~--------------~~-----~~~~a~~l~~~l~~~~~~~~~~~  184 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK--------------DD-----FYERAEQTAEKIKQEVPECIVNV  184 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC--------------ch-----HHHHHHHHHHHHhhcCCCceeEE
Confidence            457889999999999999999999999999998751              10     12467777777766555444332


Q ss_pred             eecCCCC--cchhhhccCcEEEEecC
Q 023036          109 EKGDLSS--LDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~--~~~~~~~~~dvVi~~~~  132 (288)
                      .  ++.+  ...+.+..+|+||.|+.
T Consensus       185 ~--d~~~~~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        185 Y--DLNDTEKLKAEIASSDILVNATL  208 (289)
T ss_pred             e--chhhhhHHHhhhccCCEEEEeCC
Confidence            2  2221  11334567899998873

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.23  E-value=0.0011  Score=62.95  Aligned_cols=93  Identities=20%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      |+|+|+|.+|+.+++.|+..+-. ++++.|.                      ...|++.+++.+    ...++.....+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d   54 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD   54 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence            78999999999999999999854 8999885                      233444444443    22355555555


Q ss_pred             CCCc--chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          113 LSSL--DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       113 ~~~~--~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                      ..+.  ..++++++|+||.|..+. ....+-+.|.+  .++++++
T Consensus        55 ~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~--~g~~yvD   96 (386)
T PF03435_consen   55 VNDPESLAELLRGCDVVINCAGPF-FGEPVARACIE--AGVHYVD   96 (386)
T ss_dssp             TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHH--HT-EEEE
T ss_pred             cCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHH--hCCCeec
Confidence            5442  366789999999998665 55567778877  7777777

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.19  E-value=0.0011  Score=60.49  Aligned_cols=77  Identities=17%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++|+|+|+||.|..++..|...|+.+|+|++.                      -..|++.+++.+....   .+..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------------------t~~ka~~La~~~~~~~---~~~~  177 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------------------NPDKLSRLVDLGVQVG---VITR  177 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------------------CHHHHHHHHHHhhhcC---ccee
Confidence            46789999999999999999999999999999864                      2236777777654331   1111


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .. ...+ ....+.++|+||.|+.
T Consensus       178 ~~-~~~~-~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       178 LE-GDSG-GLAIEKAAEVLVSTVP  199 (282)
T ss_pred             cc-chhh-hhhcccCCCEEEECCC
Confidence            11 0011 1234567999999974

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.18  E-value=0.0013  Score=59.95  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++|+|+|+||.|..++-.|+..|+.+|+|+|.                      ...|++.+++.+.+..+...+..
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------------------~~~ka~~La~~~~~~~~~~~~~~  182 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVVG  182 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccCcceEEe
Confidence            45678999999999999999999999999999974                      22377778877655444322222


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .  .... ..+...++|+||.|+.
T Consensus       183 ~--~~~~-~~~~~~~~divINaTp  203 (283)
T PRK14027        183 V--DARG-IEDVIAAADGVVNATP  203 (283)
T ss_pred             c--CHhH-HHHHHhhcCEEEEcCC
Confidence            1  1111 1223467899998873

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.18  E-value=0.00097  Score=63.57  Aligned_cols=77  Identities=21%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|.+++|+|||+|-+|.-+|++|...|+..|+|+-.                      -..||+.+++++.     ..+.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------------------T~erA~~La~~~~-----~~~~  227 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------------------TLERAEELAKKLG-----AEAV  227 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHhC-----Ceee
Confidence            378899999999999999999999999999999643                      3347777787776     1222


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTT  136 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~  136 (288)
                      ..     +...+++..+|+||.++..+..
T Consensus       228 ~l-----~el~~~l~~~DvVissTsa~~~  251 (414)
T COG0373         228 AL-----EELLEALAEADVVISSTSAPHP  251 (414)
T ss_pred             cH-----HHHHHhhhhCCEEEEecCCCcc
Confidence            11     1236788899999999876543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.10  E-value=0.002  Score=58.95  Aligned_cols=81  Identities=14%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++|+|+|+||.+..++-.|+..|+.+|+|++.+              .+     ...|++.+++.+.+..+ ..+..
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt--------------~~-----~~~ka~~la~~~~~~~~-~~~~~  181 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR--------------DE-----FFDKALAFAQRVNENTD-CVVTV  181 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC--------------cc-----HHHHHHHHHHHhhhccC-ceEEE
Confidence            467799999999999999999999999999998741              10     24588888887755332 12222


Q ss_pred             eecCCCCc--chhhhccCcEEEEec
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~  131 (288)
                      ..  +.+.  ..+.+.++|+||.|+
T Consensus       182 ~~--~~~~~~l~~~~~~aDivINaT  204 (288)
T PRK12749        182 TD--LADQQAFAEALASADILTNGT  204 (288)
T ss_pred             ec--hhhhhhhhhhcccCCEEEECC
Confidence            21  1110  122346789999987

>PRK04148 hypothetical protein; Provisional

Probab=97.10  E-value=0.0065  Score=49.17  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=73.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ++.+|++||+| .|.++|..|+..|. .++-+|-                      ....++.+++.        .+.+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi----------------------~~~aV~~a~~~--------~~~~v   63 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDI----------------------NEKAVEKAKKL--------GLNAF   63 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHh--------CCeEE
Confidence            45789999999 99999999999995 5888885                      21122222222        24566


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ..++.+.+.+..+++|+|-...-+++....|-+++++  .+.+++.....|
T Consensus        64 ~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~~l~~  112 (134)
T PRK04148         64 VDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIKPLSG  112 (134)
T ss_pred             ECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence            6666666788899999999999999999999999999  888888655433

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.06  E-value=0.0012  Score=63.41  Aligned_cols=77  Identities=13%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+.+++|+|+|+|+.|..++++|...|+.+|+|+..                      -..|++.+++.+..    ..  
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------------------t~~ra~~La~~~~~----~~--  229 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------------------TIEKAQKITSAFRN----AS--  229 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHhcC----Ce--
Confidence            367899999999999999999999999999999754                      11256666655421    11  


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      +.  .+ +...+.+.++|+||.|+.++.
T Consensus       230 ~~--~~-~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        230 AH--YL-SELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             Ee--cH-HHHHHHhccCCEEEECcCCCC
Confidence            11  11 112567889999999987644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.99  E-value=0.0022  Score=58.23  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +.+++|+|+|+||+|..+++.|...|+.++++++.                      ...|++.+++.+....+ +.+  
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R----------------------~~~~a~~l~~~~~~~~~-~~~--  175 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR----------------------TVERAEELAKLFGALGK-AEL--  175 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc-eee--
Confidence            66789999999999999999999999999999875                      22356666666654321 221  


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                       ..    ...+.+.++|+||.|+.
T Consensus       176 -~~----~~~~~~~~~DivInaTp  194 (278)
T PRK00258        176 -DL----ELQEELADFDLIINATS  194 (278)
T ss_pred             -cc----cchhccccCCEEEECCc
Confidence             11    11345678999999874

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0028  Score=57.70  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +..+|+|+|+||.+..++..|+..|+.+|+|+..                      -..|++.+++.+.+..+.+.....
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~~~~~~~~  182 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGAAVEAAAL  182 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhcccccccccc
Confidence            3588999999999999999999999999999864                      445888999998888873222221


Q ss_pred             ecCCCCcchhhhccCcEEEEecC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .    +.  +....+|+||.|+.
T Consensus       183 ~----~~--~~~~~~dliINaTp  199 (283)
T COG0169         183 A----DL--EGLEEADLLINATP  199 (283)
T ss_pred             c----cc--ccccccCEEEECCC
Confidence            1    11  11116899999874

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0022  Score=60.85  Aligned_cols=67  Identities=22%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHHHHHhCCCCCCC-CcchHHHHHHHHHHHHHhcCCCc----------------------chhhhhhhHH
Q 023036          208 SKLYFALRVLEQFEEAEGRSPGEI-SIADLPAVLKLKKELCEANVRNF----------------------KLVFVCIIGC  264 (288)
Q Consensus       208 ~~~~~~~~aL~~f~~~~~~~P~~~-~~~d~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~  264 (288)
                      ...++++++..+|.+++|++|+.. ...|+..++.++..++..++.+.                      .+++||++||
T Consensus       413 ~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQ  492 (523)
T KOG2016|consen  413 IGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFIGGIAAQ  492 (523)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHHhhHHHH
Confidence            457889999999999999999821 24688889999999888777552                      3449999999


Q ss_pred             HHHHHhhccc
Q 023036          265 LVIKLQSCCT  274 (288)
Q Consensus       265 ~~i~~~~~~~  274 (288)
                      |+||.++.-.
T Consensus       493 EvIKLiTkQy  502 (523)
T KOG2016|consen  493 EVIKLITKQY  502 (523)
T ss_pred             HHHHHHHhce
Confidence            9999998753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.91  E-value=0.003  Score=51.58  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|+|+|++|..+++.|...|...++++|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r   51 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR   51 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence            56789999999999999999999998777888875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.91  E-value=0.0069  Score=58.94  Aligned_cols=115  Identities=14%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++.+|+|||.|.++..=++.|..+|. +++++-++.-             +++               +++-..-+++
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------~~~---------------~~l~~~~~i~   59 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------PQF---------------TAWADAGMLT   59 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HHH---------------HHHHhCCCEE
Confidence            4789999999999999999999999996 5999855211             111               1111112345


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE---EEcCCeeeec
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF---VDLQNHKYSK  176 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~---~d~~~~~~~~  176 (288)
                      .....+   ..+.++++++||.|+++.+...+|.+.|++  .++++-.++.-....++|   ++-|+..+.-
T Consensus        60 ~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~~lvN~~d~~~~~~f~~pa~~~~g~l~iai  126 (457)
T PRK10637         60 LVEGPF---DESLLDTCWLAIAATDDDAVNQRVSEAAEA--RRIFCNVVDAPKAASFIMPSIIDRSPLMVAV  126 (457)
T ss_pred             EEeCCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHHH--cCcEEEECCCcccCeEEEeeEEecCCEEEEE
Confidence            555443   356788999999999999999999999999  888876665443333332   3344544433

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.87  E-value=0.0031  Score=51.47  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV  108 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~  108 (288)
                      ||.|||+ |.+|+.++-.|+..|+. +|.|+|.                      ...|++..+.-|+...+..  .+..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i   59 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI----------------------NEDKAEGEALDLSHASAPLPSPVRI   59 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES----------------------SHHHHHHHHHHHHHHHHGSTEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEecc----------------------Ccccceeeehhhhhhhhhccccccc
Confidence            7999999 99999999999999986 4999986                      3335666666666654333  2333


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..     ...+.+++.|+||.+..
T Consensus        60 ~~-----~~~~~~~~aDivvitag   78 (141)
T PF00056_consen   60 TS-----GDYEALKDADIVVITAG   78 (141)
T ss_dssp             EE-----SSGGGGTTESEEEETTS
T ss_pred             cc-----ccccccccccEEEEecc
Confidence            32     23566889999999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.82  E-value=0.0022  Score=53.45  Aligned_cols=114  Identities=16%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|.+||+|..|+.+++||..+|.. ++++|.+.-....+...           |-..++...+.+++.  ++-+.....
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-----------g~~~~~s~~e~~~~~--dvvi~~v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-----------GAEVADSPAEAAEQA--DVVILCVPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-----------TEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-----------hhhhhhhhhhHhhcc--cceEeeccc
Confidence            4799999999999999999999975 88888543222222111           111111112222222  222222221


Q ss_pred             C--CCCc-----chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 D--LSSL-----DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~--~~~~-----~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .  ..+.     ....+..-+++|+++ .+++...++.+.+.+  +++.|+++...|.
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg  123 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESH
T ss_pred             chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecc
Confidence            1  0000     112233456777765 567888899999988  9999999998874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.76  E-value=0.016  Score=43.46  Aligned_cols=90  Identities=13%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC--CeEEEE-cCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV--GSLTLM-DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv--g~i~lv-D~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ||.|||+|.+|..+++.|+..|+  .++.++ +.                      ...|++.++    +..+ +.+...
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~----~~~~-~~~~~~   53 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELA----KEYG-VQATAD   53 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHH----HHCT-TEEESE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHH----Hhhc-cccccC
Confidence            68999999999999999999995  334432 32                      222333333    3333 122211


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                            ...+.++..|+||.|..+......+.++ .....+..+|+.
T Consensus        54 ------~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~   93 (96)
T PF03807_consen   54 ------DNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISI   93 (96)
T ss_dssp             ------EHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred             ------ChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEe
Confidence                  2466778899999999876666555555 212255556654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.71  E-value=0.0073  Score=52.69  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|.+++|+|||.|.+|.-=++.|..+|.. ++++-++. + .           ++            ..+.+.++   +.
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~-~-----------el------------~~~~~~~~---i~   59 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E-P-----------EL------------KALIEEGK---IK   59 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c-H-----------HH------------HHHHHhcC---cc
Confidence            46789999999999999999999999955 88876643 1 1           11            11112121   23


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ....   ....+.+..+++||.++++.+...++.+.|++  .++|.-.++--.+
T Consensus        60 ~~~~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~--~~i~vNv~D~p~~  108 (210)
T COG1648          60 WIER---EFDAEDLDDAFLVIAATDDEELNERIAKAARE--RRILVNVVDDPEL  108 (210)
T ss_pred             hhhc---ccChhhhcCceEEEEeCCCHHHHHHHHHHHHH--hCCceeccCCccc
Confidence            2222   23455666799999999999999999999999  8888776665544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.69  E-value=0.011  Score=54.56  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +...+|+|+|+|.+|..++++|...|...++++|.                      ...|++.+++.+..     .+..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------------------~~~ra~~la~~~g~-----~~~~  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------------------TYERAEELAKELGG-----NAVP  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----eEEe
Confidence            57899999999999999999999999999999875                      22345555554421     1111


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~  144 (288)
                          ++ ...+.+.++|+||.|+.+......+....
T Consensus       229 ----~~-~~~~~l~~aDvVi~at~~~~~~~~~~~~~  259 (311)
T cd05213         229 ----LD-ELLELLNEADVVISATGAPHYAKIVERAM  259 (311)
T ss_pred             ----HH-HHHHHHhcCCEEEECCCCCchHHHHHHHH
Confidence                11 12345678999999997765533333333

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.69  E-value=0.0075  Score=55.52  Aligned_cols=75  Identities=23%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV  108 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~  108 (288)
                      ++|.|+|+|++|+.++..|+..|+. +|.|+|.                      ...|++..+..|+...+..  .+..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~----------------------~~~~~~~~a~dL~~~~~~~~~~~~i   58 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI----------------------NEEKAEGEALDLEDALAFLPSPVKI   58 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHhHhhHHHHhhccCCCeEE
Confidence            3799999999999999999999985 8999986                      2234555566665543211  1122


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ...     +.+.++++|+||.|...
T Consensus        59 ~~~-----~~~~l~~aDIVIitag~   78 (306)
T cd05291          59 KAG-----DYSDCKDADIVVITAGA   78 (306)
T ss_pred             EcC-----CHHHhCCCCEEEEccCC
Confidence            211     23347899999998753

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.016  Score=51.12  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=66.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+++|+|+|-+|..+|++|+..|-. ++++|.+.              +        +   +.+.+++   .....++..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~--------------~--------~---~~~~~~~---~~~~~~v~g   51 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDE--------------E--------R---VEEFLAD---ELDTHVVIG   51 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCH--------------H--------H---HHHHhhh---hcceEEEEe
Confidence            4799999999999999999999966 77777511              0        1   1111221   112333333


Q ss_pred             CCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc-eEEEEEEcC
Q 023036          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS-CGEIFVDLQ  170 (288)
Q Consensus       112 ~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~-~G~v~~d~~  170 (288)
                      +-.+   +.+.-+.++|++|.++.+......+-..+++. .++|-+.+....- +..++-..|
T Consensus        52 d~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~-~gv~~viar~~~~~~~~~~~~~g  113 (225)
T COG0569          52 DATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKE-FGVPRVIARARNPEHEKVLEKLG  113 (225)
T ss_pred             cCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHh-cCCCcEEEEecCHHHHHHHHHcC
Confidence            2222   22334688999999998866666666555331 5788887776643 334443344

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.49  E-value=0.015  Score=53.95  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSV  108 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~~  108 (288)
                      ..+|.|||+|.+|+.+|-.|+..|+. .|.|+|-                      .+.+++..+.-|+...|.. ++..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~----------------------~~~~~~g~~~Dl~~~~~~~~~~~i   63 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI----------------------NKEKAEGDAMDLSHAVPFTSPTKI   63 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCchhHHHHHHHHhhccccCCeEE
Confidence            46899999999999999999999985 7999985                      2334555566667665432 2222


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...     +.+.++++|+||.+..
T Consensus        64 ~~~-----~~~~~~~adivIitag   82 (315)
T PRK00066         64 YAG-----DYSDCKDADLVVITAG   82 (315)
T ss_pred             EeC-----CHHHhCCCCEEEEecC
Confidence            221     2345799999999864

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.016  Score=57.05  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=65.8

Q ss_pred             HHHHHHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC
Q 023036           24 DAQRRLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP  102 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp  102 (288)
                      .-+.-+.+++|+|-|+| ++|+|+++.++..+.++|.++|.                      ++++-..+...+++..|
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~----------------------~E~~~~~i~~el~~~~~  300 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR----------------------DEYKLYLIDMELREKFP  300 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC----------------------chHHHHHHHHHHHhhCC
Confidence            45667899999999966 69999999999999999999987                      55566667777788777


Q ss_pred             CceeeeeecCCCCcc--hhhhcc--CcEEEEe
Q 023036          103 MVRVSVEKGDLSSLD--GEFYDK--FDVVVVS  130 (288)
Q Consensus       103 ~v~v~~~~~~~~~~~--~~~~~~--~dvVi~~  130 (288)
                      ..++..+-.++.+..  ...+.+  .|+|+-+
T Consensus       301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA  332 (588)
T COG1086         301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA  332 (588)
T ss_pred             CcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence            777777777766532  445555  6777654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.47  E-value=0.024  Score=52.10  Aligned_cols=33  Identities=12%  Similarity=0.125  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            3579999999999999999999995 59998873

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.46  E-value=0.052  Score=42.00  Aligned_cols=90  Identities=20%  Similarity=0.255  Sum_probs=59.0

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCC
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL  113 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~  113 (288)
                      |+|+|.|.+|.++++.|...| -.++++|.+.                      .+    .+.+.+..    +.+...+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~----------------------~~----~~~~~~~~----~~~i~gd~   49 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDP----------------------ER----VEELREEG----VEVIYGDA   49 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSH----------------------HH----HHHHHHTT----SEEEES-T
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCc----------------------HH----HHHHHhcc----cccccccc
Confidence            689999999999999999954 5699998721                      12    22222222    33444444


Q ss_pred             CC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          114 SS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       114 ~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .+   +...-+++++.||+++++......+...+++....++.+
T Consensus        50 ~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   50 TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII   93 (116)
T ss_dssp             TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred             hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence            43   223456789999999988888888888888744444444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.45  E-value=0.012  Score=50.24  Aligned_cols=80  Identities=18%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .+++++++|+|. |++|..+++.|+..| .++++++.+                      ..|++.+++.+.+.. .+.+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~   80 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV   80 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence            467899999996 999999999999998 478888641                      235556666665332 2233


Q ss_pred             eeeecCCCC--cchhhhccCcEEEEecCC
Q 023036          107 SVEKGDLSS--LDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       107 ~~~~~~~~~--~~~~~~~~~dvVi~~~~~  133 (288)
                      ...  +..+  ...+.++++|+||.++..
T Consensus        81 ~~~--~~~~~~~~~~~~~~~diVi~at~~  107 (194)
T cd01078          81 GAV--ETSDDAARAAAIKGADVVFAAGAA  107 (194)
T ss_pred             EEe--eCCCHHHHHHHHhcCCEEEECCCC
Confidence            322  1212  123567889999988754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.44  E-value=0.014  Score=56.26  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            367899999999999999999999999999999875

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=96.41  E-value=0.013  Score=56.48  Aligned_cols=69  Identities=23%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             CchhHHHHHHHHHHHHHH-hCCCCCCCC----------------------cchHHHHHHHHHHHHHhcC-----------
Q 023036          206 KASKLYFALRVLEQFEEA-EGRSPGEIS----------------------IADLPAVLKLKKELCEANV-----------  251 (288)
Q Consensus       206 ~~~~~~~~~~aL~~f~~~-~~~~P~~~~----------------------~~d~~~~~~~~~~~~~~~~-----------  251 (288)
                      ..+...++.+||.+|-++ ||.+|-+..                      .+|++++.++++++.+..|           
T Consensus       285 ~~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i  364 (425)
T cd01493         285 QSSSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEI  364 (425)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence            345678889999999887 887764331                      3567778777777655433           


Q ss_pred             -------------------CCcchhhhhhhHHHHHHHhhccc
Q 023036          252 -------------------RNFKLVFVCIIGCLVIKLQSCCT  274 (288)
Q Consensus       252 -------------------~~~~~~~g~~~~~~~i~~~~~~~  274 (288)
                                         -+...++||++||||||.+|...
T Consensus       365 ~~FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t~q~  406 (425)
T cd01493         365 KLFCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLITKQY  406 (425)
T ss_pred             HHHHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHhccc
Confidence                               12246699999999999999754

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=96.36  E-value=0.0034  Score=54.04  Aligned_cols=54  Identities=20%  Similarity=0.126  Sum_probs=44.0

Q ss_pred             cHHHHHHHhcCcEEEEcCchHHHH-HHHHHHHhCCCeE------EEE---cCCcCCcccccccc
Q 023036           22 GADAQRRLSKSHILVCGMKGTVAE-FCKNIVLAGVGSL------TLM---DDRVVTEEAWSANF   75 (288)
Q Consensus        22 G~~~q~~L~~~~VlIiG~gglGse-iaknL~l~Gvg~i------~lv---D~d~v~~~nl~r~f   75 (288)
                      +...++++++++|.|+|.|+.|++ ++..|+.+|++.+      +|+   |....+.+++++++
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~  159 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRA  159 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHH
Confidence            567899999999999999999988 9999999999987      676   66555555555543

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PLN00203 glutamyl-tRNA reductase

Probab=96.35  E-value=0.011  Score=58.49  Aligned_cols=78  Identities=18%  Similarity=0.166  Sum_probs=53.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      |.+++|+|||+|.+|..++++|...|+.++++++.                      -..|++.+++.+.    .+.+..
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR----------------------s~era~~La~~~~----g~~i~~  317 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR----------------------SEERVAALREEFP----DVEIIY  317 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC----------------------CHHHHHHHHHHhC----CCceEe
Confidence            55799999999999999999999999999999865                      2225555554432    222222


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      ..  ++ ...+.+.++|+||.|+....
T Consensus       318 ~~--~~-dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        318 KP--LD-EMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             ec--Hh-hHHHHHhcCCEEEEccCCCC
Confidence            11  11 12456789999999975433

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.28  E-value=0.01  Score=48.34  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=51.0

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeecC
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKGD  112 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~~  112 (288)
                      |+|+|+|++|+.+|-.|..+|.. +++++...                       +++.+.+.=-.+ .+.-+-......
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~   56 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-----------------------RLEAIKEQGLTITGPDGDETVQPPI   56 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-----------------------HHHHHHHHCEEEEETTEEEEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-----------------------cHHhhhheeEEEEecccceeccccc
Confidence            78999999999999999998866 88877622                       233322221111 111000000000


Q ss_pred             CCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .........+.+|+||+|+-+.+....+..+...
T Consensus        57 ~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~   90 (151)
T PF02558_consen   57 VISAPSADAGPYDLVIVAVKAYQLEQALQSLKPY   90 (151)
T ss_dssp             EESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred             ccCcchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence            0000124567899999999887777777665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.27  E-value=0.018  Score=53.35  Aligned_cols=42  Identities=12%  Similarity=0.098  Sum_probs=34.3

Q ss_pred             ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.......++.++|.|+|+|.+|.++|+.|...|+. +..+|.
T Consensus       126 w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~  167 (312)
T PRK15469        126 WQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSR  167 (312)
T ss_pred             cCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            653333468899999999999999999999999985 777775

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.27  E-value=0.02  Score=53.20  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++..+|.|||+|.+|+.++..++..|+..+.|+|-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            45679999999999999999999999867999986

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.27  E-value=0.024  Score=52.34  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc---eeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RVSV  108 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v---~v~~  108 (288)
                      +|.|||+|.+|+.+|-.|+..|+ +.+.|+|-                      -+.|++..+--|+...+..   ++..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~a~g~a~DL~~~~~~~~~~~~~i   58 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV----------------------NEGVAEGEALDFHHATALTYSTNTKI   58 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHHHHHHHhhhccCCCCCEEE
Confidence            68999999999999999999998 57999985                      2234445555566544321   2333


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...     +.+.+++.|+||.+..
T Consensus        59 ~~~-----~y~~~~~aDivvitaG   77 (307)
T cd05290          59 RAG-----DYDDCADADIIVITAG   77 (307)
T ss_pred             EEC-----CHHHhCCCCEEEECCC
Confidence            322     2567889999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.031  Score=53.96  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |++++|+|+|.|++|.++|+.|+..|. .++++|.+
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~   37 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEK   37 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            678999999999999999999999996 59999873

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.22  E-value=0.044  Score=49.79  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=27.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|+|+|++|+.++..|+.+|. .++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r   31 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR   31 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            69999999999999999999994 6999886

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.20  E-value=0.019  Score=47.46  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|.|+|+|..|+.+|..|+..| .+++|++.+.-..+.+..+-.                    -...-|.+.+.... .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~--------------------n~~~~~~~~l~~~i-~   58 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ--------------------NPKYLPGIKLPENI-K   58 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS--------------------ETTTSTTSBEETTE-E
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC--------------------CCCCCCCcccCccc-c
Confidence            6899999999999999999999 678888764311111111000                    00011111111100 0


Q ss_pred             CCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .+...++.+++.|+||.+.-+...+..+.++...++.+.+++. .+-|+
T Consensus        59 ~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~-~~KG~  106 (157)
T PF01210_consen   59 ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS-ATKGF  106 (157)
T ss_dssp             EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE-TS-SE
T ss_pred             cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE-ecCCc
Confidence            1122356789999999999887776666666553335566554 33444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.09  E-value=0.02  Score=53.04  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++.+|.|||+|.+|+.++-.|+..|+..+.|+|-
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di   37 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV   37 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence            35679999999999999999999999888999996

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.08  E-value=0.014  Score=53.55  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=68.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~  111 (288)
                      +|.|||+|.+|+.++++|+..|. +++++|.+.-....+..        .   |-..+....+.++.. ++++-+...+.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~---g~~~~~~~~e~~~~~~~~dvvi~~v~~   69 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------E---GATGADSLEELVAKLPAPRVVWLMVPA   69 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------C---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence            69999999999999999999996 48888875322211110        1   211111122223332 35554444443


Q ss_pred             CC--CCcc---hhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 DL--SSLD---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~~--~~~~---~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ..  .+..   ...++.-++||+++ .++.....+.+.+++  .++.|+++...|.
T Consensus        70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~  123 (301)
T PRK09599         70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGG  123 (301)
T ss_pred             CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcC
Confidence            21  1111   12234456777775 455666678888988  8999999887774

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.08  E-value=0.033  Score=53.68  Aligned_cols=97  Identities=16%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +...+|+|+|+|.+|..+++.|...|.. ++++|.+.                      .+.+    .+++..+.+  ..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~----------------------~~~~----~~~~~~~~~--~~  279 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP----------------------ERAE----ELAEELPNT--LV  279 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH----------------------HHHH----HHHHHCCCC--eE
Confidence            5678999999999999999999998875 88888621                      1222    222222222  22


Q ss_pred             eecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          109 EKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       109 ~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ...+..+   +....++++|.||.++.+......+...|++  .+.+.+.+
T Consensus       280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~--~~~~~ii~  328 (453)
T PRK09496        280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKR--LGAKKVIA  328 (453)
T ss_pred             EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHH--hCCCeEEE
Confidence            3333322   1233467899999988776666667777887  55444433

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.02  E-value=0.029  Score=51.96  Aligned_cols=97  Identities=15%  Similarity=0.047  Sum_probs=60.8

Q ss_pred             HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036           25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        25 ~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v  104 (288)
                      ....|++++|.|||+|.+|..+|+||..+|+. +.+.|+.                     ++....  +   .+.  .+
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~---------------------~~s~~~--A---~~~--G~   60 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRP---------------------GKSFEV--A---KAD--GF   60 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECc---------------------chhhHH--H---HHc--CC
Confidence            34689999999999999999999999999985 6666531                     100000  0   010  11


Q ss_pred             eeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHH-HHHHhcCCCceEEEEee
Q 023036          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLIN-EKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~-~~~~~~~~~ip~i~~~~  158 (288)
                      .+  .      ...+.++..|+|+.+..+..++..++ +....++.+.-++.+..
T Consensus        61 ~v--~------sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hg  107 (335)
T PRK13403         61 EV--M------SVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHG  107 (335)
T ss_pred             EE--C------CHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCC
Confidence            11  1      13577889999999876655555554 34444344554554443

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.02  E-value=0.047  Score=50.12  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=27.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|+|+|.+|+.++.+|+..|.. ++++|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            699999999999999999999965 8888863

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.94  E-value=0.041  Score=50.76  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      .+|+|+|+|++|+-.+-.|.++| ..++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~   30 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV   30 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence            47999999999999999999999 7666653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.94  E-value=0.0094  Score=52.57  Aligned_cols=37  Identities=14%  Similarity=0.389  Sum_probs=34.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d   64 (288)
                      .+++.+|+|+|+|+.|..+++.|+..|+.  +|+|+|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            57889999999999999999999999999  99999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.93  E-value=0.047  Score=50.11  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|.|||+|.+|+.++..|+..|. .++++|.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~   35 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV   35 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            479999999999999999999996 5888885

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.92  E-value=0.051  Score=50.57  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      -..++.++|.|+|+|++|.++|+.|.-.| ..|.-.....                    .  +-+...+...+      
T Consensus       157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~--------------------~--~~~~~~~~~~~------  207 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ--------------------L--PPEEAYEYYAE------  207 (336)
T ss_pred             cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC--------------------C--chhhHHHhccc------
Confidence            45789999999999999999999999977 4343322100                    0  11111111111      


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEec-CChhhHHHHHH-HHHhcCCCceEEE
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINE-KCRKLSKRVAFYT  155 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~i~~-~~~~~~~~ip~i~  155 (288)
                          .    ...++++.++|+||+|. .+.+++-.+|+ .+.+++.+..++.
T Consensus       208 ----~----~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN  251 (336)
T KOG0069|consen  208 ----F----VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVN  251 (336)
T ss_pred             ----c----cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEe
Confidence                1    12367888999887775 67778878886 3444344444443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.92  E-value=0.03  Score=52.17  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      ..|++++|.|||+|.+|..+|+||..+|+ ++.+.+
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            46788999999999999999999999998 455544

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.90  E-value=0.018  Score=55.46  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+.+|+|+|+|.+|..+++.|...|+..++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67899999999999999999999999999999875

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.89  E-value=0.026  Score=54.47  Aligned_cols=125  Identities=10%  Similarity=0.050  Sum_probs=74.6

Q ss_pred             CCCHHHHHhhhhhhhhccHHHH----HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCC
Q 023036            5 ELTEQETALYDRQIRVWGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD   80 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl~G~~~q----~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~   80 (288)
                      +|+-.+.-.--+|-|+|+.+..    ..|++++|+|||+|+.|..-|.||--+|+. +++-               ++++
T Consensus         6 ~~~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvg---------------lr~~   69 (487)
T PRK05225          6 TLNLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLD-ISYA---------------LRKE   69 (487)
T ss_pred             cccHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccce-eEEe---------------cccc
Confidence            4554444444567789998776    789999999999999999999999999986 3321               1222


Q ss_pred             ccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        81 di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .|+..+++...+..+       ...+        ....+.++..|+|++...+........++...++.+.-+..+..+.
T Consensus        70 ~id~~~~s~~kA~~d-------GF~v--------~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFn  134 (487)
T PRK05225         70 AIAEKRASWRKATEN-------GFKV--------GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFN  134 (487)
T ss_pred             ccccccchHHHHHhc-------CCcc--------CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCce
Confidence            221112222221111       1111        1145678899999988755443333344555544555565554443

>PRK07680 late competence protein ComER; Validated

Probab=95.89  E-value=0.076  Score=47.89  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      +|.|||+|.+|+.+++.|...|.   ..++++|.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r   35 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR   35 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            59999999999999999999984   45666654

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.89  E-value=0.042  Score=51.08  Aligned_cols=76  Identities=13%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .++++|+|+|+.|...++.|. ..|+.+++|++.                      ...|++.+++++++..+ +++...
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~~  185 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTAA  185 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence            468999999999999999997 578899999865                      44578888888865432 333322


Q ss_pred             ecCCCCcchhhhccCcEEEEecCCh
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                           +...+.+.++|+||.|+.+.
T Consensus       186 -----~~~~~av~~aDiVvtaT~s~  205 (326)
T TIGR02992       186 -----TDPRAAMSGADIIVTTTPSE  205 (326)
T ss_pred             -----CCHHHHhccCCEEEEecCCC
Confidence                 12355678999999998653

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.89  E-value=0.034  Score=51.08  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             EEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eeeeeec
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSVEKG  111 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~~~~~  111 (288)
                      |.|||+|.+|+.+|-.|+..|+ .+++++|.                      -+.|++..+..|.+..+.. .......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~----------------------~~~~~~g~~~DL~~~~~~~~~~~i~~~   58 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV----------------------NEEKAKGDALDLSHASAFLATGTIVRG   58 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHhHHHhccccCCCeEEEC
Confidence            5799999999999999999997 56999996                      3335666666777765541 1111111


Q ss_pred             CCCCcchhhhccCcEEEEecCC
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                          .+.+.++++|+||+|...
T Consensus        59 ----~~~~~l~~aDiVIitag~   76 (300)
T cd00300          59 ----GDYADAADADIVVITAGA   76 (300)
T ss_pred             ----CCHHHhCCCCEEEEcCCC
Confidence                124578899999998753

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.86  E-value=0.053  Score=49.77  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr   39 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR   39 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            4689999999999999999999997 47888876

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.84  E-value=0.041  Score=50.91  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=56.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +-..++|+|+|+|..|..+++.+.+ .|+.++++++.                      ...|++.+++.+++...  .+
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g~--~~  177 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQGF--DA  177 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ce
Confidence            3457899999999999999997765 67889999875                      44578888888776422  22


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCCh
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ...     +...+.+.++|+||.++.+.
T Consensus       178 ~~~-----~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        178 EVV-----TDLEAAVRQADIISCATLST  200 (314)
T ss_pred             EEe-----CCHHHHHhcCCEEEEeeCCC
Confidence            322     12345678999998887654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.82  E-value=0.069  Score=49.40  Aligned_cols=30  Identities=13%  Similarity=0.052  Sum_probs=26.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|+|+|++|+.++..|+..| ..+++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r   31 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR   31 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence            5999999999999999999999 45788875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.80  E-value=0.022  Score=47.96  Aligned_cols=35  Identities=11%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCchH-HHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGT-VAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~ggl-GseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478999999999985 8889999999998 5888774

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.80  E-value=0.032  Score=50.59  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|+|+||.+..++-.|...|+.+++|++.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            358999999999999999999999999999875

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.79  E-value=0.053  Score=57.61  Aligned_cols=25  Identities=8%  Similarity=0.146  Sum_probs=22.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAG   54 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~G   54 (288)
                      +.++|+|+|+|.+|..++++|+..+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~  592 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVK  592 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCc
Confidence            5679999999999999999998753

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.77  E-value=0.051  Score=50.26  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc---ee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RV  106 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v---~v  106 (288)
                      ..+|.|||+|.+|+.+|-.|+..|.. +|.|+|-                      .+.|++..+.-|+...|..   ++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~----------------------~~~~~~g~a~Dl~~~~~~~~~~~v   60 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV----------------------VEDKLKGEAMDLQHGSAFLKNPKI   60 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHHHHHhhccCCCCEE
Confidence            35899999999999999999999985 6999985                      2224445555566555432   22


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ... .     +.+.++++|+||.|..
T Consensus        61 ~~~-~-----dy~~~~~adivvitaG   80 (312)
T cd05293          61 EAD-K-----DYSVTANSKVVIVTAG   80 (312)
T ss_pred             EEC-C-----CHHHhCCCCEEEECCC
Confidence            221 1     2345899999999654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.77  E-value=0.036  Score=50.42  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.+|..|+..|. .++++|.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~   34 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDI   34 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeC
Confidence            579999999999999999999996 5999985

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.76  E-value=0.13  Score=40.90  Aligned_cols=98  Identities=15%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ||.|+|+ |-+|.++++.+.. .|+.=.-.+|...   ++     + -..|+   |        +.+..-.  ..+... 
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~-----~-~g~d~---g--------~~~~~~~--~~~~v~-   58 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA-----K-VGKDV---G--------ELAGIGP--LGVPVT-   58 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST-----T-TTSBC---H--------HHCTSST---SSBEB-
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc-----c-ccchh---h--------hhhCcCC--cccccc-
Confidence            7999999 9999999999999 6765555566532   00     0 12233   2        1111111  122222 


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                          +..++.+..+|+||+.+ +++.....-++|.+  +++|++. ++.|+
T Consensus        59 ----~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~--~g~~~Vi-GTTG~  101 (124)
T PF01113_consen   59 ----DDLEELLEEADVVIDFT-NPDAVYDNLEYALK--HGVPLVI-GTTGF  101 (124)
T ss_dssp             ----S-HHHHTTH-SEEEEES--HHHHHHHHHHHHH--HT-EEEE-E-SSS
T ss_pred             ----hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHh--CCCCEEE-ECCCC
Confidence                22356666799999998 66777778888888  8899886 44443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.67  E-value=0.11  Score=43.14  Aligned_cols=93  Identities=24%  Similarity=0.227  Sum_probs=59.9

Q ss_pred             EEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        34 VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      |+|+|+ |.+|..+++.|...| .+++.+=.                      ...|.+.        .+  .++....+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------------------~~~~~~~--------~~--~~~~~~~d   47 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------------------SPSKAED--------SP--GVEIIQGD   47 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------------------SGGGHHH--------CT--TEEEEESC
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------------------Cchhccc--------cc--ccccceee
Confidence            789997 889999999999999 55666422                      1122222        44  45555555


Q ss_pred             CCCc--chhhhccCcEEEEecCC----hhhHHHHHHHHHhcCCCce-EEEEeeecc
Q 023036          113 LSSL--DGEFYDKFDVVVVSCCS----VTTKKLINEKCRKLSKRVA-FYTVDCRDS  161 (288)
Q Consensus       113 ~~~~--~~~~~~~~dvVi~~~~~----~~~~~~i~~~~~~~~~~ip-~i~~~~~G~  161 (288)
                      +.+.  ..+.++++|.||.+...    ......+-+.|++  .+++ ++..++.|.
T Consensus        48 ~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~--~~~~~~v~~s~~~~  101 (183)
T PF13460_consen   48 LFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKK--AGVKRVVYLSSAGV  101 (183)
T ss_dssp             TTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHH--TTSSEEEEEEETTG
T ss_pred             ehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccc--cccccceeeecccc
Confidence            5543  25567899999998753    3334566777777  6664 445455553

...

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.66  E-value=0.1  Score=46.68  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=26.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD~   63 (288)
                      .+|.|||+|.+|..++..|...|.  ..+.++|.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r   36 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP   36 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence            479999999999999999999984  34666654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.057  Score=49.25  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|..|+.+|.+++++|.. ++++|.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETT   37 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECC
Confidence            4899999999999999999999975 9999864

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.62  E-value=0.047  Score=50.30  Aligned_cols=77  Identities=13%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +....+++|+|+|..|...++.+.. .|+.++.++|.                      ...|++.+++++++.+.  .+
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~~--~~  177 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALGP--TA  177 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ee
Confidence            3456899999999999999999974 68888999875                      44578888888876432  22


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCCh
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      .  .    +..++.+.++|+||.|+.+.
T Consensus       178 ~--~----~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        178 E--P----LDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             E--E----CCHHHHhhcCCEEEEccCCC
Confidence            2  1    12355678999999998654

>PLN02602 lactate dehydrogenase

Probab=95.62  E-value=0.057  Score=50.78  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC---ceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~---v~v~  107 (288)
                      .+|.|||+|.+|+.+|-.|+..|+ .+|.|+|-                      .+.|++..+.-|+...|.   +++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi----------------------~~~~~~g~a~DL~~~~~~~~~~~i~   95 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV----------------------NPDKLRGEMLDLQHAAAFLPRTKIL   95 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCchhhHHHHHHHhhhhcCCCCEEE
Confidence            699999999999999999999998 57999985                      222344445555554332   3332


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..      .+.+.++++|+||.+..
T Consensus        96 ~~------~dy~~~~daDiVVitAG  114 (350)
T PLN02602         96 AS------TDYAVTAGSDLCIVTAG  114 (350)
T ss_pred             eC------CCHHHhCCCCEEEECCC
Confidence            21      12355899999999854

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.60  E-value=0.082  Score=47.88  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=27.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|..+++.|...|. .++++|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~   31 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR   31 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence            69999999999999999999996 5888886

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.57  E-value=0.09  Score=53.23  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.                      .+++.++    +.  .  ..++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~----------------------~~v~~~~----~~--g--~~v~~  448 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDP----------------------DHIETLR----KF--G--MKVFY  448 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCH----------------------HHHHHHH----hc--C--CeEEE
Confidence            57999999999999999999999986 89988732                      2333332    21  1  23333


Q ss_pred             cCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036          111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (288)
Q Consensus       111 ~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip  152 (288)
                      .+.++.   ...-++++++||+++++.+....+-..+|+...+++
T Consensus       449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~  493 (621)
T PRK03562        449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ  493 (621)
T ss_pred             EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence            333321   233466899999999998888888888887333343

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.55  E-value=0.076  Score=49.33  Aligned_cols=79  Identities=10%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...+++|+|+|+.|...+..+. ..|+.++.|+|.                      ...|++.+++.+++..+ +++..
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~  182 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV  182 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence            4678999999999998888775 568999999875                      34477777777765432 23333


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTT  136 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~  136 (288)
                      ..     ..++.++++|+||.|+.+...
T Consensus       183 ~~-----~~~~~~~~aDiVi~aT~s~~p  205 (325)
T PRK08618        183 VN-----SADEAIEEADIIVTVTNAKTP  205 (325)
T ss_pred             eC-----CHHHHHhcCCEEEEccCCCCc
Confidence            21     135567899999999876543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.51  E-value=0.068  Score=49.68  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=29.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ++|.|||+|.+|+.+|.+++.+|.. ++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999976 89999743

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.49  E-value=0.1  Score=52.55  Aligned_cols=93  Identities=14%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+|+|.|.+|..+++.|...|+. ++++|.|.                      .+++.+    ++.    ...++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~----------------------~~v~~~----~~~----g~~v~~  448 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDI----------------------SAVNLM----RKY----GYKVYY  448 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCH----------------------HHHHHH----HhC----CCeEEE
Confidence            57899999999999999999999986 89999732                      122222    222    123333


Q ss_pred             cCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       111 ~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .+..+   ....-++++|+||.+.++.+....+-..+|+...+.+.+
T Consensus       449 GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii  495 (601)
T PRK03659        449 GDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL  495 (601)
T ss_pred             eeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence            33332   123346789999999999888888888888733344443

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.046  Score=49.78  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             ccHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+......+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197          6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            4443445678889999995 7999999999999997 4777654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.48  E-value=0.15  Score=46.16  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV   55 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv   55 (288)
                      ...+|.|||+|.+|..++++|...|+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~   27 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANV   27 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC
Confidence            34589999999999999999999983

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.46  E-value=0.17  Score=44.06  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC--ceeeee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVSVE  109 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~--v~v~~~  109 (288)
                      +|.||| +|.+|+.+++.|+..| .+++++|.                      ...+++.+.+........  +.....
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~g~~~~~~   58 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR----------------------DLEKAEEAAAKALEELGHGGSDIKVT   58 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc----------------------CHHHHHHHHHHHHhhccccCCCceEE
Confidence            699997 8999999999999999 56777764                      222333333322111100  111111


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~  144 (288)
                      ..    ...+..+++|+||+|.-.......+.++.
T Consensus        59 ~~----~~~ea~~~aDvVilavp~~~~~~~l~~l~   89 (219)
T TIGR01915        59 GA----DNAEAAKRADVVILAVPWDHVLKTLESLR   89 (219)
T ss_pred             Ee----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence            11    12455778999999987665555554443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.46  E-value=0.085  Score=48.00  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999995 4888875

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.42  E-value=0.14  Score=45.10  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV   55 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv   55 (288)
                      +..+|.|||+|.+|..+++.|...|.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~   28 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSK   28 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999998873

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.41  E-value=0.15  Score=46.21  Aligned_cols=33  Identities=9%  Similarity=0.071  Sum_probs=26.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      +.+|.+||+|-+|..++++|...|.   .+|.++|.
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r   37 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL   37 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence            4589999999999999999999885   24665553

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.34  E-value=0.045  Score=50.08  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             EEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee----e
Q 023036           34 ILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS----V  108 (288)
Q Consensus        34 VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~----~  108 (288)
                      |||-| +|++|+|+++.|+..|..+|.++|.                      +.++--.+.+.+++..|+-++.    .
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~----------------------~E~~l~~l~~~l~~~~~~~~v~~~~~~   58 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDR----------------------DENKLYELERELRSRFPDPKVRFEIVP   58 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-----------------------HHHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCC----------------------ChhHHHHHHHHHhhcccccCcccccCc
Confidence            67887 6679999999999999999999997                      4444455566665554442222    3


Q ss_pred             eecCCCCc--chhhhc--cCcEEEEec
Q 023036          109 EKGDLSSL--DGEFYD--KFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~--~~dvVi~~~  131 (288)
                      ...++.+.  ....++  +.|+|+-+.
T Consensus        59 vigDvrd~~~l~~~~~~~~pdiVfHaA   85 (293)
T PF02719_consen   59 VIGDVRDKERLNRIFEEYKPDIVFHAA   85 (293)
T ss_dssp             -CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred             eeecccCHHHHHHHHhhcCCCEEEECh
Confidence            34444332  133445  677887654

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=95.24  E-value=0.14  Score=46.92  Aligned_cols=114  Identities=12%  Similarity=0.105  Sum_probs=61.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|.|||+|.+|..++.+|+..|. .++++|.+.-....+...           |...+....+.+++  .++-+...+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~-----------g~~~~~s~~~~~~~--aDvVi~~vp~   67 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDK-----------GATPAASPAQAAAG--AEFVITMLPN   67 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHc-----------CCcccCCHHHHHhc--CCEEEEecCC
Confidence            379999999999999999999995 689988743222221110           11111111111111  1222222222


Q ss_pred             CC--CCc---chh---hhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 DL--SSL---DGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~~--~~~---~~~---~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ..  ...   ...   .++.-.+||+++ .++....++.+.+.+  .++.|+++...|.
T Consensus        68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~  124 (296)
T PRK15461         68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRT  124 (296)
T ss_pred             HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCC
Confidence            10  000   001   122233555544 456667778888877  7888888877664

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.19  E-value=0.059  Score=50.11  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             hhhhhhhh--ccHHHH--HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           13 LYDRQIRV--WGADAQ--RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        13 rYdRqirl--~G~~~q--~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++|.+-  |-....  ..|..++|.|||+|.+|+.+++-|.-.|+. +..+|+
T Consensus       120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~  173 (324)
T COG0111         120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP  173 (324)
T ss_pred             hhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence            35555543  544212  267899999999999999999999999988 777787

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.12  E-value=0.14  Score=45.92  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~----Gv------g~i~lvD~d   64 (288)
                      ++|++.||+++|+|+.|.-|++.|+.+    |+      ++|.++|.+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~   68 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK   68 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence            369999999999999999999999999    99      899999985

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.12  E-value=0.22  Score=39.19  Aligned_cols=95  Identities=19%  Similarity=0.184  Sum_probs=52.8

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ||.|+| .|-+|.++++.|...-- .-+.++..               ..+.   |+.-.+...    .....-++....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~---g~~~~~~~~----~~~~~~~~~~~~   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSA---GKPLSEVFP----HPKGFEDLSVED   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTT---TSBHHHTTG----GGTTTEEEBEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------cccc---CCeeehhcc----ccccccceeEee
Confidence            699999 88899999999988322 22333332               1112   443222111    111122233322


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEe
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~  157 (288)
                           .+.+.+++.|+||.|..+.........+ .+  .++++|+..
T Consensus        59 -----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~--~g~~ViD~s   97 (121)
T PF01118_consen   59 -----ADPEELSDVDVVFLALPHGASKELAPKL-LK--AGIKVIDLS   97 (121)
T ss_dssp             -----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HH--TTSEEEESS
T ss_pred             -----cchhHhhcCCEEEecCchhHHHHHHHHH-hh--CCcEEEeCC
Confidence                 2345568999999998776655554444 55  677777543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.096  Score=48.10  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ +|+|.++++.|+..|. ++.+++.
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R   46 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR   46 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            467789999984 5899999999999996 5777654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.11  E-value=0.12  Score=47.88  Aligned_cols=31  Identities=16%  Similarity=0.122  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|+|+|.+|+.++.+|+..|. .++++|.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r   35 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR   35 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            379999999999999999999995 4888876

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.15  Score=49.66  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677999999999999999999999975 9999863

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.07  E-value=0.26  Score=44.44  Aligned_cols=33  Identities=12%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|+|+|++|..++..|+..|. +++++|.
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R  148 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR  148 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46789999999999999999999996 7999874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.06  E-value=0.26  Score=44.79  Aligned_cols=39  Identities=28%  Similarity=0.347  Sum_probs=35.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEcCCc
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRV   65 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~----Gv------g~i~lvD~d~   65 (288)
                      ++|++.+|+++|+|+.|.-|++.|+.+    |+      ++|.++|.+-
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G   69 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG   69 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence            578899999999999999999999998    99      6999999754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.06  E-value=0.22  Score=44.49  Aligned_cols=29  Identities=14%  Similarity=0.286  Sum_probs=24.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC---CeEEEE
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLM   61 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lv   61 (288)
                      +|.+||+|.+|..++++|...|.   ..++++
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~   33 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA   33 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence            69999999999999999999985   245555

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.05  E-value=0.15  Score=46.42  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=28.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 47888864

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.12  Score=45.67  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r   39 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADL   39 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999995 68999999999999975 777764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.33  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.153  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..++|.|||+|..|+.+|.+|+.+|. .++++|.
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~   35 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDV   35 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            34689999999999999999999996 5889886

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.03  E-value=0.25  Score=42.60  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|++++|+|+|+|.+|..++++|...|. +++++|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4788999999999999999999999996 57888864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.03  E-value=0.024  Score=47.94  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .....|.+++|.|+|+|.+|.++|+-|...|+ ++..+|...
T Consensus        29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~   69 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP   69 (178)
T ss_dssp             TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred             CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence            33457899999999999999999999999998 688888733

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.14  Score=46.53  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|+.+|..|+..|. .++++|.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVS   35 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999997 59999864

>PRK07574 formate dehydrogenase; Provisional

Probab=95.02  E-value=0.09  Score=50.08  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|.++|+.|...|+. +..+|.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr  223 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDR  223 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECC
Confidence            468999999999999999999999999985 777775

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.02  E-value=0.24  Score=45.36  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.+|..++..|.+.+.++|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            48999999999999999999998769999986

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.02  E-value=0.13  Score=47.86  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .++++|+|+|+.|...+..+.. .|+.+++|++.                      ...|++.+++.+++..+ +++...
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~g-~~v~~~  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAELG-IPVTVA  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccC-ceEEEe
Confidence            4689999999999999999985 57899999865                      44477778877765332 333322


Q ss_pred             ecCCCCcchhhhccCcEEEEecCCh
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      .     ...+.+.++|+||.|+.+.
T Consensus       189 ~-----d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        189 R-----DVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             C-----CHHHHHccCCEEEEeeCCC
Confidence            1     1345677899999988653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.99  E-value=0.25  Score=44.73  Aligned_cols=31  Identities=13%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      +|.|||+|.+|..+++.|...|.   .++.++|.
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r   36 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS   36 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence            69999999999999999999983   45666654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=94.95  E-value=0.098  Score=51.41  Aligned_cols=120  Identities=11%  Similarity=0.096  Sum_probs=72.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc---HHHHHHHHHhhh-CCCceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT---IAEVCCDSLKDF-NPMVRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~---Ka~~~~~~l~~l-Np~v~v~  107 (288)
                      .+|.+||+|..|+.+|+||+..|.. ++++|.+.=....+...    ....   |..   -+....+..+.+ .|++-+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~   78 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII   78 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999999999975 89988643221221110    0000   100   112223333333 3555444


Q ss_pred             eeecCC--CCc---chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          108 VEKGDL--SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       108 ~~~~~~--~~~---~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .....-  ++.   ....++.=|+||+++. +++...++.+.+.+  +++.|+.+...|.
T Consensus        79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG  136 (493)
T PLN02350         79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGG  136 (493)
T ss_pred             ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCC
Confidence            433221  111   1223455689998865 46777788899988  9999999998874

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.95  E-value=0.042  Score=39.85  Aligned_cols=54  Identities=17%  Similarity=0.166  Sum_probs=39.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      ||+|||.|.+|+|+|..|...|. +++|++...-        ++   ...   +..-++.+.+.+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~---~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGF---DPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTS---SHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhc---CHHHHHHHHHHHHHCC
Confidence            68999999999999999999995 6899886221        11   112   4444566677777774

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=94.94  E-value=0.1  Score=49.64  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~  230 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR  230 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence            469999999999999999999999999986 677775

>PRK14982 acyl-ACP reductase; Provisional

Probab=94.94  E-value=0.15  Score=47.79  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHH-hCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l-~Gvg~i~lvD~   63 (288)
                      .|++++|+|+|+ |.+|+++++.|.. .|+.++++++.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R  189 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR  189 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence            578899999998 7999999999985 58999999875

>PRK09242 tropinone reductase; Provisional

Probab=94.93  E-value=0.16  Score=44.71  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|++++++|.|+ |++|.++++.|+..|. ++.+++.+                      ..+.+.+.+.+.+.+|..++
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~   62 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREV   62 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeE
Confidence            467889999995 6999999999999996 47777641                      11334445556666666666


Q ss_pred             eeeecCCCCcc---------hhhhccCcEEEEec
Q 023036          107 SVEKGDLSSLD---------GEFYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~---------~~~~~~~dvVi~~~  131 (288)
                      ..+..++.+..         .+.+...|+||.+.
T Consensus        63 ~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   96 (257)
T PRK09242         63 HGLAADVSDDEDRRAILDWVEDHWDGLHILVNNA   96 (257)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66655554321         11234577777765

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.92  E-value=0.21  Score=49.82  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.||+|+|+|.+|.++++.|...|.. ++++|.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~  448 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIET  448 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCC-EEEEEC
Confidence            57999999999999999999999975 899987

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.91  E-value=0.22  Score=45.24  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|.+|..+|.+|+..|.. ++++|.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCC
Confidence            4799999999999999999999964 8999874

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.91  E-value=0.083  Score=48.38  Aligned_cols=115  Identities=11%  Similarity=0.055  Sum_probs=65.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~  111 (288)
                      +|.|||+|.+|+.++++|+..|. .++++|.+.-....+...           |...+....+....+ .+++-+...+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~~~dvIi~~vp~   69 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLSAPRVVWVMVPH   69 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcCCCCEEEEEcCc
Confidence            69999999999999999999995 478888654322222211           111111111111111 24443333332


Q ss_pred             CC-CCcc---hhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 DL-SSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~~-~~~~---~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .. .+..   ...++.=++||+++.. +....++.+.+.+  .++.|+.+...|.
T Consensus        70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg  122 (298)
T TIGR00872        70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGG  122 (298)
T ss_pred             hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCC
Confidence            21 1111   1223444788887543 4555666777777  8899999988864

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.91  E-value=0.062  Score=52.49  Aligned_cols=120  Identities=11%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~  111 (288)
                      .|.|||+|..|..+|.||+..|. +++++|.+.-....+...+.- ..     +-.-+....+..+.+ .|++-+...+.
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~-g~-----~~~~~~s~~e~v~~l~~~dvIil~v~~   73 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAK-GK-----KIVGAYSIEEFVQSLERPRKIMLMVKA   73 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccC-CC-----CceecCCHHHHHhhcCCCCEEEEECCC
Confidence            48899999999999999999997 588988754332222211000 00     000111122333333 35544443332


Q ss_pred             C--CCCc---chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 D--LSSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~--~~~~---~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .  +.+.   ....++.=|+||++.. .+....+..+.+.+  +++.|+.+.+.|.
T Consensus        74 ~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG  127 (467)
T TIGR00873        74 GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGG  127 (467)
T ss_pred             cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCC
Confidence            1  1111   1223455689998874 44555555667877  8999999998874

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.90  E-value=0.2  Score=46.86  Aligned_cols=107  Identities=14%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|+|+|+|+.|+.++..|+..|  .++++..+.-....++..-. .....   +.         -..+.+.  +...  
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l---~~---------~~~l~~~--i~~t--   68 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYL---GN---------DVVLSDT--LRAT--   68 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccC---CC---------CcccCCC--eEEE--
Confidence            57999999999999999999998  35655432211111111100 00000   00         0011111  1111  


Q ss_pred             CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         ....+.++++|+||++.-+...+..+.++....+.+.+++... .|+
T Consensus        69 ---~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~-kGi  114 (341)
T PRK12439         69 ---TDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV-KGL  114 (341)
T ss_pred             ---CCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE-eCC
Confidence               1123456789999999987766666666554433455565443 354

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=94.90  E-value=0.059  Score=47.44  Aligned_cols=78  Identities=22%  Similarity=0.315  Sum_probs=57.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +.+++++++| +||+|-+++|.|...|+....|.|.               .+.+         .+..+|++.||.+++.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En~---------~a~akL~ai~p~~~v~   58 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EENP---------EAIAKLQAINPSVSVI   58 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhCH---------HHHHHHhccCCCceEE
Confidence            4577888876 9999999999999999997777654               1111         3456899999999999


Q ss_pred             eeecCCCCcc---------hhhhccCcEEEEe
Q 023036          108 VEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       108 ~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      .+..++....         -..+...|++|..
T Consensus        59 F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINg   90 (261)
T KOG4169|consen   59 FIKCDVTNRGDLEAAFDKILATFGTIDILING   90 (261)
T ss_pred             EEEeccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence            9988876421         1224567888764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.90  E-value=0.19  Score=45.52  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999997 58998863

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.89  E-value=0.1  Score=48.14  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      +|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            69999999999999999999996 77999995

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.83  E-value=0.23  Score=45.27  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999995 58999863

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.83  E-value=0.14  Score=47.08  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~   34 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDAD   34 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCC
Confidence            369999999999999999999997 59999975

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=94.82  E-value=0.049  Score=53.22  Aligned_cols=120  Identities=12%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC--cHHHHHHHHHhhh-CCCceeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--TIAEVCCDSLKDF-NPMVRVSV  108 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~--~Ka~~~~~~l~~l-Np~v~v~~  108 (288)
                      ++|.|||+|..|+.+|.||+..|. +++++|.+.-....+...    ...-   |.  ..+....+.++.+ .|++-+..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~---g~~i~~~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEG---NTRVKGYHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhc---CCcceecCCHHHHHhcCCCCCEEEEE
Confidence            479999999999999999999997 599998643322222110    0000   10  0111223334433 35433333


Q ss_pred             eecC--CCCc---chhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          109 EKGD--LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       109 ~~~~--~~~~---~~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ....  +.+.   ....++.-|+||++... +....+..+.+.+  +++.|+.+.+.|.
T Consensus        74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG  130 (470)
T PTZ00142         74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGG  130 (470)
T ss_pred             eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCC
Confidence            2211  1111   12335556899988654 5555566678878  8999999998874

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.81  E-value=0.15  Score=48.67  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      +...++.||+|+|.|.+|.++++.|...|. .++++|++.++.. .       ++     |                   
T Consensus       235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~-------~~-----g-------------------  281 (393)
T PRK10537        235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-L-------PD-----D-------------------  281 (393)
T ss_pred             hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-c-------cC-----C-------------------
Confidence            444557899999999999999999998886 4888887522100 0       00     1                   


Q ss_pred             eeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcC
Q 023036          106 VSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS  148 (288)
Q Consensus       106 v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~  148 (288)
                      ......+..+   +...-+++++.||.++++.+....+-..+|+.+
T Consensus       282 ~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~  327 (393)
T PRK10537        282 ADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS  327 (393)
T ss_pred             CcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence            1122223222   123346688899998887777666767777733

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.80  E-value=0.1  Score=48.54  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gv-g-----~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~  103 (288)
                      .+|.|||+ |.+|+.+|-.|+..|+ +     +|.|+|-.               +     .+.|++..+.-|+... |.
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~---------------~-----~~~~a~g~a~Dl~~~~~~~   63 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIP---------------P-----AMKALEGVAMELEDCAFPL   63 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecC---------------C-----cccccchHHHHHhhccccc
Confidence            47999998 9999999999999997 4     58888851               1     1223444455555554 33


Q ss_pred             ce-eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VR-VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~-v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .. +...     ..+.+.++++|+||.+..
T Consensus        64 ~~~~~i~-----~~~~~~~~daDvVVitAG   88 (323)
T TIGR01759        64 LAGVVAT-----TDPEEAFKDVDAALLVGA   88 (323)
T ss_pred             cCCcEEe-----cChHHHhCCCCEEEEeCC
Confidence            22 1111     124577899999999865

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.80  E-value=0.19  Score=46.33  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +.+|+|+|+|++|+-++..|+.+| ..+++++.+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            468999999999999999999999 4588887654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.78  E-value=0.24  Score=45.50  Aligned_cols=33  Identities=12%  Similarity=0.102  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|.|+|+|.+|+.++++|+..|. .++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999995 58888864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.74  E-value=0.057  Score=39.90  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+..++++|+|+|..|.-++..|...|...+.++|.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            478899999999999999999999998889999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.70  E-value=0.23  Score=45.13  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            58999999999999999999996 588888653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.70  E-value=0.24  Score=45.25  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678999999999999999999999997 7888875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.69  E-value=0.18  Score=48.65  Aligned_cols=36  Identities=8%  Similarity=0.127  Sum_probs=32.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+.+++|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d  244 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD  244 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            3588999999999999999999999998 69998863

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.67  E-value=0.086  Score=47.23  Aligned_cols=39  Identities=18%  Similarity=0.276  Sum_probs=35.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC----------eEEEEcCCc
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG----------SLTLMDDRV   65 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg----------~i~lvD~d~   65 (288)
                      ++|++.||+++|+|+.|.-+++.|..+|+.          +|.++|.+-
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G   69 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG   69 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence            478999999999999999999999999997          899999754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PLN02240 UDP-glucose 4-epimerase

Probab=94.66  E-value=0.41  Score=44.22  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~   37 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN   37 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999985 7899999999999995 5888774

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.66  E-value=0.23  Score=43.34  Aligned_cols=62  Identities=24%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +++++|.| .|++|.++++.|+..|. ++.+++.+.                      .+.+.+...+.+.+|..++...
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~   58 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT----------------------DRLEELKAELLARYPGIKVAVA   58 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence            56789998 67899999999999995 577776521                      1233444455555666666666


Q ss_pred             ecCCCC
Q 023036          110 KGDLSS  115 (288)
Q Consensus       110 ~~~~~~  115 (288)
                      ..++.+
T Consensus        59 ~~D~~~   64 (248)
T PRK08251         59 ALDVND   64 (248)
T ss_pred             EcCCCC
Confidence            555543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.58  E-value=0.21  Score=46.30  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999995 58898863

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.57  E-value=0.3  Score=47.02  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|+|+|+|.+|..+++.|...|.. ++++|.+                      ..+++.+.    + .  ..+.....+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~----------------------~~~~~~~~----~-~--~~~~~~~gd   51 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTD----------------------EERLRRLQ----D-R--LDVRTVVGN   51 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEECC----------------------HHHHHHHH----h-h--cCEEEEEeC
Confidence            799999999999999999999975 7888751                      11222222    1 0  123333333


Q ss_pred             CCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          113 LSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       113 ~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ..+.   ...-++++|.||.++.+......+...+++
T Consensus        52 ~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~   88 (453)
T PRK09496         52 GSSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKS   88 (453)
T ss_pred             CCCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence            3221   122367899999988776666666677777

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.57  E-value=0.27  Score=48.38  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            479999999999999999999997 59999873

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.57  E-value=0.14  Score=48.43  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +...+|+|+|+|.+|..+++.+...|+ +++++|.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~  198 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDI  198 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEEC
Confidence            567889999999999999999999998 5999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.53  E-value=0.29  Score=46.13  Aligned_cols=37  Identities=11%  Similarity=0.184  Sum_probs=29.2

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++..+|+|.|+ |-+|+.+++.|+..|-.++..+|.
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            3566778999995 779999999999985335777774

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.52  E-value=0.16  Score=46.59  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=28.2

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |.|||+|.+|+-++-.|+..|..+++++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999987689999974

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.51  E-value=0.28  Score=46.14  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=27.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|||+|.+|..+++.|...|. .+.++|.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~   31 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY   31 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence            369999999999999999999997 4677765

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.48  E-value=0.36  Score=45.71  Aligned_cols=109  Identities=10%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC--
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN--  101 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN--  101 (288)
                      ...+|.|+|+|+-|+.+|..|+..|.      ..++++..+               +++  .++.-++.+.+.  ..|  
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~---------------~~~--~~~~~~~~in~~--~~N~~   70 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLE---------------EIV--EGEKLSDIINTK--HENVK   70 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEec---------------ccc--cchHHHHHHHhc--CCCcc
Confidence            45689999999999999999999884      456666432               111  022222222211  112  


Q ss_pred             --CCceeeeeecCC--CCcchhhhccCcEEEEecCChhhHHHHHHHHH--hcCCCceEEEEeeecc
Q 023036          102 --PMVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR--KLSKRVAFYTVDCRDS  161 (288)
Q Consensus       102 --p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~--~~~~~ip~i~~~~~G~  161 (288)
                        |.++.   +..+  .....+.+++.|+||.+.-+...+..+.++..  ..+.+.++|. .+-|+
T Consensus        71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS-~aKGI  132 (365)
T PTZ00345         71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAIS-LTKGI  132 (365)
T ss_pred             cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEE-EeCCc
Confidence              22221   1111  11124567889999999877666655555543  2223444443 34453

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.47  E-value=0.3  Score=47.31  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+||| +|++|..+++.|...|. .++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            699997 89999999999999996 58888753

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=94.46  E-value=0.27  Score=44.06  Aligned_cols=34  Identities=6%  Similarity=0.055  Sum_probs=26.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      .+.+|.|||+|.+|+.+++.|...|.   .++.++|.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~   38 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP   38 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence            34689999999999999999999873   23555544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.45  E-value=0.16  Score=40.68  Aligned_cols=81  Identities=10%  Similarity=0.077  Sum_probs=44.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ...+|.|||+|-+|..+++.|..+|.. +.-+-                       .  |....++++.+.-+...+.. 
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~-----------------------s--rs~~sa~~a~~~~~~~~~~~-   61 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHE-VVGVY-----------------------S--RSPASAERAAAFIGAGAILD-   61 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSE-EEEES-----------------------S--CHH-HHHHHHC--TT------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE-----------------------e--CCcccccccccccccccccc-
Confidence            456899999999999999999999953 33221                       1  22234555555544432221 


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHH
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~  144 (288)
                             ..+.+..+|+|++++-+........+++
T Consensus        62 -------~~~~~~~aDlv~iavpDdaI~~va~~La   89 (127)
T PF10727_consen   62 -------LEEILRDADLVFIAVPDDAIAEVAEQLA   89 (127)
T ss_dssp             -------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred             -------cccccccCCEEEEEechHHHHHHHHHHH
Confidence                   2356778999999985544444444444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.40  E-value=0.47  Score=43.72  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999878999996

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.40  E-value=0.074  Score=48.72  Aligned_cols=115  Identities=10%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeeeec
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~~~  111 (288)
                      +|.|||+|.+|..++++|...|. .++++|.+.-....+.        +.   |...+....+.+++. ++++-+...+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~---g~~~~~s~~~~~~~~~~advVi~~vp~   69 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG--------KL---GITARHSLEELVSKLEAPRTIWVMVPA   69 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH--------HC---CCeecCCHHHHHHhCCCCCEEEEEecC
Confidence            69999999999999999999996 4888886432111111        01   211111112222221 23343433332


Q ss_pred             C-C-CCcchh---hhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 D-L-SSLDGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~-~-~~~~~~---~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      . . .+...+   .++.=.+||+++ .++.....+.+.+.+  +++.|+++...|.
T Consensus        70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~  123 (299)
T PRK12490         70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGG  123 (299)
T ss_pred             chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCC
Confidence            2 0 011111   133335777774 456667777888877  8888998777765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=94.36  E-value=0.23  Score=44.52  Aligned_cols=90  Identities=10%  Similarity=-0.027  Sum_probs=51.9

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+|.|+|+ |.+|..+++.+... ++.-..++|.+.-.              .   ...             ....+..+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--------------~---~~~-------------~~~~i~~~   51 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--------------L---VGQ-------------GALGVAIT   51 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--------------c---ccc-------------CCCCcccc
Confidence            37999999 99999999988763 55545556653211              0   000             00011110


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                           +..++.++++|+||+++ ++.....+...|.+  +++|++.+ +.|
T Consensus        52 -----~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~--~G~~vvig-ttG   93 (257)
T PRK00048         52 -----DDLEAVLADADVLIDFT-TPEATLENLEFALE--HGKPLVIG-TTG   93 (257)
T ss_pred             -----CCHHHhccCCCEEEECC-CHHHHHHHHHHHHH--cCCCEEEE-CCC
Confidence                 11233445678888776 34444667777777  78888844 444

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=94.35  E-value=0.24  Score=47.17  Aligned_cols=76  Identities=20%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~------i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~  103 (288)
                      .+|.|+|+ |.+|+.+|-.|+..|+-.      ++|+|-                 |+   .+.|++..+--|+..- |.
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~---~~~~a~g~a~DL~d~a~~~  104 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ER---SKEALEGVAMELEDSLYPL  104 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------Cc---cchhhhHHHHHHHHhhhhh
Confidence            48999999 999999999999999854      666654                 22   4445666666666554 43


Q ss_pred             c-eeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 V-RVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v-~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      . .+....     .+.+.+++.|+||.+..
T Consensus       105 ~~~v~i~~-----~~y~~~kdaDIVVitAG  129 (387)
T TIGR01757       105 LREVSIGI-----DPYEVFEDADWALLIGA  129 (387)
T ss_pred             cCceEEec-----CCHHHhCCCCEEEECCC
Confidence            2 222221     23577899999999864

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.33  E-value=0.48  Score=47.35  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=26.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..++.|+|.|+ |++|..+++.|+..|.. +++++.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~R  112 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVR  112 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence            35667889985 79999999999999964 665543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.31  E-value=0.25  Score=44.13  Aligned_cols=23  Identities=9%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV   55 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv   55 (288)
                      +|.|||+|.+|..+++.|...|.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~   24 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPA   24 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999885

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.28  E-value=0.55  Score=44.05  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=59.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh--CC-
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NP-  102 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l--Np-  102 (288)
                      +|.|+|+|+.|+.+|..|+..|.       .+++++..+               +++  .+..    ..+.+++-  |+ 
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~--~~~~----~~~~in~~~~n~~   59 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEI--EGRN----LTEIINTTHENVK   59 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------ccc--CCHH----HHHHHHhcCCCcc
Confidence            58999999999999999999883       457776531               111  0111    12222221  21 


Q ss_pred             ---CceeeeeecCC--CCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036          103 ---MVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (288)
Q Consensus       103 ---~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~  162 (288)
                         .++.   +..+  .....+.+++.|+||.+.-+...+..+.++...++.+.++|. .+-|+.
T Consensus        60 ylpgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs-~tKGie  120 (342)
T TIGR03376        60 YLPGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAIS-CIKGLE  120 (342)
T ss_pred             ccCCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE-EeCCcc
Confidence               1111   1111  112345678999999998776665555555433335566655 456643

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.27  E-value=0.4  Score=46.42  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|+|+|+|+.|..+|+.|...|. ++++.|..
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~   32 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN   32 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            479999999999999999999996 58998863

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.27  E-value=0.092  Score=52.14  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            567899999999999999999999999 8999864

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.27  E-value=0.37  Score=44.62  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      |++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            5688999999999999999999999974 54444

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.18  E-value=0.48  Score=44.90  Aligned_cols=32  Identities=16%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            6799999 99999999999999995 59999864

>cd00704 MDH Malate dehydrogenase

Probab=94.12  E-value=0.084  Score=49.11  Aligned_cols=33  Identities=21%  Similarity=0.160  Sum_probs=29.2

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEcCC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~------i~lvD~d   64 (288)
                      .+|+|+|+ |.+|+.++..|+..|+-.      +.|+|-.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999999 999999999999988865      9999873

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.08  E-value=0.39  Score=46.94  Aligned_cols=39  Identities=18%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +...-++.++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            33445677899999999999999999999998 7899885

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.06  E-value=0.4  Score=45.93  Aligned_cols=39  Identities=15%  Similarity=0.054  Sum_probs=31.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~   72 (288)
                      +|.|||+|-+|..+|.+|+..|. +++++|.+.-....+.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~   40 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLN   40 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhh
Confidence            69999999999999999999997 4889987544333343

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.05  E-value=0.43  Score=43.21  Aligned_cols=36  Identities=6%  Similarity=0.096  Sum_probs=26.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d   64 (288)
                      +...+|.|||+|.+|..++++|...  |+.-..++|.+
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~   41 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD   41 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence            3457899999999999999999863  54433355653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=94.05  E-value=0.34  Score=43.69  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhC--CCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~G--vg~i~lvD~d   64 (288)
                      +|.|||+|.+|..+++.|...+  +.-+.++|.+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            7999999999999999998764  4444566654

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.04  E-value=0.39  Score=43.30  Aligned_cols=31  Identities=13%  Similarity=0.033  Sum_probs=27.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      +|.|||+|.+|..+++.|...|.. .++.+|.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~   33 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH   33 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            699999999999999999999973 5777775

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.03  E-value=0.14  Score=47.40  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      .+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi   33 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI   33 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence            3799999999999999999999999 9999996

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=93.95  E-value=0.15  Score=50.05  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++++|+|+||+|..+++.|+..|. +++++|.
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R  363 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR  363 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            567899999999999999999999998 7888764

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.94  E-value=0.31  Score=43.05  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~   50 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI   50 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence            456789999997 5 7999999999999975 777664

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.94  E-value=0.15  Score=45.79  Aligned_cols=30  Identities=20%  Similarity=0.145  Sum_probs=26.7

Q ss_pred             EEEEcC-chHHHHHHHHHHHhC--C-CeEEEEcC
Q 023036           34 ILVCGM-KGTVAEFCKNIVLAG--V-GSLTLMDD   63 (288)
Q Consensus        34 VlIiG~-gglGseiaknL~l~G--v-g~i~lvD~   63 (288)
                      |.|||+ |.+|..++..|+..|  . .+++|+|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~   34 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI   34 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence            579999 899999999999998  4 68999985

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.34  Score=43.06  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            367889999996 7999999999999997 5777764

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.75  E-value=0.22  Score=43.70  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r   38 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR   38 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999995 6899999999999997 4777764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.67  E-value=0.15  Score=47.31  Aligned_cols=32  Identities=16%  Similarity=0.061  Sum_probs=28.8

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg------~i~lvD~   63 (288)
                      .+|.|+|+ |.+|+.+|-.|+..|+-      ++.|+|-
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            58999999 99999999999999984      5999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.63  E-value=0.51  Score=45.42  Aligned_cols=35  Identities=11%  Similarity=-0.101  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      -.+|.|||+|-+|..+|.+|+..|. +++.+|.+.-
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHH
Confidence            3679999999999999999999994 5888886443

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.62  E-value=0.2  Score=43.59  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++.+++|.|+ |++|..+++.|...|. ++.++|.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r   37 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL   37 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999997 8999999999999996 5888875

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.62  E-value=0.24  Score=43.15  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            56789999995 68999999999999976 8888763

>PRK07062 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.42  Score=42.22  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|.|+ +++|.++++.|+..|.. +.+++.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r   40 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGR   40 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            56789999996 58999999999999975 777765

>PLN00106 malate dehydrogenase

Probab=93.57  E-value=0.19  Score=46.74  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~   65 (288)
                      ...+|+|+|+ |.+|+.++-.|+..|. +.+.|+|-..
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4579999999 9999999999998887 5799999744

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=93.55  E-value=0.31  Score=44.58  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=64.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|.+||+|-+|..++++|...|. .++++|.+. ..+.     +.   +.   |...+....+.++  ..++-+...+.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~-----~~---~~---g~~~~~s~~~~~~--~advVi~~v~~~   66 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADE-----LL---SL---GAVSVETARQVTE--ASDIIFIMVPDT   66 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHH-----HH---Hc---CCeecCCHHHHHh--cCCEEEEeCCCh
Confidence            59999999999999999999996 578887643 1111     11   11   3222222222221  223333333322


Q ss_pred             C--CCc---c---hhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          113 L--SSL---D---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       113 ~--~~~---~---~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .  .+.   .   ......-.+||+++ .++...+.+.+.+.+  +++.|+++-..|
T Consensus        67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsG  121 (292)
T PRK15059         67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSG  121 (292)
T ss_pred             HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCC
Confidence            0  000   0   00112235666664 567778889999988  889999887666

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.46  E-value=0.56  Score=45.56  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +-+.+++|+|+|.|..|..+|+.|...|. .+++.|..
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   46 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK   46 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34567899999999999999999999997 59998863

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.43  E-value=0.38  Score=43.44  Aligned_cols=79  Identities=28%  Similarity=0.352  Sum_probs=58.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ++..+++|-|+ +|+|-|+|+.|+.-|.. +.|+-.                      -+.|-+.+++.|+... .+++.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~   59 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVAR----------------------REDKLEALAKELEDKT-GVEVE   59 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence            56789999995 58999999999999966 666543                      3457888999999888 78888


Q ss_pred             eeecCCCCcc------hhhh---ccCcEEEEec
Q 023036          108 VEKGDLSSLD------GEFY---DKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~------~~~~---~~~dvVi~~~  131 (288)
                      +.+.++.+.+      .+..   -..|+.|.+.
T Consensus        60 vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA   92 (265)
T COG0300          60 VIPADLSDPEALERLEDELKERGGPIDVLVNNA   92 (265)
T ss_pred             EEECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence            8888876531      1111   1478887753

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.36  E-value=0.63  Score=42.40  Aligned_cols=32  Identities=9%  Similarity=0.202  Sum_probs=26.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|.+|..+++.|...|.. ..+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~   34 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGR   34 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCe-EEEEee
Confidence            46899999999999999999999977 444443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.34  E-value=0.22  Score=43.25  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r   38 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDI   38 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            45678999999 57899999999999997 4777765

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.34  E-value=1.2  Score=40.11  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=25.0

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      +|+|.|. |.+|..+++.|...|- .+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899995 7899999999999873 35777664

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=93.32  E-value=0.11  Score=48.53  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|.+++|+|||+|-+|..++++|...|+.+|+++...
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt  207 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ  207 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4788999999999999999999999999999998653

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.32  E-value=0.23  Score=45.97  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d   64 (288)
                      +|.|||+ |.+|+.+|-.|+..|+ .++.|+|-.
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            7999999 9999999999999997 579999974

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.31  E-value=0.41  Score=44.88  Aligned_cols=95  Identities=16%  Similarity=0.024  Sum_probs=59.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ...+|+|+|+|.+|.-.+..+.+.|...+.++|.+                      ..|.+.+++....    -.+...
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g~----~~~~~~  221 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGGA----DVVVNP  221 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCCC----eEeecC
Confidence            33489999999999999999999999999999862                      1233333321110    000000


Q ss_pred             ecC-CCCcchhhh--ccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036          110 KGD-LSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (288)
Q Consensus       110 ~~~-~~~~~~~~~--~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip  152 (288)
                      ..+ ......+.-  .++|+||.|+.+..+.....++++.  .+.-
T Consensus       222 ~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~--gG~v  265 (350)
T COG1063         222 SEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRP--GGTV  265 (350)
T ss_pred             ccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcC--CCEE
Confidence            000 000011122  3699999999988777777888877  5553

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.30  E-value=0.19  Score=46.54  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=29.3

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~   65 (288)
                      +|.|+|+ |.+|+.+|-.|+..|+ ..+.|+|-..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999999997 5799999743

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.29  E-value=0.27  Score=45.68  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      ++-.+|.|+|+ |.+|+.++-.|+..|.. .+.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            44569999998 99999999999977764 7999997

>PRK05866 short chain dehydrogenase; Provisional

Probab=93.29  E-value=0.31  Score=44.26  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            466789999995 7999999999999996 5777764

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.28  E-value=0.43  Score=38.80  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ++|+|.| .+|+|.++++.|+..|-..+.+++..               .     ...+.+.+.+.+.+.+  .++....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~~--~~~~~~~   58 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAPG--AKITFIE   58 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHTT--SEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----cccccccccccccccc--ccccccc
Confidence            3688898 67999999999999998888888763               1     2345666666777555  4555555


Q ss_pred             cCCC
Q 023036          111 GDLS  114 (288)
Q Consensus       111 ~~~~  114 (288)
                      .++.
T Consensus        59 ~D~~   62 (167)
T PF00106_consen   59 CDLS   62 (167)
T ss_dssp             SETT
T ss_pred             cccc
Confidence            4443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.26  E-value=0.47  Score=47.36  Aligned_cols=34  Identities=12%  Similarity=0.124  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+.+|+|||+|..|...|..|.+.|.. ++++|..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            567999999999999999999999985 9999964

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.23  E-value=0.37  Score=42.23  Aligned_cols=34  Identities=29%  Similarity=0.400  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999995 7999999999999997 4777654

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.22  E-value=0.26  Score=45.36  Aligned_cols=68  Identities=18%  Similarity=0.162  Sum_probs=47.2

Q ss_pred             EEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC----Cceeeeee
Q 023036           36 VCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MVRVSVEK  110 (288)
Q Consensus        36 IiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp----~v~v~~~~  110 (288)
                      |||+|.+|+.+|-.|+..|+ ++|.|+|-                      -+.|++..+.-|+...+    .+++.  .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~--~   56 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI----------------------NKDKAEGEAMDLQHAASFLPTPKKIR--S   56 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCChhhHHHHHHHHhhcccCCCeEEe--c
Confidence            68999999999999999998 46999985                      22234444555555432    23333  1


Q ss_pred             cCCCCcchhhhccCcEEEEecC
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                           .+.+.+++.|+||.+..
T Consensus        57 -----~~~~~~~daDivVitag   73 (299)
T TIGR01771        57 -----GDYSDCKDADLVVITAG   73 (299)
T ss_pred             -----CCHHHHCCCCEEEECCC
Confidence                 13567889999999864

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.21  E-value=0.44  Score=45.90  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|+|.|++|..+|+.|...|. ++++.|.
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~   36 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDG   36 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            457889999999999999999999996 4888885

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.20  E-value=1.1  Score=41.55  Aligned_cols=35  Identities=11%  Similarity=-0.025  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|+|.|+ |.+|+.+++.|+..|. +++++|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence            45789999995 7799999999999995 47777653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.18  E-value=0.34  Score=42.53  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r   41 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR   41 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            56789999996 68999999999999974 777654

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.18  E-value=0.48  Score=43.77  Aligned_cols=33  Identities=27%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++.++|.|+ ||+|.++|+.|+..|.. +.+++.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R   85 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVAR   85 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEEC
Confidence            4688999995 58999999999999974 888764

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=93.14  E-value=1.1  Score=34.52  Aligned_cols=31  Identities=6%  Similarity=0.139  Sum_probs=23.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhC--CCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~G--vg~i~lvD~   63 (288)
                      ||.|||+|..|...+..+...+  +.-..++|.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~   34 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP   34 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            7999999999999999999883  322335554

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.13  E-value=0.64  Score=45.89  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -++|.|||+|..|+.||.+|+.+|.. ++++|.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~   36 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDI   36 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeC
Confidence            35799999999999999999999965 889886

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05442 malate dehydrogenase; Provisional

Probab=93.13  E-value=0.23  Score=46.31  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gv-g-----~i~lvD~   63 (288)
                      .+|.|||+ |.+|+.+|-.|+..|+ +     +|.|+|-
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            48999998 9999999999999887 4     6999985

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.12  E-value=0.56  Score=42.76  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             cHHHHHHHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           22 GADAQRRLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        22 G~~~q~~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      +....+++.++.|+|-|++ |+|.++|+.|+..|.+-+.++ .                      -..|-+.+++.+++.
T Consensus         3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva-r----------------------~~rrl~~v~~~l~~~   59 (282)
T KOG1205|consen    3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA-R----------------------RARRLERVAEELRKL   59 (282)
T ss_pred             ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee-h----------------------hhhhHHHHHHHHHHh
Confidence            3456789999999999976 899999999999998844442 2                      112344555555555


Q ss_pred             CCCceeeeeecCCCCcc--h-------hhhccCcEEEEe
Q 023036          101 NPMVRVSVEKGDLSSLD--G-------EFYDKFDVVVVS  130 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~--~-------~~~~~~dvVi~~  130 (288)
                      -|.-++.+...++.+..  +       ..+.+.|+.|..
T Consensus        60 ~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN   98 (282)
T KOG1205|consen   60 GSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN   98 (282)
T ss_pred             CCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            44435666666655421  1       234566776653

>PRK06046 alanine dehydrogenase; Validated

Probab=93.12  E-value=0.49  Score=43.98  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...+|.|+|+|..|...+.+|. ..++..+.++|.                      ...+++.+++.+++..+ +.+..
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~  184 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTV  184 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence            3578999999999999999998 568889999886                      44566777777765433 33433


Q ss_pred             eecCCCCcchhhhccCcEEEEecCCh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ..     ..++.+. .|+|+.|+-+.
T Consensus       185 ~~-----~~~~~l~-aDiVv~aTps~  204 (326)
T PRK06046        185 AE-----DIEEACD-CDILVTTTPSR  204 (326)
T ss_pred             eC-----CHHHHhh-CCEEEEecCCC
Confidence            32     1234555 89999998653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.12  E-value=0.5  Score=46.42  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|+|.|+.|..+|+.|...|. +++..|.
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~   38 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADT   38 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcC
Confidence            457789999999999999999999997 5888886

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.08  E-value=0.55  Score=41.77  Aligned_cols=126  Identities=14%  Similarity=0.101  Sum_probs=82.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee-ee-
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV-EK-  110 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~-~~-  110 (288)
                      ++.+||+|-.|..++++|...|.. +..+|-+.-..+.+...           |-.-+..+.+.++++-+--.|-. .+ 
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~~-----------ga~~a~sl~el~~~L~~pr~vWlMvPa   69 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKDE-----------GATGAASLDELVAKLSAPRIVWLMVPA   69 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHhc-----------CCccccCHHHHHHhcCCCcEEEEEccC
Confidence            578999999999999999999965 77778655444444322           33334445666777765432222 11 


Q ss_pred             cCCCCc----chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc-----eEEEEEEcCCe
Q 023036          111 GDLSSL----DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS-----CGEIFVDLQNH  172 (288)
Q Consensus       111 ~~~~~~----~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~-----~G~v~~d~~~~  172 (288)
                      .++.+.    ...+++.=|+||+... +++...+-.+...+  +++-|+++++.|.     .||.+..-|+.
T Consensus        70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~lMiGG~~  139 (300)
T COG1023          70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCLMIGGDE  139 (300)
T ss_pred             CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceEEecCcH
Confidence            223221    2446778899999754 46665566666767  8999999999874     35666666643

>PLN02928 oxidoreductase family protein

Probab=93.00  E-value=0.1  Score=49.05  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+...-..|.+++|+|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus       149 w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        149 LGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             cccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            65322246899999999999999999999999997 5888876

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.96  E-value=0.19  Score=44.72  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.++.+++++|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r   41 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR   41 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            34678899999996 79999999999999965 788775

>PRK13243 glyoxylate reductase; Reviewed

Probab=92.87  E-value=0.14  Score=47.87  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|.++|+.|...|. ++..+|.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~  181 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR  181 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            36899999999999999999999999997 4778886

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.75  Score=44.39  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++|+|+|.|+.|..+|+.|...|. .+++.|.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~   36 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDA   36 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            457899999999999999999999996 4888885

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.83  E-value=0.63  Score=43.24  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=27.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|+|+|+-|+.+|+-|+..| ..++++..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r   32 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGR   32 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEec
Confidence            57999999999999999999999 66777644

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.76  E-value=0.69  Score=42.81  Aligned_cols=34  Identities=12%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|.|+|++|...+..+...|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            5789999999999999999888999988888775

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.76  E-value=0.17  Score=44.39  Aligned_cols=37  Identities=19%  Similarity=0.190  Sum_probs=34.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+.++|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~   56 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD   56 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            5788999999999999999999999999889999864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06436 glycerate dehydrogenase; Provisional

Probab=92.69  E-value=0.11  Score=47.82  Aligned_cols=43  Identities=9%  Similarity=0.094  Sum_probs=34.8

Q ss_pred             ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |.......|.+++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus       112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            54333457999999999999999999998877787 47888863

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.66  E-value=1.4  Score=41.27  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=52.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|+|+|+||+|.-.++....+| .+++.+|.                      +..|.+.+.    ++--+.-+....
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~----~lGAd~~i~~~~  219 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAK----KLGADHVINSSD  219 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHH----HhCCcEEEEcCC
Confidence            678999999999999999999999 77888875                      444544443    333232233221


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .+   .....-+.+|+||++.. ..+....-+.++.
T Consensus       220 ~~---~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~  251 (339)
T COG1064         220 SD---ALEAVKEIADAIIDTVG-PATLEPSLKALRR  251 (339)
T ss_pred             ch---hhHHhHhhCcEEEECCC-hhhHHHHHHHHhc
Confidence            11   11222223999999987 5544444455555

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.66  E-value=0.37  Score=42.27  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r   39 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL   39 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence            356788999996 78999999999999974 777765

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.61  E-value=0.35  Score=42.38  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r   39 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR   39 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            56789999995 6899999999999996 4777765

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=92.57  E-value=0.49  Score=45.66  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             cEEEEcCchHHH-HHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGs-eiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +|.|||+|+.-+ ++.+.|+.    .++++|+++|-|.  ++.+..               -...+.+.+.+.++.++++
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~---------------v~~~~~~~~~~~~~~~~v~   64 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI---------------VGALAKRMVKKAGLPIKVH   64 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH---------------HHHHHHHHHHhhCCCeEEE
Confidence            799999999766 67777776    4678999999753  222211               1234455566777777776


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ..+.     -.+.+++.|+||.+..  ..+.+..-.++..+  +++  +-..+.|.-|.++
T Consensus        65 ~t~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~--~Gi--~gqET~G~GG~~~  116 (419)
T cd05296          65 LTTD-----RREALEGADFVFTQIRVGGLEARALDERIPLK--HGV--IGQETTGAGGFAK  116 (419)
T ss_pred             EeCC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHH--cCC--ccccCCCcchHHH
Confidence            6542     3677889999999864  33444444445555  544  3456776666443

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=92.56  E-value=0.65  Score=42.80  Aligned_cols=35  Identities=11%  Similarity=0.161  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhC-CCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAG-VGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~G-vg~i~lvD~   63 (288)
                      +++++|+|.|+ |++|+.+++.|+..| ..+++++|.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r   38 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR   38 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            45678999995 789999999999987 457888774

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK06194 hypothetical protein; Provisional

Probab=92.56  E-value=0.46  Score=42.50  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|.| .|++|.++++.|+..|. +++++|.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5567899998 57899999999999997 4888775

>PLN02206 UDP-glucuronate decarboxylase

Probab=92.55  E-value=1.1  Score=43.56  Aligned_cols=105  Identities=10%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      -++.+|+|.|+ |-+|+.+++.|...|.. +..+|......          .+.+           ...+  .++  .++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~----------~~~~-----------~~~~--~~~--~~~  170 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGR----------KENV-----------MHHF--SNP--NFE  170 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccc----------hhhh-----------hhhc--cCC--ceE
Confidence            35688999995 77999999999999964 66666421110          0000           0011  122  233


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC---------Chh--------hHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC---------SVT--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~---------~~~--------~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      ....++.   +..+.++|+||-+..         ++.        ....+-+.|++  .+++||.+++...+|.
T Consensus       171 ~i~~D~~---~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~--~g~r~V~~SS~~VYg~  239 (442)
T PLN02206        171 LIRHDVV---EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGD  239 (442)
T ss_pred             EEECCcc---ChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECChHHhCC
Confidence            3333332   223456888877542         111        12345678888  7789999888776653

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.48  Score=41.17  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r   39 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG   39 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence            56789999995 79999999999999975 666653

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=92.52  E-value=1.3  Score=33.45  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+.+|+-+|||. |......+-+..-.+++-+|.                      ...-.+.+.+++.+....-+++.+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~----------------------s~~~~~~a~~~~~~~~~~~~i~~~   57 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDI----------------------SPEMLEIARERAAEEGLSDRITFV   57 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEES----------------------SHHHHHHHHHHHHHTTTTTTEEEE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCCeEEE
Confidence            367899999884 443333333334455888886                      222345566666555545567777


Q ss_pred             ecCCCCcchhhhccCcEEEEec
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      ..++ ....+...+||+|++..
T Consensus        58 ~~d~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   58 QGDA-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             ESCC-HGGTTTSSCEEEEEECS
T ss_pred             ECcc-ccCcccCCCCCEEEECC
Confidence            7776 34456667899999877

...

>PRK09186 flagellin modification protein A; Provisional

Probab=92.48  E-value=0.58  Score=40.93  Aligned_cols=34  Identities=26%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r   36 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADI   36 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEec
Confidence            45788999996 68999999999999964 666653

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.48  E-value=1.4  Score=40.87  Aligned_cols=35  Identities=11%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++.++|+|.|+ |=+|+.+++.|...|. +++.+|.
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~   47 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDN   47 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            456789999995 7799999999999985 5777875

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=92.47  E-value=0.5  Score=41.12  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=28.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r   35 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL   35 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            4678999999 46899999999999987 4777664

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=92.45  E-value=1.7  Score=40.13  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|.|+ |-+|+.+++.|...|=.+++.+|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            36999997 789999999999763235777764

>PRK00811 spermidine synthase; Provisional

Probab=92.45  E-value=0.25  Score=45.01  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036            7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus         7 ~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++.+.-.|.+.+.-...-...  ...+||++|+|+ |.-....|...++.+++.+|-
T Consensus        55 ~~~de~~Y~e~l~h~~~~~~~--~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEi  108 (283)
T PRK00811         55 TERDEFIYHEMMTHVPLFAHP--NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEI  108 (283)
T ss_pred             cCcchhhHHHHhhhHHHhhCC--CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeC
Confidence            333445666654433322211  357899999984 333333333468999999986

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=92.45  E-value=0.15  Score=46.06  Aligned_cols=102  Identities=10%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEE---EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLT---LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~---lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .||.|||||.+|..+++.|..-+...+.   +.|.+.-....+.             +..++-.-.+.+....|++-|++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------~~~~~~~~l~~ll~~~~DlVVE~   69 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------GRVALLDGLPGLLAWRPDLVVEA   69 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------ccCcccCCHHHHhhcCCCEEEEC
Confidence            5899999999999999998654433233   3343221111111             11111111334445567766664


Q ss_pred             eec-CCCCcchhhhc-cCcEEEEecC---ChhhHHHHHHHHHh
Q 023036          109 EKG-DLSSLDGEFYD-KFDVVVVSCC---SVTTKKLINEKCRK  146 (288)
Q Consensus       109 ~~~-~~~~~~~~~~~-~~dvVi~~~~---~~~~~~~i~~~~~~  146 (288)
                      -.. -+.+..+..++ +.|+|+.+..   +.....++.+.|++
T Consensus        70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            322 22334556666 8999998864   45567788889988

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.43  E-value=0.77  Score=34.68  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=50.2

Q ss_pred             cHHHHHHHHHhhhCCCceeeee--ecCCCCc---chhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036           88 TIAEVCCDSLKDFNPMVRVSVE--KGDLSSL---DGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus        88 ~Ka~~~~~~l~~lNp~v~v~~~--~~~~~~~---~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .+.....+.+.+.+  .+...+  .......   -+..+++.|+||+.++  +......+.+.|++  .++|++.+.+.|
T Consensus        10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk--~~ip~~~~~~~~   85 (97)
T PF10087_consen   10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK--YGIPIIYSRSRG   85 (97)
T ss_pred             ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH--cCCcEEEECCCC
Confidence            45566677777765  355555  2222222   3556788899999876  56778899999999  999999988777


Q ss_pred             ce
Q 023036          161 SC  162 (288)
Q Consensus       161 ~~  162 (288)
                      ..
T Consensus        86 ~~   87 (97)
T PF10087_consen   86 VS   87 (97)
T ss_pred             HH
Confidence            53

>PLN00016 RNA-binding protein; Provisional

Probab=92.40  E-value=0.46  Score=44.74  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             HHHHhcCcEEEE----cC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           26 QRRLSKSHILVC----GM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        26 q~~L~~~~VlIi----G~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      -....+.+|+|+    |+ |-+|+.+++.|...|. .+++++.+.-....+.             ..+     -..+.++
T Consensus        47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~-------------~~~-----~~~~~~l  107 (378)
T PLN00016         47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK-------------KEP-----FSRFSEL  107 (378)
T ss_pred             hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc-------------cCc-----hhhhhHh
Confidence            345566789999    75 6799999999999994 5888775432111000             000     0011111


Q ss_pred             CCCceeeeeecCCCCcchhhh--ccCcEEEEecC-ChhhHHHHHHHHHhcCCCc-eEEEEeeecceEE
Q 023036          101 NPMVRVSVEKGDLSSLDGEFY--DKFDVVVVSCC-SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCGE  164 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~~~~~--~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G~  164 (288)
                      .+. .++....++.+ ....+  .++|+||.+.. .......+-+.|++  .++ .||..++.|.+|.
T Consensus       108 ~~~-~v~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~--~gvkr~V~~SS~~vyg~  171 (378)
T PLN00016        108 SSA-GVKTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKS--PGLKQFLFCSSAGVYKK  171 (378)
T ss_pred             hhc-CceEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEEccHhhcCC
Confidence            110 13333333322 11222  46899998753 34445567778887  666 6888888877653

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.39  E-value=0.24  Score=45.28  Aligned_cols=116  Identities=15%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|.+||+|..|..+|+||..+|. .++++|.+.-.....-...          |-.-+...++...+.  ++-+.....
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~----------Ga~~a~s~~eaa~~a--DvVitmv~~   67 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAA----------GATVAASPAEAAAEA--DVVITMLPD   67 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHc----------CCcccCCHHHHHHhC--CEEEEecCC
Confidence            479999999999999999999994 4888886433211111110          211111111222211  233333322


Q ss_pred             CC--CC--c-chhh---hccCcEEEEe-cCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036          112 DL--SS--L-DGEF---YDKFDVVVVS-CCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (288)
Q Consensus       112 ~~--~~--~-~~~~---~~~~dvVi~~-~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~  162 (288)
                      ..  .+  . ....   .+.=.++|++ +.++...+++.+...+  .+..|+++-..|..
T Consensus        68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~  125 (286)
T COG2084          68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGV  125 (286)
T ss_pred             HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCc
Confidence            11  00  0 0112   2334566665 4578888899999988  99999999988854

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.34  E-value=0.48  Score=41.60  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r   42 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR   42 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence            367889999995 7899999999999997 4777765

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.32  E-value=0.5  Score=41.55  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            46789999999 57899999999999997 5777765

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.30  E-value=0.41  Score=41.45  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=27.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEE-cC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM-DD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lv-D~   63 (288)
                      |++++++|.|+ |++|.++++.|+..|.. +.++ +.
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r   38 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI   38 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            66789999995 79999999999999976 4554 53

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.29  E-value=0.53  Score=45.68  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      +.+.+|+|+|+|..|..+++.|...| ..+++.|.....
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            34899999999999999999999999 559999975544

>PRK06181 short chain dehydrogenase; Provisional

Probab=92.29  E-value=0.59  Score=41.17  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            57899996 7899999999999996 6887765

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=92.28  E-value=0.76  Score=43.93  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=36.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~v   66 (288)
                      ++|+..+|++.|+|+-|..+++.|..+|+.  +|.++|..-+
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~  236 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL  236 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence            478999999999999999999999999998  9999998544

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.24  E-value=0.4  Score=41.58  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++.+++|.| .|++|..+++.|+..|. ++.+++.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r   39 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR   39 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            45678899998 55899999999999997 6888875

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.21  E-value=0.52  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r   36 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL   36 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            4678999999 57999999999999996 4777654

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.15  E-value=0.66  Score=45.29  Aligned_cols=35  Identities=9%  Similarity=-0.091  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|+|+|+|-.|..+++.|...|.. +++.|.+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCC
Confidence            4678999999999999999999999977 7888863

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=92.14  E-value=0.26  Score=46.69  Aligned_cols=44  Identities=9%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCccccccc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSAN   74 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~   74 (288)
                      ...|+|||+|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~   74 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN   74 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence            45699999999999999999995 877899999877654443333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.05  E-value=0.48  Score=44.04  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467889999997 69999999999999975 777764

>PRK06199 ornithine cyclodeaminase; Validated

Probab=92.04  E-value=1  Score=42.88  Aligned_cols=76  Identities=12%  Similarity=0.126  Sum_probs=58.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVS  107 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~  107 (288)
                      .+++.|+|+|..+-.-++.+...  ++.++.++|.                      ...|++..++++++..+.+ ++.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~  212 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE  212 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence            57899999999999999988763  5889999875                      5568888899988876544 355


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      +..     ...+.+.+.|+|+.|+.+
T Consensus       213 ~~~-----s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        213 VVD-----SIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             EeC-----CHHHHHcCCCEEEEccCC
Confidence            432     246778899999988754

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.03  E-value=0.96  Score=43.69  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...|+|+|.|+.|..+|+.|...|. +++..|.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~   37 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS   37 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence            5679999999999999999999997 4888885

>PRK08339 short chain dehydrogenase; Provisional

Probab=92.02  E-value=0.82  Score=40.62  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.++.++|.|+ +|+|.++++.|+..|. ++.++|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r   40 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR   40 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999996 5899999999999997 4888775

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.00  E-value=0.65  Score=42.86  Aligned_cols=32  Identities=9%  Similarity=0.088  Sum_probs=29.0

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      .+|.|+|+ |.+|..++..|+..|+. +++++|.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEEC
Confidence            37999998 99999999999999974 7999997

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.98  E-value=0.8  Score=45.10  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHH--hCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVL--AGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l--~Gvg~i~lvD~d~   65 (288)
                      ...+|+|||+|.-|.+.|..|+.  .|. +++|+|...
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence            46789999999999999999997  564 599999765

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.97  E-value=0.6  Score=41.11  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~   47 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH   47 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999995 58999999999999975 666654

>PLN03075 nicotianamine synthase; Provisional

Probab=91.92  E-value=2.9  Score=38.41  Aligned_cols=113  Identities=11%  Similarity=0.078  Sum_probs=61.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHh---hhCCCce
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK---DFNPMVR  105 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~---~lNp~v~  105 (288)
                      ..++|+-||+|..|...+--++...- ++++=+|.+.              +        ..+.+++.+.   .+.+.  
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--------------~--------ai~~Ar~~~~~~~gL~~r--  178 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--------------S--------ANDVARRLVSSDPDLSKR--  178 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--------------H--------HHHHHHHHhhhccCccCC--
Confidence            88999999999776554444443333 3566666421              1        1222233332   22233  


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC----ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC----SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~----~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      ++....+..+. .....+||+|++...    ...-...+..+.+.+..+-.++.....|..+..|-
T Consensus       179 V~F~~~Da~~~-~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp  243 (296)
T PLN03075        179 MFFHTADVMDV-TESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYP  243 (296)
T ss_pred             cEEEECchhhc-ccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCC
Confidence            44444444332 123568999998841    23334455555555444545665556888886653

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=91.90  E-value=0.86  Score=42.37  Aligned_cols=75  Identities=12%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...++.|||+|..|...++.|.. ..+.++.++|.                      ...|++..++++++..+  ++..
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~g~--~v~~  182 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDYEV--PVRA  182 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhhCC--cEEE
Confidence            35789999999999987777654 34567777764                      55577788888776532  3333


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..     ...+.+++.|+|+.|+.+
T Consensus       183 ~~-----~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       183 AT-----DPREAVEGCDILVTTTPS  202 (325)
T ss_pred             eC-----CHHHHhccCCEEEEecCC
Confidence            21     245677899999998855

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.87  E-value=0.53  Score=41.01  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG   56 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg   56 (288)
                      |.+.+++|.|+ |++|.++++.|+..|..
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~   30 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYD   30 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            45678999985 68999999999999965

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=91.86  E-value=1.8  Score=40.19  Aligned_cols=32  Identities=13%  Similarity=-0.007  Sum_probs=25.9

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+|+|.| +|.+|+.+++.|+..|.. +.+++.
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r   42 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR   42 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56899999 578999999999999964 555544

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.86  E-value=0.94  Score=39.87  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r   39 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR   39 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            56789999997 6899999999999998 6888875

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=91.83  E-value=0.54  Score=43.74  Aligned_cols=50  Identities=18%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             Hhhhhhhhh--ccHHH------HHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           12 ALYDRQIRV--WGADA------QRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        12 ~rYdRqirl--~G~~~------q~~L~~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      ..++|++|-  |...+      ...++.+++.|+|.|.+|..+|+.+.  |+| ++...|.
T Consensus       119 ~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~  177 (324)
T COG1052         119 HEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDR  177 (324)
T ss_pred             HHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECC
Confidence            345566665  44432      23688999999999999999999999  554 3555565

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.83  E-value=0.74  Score=48.95  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=54.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..++|+|||+|..|...|..|++.|.. +||+|..    +.++...-+.--+. ...+.-.+.-.+.++++.  +++...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~GG~l~yGIP~~-rlp~~vi~~~i~~l~~~G--v~f~~n  376 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDLGGVLRYGIPEF-RLPNQLIDDVVEKIKLLG--GRFVKN  376 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCCCceEEccCCCC-cChHHHHHHHHHHHHhhc--CeEEEe
Confidence            479999999999999999999999975 9999863    23333322211111 002222233334455543  333321


Q ss_pred             ecCCCCcc-hhhhc-cCcEEEEecCC
Q 023036          110 KGDLSSLD-GEFYD-KFDVVVVSCCS  133 (288)
Q Consensus       110 ~~~~~~~~-~~~~~-~~dvVi~~~~~  133 (288)
                      ..--.+.. ++..+ +||.||+++..
T Consensus       377 ~~vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        377 FVVGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             EEeccEEeHHHhccccCCEEEEeCCC
Confidence            11001112 33444 69999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.80  E-value=1.3  Score=46.98  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      -..++|+|||+|..|-+.|..|++.|.. +|++|...++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~  418 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT  418 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence            3678999999999999999999999966 9999986554

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=91.79  E-value=0.7  Score=45.66  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|..|+.||.+|+.+|.. ++++|.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDAR   39 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence            5799999999999999999999976 8898863

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=91.77  E-value=0.23  Score=42.04  Aligned_cols=32  Identities=22%  Similarity=0.187  Sum_probs=26.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +|.|+|+|.+|.-+|-.++++|.. ++++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence            689999999999999999999966 99999743

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.64  E-value=0.53  Score=43.17  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=27.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            3567899998 47899999999999994 5777764

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=91.64  E-value=2  Score=39.38  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.| .|.+|..+++.|+..|.. ++++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~   32 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHD-VVILDN   32 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCe-EEEEec
Confidence            699999 589999999999999964 776653

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.64  E-value=1.4  Score=40.29  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=29.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +..+|+|+|+|++|...+..+...|...+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            5668999999999999998888889988877764

>PRK12746 short chain dehydrogenase; Provisional

Probab=91.60  E-value=0.42  Score=41.80  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM   61 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lv   61 (288)
                      ++|++++|+|.| .|++|+++++.|+..|.. +.+.
T Consensus         2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~   36 (254)
T PRK12746          2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIH   36 (254)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            356788999999 568999999999999864 5443

>PRK07035 short chain dehydrogenase; Provisional

Probab=91.56  E-value=0.76  Score=40.16  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r   40 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR   40 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36788999999 56899999999999997 6888875

>PRK08589 short chain dehydrogenase; Validated

Probab=91.56  E-value=0.47  Score=42.33  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r   38 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDI   38 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999996 68999999999999964 777664

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=91.55  E-value=0.65  Score=45.04  Aligned_cols=105  Identities=15%  Similarity=0.101  Sum_probs=68.5

Q ss_pred             cEEEEcCchHHH-HHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH-HHHHHHhhhCCCcee
Q 023036           33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE-VCCDSLKDFNPMVRV  106 (288)
Q Consensus        33 ~VlIiG~gglGs-eiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~-~~~~~l~~lNp~v~v  106 (288)
                      +|.|||+|+.=+ ++++.|+.    .++++|+|+|-|.   +-+                ..+. .+.+...+.++.++|
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl----------------~~v~~l~~~~~~~~g~~~~v   62 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQ----------------EKVAEAVKILFKENYPEIKF   62 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHH----------------HHHHHHHHHHHHhhCCCeEE
Confidence            799999998633 66777764    3568999998532   111                1122 333444556666677


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v  165 (288)
                      +..+.     -.+.+++.|.||.+..  ..+.+..=.++..+  +++  +-..+.|.-|.+
T Consensus        63 ~~Ttd-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip~k--yGi--~gqET~G~GG~~  114 (437)
T cd05298          63 VYTTD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIPLK--HGV--VGQETCGPGGFA  114 (437)
T ss_pred             EEECC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHH--cCc--ceecCccHHHHH
Confidence            66542     3678899999999863  45666666678888  875  555777777643

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.50  E-value=1.2  Score=43.35  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCchHHHH-HHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGse-iaknL~l~Gvg~i~lvD~   63 (288)
                      +.++|+|+|+|+.|.. +|+.|...|.. +++.|.
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~   39 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL   39 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence            4578999999999999 79999999976 888886

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.44  E-value=0.91  Score=44.06  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=50.1

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHh-------CCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLA-------GVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-  101 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~-------Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-  101 (288)
                      .+|.|||+ |.+|+.+|-.|+..       |+- +|.++|.                      .+.|++..+-.|+..- 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~----------------------~~~~a~G~amDL~daa~  158 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER----------------------SKQALEGVAMELEDSLY  158 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC----------------------CcchhHHHHHHHHHhhh
Confidence            58999999 99999999999988       542 4666653                      3345555555555544 


Q ss_pred             CCc-eeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          102 PMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       102 p~v-~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      |.. ++....     .+.+.+++.|+||++...
T Consensus       159 ~~~~~v~i~~-----~~ye~~kdaDiVVitAG~  186 (444)
T PLN00112        159 PLLREVSIGI-----DPYEVFQDAEWALLIGAK  186 (444)
T ss_pred             hhcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence            332 222222     235678999999998653

>PRK07814 short chain dehydrogenase; Provisional

Probab=91.44  E-value=0.77  Score=40.63  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++++|.|.+ ++|.++++.|+..|. ++.++|.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r   42 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAAR   42 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            667899999955 799999999999998 6888775

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.42  E-value=1.4  Score=40.92  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|+|+|++|..++..+-..|. +++++|.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            57899999999999999999999998 5777775

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.39  E-value=1.4  Score=41.74  Aligned_cols=35  Identities=6%  Similarity=-0.079  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+.+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            35678999999 999999999998653345777886

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.37  E-value=0.76  Score=40.90  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r   42 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR   42 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            367788999995 7999999999999998 4888775

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.35  E-value=1.1  Score=45.69  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            578999999999999999999999976 9999864

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=91.31  E-value=0.81  Score=40.36  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..|+..+|+|.|.|.+|..+++.|...|..-+.+.|..
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            45789999999999999999999999998766688863

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.27  E-value=0.78  Score=41.09  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++.++|.|+||+|.++++.|. .|. ++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence            467889999999999999996 784 5877775

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=91.26  E-value=5.3  Score=30.41  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+-+|+|. |.-....+...+-++++-+|.                      .....+.+.+.+++..- -+++...
T Consensus        20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~~~~~~   75 (124)
T TIGR02469        20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIER----------------------NPEALRLIERNARRFGV-SNIVIVE   75 (124)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcC----------------------CHHHHHHHHHHHHHhCC-CceEEEe
Confidence            56899999975 555444444434467888885                      22344445555554421 1344443


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .+...........||+|+...........+.+..+.
T Consensus        76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  111 (124)
T TIGR02469        76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR  111 (124)
T ss_pred             ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence            333221122335899999865332323334434333

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK12937 short chain dehydrogenase; Provisional

Probab=91.22  E-value=0.69  Score=40.06  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +.+++|+|.|+ |++|..+++.|+..|.. +.++.
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~   36 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNY   36 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEec
Confidence            45788999995 79999999999999975 44443

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.18  E-value=0.4  Score=44.27  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -.+|.|||+|-.|+-||..++.+|+. +++.|..
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS   35 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence            36899999999999999999997766 9999975

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=91.09  E-value=1.3  Score=45.39  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            45678999985 6899999999999997 5888774

>TIGR00065 ftsZ cell division protein FtsZ

Probab=91.02  E-value=1.2  Score=41.90  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeE--EEEcCCc
Q 023036           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRV   65 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i--~lvD~d~   65 (288)
                      +.++--.+.+|.|||+||-|+-++.+|...|+..+  ..+|.|.
T Consensus        10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~   53 (349)
T TIGR00065        10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA   53 (349)
T ss_pred             hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence            34444456789999999999999999999998644  4467654

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.99  E-value=1.4  Score=43.23  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|+|+|..|..+++.|...|. ++++.|.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~   43 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD   43 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            57899999999999999999999995 5888885

>PRK05876 short chain dehydrogenase; Provisional

Probab=90.99  E-value=0.43  Score=42.85  Aligned_cols=34  Identities=15%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++++|.| .|++|.++++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r   38 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV   38 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            6678899998 668999999999999975 777764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=90.99  E-value=0.37  Score=45.03  Aligned_cols=41  Identities=12%  Similarity=0.059  Sum_probs=35.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW   71 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl   71 (288)
                      .+.+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s   43 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA   43 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence            46789999999999999999999999 899999888755443

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.97  E-value=0.43  Score=42.31  Aligned_cols=39  Identities=15%  Similarity=0.128  Sum_probs=33.6

Q ss_pred             HHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        25 ~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|.+|++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            688999999999996 6899999999999997 47777654

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.95  E-value=1.4  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence            56789999995 6899999999999995 4777764

>PRK12829 short chain dehydrogenase; Provisional

Probab=90.94  E-value=1.2  Score=39.03  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r   43 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV   43 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            44578899999995 68999999999999975 888774

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.91  E-value=1.6  Score=45.11  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|..|+.||-.++.+|.. ++++|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~  345 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDIN  345 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCC
Confidence            5799999999999999999999975 9999964

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.89  E-value=1.3  Score=45.09  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~  225 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN  225 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            457999999999999999999999975 9999864

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.88  E-value=0.66  Score=39.97  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTL   60 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~l   60 (288)
                      +..++|+|.| .|++|.++++.|...|.. +++
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~   35 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV   35 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence            4567899998 578999999999999985 444

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=90.86  E-value=0.23  Score=45.90  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=31.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||.|.+|.++|+-+.-.|.. +..+|+
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~  176 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST  176 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence            479999999999999999999999877764 777776

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=90.82  E-value=0.67  Score=39.92  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |.+++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678999995 78999999999999986 7777754

>CHL00194 ycf39 Ycf39; Provisional

Probab=90.80  E-value=3  Score=38.10  Aligned_cols=30  Identities=13%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.|+ |-+|+.+++.|...|. +++.++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R   32 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR   32 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence            6999995 7799999999999995 4666653

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=90.78  E-value=1.1  Score=42.12  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=52.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEE-EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~-lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +|.|+|+ |.+|.++++.|...-.-++. +++.+.               ..   |+.-        .+..|.+.... .
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~~--------~~~~~~l~~~~-~   54 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKPV--------SEVHPHLRGLV-D   54 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCCh--------HHhCccccccC-C
Confidence            7999998 88999999999966333444 556421               11   3321        11122211100 0


Q ss_pred             cCCCCcc-hhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          111 GDLSSLD-GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       111 ~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      ..+.+.+ .++.+++|+|+.|..+......+. .+.+  .++.+|+.++
T Consensus        55 ~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~-~~~~--~G~~VIDlS~  100 (346)
T TIGR01850        55 LNLEPIDEEEIAEDADVVFLALPHGVSAELAP-ELLA--AGVKVIDLSA  100 (346)
T ss_pred             ceeecCCHHHhhcCCCEEEECCCchHHHHHHH-HHHh--CCCEEEeCCh
Confidence            0111111 334458999999987665544444 4445  6677776443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.76  E-value=1  Score=39.13  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r   38 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI   38 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999996 8999999999999995 4777765

>PRK09330 cell division protein FtsZ; Validated

Probab=90.75  E-value=1  Score=42.95  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~   65 (288)
                      ....+|-|||+||-|+.++.+|...|+..  +..++.|.
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~   49 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA   49 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence            34678999999999999999999999763  44455544

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.75  E-value=1.8  Score=37.97  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r   34 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADI   34 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467999985 5899999999999996 5888875

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=90.73  E-value=0.41  Score=43.48  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             EEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCC--
Q 023036           36 VCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL--  113 (288)
Q Consensus        36 IiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~--  113 (288)
                      |||+|.+|..++++|...|. +++++|.+.-....+..        .   |...+....+.+++  .++-+...+...  
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---g~~~~~s~~~~~~~--advVil~vp~~~~~   66 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------A---GAQAAASPAEAAEG--ADRVITMLPAGQHV   66 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEeCCChHHH
Confidence            58999999999999999996 58999865322222211        1   22112122222221  233333333211  


Q ss_pred             CCc------chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          114 SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       114 ~~~------~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ...      ....+..-.+||+++ .++...+.+.+.+.+  +++.|+++-..|.
T Consensus        67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg  119 (288)
T TIGR01692        67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGG  119 (288)
T ss_pred             HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCC
Confidence            100      011223334666655 456677788999988  8899998766653

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=90.73  E-value=0.86  Score=39.93  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r   41 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI   41 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence            56788999984 6899999999999996 5777664

>PRK05855 short chain dehydrogenase; Validated

Probab=90.72  E-value=0.68  Score=45.55  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             cHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           22 GADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        22 G~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +...+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus       306 ~~~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r  347 (582)
T PRK05855        306 VGRPRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI  347 (582)
T ss_pred             hccccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            344456788899999995 79999999999999986 777764

>PLN02214 cinnamoyl-CoA reductase

Probab=90.69  E-value=3.7  Score=38.08  Aligned_cols=33  Identities=12%  Similarity=0.004  Sum_probs=27.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      ++.++|+|.|+ |.+|+.+++.|...|.. ++.++
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~   41 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTV   41 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence            45678999997 78999999999999964 65554

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.64  E-value=2  Score=41.63  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ....+|+|||.|..|.+.|..|.+.|.. ++|+|..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            3567899999999999999999999974 9999974

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=90.63  E-value=0.87  Score=41.77  Aligned_cols=141  Identities=17%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             CCHHHHHhhhhhhhhc-cHHHHHHH--hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            6 LTEQETALYDRQIRVW-GADAQRRL--SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         6 l~~~e~~rYdRqirl~-G~~~q~~L--~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +++...+.++|-++-- +...-.+.  ...+|-.||+|-.|+.+++||+.+|.. +|++|-+.-....+...    ...+
T Consensus         7 ~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~~----Ga~v   81 (327)
T KOG0409|consen    7 LAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQEA----GARV   81 (327)
T ss_pred             cccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHHh----chhh
Confidence            4455556666654431 11111222  378999999999999999999999965 99999533222211100    1111


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-----chhhhc-----cCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-----DGEFYD-----KFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-----~~~~~~-----~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip  152 (288)
                         ..+=+|++..      .++-+.....+..-.     ....++     +...|-.++-++...+.|.+..+.  .+.-
T Consensus        82 ---~~sPaeVae~------sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~  150 (327)
T KOG0409|consen   82 ---ANSPAEVAED------SDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGR  150 (327)
T ss_pred             ---hCCHHHHHhh------cCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCe
Confidence               2222333321      133344333321100     011112     122244455678888899999988  8889


Q ss_pred             EEEEeeecce
Q 023036          153 FYTVDCRDSC  162 (288)
Q Consensus       153 ~i~~~~~G~~  162 (288)
                      |+++-..|..
T Consensus       151 ~vDAPVSGg~  160 (327)
T KOG0409|consen  151 FVDAPVSGGV  160 (327)
T ss_pred             EEeccccCCc
Confidence            9999888754

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=90.61  E-value=0.32  Score=46.23  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58999999999999999999999999986 777886

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.57  E-value=0.38  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r  183 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGAR  183 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            568999999999999999999999997 7999886

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=90.54  E-value=5  Score=36.56  Aligned_cols=31  Identities=13%  Similarity=0.097  Sum_probs=25.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +++|+|.|+ |.+|+.+++.|+..|.. +.+++
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence            468999994 78999999999999964 55543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=90.48  E-value=0.72  Score=40.64  Aligned_cols=118  Identities=12%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +|.|||||++|..+++-+-.-  ++.-+.+.|.+.-...++.+.       +   +....    ..|-++-+.+++-+..
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~-------~---~~~~~----s~ide~~~~~DlvVEa   67 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS-------V---GRRCV----SDIDELIAEVDLVVEA   67 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh-------c---CCCcc----ccHHHHhhccceeeee
Confidence            689999999999998865432  255555566533322222211       1   11111    1122222333333332


Q ss_pred             cCC---CCcchhhh-ccCcEEEEecC---ChhhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          111 GDL---SSLDGEFY-DKFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       111 ~~~---~~~~~~~~-~~~dvVi~~~~---~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      ...   .++....+ .++|++|.+..   +...+.++-+.++..+..+-+......|+.+.
T Consensus        68 AS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l  128 (255)
T COG1712          68 ASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDAL  128 (255)
T ss_pred             CCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHH
Confidence            221   22333334 45999998875   34456667777776334444445555555443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.47  E-value=2.1  Score=43.52  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||.|..|...|..|.+.|.. ++|+|..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCC
Confidence            479999999999999999999999984 9999864

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=90.47  E-value=0.46  Score=45.06  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=30.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ++|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999996 699999875

>PRK15076 alpha-galactosidase; Provisional

Probab=90.46  E-value=1.6  Score=42.18  Aligned_cols=108  Identities=15%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             CcEEEEcCchHHHHHHH--HHH-HhCC--CeEEEEcCCcCCcccccccccCCCCccccCCCcH-HHH-HHHHHhhhCCCc
Q 023036           32 SHILVCGMKGTVAEFCK--NIV-LAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI-AEV-CCDSLKDFNPMV  104 (288)
Q Consensus        32 ~~VlIiG~gglGseiak--nL~-l~Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K-a~~-~~~~l~~lNp~v  104 (288)
                      .+|.|||+|++|...+-  .++ ..+.  ..++|+|-+.                    .+.+ +.+ +.+.+..+.+.+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~   61 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA   61 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence            47999999998865544  554 2333  3799999521                    1111 222 333344455555


Q ss_pred             eeeeeecCCCCcchhhhccCcEEEEecCCh--hhHHHHH-HHHHhcCCCceEEEEeeecceEEEE
Q 023036          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV--TTKKLIN-EKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~--~~~~~i~-~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ++...+.     ..+.+++.|+||.+....  +.....+ ++..+  +++--=...+.|.-|.++
T Consensus        62 ~i~~ttD-----~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~  119 (431)
T PRK15076         62 KITATTD-----RREALQGADYVINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMR  119 (431)
T ss_pred             EEEEECC-----HHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhh
Confidence            6654321     146678999999987542  3332233 45555  555311225666666544

>PLN02253 xanthoxin dehydrogenase

Probab=90.46  E-value=1.2  Score=39.73  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            46788899998 56899999999999996 4777764

>PRK06198 short chain dehydrogenase; Provisional

Probab=90.46  E-value=1  Score=39.47  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.|+ |++|..+++.|+..|..++.++|.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r   39 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR   39 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence            467889999995 689999999999999877888876

>PRK07109 short chain dehydrogenase; Provisional

Probab=90.42  E-value=1  Score=41.81  Aligned_cols=35  Identities=11%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R   40 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR   40 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            466788999995 7899999999999996 4777764

>PRK06487 glycerate dehydrogenase; Provisional

Probab=90.41  E-value=0.33  Score=44.94  Aligned_cols=36  Identities=8%  Similarity=-0.022  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|+|+|.+|.++|+-|.-.|+. +..+|.
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~  179 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQL  179 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECC
Confidence            369999999999999999999999888874 666664

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=90.41  E-value=0.36  Score=45.05  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~  177 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA  177 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            46899999999999999999999999986 4888885

>PTZ00188 adrenodoxin reductase; Provisional

Probab=90.38  E-value=1.9  Score=42.41  Aligned_cols=95  Identities=13%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh--hCCCcee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNPMVRV  106 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~--lNp~v~v  106 (288)
                      ...+|+|||+|..|.++|..|. ..|+. ++|+|....--.- -|. -+.++.      .+.+.+.+.+.+  .++.+++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGL-vR~-GVaPdh------~~~k~v~~~f~~~~~~~~v~f  108 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGL-IRY-GVAPDH------IHVKNTYKTFDPVFLSPNYRF  108 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccE-EEE-eCCCCC------ccHHHHHHHHHHHHhhCCeEE
Confidence            4678999999999999999775 56754 9999975554322 221 122221      233344444433  2344443


Q ss_pred             eeeecCC-CCc-chhhhccCcEEEEecCCh
Q 023036          107 SVEKGDL-SSL-DGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       107 ~~~~~~~-~~~-~~~~~~~~dvVi~~~~~~  134 (288)
                      .. ...+ .+. .+++...||.||.++...
T Consensus       109 ~g-nv~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        109 FG-NVHVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             Ee-eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence            31 1111 122 355567899999988653

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=90.38  E-value=2  Score=41.53  Aligned_cols=107  Identities=12%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             cEEEEcCchH-HHHHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           33 HILVCGMKGT-VAEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~ggl-GseiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +|.|||+|+. +-++++.|+.    ..+++|.++|-|.-   -+.              . -...+.+.+.+.++.++++
T Consensus         2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl~--------------~-v~~l~~~~~~~~g~~~~v~   63 (425)
T cd05197           2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RLD--------------I-ILTIAKRYVEEVGADIKFE   63 (425)
T ss_pred             EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HHH--------------H-HHHHHHHHHHhhCCCeEEE
Confidence            7999999985 3367777773    34689999995321   110              0 1223444556677777777


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC--ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ..+.     -.+.++++|+||.+..  ..+.+..=.++..+  +++  +-..+.|..|.++
T Consensus        64 ~ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk--~G~--~gqeT~G~GG~~~  115 (425)
T cd05197          64 KTMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLK--YGV--IGQETVGPGGTFS  115 (425)
T ss_pred             EeCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHH--cCc--ccccccCcchhhh
Confidence            6643     3678899999999863  45666655567777  655  3367888777554

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK07326 short chain dehydrogenase; Provisional

Probab=90.31  E-value=1.4  Score=38.02  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+.+|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r   38 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR   38 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence            44678999985 78999999999999875 777664

>PLN02572 UDP-sulfoquinovose synthase

Probab=90.29  E-value=0.89  Score=44.05  Aligned_cols=36  Identities=14%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++++.+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            356778899999 57899999999999996 5888885

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=90.28  E-value=0.38  Score=44.82  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 6999997654

>PRK06914 short chain dehydrogenase; Provisional

Probab=90.27  E-value=1.5  Score=39.06  Aligned_cols=33  Identities=15%  Similarity=0.033  Sum_probs=26.8

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++++|.| .|++|..+++.|+..|.. +.+++.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r   35 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMR   35 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeC
Confidence            456789998 578999999999999965 666664

>PRK08374 homoserine dehydrogenase; Provisional

Probab=90.27  E-value=2.7  Score=39.25  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=19.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHH
Q 023036           32 SHILVCGMKGTVAEFCKNIVL   52 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l   52 (288)
                      -+|.|+|+|.+|+.+++.|..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            589999999999999999876

>PRK07102 short chain dehydrogenase; Provisional

Probab=90.19  E-value=1.9  Score=37.46  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.3

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|.| .|++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r   33 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAAR   33 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeC
Confidence            4789998 57999999999999996 4777775

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=90.18  E-value=2.5  Score=36.19  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=21.4

Q ss_pred             EEEEc-CchHHHHHHHHHHHhCCCeE
Q 023036           34 ILVCG-MKGTVAEFCKNIVLAGVGSL   58 (288)
Q Consensus        34 VlIiG-~gglGseiaknL~l~Gvg~i   58 (288)
                      |+|+| .|-+|+++++.|...|..-+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~   26 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVI   26 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccc
Confidence            78998 56699999999999997744

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=90.18  E-value=2.2  Score=40.56  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=26.7

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|.|. |.+|..+++.|...|.. +++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence            4568999995 78999999999999964 666654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=90.18  E-value=0.37  Score=45.90  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            368899999999999999999999999986 777886

>PRK08862 short chain dehydrogenase; Provisional

Probab=90.18  E-value=1.1  Score=39.10  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++++|.|++ |+|.++++.|+..|.. +.+++.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r   37 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ   37 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence            567899999965 7999999999999975 777654

>PRK12827 short chain dehydrogenase; Provisional

Probab=90.17  E-value=1.4  Score=38.04  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=28.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++++|.| .|++|.++++.|+..|.. +++++.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~   38 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI   38 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence            5678899999 578999999999999975 777763

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=90.17  E-value=3.8  Score=35.49  Aligned_cols=96  Identities=14%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             EEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        34 VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      |+|+|+ |.+|..+++.|...|.. ++++=.               .      .   .....+.++..  .+.+  ...+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R---------------~------~---~~~~~~~l~~~--g~~v--v~~d   51 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRALVR---------------D------P---SSDRAQQLQAL--GAEV--VEAD   51 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEEES---------------S------S---HHHHHHHHHHT--TTEE--EES-
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEEEe---------------c------c---chhhhhhhhcc--cceE--eecc
Confidence            789996 88999999999997755 444211               1      1   11223444443  2333  3444


Q ss_pred             CCCc--chhhhccCcEEEEecCC-----hhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          113 LSSL--DGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       113 ~~~~--~~~~~~~~dvVi~~~~~-----~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +.+.  ....++++|.|+++...     .+....+-+.|.+  .+++.+.-..+|
T Consensus        52 ~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~--agVk~~v~ss~~  104 (233)
T PF05368_consen   52 YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA--AGVKHFVPSSFG  104 (233)
T ss_dssp             TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH--HT-SEEEESEES
T ss_pred             cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc--cccceEEEEEec
Confidence            4432  35678999999998762     3345567788888  677766544433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=90.13  E-value=1.4  Score=40.72  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..++.|+|+|..+-.-++.+.. -++.++.++|.                      ...+++.+++++++ . .+.+...
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~  183 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV  183 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence            4689999999999988887754 56899999875                      45588999999999 3 5666655


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChh
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      .     ..++.+++.|+|+.|+.+..
T Consensus       184 ~-----~~~~av~~aDii~taT~s~~  204 (313)
T PF02423_consen  184 D-----SAEEAVRGADIIVTATPSTT  204 (313)
T ss_dssp             S-----SHHHHHTTSSEEEE----SS
T ss_pred             c-----chhhhcccCCEEEEccCCCC
Confidence            3     24677899999999886543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.12  E-value=1.8  Score=37.28  Aligned_cols=34  Identities=12%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r   37 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR   37 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999996 5799999999999997 4777664

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=90.10  E-value=1.4  Score=38.30  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            467889999998 56799999999999997 67787763

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=90.07  E-value=2  Score=44.36  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      .+|.|||+|.+|..+++.|...|. ..++++|.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~   36 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR   36 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            579999999999999999999995 46888886

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=90.07  E-value=0.49  Score=43.08  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE   68 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~   68 (288)
                      .|+|||+|-+|+.+|..|++.|. +++|+|...+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999998 799999985543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=90.03  E-value=0.44  Score=46.06  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|||.|-+|++.|-.|++.|+. ++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            35899999999999999999999976 899984

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.01  E-value=1.7  Score=41.98  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=30.1

Q ss_pred             HHhc-CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           28 RLSK-SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        28 ~L~~-~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      |+.+ ++|+|+|.|+.|...++.|...|- -.+++.|.
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~   40 (438)
T PRK04663          3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDT   40 (438)
T ss_pred             cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            4455 789999999999999999999964 46888885

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.99  E-value=1.9  Score=40.04  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|.|+|++|..++.-.-..|+.++..+|.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            678999999999999988888889887877765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK13018 cell division protein FtsZ; Provisional

Probab=89.96  E-value=2.3  Score=40.42  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~   65 (288)
                      ..+.+|.|||+||.|+.++.+|...|+.  .+..++.|.
T Consensus        26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~   64 (378)
T PRK13018         26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA   64 (378)
T ss_pred             cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence            4568999999999999999999999976  456667665

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=89.96  E-value=2.5  Score=38.41  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=59.0

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|||.|+ |-+|+.+++.|...|  +++.+|....        +  ...|+   -  ..+.+.+.+++..|++-+..-..
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl---~--d~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDF---S--NPEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCC---C--CHHHHHHHHHhcCCCEEEECCcc
Confidence            6999996 779999999999888  5777775311        1  12344   2  23455566666666644432211


Q ss_pred             C-CC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          112 D-LS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       112 ~-~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      . ..  +..++...        ..+......+.+.|++  .+++||..++...||
T Consensus        65 ~~~~~~~~~~~~~~--------~~N~~~~~~l~~aa~~--~g~~~v~~Ss~~Vy~  109 (299)
T PRK09987         65 TAVDKAESEPEFAQ--------LLNATSVEAIAKAANE--VGAWVVHYSTDYVFP  109 (299)
T ss_pred             CCcchhhcCHHHHH--------HHHHHHHHHHHHHHHH--cCCeEEEEccceEEC
Confidence            0 00  00001000        0123334567789988  778898877755443

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=89.94  E-value=1.1  Score=38.95  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r   37 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR   37 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            57889999996 6899999999999997 5777764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=89.85  E-value=3.3  Score=38.24  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            47999995 679999999999999776666664

>PRK06932 glycerate dehydrogenase; Provisional

Probab=89.83  E-value=0.34  Score=44.89  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=30.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|..++|.|+|.|.+|.++|+-+.-.|+. +..+|.
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~  178 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEH  178 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECC
Confidence            479999999999999999999999888875 555553

>PRK07024 short chain dehydrogenase; Provisional

Probab=89.78  E-value=1.4  Score=38.70  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=27.7

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789988 67899999999999997 58888753

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=89.76  E-value=1.3  Score=40.77  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|.|+ |.+|+++++.|+..|.. ++++|.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r   38 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR   38 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence            35678999995 78999999999999975 666664

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.74  E-value=2.6  Score=37.89  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|+.++|.|.|.|.+|+.+++.|...|..-+.+.|.
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3578899999999999999999999999876668885

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=89.72  E-value=1.4  Score=39.74  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             CcEEEEc-CchHHHHHHHHHHH-hCCCeEEEEc
Q 023036           32 SHILVCG-MKGTVAEFCKNIVL-AGVGSLTLMD   62 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l-~Gvg~i~lvD   62 (288)
                      -+|.|+| +|.+|..+++.+.. .++.=+.++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3799999 59999999999985 6777666777

>PRK08703 short chain dehydrogenase; Provisional

Probab=89.69  E-value=1.9  Score=37.34  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r   38 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVAR   38 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            366789999995 6899999999999997 4777765

>PRK08643 acetoin reductase; Validated

Probab=89.65  E-value=1.5  Score=38.41  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=26.4

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r   34 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY   34 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788888 56899999999999997 4777764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.63  E-value=2  Score=38.08  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM---KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~---gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.++.++|.|+   +|+|.++++.|+..|.. +.+++.
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~r   41 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYA   41 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEecC
Confidence            56789999997   59999999999999974 777653

>PLN02858 fructose-bisphosphate aldolase

Probab=89.60  E-value=1.9  Score=47.81  Aligned_cols=115  Identities=11%  Similarity=0.127  Sum_probs=67.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|.+||+|.+|..+|+||+..|.. ++++|...-....+..        .   |-..+...++..+.  .++-+....
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~a~~--advVi~~l~   69 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFK-VQAFEISTPLMEKFCE--------L---GGHRCDSPAEAAKD--AAALVVVLS   69 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEEcC
Confidence            56899999999999999999999954 8888764222222111        1   22222222222221  122233322


Q ss_pred             cCC--CCc---chhh---hccCcEEEEec-CChhhHHHHHHHHHhcCCC--ceEEEEeeecc
Q 023036          111 GDL--SSL---DGEF---YDKFDVVVVSC-CSVTTKKLINEKCRKLSKR--VAFYTVDCRDS  161 (288)
Q Consensus       111 ~~~--~~~---~~~~---~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~--ip~i~~~~~G~  161 (288)
                      ..-  .+.   ....   +..=.+||+++ .++....++.+.+.+  ++  +.|+++-..|.
T Consensus        70 ~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~--~g~~~~~lDaPVsGg  129 (1378)
T PLN02858         70 HPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE--RKEQIFLVDAYVSKG  129 (1378)
T ss_pred             ChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh--cCCceEEEEccCcCC
Confidence            210  000   0111   22235666654 567888899999988  78  89999998885

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=89.52  E-value=2.8  Score=40.61  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +..+|+|.|. |-+|+.+++.|...|. +++.+|.
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr  152 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDN  152 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3468999995 6799999999999985 5777875

>PRK06196 oxidoreductase; Provisional

Probab=89.48  E-value=1.5  Score=40.10  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R   58 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPAR   58 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            466788999996 68999999999999974 777764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=89.47  E-value=0.5  Score=44.08  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=29.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      .|+|||.|.+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 5999998644

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.43  E-value=1.2  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..++|||+|+|.+|--...-+--.|..++.++|-
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~  202 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL  202 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence            4789999999999999999999999999999985

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.39  E-value=2.3  Score=43.78  Aligned_cols=32  Identities=16%  Similarity=0.039  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|..|+.||-.++ .+|+. ++++|.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~  342 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDIN  342 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCC
Confidence            67999999999999999999 88976 9999973

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=89.36  E-value=0.98  Score=39.64  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.| .|++|..+++.|+..|.. +.++|.
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r   43 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI   43 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            36789999999 558999999999999975 666653

>PRK07589 ornithine cyclodeaminase; Validated

Probab=89.35  E-value=2.1  Score=40.21  Aligned_cols=75  Identities=12%  Similarity=0.095  Sum_probs=54.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..+++|+|+|..+-.-++.+. .-.+.++.+++.                      ...|++..++++++.  .+++...
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~~  184 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAGP--GLRIVAC  184 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHhc--CCcEEEe
Confidence            578999999999988776554 346778888764                      555788888888763  3444443


Q ss_pred             ecCCCCcchhhhccCcEEEEecCCh
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      .     ..++.+.+.|+|+.|+.+.
T Consensus       185 ~-----~~~~av~~ADIIvtaT~S~  204 (346)
T PRK07589        185 R-----SVAEAVEGADIITTVTADK  204 (346)
T ss_pred             C-----CHHHHHhcCCEEEEecCCC
Confidence            2     2467788999999988653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.32  E-value=0.4  Score=40.50  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+++++|+|||.|..|.+++.+|+..| .+++++=.
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R  198 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTR  198 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEec
Confidence            4688999999999999999999999999 88998743

...

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=89.25  E-value=0.35  Score=41.25  Aligned_cols=84  Identities=15%  Similarity=0.051  Sum_probs=43.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccccc--ccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSAN--FLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~--f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+|.|+|+|=+|...|-.|+..|.. ++-+|.+.-....+++.  ++ .+..+       .+.+.+.++.    -+..+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g~~p~-~E~~l-------~~ll~~~~~~----~~l~~t   67 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNGELPI-YEPGL-------DELLKENVSA----GRLRAT   67 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTTSSSS--CTTH-------HHHHHHHHHT----TSEEEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhccccc-cccch-------hhhhcccccc----ccchhh
Confidence            3799999999999999999999954 88888766544444433  33 22212       1223333321    123322


Q ss_pred             ecCCCCcchhhhccCcEEEEecCC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      .     ...+.+++.|++|+|..+
T Consensus        68 ~-----~~~~ai~~adv~~I~VpT   86 (185)
T PF03721_consen   68 T-----DIEEAIKDADVVFICVPT   86 (185)
T ss_dssp             S-----EHHHHHHH-SEEEE----
T ss_pred             h-----hhhhhhhccceEEEecCC
Confidence            1     123447789999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=89.24  E-value=5.4  Score=35.02  Aligned_cols=33  Identities=12%  Similarity=0.248  Sum_probs=26.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEE
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lv   61 (288)
                      .....+|+|.|+ |.+|..+++.|+..|.. ++.+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~   47 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG   47 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence            345678999995 88999999999998854 4443

>PRK05872 short chain dehydrogenase; Provisional

Probab=89.22  E-value=1.9  Score=39.09  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL   41 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            367889999995 7899999999999997 5777764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=89.17  E-value=0.69  Score=43.03  Aligned_cols=35  Identities=11%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE   68 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~   68 (288)
                      .|+|||.|-+|+.+|..|+..|. +++|+|.+.+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~~   36 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRAQ   36 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCC
Confidence            59999999999999999999996 599999877643

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=89.14  E-value=2.3  Score=40.55  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +..+|+|+|+ |.+|.|+++.|......+++.+-.+               ...   |+.        +...+|.+....
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~   90 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD   90 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence            4559999997 5699999999988866667776431               111   321        111222211100


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                       ...+.+...+.+++.|+|+.+..+......+..+  +  .+.++|+..+
T Consensus        91 -~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~--~g~~VIDlSs  135 (381)
T PLN02968         91 -LPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL--P--KDLKIVDLSA  135 (381)
T ss_pred             -ccceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH--h--CCCEEEEcCc
Confidence             0111122233358899999998775555555543  3  4566665443

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=89.06  E-value=1.1  Score=39.18  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++.+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            367889999995 6899999999999997 58888763

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=89.06  E-value=2.8  Score=38.18  Aligned_cols=95  Identities=14%  Similarity=0.211  Sum_probs=58.0

Q ss_pred             cEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|||.|.+| +|.++++.|.  +-..+.-.|...+                   .-.-.+.+.+.+++..|++-|++-.-
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-------------------Ditd~~~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAEL-------------------DITDPDAVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCccc-------------------cccChHHHHHHHHhhCCCEEEECccc
Confidence            499999765 9999999998  4344555554332                   22344567889999999876664321


Q ss_pred             -CCC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          112 -DLS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       112 -~~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                       .++  +..++.  .|.      -|-.....+.+.|++  .+.++|..+|
T Consensus        61 t~vD~aE~~~e~--A~~------vNa~~~~~lA~aa~~--~ga~lVhiST  100 (281)
T COG1091          61 TAVDKAESEPEL--AFA------VNATGAENLARAAAE--VGARLVHIST  100 (281)
T ss_pred             cccccccCCHHH--HHH------hHHHHHHHHHHHHHH--hCCeEEEeec
Confidence             111  111110  000      122334567789999  8999998775

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=89.04  E-value=6  Score=33.65  Aligned_cols=94  Identities=17%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhC-CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~G-vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+.+|+-+|+|. |.-.+..+.+.| -++++-+|.                      -....+.+.+++++.+-.-++..
T Consensus        40 ~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~----------------------~~~~~~~a~~n~~~~g~~~~v~~   96 (198)
T PRK00377         40 KGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDK----------------------DEKAINLTRRNAEKFGVLNNIVL   96 (198)
T ss_pred             CcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEEC----------------------CHHHHHHHHHHHHHhCCCCCeEE
Confidence            567899999976 443333322333 357888885                      22344555666655441113333


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ...+..+.....-..||.|+...........+...++.
T Consensus        97 ~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~  134 (198)
T PRK00377         97 IKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEI  134 (198)
T ss_pred             EEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHH
Confidence            33333221112124699999855332333344444443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.03  E-value=0.59  Score=45.65  Aligned_cols=36  Identities=11%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|..++|+|+|+|.+|..+|+.|...|. +++++|.+
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d  286 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID  286 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999999999999999999999998 58888653

>PRK05650 short chain dehydrogenase; Provisional

Probab=89.00  E-value=1.5  Score=38.92  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r   32 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWR-LALADV   32 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            6889884 78999999999999975 666654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.99  E-value=3  Score=38.23  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=29.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|.|+|++|..++.-+-..|..++..+|.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~  196 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP  196 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3679999999999999999999999887777764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.97  E-value=2.7  Score=40.99  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            457899999999999999999999975 9999864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=88.96  E-value=3.1  Score=37.17  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=23.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      .+.+|+.+|+|+ |..+.......|. ++++-+|.
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~  110 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM  110 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC
Confidence            567999999998 7655544444565 36888885

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=88.95  E-value=2.6  Score=41.11  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+.+|+|||.|..|.+.|..|.+.|.. ++|+|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            467899999999999999999999975 8998864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=88.94  E-value=3.3  Score=38.73  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccccccc----CCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFL----IPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~----~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ...+|.|+|+||+|-....-...+|.++|.-+|...- .-++.+.|-    ++..+.   +     -+.+.++++.+.  
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT~~vn~~~~---~-----~vv~~i~~~T~g--  253 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGATHFVNPKEV---D-----DVVEAIVELTDG--  253 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCceeecchhh---h-----hHHHHHHHhcCC--
Confidence            4578999999999999999999999999999986322 222233222    222211   1     133344443321  


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL  147 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~  147 (288)
                                       +.|.+|.|..+.+....--+.|++|
T Consensus       254 -----------------G~d~~~e~~G~~~~~~~al~~~~~~  278 (366)
T COG1062         254 -----------------GADYAFECVGNVEVMRQALEATHRG  278 (366)
T ss_pred             -----------------CCCEEEEccCCHHHHHHHHHHHhcC
Confidence                             6889999999988877777788773

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=88.90  E-value=2.5  Score=40.60  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|+|+|+.|..+|+.|...|. +++..|.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~   30 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA-EVTVTDL   30 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeC
Confidence            58999999999999999999997 4888885

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=88.90  E-value=3.2  Score=39.02  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|.|. |-+|+.+++.|...|. .++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4578999996 7899999999999985 5888774

>PRK07074 short chain dehydrogenase; Provisional

Probab=88.90  E-value=2.1  Score=37.41  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r   34 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI   34 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467999996 6899999999999995 5888775

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=88.88  E-value=0.78  Score=41.66  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      ||||+|+ |-+|+.+.+.|...|.. +.-++..                ++   .-...+.+.+.+.+..|++-|..-..
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~----------------~~---dl~d~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYE-VIATSRS----------------DL---DLTDPEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT----------------CS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch----------------hc---CCCCHHHHHHHHHHhCCCeEecccee
Confidence            7999995 77999999999998855 3333432                12   22345677888888888765554311


Q ss_pred             C-CC--CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036          112 D-LS--SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (288)
Q Consensus       112 ~-~~--~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~  162 (288)
                      . ++  +.+++..-.        .+......+.++|.+  .++++|..++...|
T Consensus        62 ~~~~~ce~~p~~a~~--------iN~~~~~~la~~~~~--~~~~li~~STd~VF  105 (286)
T PF04321_consen   62 TNVDACEKNPEEAYA--------INVDATKNLAEACKE--RGARLIHISTDYVF  105 (286)
T ss_dssp             --HHHHHHSHHHHHH--------HHTHHHHHHHHHHHH--CT-EEEEEEEGGGS
T ss_pred             ecHHhhhhChhhhHH--------HhhHHHHHHHHHHHH--cCCcEEEeeccEEE
Confidence            0 00  001100000        123344577889999  99999998887654

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.84  E-value=0.53  Score=42.82  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence            4699999999999999999999987 899987543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK09126 hypothetical protein; Provisional

Probab=88.81  E-value=0.54  Score=44.16  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      .+..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            457899999999999999999999986 899987543

>PRK08628 short chain dehydrogenase; Provisional

Probab=88.79  E-value=1.6  Score=38.22  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.| .|++|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r   39 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR   39 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence            36788999999 468999999999999975 566554

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.77  E-value=1.4  Score=38.92  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++++++|.|+ +++|.++++.|+..|.. +.++|.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~   42 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI   42 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            467788999995 58999999999999975 666653

>PRK07890 short chain dehydrogenase; Provisional

Probab=88.76  E-value=1.3  Score=38.66  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|..+++.|+.-|. ++.++|.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r   37 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR   37 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            56788999995 6899999999999997 5888874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.76  E-value=0.57  Score=45.73  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ......+|+|||+|..|...|+.|...|. ++++++.
T Consensus         6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~   41 (461)
T PLN02172          6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFER   41 (461)
T ss_pred             cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEec
Confidence            35667899999999999999999999997 5888885

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=88.73  E-value=2.4  Score=41.13  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            45789999999999999999999996 59999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=88.72  E-value=2.4  Score=43.96  Aligned_cols=60  Identities=10%  Similarity=0.093  Sum_probs=40.7

Q ss_pred             CCCCHHHHHhhhhhhhh----ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036            4 EELTEQETALYDRQIRV----WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl----~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.++-...+||--....    +-......-...+|+|||+|..|...|..|++.|.. ++|+|..
T Consensus       400 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~-V~v~e~~  463 (752)
T PRK12778        400 EAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYD-VTVFEAL  463 (752)
T ss_pred             CCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            34666666775533111    000111123567899999999999999999999975 9999973

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=88.70  E-value=8.2  Score=34.22  Aligned_cols=32  Identities=13%  Similarity=0.084  Sum_probs=24.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+-+|||. |. ++..+++.|.++++-+|.
T Consensus       119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDi  150 (250)
T PRK00517        119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDI  150 (250)
T ss_pred             CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEEC
Confidence            678999999997 64 444577788888888886

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=88.68  E-value=4.4  Score=41.28  Aligned_cols=41  Identities=10%  Similarity=0.050  Sum_probs=30.8

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        23 ~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+-..-++.+|+|.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus       307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            34445567788999995 779999999999864235777775

>PRK14031 glutamate dehydrogenase; Provisional

Probab=88.67  E-value=2.3  Score=41.30  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|.|-+|+..|+.|...|..-+.+-|.
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~  260 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS  260 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999999999999999999999887777774

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=88.65  E-value=1.3  Score=40.30  Aligned_cols=109  Identities=11%  Similarity=0.112  Sum_probs=51.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH-Hh---hhCCCcee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS-LK---DFNPMVRV  106 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~-l~---~lNp~v~v  106 (288)
                      ++|++||+|++-....--....|.+ .++=+|.|.                       .|...+++ ++   .+..  .+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~-----------------------~A~~~a~~lv~~~~~L~~--~m  176 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP-----------------------EANELARRLVASDLGLSK--RM  176 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH-----------------------HHHHHHHHHHH---HH-S--SE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH-----------------------HHHHHHHHHHhhcccccC--Ce
Confidence            5999999998776655555555654 344556421                       12222222 22   2333  34


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCCh----hhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV----TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~----~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      ..+..+..+.. .-+++||+|+.+..-.    +-...+..+.+.++.+..++.-...|+.++.|
T Consensus       177 ~f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LY  239 (276)
T PF03059_consen  177 SFITADVLDVT-YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLY  239 (276)
T ss_dssp             EEEES-GGGG--GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS
T ss_pred             EEEecchhccc-cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcC
Confidence            55554443322 2367999999986432    44455666777666788888878888877544

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PLN02650 dihydroflavonol-4-reductase

Probab=88.62  E-value=6.6  Score=36.27  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=25.9

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|.|+ |.+|+.+++.|+..|.. +++++.
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r   37 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGYT-VRATVR   37 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence            568999995 78999999999999964 665543

>PRK06184 hypothetical protein; Provisional

Probab=88.60  E-value=0.59  Score=45.84  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ....|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            457899999999999999999999996 8999864

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=88.59  E-value=2.1  Score=39.43  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~   65 (288)
                      +|.|||.||-|+.++..|.+.|+..  +..+|.|.
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~   36 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDA   36 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence            6899999999999999999999863  44556654

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PRK06523 short chain dehydrogenase; Provisional

Probab=88.56  E-value=1.3  Score=38.84  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~   42 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARS   42 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCC
Confidence            477889999995 69999999999999975 8888764

>PRK08264 short chain dehydrogenase; Validated

Probab=88.55  E-value=0.63  Score=40.26  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.+++|+|.| .|++|.++++.|+..|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            5678999999 57899999999999998678888754

>PRK06823 ornithine cyclodeaminase; Validated

Probab=88.53  E-value=2.7  Score=38.96  Aligned_cols=77  Identities=13%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ..+++.|+|+|..+-..++.+.. -.+.++.++|.                      ...|++..++.+++..  +.+..
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~~--~~v~~  182 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQALG--FAVNT  182 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhcC--CcEEE
Confidence            35889999999999888887653 35677777664                      4557888888877653  33433


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      .     +...+...+.|+|+.|+.+.+
T Consensus       183 ~-----~~~~~av~~ADIV~taT~s~~  204 (315)
T PRK06823        183 T-----LDAAEVAHAANLIVTTTPSRE  204 (315)
T ss_pred             E-----CCHHHHhcCCCEEEEecCCCC
Confidence            3     224667889999999886543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.51  E-value=0.63  Score=44.75  Aligned_cols=34  Identities=9%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +...+|+|+|+|.+|..+++.+...|. +++++|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~  233 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEV  233 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            468899999999999999999999999 5888876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=88.50  E-value=3.9  Score=37.71  Aligned_cols=31  Identities=10%  Similarity=0.102  Sum_probs=25.7

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|.|+ |.+|+.+++.|...|. +++.+|.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r   32 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR   32 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence            37899985 6799999999999996 4777764

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=88.50  E-value=1.7  Score=46.38  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~  571 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFERE  571 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecc
Confidence            46789999999999999999999997 59999864

>PRK07236 hypothetical protein; Provisional

Probab=88.39  E-value=0.65  Score=43.76  Aligned_cols=36  Identities=14%  Similarity=0.015  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +...+|+|||+|..|..+|..|++.|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4568899999999999999999999986 89998654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=88.37  E-value=5.1  Score=36.24  Aligned_cols=78  Identities=12%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+|.+||+|.+|..++.-|..+|.   ..|.+.|+                      ...|..    .+.+..+-. +  
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~--   52 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T--   52 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence            479999999999999999999994   46666554                      111222    333333322 1  


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHH
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEK  143 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~  143 (288)
                           ...+.+.....|+||++.-+......+.++
T Consensus        53 -----~~~~~~~~~~advv~LavKPq~~~~vl~~l   82 (266)
T COG0345          53 -----TTDNQEAVEEADVVFLAVKPQDLEEVLSKL   82 (266)
T ss_pred             -----cCcHHHHHhhCCEEEEEeChHhHHHHHHHh
Confidence                 122456777899999998775544444443

>PRK08324 short chain dehydrogenase; Validated

Probab=88.28  E-value=4.2  Score=41.66  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r  454 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL  454 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            3457899999 58999999999999997 5888875

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=88.26  E-value=3.1  Score=38.90  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|.|+|++|..++.-+...|..++..+|.
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            578999999999999988888899877877764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=88.25  E-value=2.9  Score=40.41  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             cEEEEcCchHHHH-HHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGse-iaknL~l~Gvg~i~lvD~   63 (288)
                      +|.++|.|+.|.. +|+.|...|.. ++..|.
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~-v~~~D~   31 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQ-VSGSDI   31 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCe-EEEECC
Confidence            5889999999998 99999999976 788775

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PLN02775 Probable dihydrodipicolinate reductase

Probab=88.24  E-value=2.5  Score=38.62  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=57.2

Q ss_pred             CcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCccccc------ccccCCCCccccCCCcHHHHHHHHHhhhCCC-
Q 023036           32 SHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS------ANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-  103 (288)
Q Consensus        32 ~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~------r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~-  103 (288)
                      -+|.|.|+. -.|.++++.+...|..=+-.+|... ...|+.      .-..+.++|+       . .+...+...+|+ 
T Consensus        12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-~~~~~~~~~~g~~v~~~~~~dl-------~-~~l~~~~~~~~~~   82 (286)
T PLN02775         12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-AGVGVTVEVCGVEVRLVGPSER-------E-AVLSSVKAEYPNL   82 (286)
T ss_pred             CeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-ccccccceeccceeeeecCccH-------H-HHHHHhhccCCCE
Confidence            489999965 5999999999885543333333222 111111      0001111221       1 222222222676 


Q ss_pred             ceeeeeecCCCCcchhh--hccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          104 VRVSVEKGDLSSLDGEF--YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~--~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      |-|+.........+..+  -.+..+||.|+.-.+.  .+.++|.+  .++|++.+..+..
T Consensus        83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e--~l~~~~~~--~~i~vv~apNfSi  138 (286)
T PLN02775         83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD--RLLKDVEE--SGVYAVIAPQMGK  138 (286)
T ss_pred             EEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHhc--CCccEEEECcccH
Confidence            54544322111111111  1356677777653222  44566666  7788887777653

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.21  E-value=3.6  Score=39.58  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.+++|+|+|.|+.|...++.|...|. +++..|..
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            457789999999999999999999996 58888863

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=88.19  E-value=0.88  Score=39.94  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +.+++|+|.|+ |++|.++++.|+..|.. +.++|.+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~   40 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP   40 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence            56788999995 79999999999999974 77877543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=88.18  E-value=2.5  Score=39.57  Aligned_cols=31  Identities=10%  Similarity=0.048  Sum_probs=23.1

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeE-EEEc
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSL-TLMD   62 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i-~lvD   62 (288)
                      .+|+|+|+ |.+|.++++.|....--++ .+.|
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            58999997 7799999999987633334 3344

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.08  E-value=3.8  Score=36.70  Aligned_cols=34  Identities=18%  Similarity=0.141  Sum_probs=29.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|+..+..+|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            5679999999999999999888899987877764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=88.01  E-value=2.8  Score=36.96  Aligned_cols=34  Identities=12%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      .|++++|+|.|+ +|+|.++++.|+..|.. +.+++
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~   39 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTY   39 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            477889999995 68999999999999975 65553

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=88.01  E-value=0.86  Score=45.38  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      ...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            4679999999999999999999997 59999976543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=87.99  E-value=4.6  Score=37.78  Aligned_cols=22  Identities=14%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh
Q 023036           32 SHILVCGMKGTVAEFCKNIVLA   53 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~   53 (288)
                      -+|.|+|+|.+|..+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999999765

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=87.94  E-value=0.64  Score=43.68  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence            45799999999999999999999975 99999764

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.87  E-value=0.54  Score=45.16  Aligned_cols=36  Identities=8%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|+|+|.+|.++|+.+...|+. +..+|.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~  182 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDI  182 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            469999999999999999999999988874 777775

>PRK13984 putative oxidoreductase; Provisional

Probab=87.86  E-value=3  Score=41.97  Aligned_cols=35  Identities=9%  Similarity=0.097  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...+|+|||+|..|...|..|.+.|.. ++|+|...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~-v~vie~~~  316 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYE-VTVYESLS  316 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEecCC
Confidence            467899999999999999999999975 89997643

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=87.79  E-value=2.7  Score=39.15  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             hcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+++|||-|++| +|+.|+|.|...|-.-...+.+               +      +..|-......|....+  +...
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~---------------~------~~~k~~~~L~~l~~a~~--~l~l   61 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRD---------------P------EDEKKTEHLRKLEGAKE--RLKL   61 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcC---------------c------chhhhHHHHHhcccCcc--cceE
Confidence            578999999877 9999999999999763333322               1      22222222233332222  2555


Q ss_pred             eecCCCCcc--hhhhccCcEEEEecCChh--------h--------HHHHHHHHHhcCCC--ceEEEEeeecceEE
Q 023036          109 EKGDLSSLD--GEFYDKFDVVVVSCCSVT--------T--------KKLINEKCRKLSKR--VAFYTVDCRDSCGE  164 (288)
Q Consensus       109 ~~~~~~~~~--~~~~~~~dvVi~~~~~~~--------~--------~~~i~~~~~~~~~~--ip~i~~~~~G~~G~  164 (288)
                      ...++.+..  +.-++++|.|+-+..+..        .        ..-+-+.|.+  ..  .++|.+.+..-..+
T Consensus        62 ~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~--~~sVkrvV~TSS~aAv~~  135 (327)
T KOG1502|consen   62 FKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKK--TKSVKRVVYTSSTAAVRY  135 (327)
T ss_pred             EeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhc--cCCcceEEEeccHHHhcc
Confidence            566665432  566889999987654311        1        1245568877  54  67887777654443

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=87.77  E-value=3.1  Score=38.54  Aligned_cols=33  Identities=12%  Similarity=-0.073  Sum_probs=27.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|.-++..+.. .|..+++++|.
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~  197 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK  197 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            6789999999999998888775 57677888875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=87.77  E-value=0.78  Score=43.54  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~   65 (288)
                      |++.+|+|||.|..|..+|..|.+.|. ++|+|+|...
T Consensus         1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            356789999999999999999999987 4899998754

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=87.76  E-value=2.4  Score=36.50  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEE
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM   61 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lv   61 (288)
                      +.+++|+|.| .|++|.++++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~   35 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN   35 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            4567899999 468999999999999976 4444

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.71  E-value=2.5  Score=41.15  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|+|+|-.|..+++.|.. |. ++++.|.
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~   36 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDD   36 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECC
Confidence            36789999999999999999995 86 5899985

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=87.71  E-value=0.2  Score=44.71  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus         6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++.++..|.+.+.-+..-...  +.++|||+|.|+ |+-+-.-+-..++.+++++|-
T Consensus        54 ~~e~de~~y~e~l~h~~~~~~~--~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEi  108 (246)
T PF01564_consen   54 LSERDEFIYHEMLVHPPLLLHP--NPKRVLIIGGGD-GGTARELLKHPPVESITVVEI  108 (246)
T ss_dssp             EETTTHHHHHHHHHHHHHHHSS--ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES
T ss_pred             EEEechHHHHHHHhhhHhhcCC--CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEec
Confidence            4555667888877655554433  688999999765 333333333445899999985

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK07677 short chain dehydrogenase; Provisional

Probab=87.69  E-value=1.7  Score=37.97  Aligned_cols=33  Identities=12%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            357899985 5799999999999998 68887753

>PRK13529 malate dehydrogenase; Provisional

Probab=87.68  E-value=0.55  Score=46.66  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             HHhhhhhhhhccHHHH------------------HHHhcCcEEEEcCchHHHHHHHHHHH----hCC------CeEEEEc
Q 023036           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD   62 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q------------------~~L~~~~VlIiG~gglGseiaknL~l----~Gv------g~i~lvD   62 (288)
                      .++|..++..|-.+-|                  ++|++.+|++.|+|+.|.-||+.|+.    .|+      .+|.++|
T Consensus       257 L~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD  336 (563)
T PRK13529        257 LERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVD  336 (563)
T ss_pred             HHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence            4677777777755433                  47889999999999999999999997    599      5899999


Q ss_pred             CCc
Q 023036           63 DRV   65 (288)
Q Consensus        63 ~d~   65 (288)
                      .+-
T Consensus       337 ~~G  339 (563)
T PRK13529        337 RQG  339 (563)
T ss_pred             CCC
Confidence            853

>PLN02858 fructose-bisphosphate aldolase

Probab=87.68  E-value=3  Score=46.24  Aligned_cols=117  Identities=11%  Similarity=0.053  Sum_probs=63.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      -.+|.+||+|.+|..+|++|+..|. .++++|...-....+..        .   |-..+....+.++  +.++-+....
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~~~--~aDvVi~~V~  389 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNF-SVCGYDVYKPTLVRFEN--------A---GGLAGNSPAEVAK--DVDVLVIMVA  389 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHh--cCCEEEEecC
Confidence            4679999999999999999999997 58888864321111111        0   2111111111111  1233333333


Q ss_pred             cCCC--Cc---ch---hhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          111 GDLS--SL---DG---EFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       111 ~~~~--~~---~~---~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ....  +.   ..   ..+..-.+||+++ .++...+.+.+.+.+..+++.|+++-..|.
T Consensus       390 ~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg  449 (1378)
T PLN02858        390 NEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGG  449 (1378)
T ss_pred             ChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCC
Confidence            2110  00   01   1122335666654 456677777777754335778888877664

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=87.67  E-value=3.2  Score=44.44  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...+|+|||.|..|...|..|++.|. +++|+|...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            34689999999999999999999996 599999743

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=87.66  E-value=4.5  Score=39.07  Aligned_cols=39  Identities=8%  Similarity=-0.066  Sum_probs=31.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~   72 (288)
                      .+|.|||+|-+|..+|.+|+. | ..++.+|.+.-..+.+.
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~-~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-S-RQVVGFDVNKKRILELK   45 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-C-CEEEEEeCCHHHHHHHH
Confidence            579999999999999999887 6 77999887554444443

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.64  E-value=0.64  Score=46.16  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|+|+|.+|.++|+.|...|+ ++..+|+
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~  171 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP  171 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence            36899999999999999999999999987 4777776

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=87.63  E-value=2.7  Score=31.53  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=26.5

Q ss_pred             hcCcEEEEcCchHHHHHHH-HHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCK-NIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiak-nL~l~Gvg~i~lvD~   63 (288)
                      +..+|+|+|+|++|..++. .....|.+-..++|.
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv   36 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV   36 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc
Confidence            3578999999999998874 345678787777775

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=87.62  E-value=2.3  Score=36.96  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~   34 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG   34 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4799999 57899999999999997 58888763

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=87.60  E-value=3.1  Score=38.23  Aligned_cols=78  Identities=8%  Similarity=-0.042  Sum_probs=56.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...++.|+|+|..|-.-++.+.. -++.++.|+|.                      ...|++..++++++.. .+++..
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~  172 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRP  172 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence            45789999999999988777763 46788888775                      5557888888887643 234444


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      ..     ..++...+.|+|+.++.+.+
T Consensus       173 ~~-----~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        173 VD-----NAEAALRDADTITSITNSDT  194 (301)
T ss_pred             eC-----CHHHHHhcCCEEEEecCCCC
Confidence            32     24677889999999886543

>TIGR00417 speE spermidine synthase

Probab=87.58  E-value=2.7  Score=37.88  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             HHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcC
Q 023036           10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (288)
Q Consensus        10 e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~   63 (288)
                      +.-.|.+-+.-.+.-.+.  ...+||++|+|. |. +++.++.. ++.+++++|-
T Consensus        54 ~e~~y~e~l~~~~l~~~~--~p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~vei  104 (270)
T TIGR00417        54 DEFIYHEMIAHVPLFTHP--NPKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDI  104 (270)
T ss_pred             hHHHHHHHhhhhHhhcCC--CCCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeC
Confidence            334555544333222222  345999999985 33 33444444 4788999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.57  E-value=0.68  Score=42.27  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence            46889999999999 99999999999998 8999975

>PRK08013 oxidoreductase; Provisional

Probab=87.55  E-value=0.68  Score=43.92  Aligned_cols=35  Identities=11%  Similarity=0.235  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ....|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~   36 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV   36 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence            346899999999999999999999986 89999654

>PRK12743 oxidoreductase; Provisional

Probab=87.54  E-value=2.5  Score=37.04  Aligned_cols=31  Identities=10%  Similarity=0.061  Sum_probs=24.9

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      .++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~   33 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITW   33 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            457899885 58999999999999975 55553

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=87.51  E-value=1.8  Score=41.77  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             cEEEEcCchHHHHHHH--HHHHh-CC--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHH----HHHHhhhCCC
Q 023036           33 HILVCGMKGTVAEFCK--NIVLA-GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC----CDSLKDFNPM  103 (288)
Q Consensus        33 ~VlIiG~gglGseiak--nL~l~-Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~----~~~l~~lNp~  103 (288)
                      +|.|||+|++|...+-  .++.. +.  ..++|+|.+.                      .+++..    .+.+....+.
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~----------------------e~l~~~~~~~~~~~~~~~~~   59 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE----------------------ERLETVEILAKKIVEELGAP   59 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH----------------------HHHHHHHHHHHHHHHhcCCC
Confidence            6999999999887554  45421 22  4799998522                      122222    2233333444


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .++...+.     ..+.++++|+||.+..
T Consensus        60 ~~I~~ttD-----~~eal~~AD~Vi~ai~   83 (423)
T cd05297          60 LKIEATTD-----RREALDGADFVINTIQ   83 (423)
T ss_pred             eEEEEeCC-----HHHHhcCCCEEEEeeE
Confidence            44443221     2456789999998864

linked to 3D####ucture

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=87.51  E-value=2.1  Score=37.11  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=25.3

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEE
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~l   60 (288)
                      |+++.++|.|+ |++|..+++.|+..|.. +.+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~   32 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA   32 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence            35678899985 79999999999999975 444

>PLN02494 adenosylhomocysteinase

Probab=87.46  E-value=0.84  Score=44.58  Aligned_cols=36  Identities=11%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +.+++|+|+|+|.+|..+|+.+...|+ +++++|.+.
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578999999999999999999999998 588887643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=87.42  E-value=0.7  Score=38.60  Aligned_cols=39  Identities=13%  Similarity=0.155  Sum_probs=29.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      -.|..++++|+|.|-+|.-+|+.|...|.. ++++|-|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi   57 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPI   57 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChH
Confidence            357788999999999999999999999955 899887654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=87.41  E-value=0.93  Score=46.73  Aligned_cols=32  Identities=13%  Similarity=0.040  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|..|+.||-.++.+|+. ++++|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~  345 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDIN  345 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCC
Confidence            4699999999999999999999976 9999974

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK09291 short chain dehydrogenase; Provisional

Probab=87.40  E-value=2.7  Score=36.64  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=24.9

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +++|+|.|+ |++|..+++.|+..|.. +.+.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            457999995 68999999999999965 55444

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=87.38  E-value=0.64  Score=46.14  Aligned_cols=55  Identities=24%  Similarity=0.325  Sum_probs=44.5

Q ss_pred             HHhhhhhhhhccHHHH------------------HHHhcCcEEEEcCchHHHHHHHHHH----HhCC------CeEEEEc
Q 023036           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIV----LAGV------GSLTLMD   62 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q------------------~~L~~~~VlIiG~gglGseiaknL~----l~Gv------g~i~lvD   62 (288)
                      .++|..++..|-.+-|                  ++|++.+|++.|+|+.|.-||+.|+    ..|+      .+|.++|
T Consensus       259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD  338 (559)
T PTZ00317        259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD  338 (559)
T ss_pred             HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence            4677767777755443                  4788999999999999999999988    4799      7999999


Q ss_pred             CCc
Q 023036           63 DRV   65 (288)
Q Consensus        63 ~d~   65 (288)
                      .+-
T Consensus       339 ~~G  341 (559)
T PTZ00317        339 SKG  341 (559)
T ss_pred             CCC
Confidence            753

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=87.34  E-value=0.94  Score=43.95  Aligned_cols=43  Identities=12%  Similarity=-0.004  Sum_probs=35.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCCcCCccccccc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSAN   74 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~   74 (288)
                      ...|+|||.|-+|..+|..|++.  | .+++|+|.+.+....-+||
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G-~~V~vlE~~~~g~GaSgrn   68 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPA-LDVLVLEADLCGAGASGRN   68 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCC-CeEEEEeCCcccccccccc
Confidence            35799999999999999999998  6 4699999887755554554

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=87.31  E-value=0.85  Score=44.15  Aligned_cols=32  Identities=25%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|+|||+|-.|+|+|..|++.|+. ++|++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence            3799999999999999999999976 8888843

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07791 short chain dehydrogenase; Provisional

Probab=87.29  E-value=2.7  Score=37.84  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++++|.|+ +|+|.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~   38 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDI   38 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeC
Confidence            467788999985 58999999999999974 777664

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=87.29  E-value=0.9  Score=45.17  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=24.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++||+|||+|..|-..+|+|...|+. +++++.
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~-~~~fE~   32 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLE-VTCFEK   32 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-E-EEEEES
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCC-CeEEec
Confidence            47999999999999999999999985 788875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=87.28  E-value=0.84  Score=43.02  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...|+|||.|..|..+|-.|++.|+. ++|+|...
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~-v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRS-VAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc-EEEEcCCC
Confidence            45799999999999999999999975 99999653

>PLN02366 spermidine synthase

Probab=87.25  E-value=1.4  Score=40.77  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             CCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCC
Q 023036            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR   64 (288)
Q Consensus         6 l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d   64 (288)
                      +++.+.-.|.+.+.-.....  .=...+||+||+|. |. +++.+++ .++.+++++|-|
T Consensus        69 ~~~~de~~Y~e~l~h~~l~~--~~~pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD  124 (308)
T PLN02366         69 LTERDECAYQEMITHLPLCS--IPNPKKVLVVGGGD-GG-VLREIARHSSVEQIDICEID  124 (308)
T ss_pred             ecCccHHHHHHHHHHHHHhh--CCCCCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECC
Confidence            45555566754432222211  11367899999985 22 2344444 468899999853

>PRK06114 short chain dehydrogenase; Provisional

Probab=87.21  E-value=2.1  Score=37.54  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+++.++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r   40 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL   40 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788999998 55899999999999997 5777765

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=87.21  E-value=6.6  Score=34.87  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=25.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|+|+ |.+|+.+++.|...|. ++++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence            5899995 8999999999999985 5777765

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06185 hypothetical protein; Provisional

Probab=87.20  E-value=0.86  Score=43.09  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ....|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            456899999999999999999999985 99999753

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=87.20  E-value=0.74  Score=43.69  Aligned_cols=34  Identities=3%  Similarity=0.117  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ....|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            356899999999999999999999986 8999974

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=87.19  E-value=0.83  Score=37.58  Aligned_cols=105  Identities=16%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             cEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH-HhhhCCCceeeeee
Q 023036           33 HILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS-LKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~-l~~lNp~v~v~~~~  110 (288)
                      +|.|+|+|.+|..+++.+.. .++.-+.+.|.  .+++.+.  +++..+.+  -|+.+.+...+. --.+| ...+....
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a--~ll~~Ds~--hg~~~~~v~~~~~~l~i~-g~~i~~~~   74 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLA--HLLKYDSV--HGRFPGEVEVDEDGLIVN-GKKIKVLA   74 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHH--HHhcccCC--CCCCCCcEEEeCCEEEEC-CEEEEEEe
Confidence            79999999999999999874 45655555553  3333332  24443333  166543221100 00111 11122211


Q ss_pred             cC-CCCcchhhhccCcEEEEecCChhhHHHHHHHHH
Q 023036          111 GD-LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR  145 (288)
Q Consensus       111 ~~-~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~  145 (288)
                      .. +.+. +--..+.|+||.|+..+..+.....+..
T Consensus        75 ~~~p~~~-~w~~~gvDiVie~tG~f~~~~~~~~hl~  109 (149)
T smart00846       75 ERDPANL-PWKELGVDIVVECTGKFTTREKASAHLK  109 (149)
T ss_pred             cCChHHC-cccccCCeEEEeccccccchHHHHHHHH
Confidence            11 1111 1011367999999877666665555543

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=87.18  E-value=8.2  Score=33.17  Aligned_cols=102  Identities=15%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      .+|.|||++| +|+++++-...-|-.--.|+-+                              ..++... +  .+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn------------------------------~~K~~~~-~--~~~i~q   47 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRN------------------------------ASKLAAR-Q--GVTILQ   47 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeC------------------------------hHhcccc-c--cceeec
Confidence            4789999664 9999999999888442223211                              0111111 1  223334


Q ss_pred             cCCCCcch--hhhccCcEEEEecCCh----h-----hHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcC
Q 023036          111 GDLSSLDG--EFYDKFDVVVVSCCSV----T-----TKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ  170 (288)
Q Consensus       111 ~~~~~~~~--~~~~~~dvVi~~~~~~----~-----~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~  170 (288)
                      .++-+...  +.+.++|+||.+..-.    .     ....+.+..+.  .++|=+.  ..|..|+.++|-|
T Consensus        48 ~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~--agv~Rll--VVGGAGSL~id~g  114 (211)
T COG2910          48 KDIFDLTSLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKG--AGVPRLL--VVGGAGSLEIDEG  114 (211)
T ss_pred             ccccChhhhHhhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhh--cCCeeEE--EEcCccceEEcCC
Confidence            44444433  7788999999985322    1     12235555554  4555331  3567889998888

>PRK12744 short chain dehydrogenase; Provisional

Probab=87.18  E-value=2.6  Score=36.95  Aligned_cols=33  Identities=15%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTL   60 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~l   60 (288)
                      .|++++|+|.| .|++|.++++.|+..|...+.+
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            35678999998 5689999999999999874444

>PLN02740 Alcohol dehydrogenase-like

Probab=87.17  E-value=4.2  Score=38.26  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|..++..+...|+.++..+|.
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~  231 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI  231 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence            568999999999999999888999877888775

>TIGR01746 Thioester-redct thioester reductase domain

Probab=87.12  E-value=7  Score=35.65  Aligned_cols=30  Identities=10%  Similarity=0.089  Sum_probs=23.8

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEc
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMD   62 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD   62 (288)
                      +|+|.|+ |.+|+.+++.|...|- .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5889996 7899999999999983 3466554

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	288
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-26
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-12
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		8e-11
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		8e-11
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		8e-11
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		8e-11
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		8e-11
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		6e-10
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		3e-05

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 34/255 (13%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124
Query: 123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD              +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182
Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242
Query: 214 LRVLEQFEEAEGRSP 228
           L+VL +F   +GR P
Sbjct: 243 LQVLLKFRTDKGRDP 257

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 12  ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
            LY RQ+ V G +A +++S+S++L+ G KG   E  KN+ LAGV S+TL D +    E  
Sbjct: 7   GLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDL 66
Query: 72  SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXX 131
           S+ + +  D+    G   A+V    L + N  V VSV    +  L  E+   F       
Sbjct: 67  SSQYFLTEDDI---GVPRAKVTVSKLAELNQYVPVSV----VDELSTEYLKNFKCVVVTE 119
Query: 132 XXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
                   IN+   K    +A+   D R   G IF D 
Sbjct: 120 TSLTKQLEINDFTHK--NHIAYIAADSRGLFGSIFCDF 155

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 7   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +
Sbjct: 64  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 5   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +
Sbjct: 62  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 116

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 8   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 64
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +
Sbjct: 65  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 119

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 5   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +
Sbjct: 62  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 116

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 7   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +
Sbjct: 64  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 8   EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
           E + +LY RQ+ V G +A  ++  S++L+ G+KG   E  KN+VLAGV S+T+ D   V 
Sbjct: 4   EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 68  EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDX 126
               S  F +  ++++  G+   +V    L + N  V V+V    L SLD      +F  
Sbjct: 64  LADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNV----LDSLDDVTQLSQFQV 116
Query: 127 XXXXXXXXXXXXL-INEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
                       + INE C   S  + F + + R   G  FVDL
Sbjct: 117 VVATDTVSLEDKVKINEFCH--SSGIRFISSETRGLFGNTFVDL 158

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5   ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           EL++QE   Y+RQI  R +  D Q  L  S +L+ G+ G      + +  AGVG+LTL+D
Sbjct: 3   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107
              V+        L   D  V  G+   E   D+L   NP + ++
Sbjct: 63  FDTVSLSNLQRQTL-HSDATV--GQPKVESARDALTRINPHIAIT 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	2e-76
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	5e-57
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	5e-06
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-42
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	8e-23
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	2e-13
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	9e-12
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	4e-11
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	9e-09
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	2e-08
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	2e-08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-05
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	2e-04

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  235 bits (602), Expect = 2e-76
 Identities = 81/277 (29%), Positives = 136/277 (49%), Gaps = 35/277 (12%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI-RTGSV--GRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYS------- 175
           +FD V ++CCS      +++ C K    + F+T D     G  F +L  H++        
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKN--SIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 176 -----------------KQKIEETIECQLRYPSFEEAISVPWRAL-----PRKASKLYFA 213
                                   ++ ++ +   +EA+ V W +       ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEA 249
           L+VL +F   +GR P   +   D   +L+++ ++ ++
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDS 279

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  190 bits (484), Expect = 5e-57
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 20/247 (8%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             G+ L EQ    YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T+
Sbjct: 5   QLGKLLKEQ---KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTI 61

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL---D 117
           +D   V+ E    NF +        GK  AE   + L++ N  V  S  +    +L   D
Sbjct: 62  IDGNQVSGEDAGNNFFLQRSSI---GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118

Query: 118 GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQ 177
             F+ +F VVV +    +T   + +       ++           G + + ++ H   + 
Sbjct: 119 PSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGLVGYMRIIIKEHPVIES 176

Query: 178 KIEETIECQLR---YPSFEEAISVPW-----RALPRKASKLYFALRVLEQF-EEAEGRSP 228
             +  +E       +P   E           +        +    + L Q+  E  GR P
Sbjct: 177 HPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIP 236

Query: 229 GEISIAD 235
                 +
Sbjct: 237 KTYKEKE 243

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 138 KLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAIS 197
             +     KL + +        +   ++     N  + +     ++  +    +  +   
Sbjct: 352 AAVGNHVAKLLQSIGQAPESISEKELKLLCS--NSAFLRVVRCRSLAEEYGLDTINKDEI 409

Query: 198 VPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCE 248
           +     P     LY  LR +++F + +GR PG  +      + KLK  L  
Sbjct: 410 ISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTG 460

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  153 bits (388), Expect = 3e-42
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 7   TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66
            E + +LY RQ+ V G +A  ++  S++L+ G+KG   E  KN+VLAGV S+T+ D   V
Sbjct: 3   GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPV 62

Query: 67  TEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDV 126
                S  F +  ++++  G+   +V    L + N  V V+V        D     +F V
Sbjct: 63  QLADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNVLDSL---DDVTQLSQFQV 116

Query: 127 VVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH 172
           VV +   S+  K  INE C      + F + + R   G  FVDL + 
Sbjct: 117 VVATDTVSLEDKVKINEFCHSSG--IRFISSETRGLFGNTFVDLGDE 161

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 97.2 bits (241), Expect = 8e-23
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 24/198 (12%)

Query: 5   ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLT 59
           + T+   + YD QI V+G D Q++++ S + + G      E  KN  L G+     G + 
Sbjct: 399 KTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIV 458

Query: 60  LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-------VEKGD 112
           + D+  + +   +  FL  P ++V  GK  +EV  +++   NP ++         V    
Sbjct: 459 VTDNDSIEKSNLNRQFLFRP-KDV--GKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPET 515

Query: 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH 172
               +  F++  D V  +  +V  +  ++ +C    K           + G   V +   
Sbjct: 516 EEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKP--LLESGTLGTKGNTQVIIPRL 573

Query: 173 KYSKQKIEETIECQLRYP 190
                   E+       P
Sbjct: 574 T-------ESYSSSRDPP 584

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 4   EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           ++  E+                Q  L    +LV G  G   E  KN+ L+G   + ++D 
Sbjct: 13  KKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 72

Query: 64  RVVTEEAWSAN----FLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGE 119
             +      +N    FL  P +++  G+  AEV  + L D  P   V      +   +  
Sbjct: 73  DTIDV----SNLNRQFLFRP-KDI--GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT 125

Query: 120 FYDKFDVVVVSCCSVTTKKLINEKCRKLSKR 150
           FY +F ++V    S+  ++ IN     L   
Sbjct: 126 FYRQFHIIVCGLDSIIARRWINGMLISLLNY 156

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 64.4 bits (156), Expect = 9e-12
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 18  IRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI 77
            R    +    ++   +LV G  G   E  KN+VL G   + L+D   +     +  FL 
Sbjct: 4   SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF 63

Query: 78  PPDENVYGGKTIAEVCCDSLKDFNPMVRVS--VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135
              ++V  G++ A+V  +S+  F P   +    +       + EF+ +F +V+ +  +  
Sbjct: 64  QK-KHV--GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRA 120

Query: 136 TKKLINEKCRKLSK 149
            +  +N  C     
Sbjct: 121 ARNHVNRMCLAADV 134

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 1   MDGEELTEQETALYDRQI------RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIV 51
           + GE     E   Y R               Q +L  + +++ G  G    V+     + 
Sbjct: 82  IPGEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVI---LA 138

Query: 52  LAGVGSLTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108
            +G+G + L+D+  +       N    ++  +++V  GK   EV    L   N  + VS 
Sbjct: 139 TSGIGEIILIDNDQIEN----TNLTRQVLFSEDDV--GKNKTEVIKRELLKRNSEISVSE 192

Query: 109 EKGDLSS-LDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSK 149
              +++   D     + D+ VV            +N+ C + ++
Sbjct: 193 IALNINDYTDLHKVPEADIWVV-SADHPFNLINWVNKYCVRANQ 235

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 54.0 bits (131), Expect = 9e-09
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 26/158 (16%)

Query: 5   ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIVLAGVGSLT 59
           EL++QE   Y+RQI  R +  D Q  L  S +L+ G+ G     +++   +  AGVG+LT
Sbjct: 3   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQY---LASAGVGNLT 59

Query: 60  LMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLS 114
           L+D   V+     +N     +  D  V  G+   E   D+L   NP + ++      D +
Sbjct: 60  LLDFDTVSL----SNLQRQTLHSDATV--GQPKVESARDALTRINPHIAITPVNALLDDA 113

Query: 115 SLDGEF--YDKFDVVVVSCC-SVTTKKLINEKCRKLSK 149
            L      +D    +V+ C  +V  +  +N  C     
Sbjct: 114 ELAALIAEHD----LVLDCTDNVAVRNQLNAGCFAAKV 147

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 6   LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           + +++   Y RQI +     D Q++L  S +L+ G+ G        +  AGVG+L L DD
Sbjct: 1   MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60

Query: 64  RVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDG 118
             V      +N    ++   E++   +  ++V    L   NP ++++   ++    +L  
Sbjct: 61  DDVHL----SNLQRQILFTTEDI--DRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD 114

Query: 119 EF--YDKFDVVVVSCC-SVTTKKLINEKCRKLSK 149
                D    VV+ C  ++ T++ IN  C  L+ 
Sbjct: 115 AVARAD----VVLDCTDNMATRQEINAACVALNT 144

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
                        Q  L    +LV G  G   E  KN+ L+G   + ++D   +     +
Sbjct: 393 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN 452

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
             FL  P +++  G+  AEV  + L D  P   V      +   +  FY +F ++V  C 
Sbjct: 453 RQFLFRP-KDI--GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV--CG 507

Query: 133 --SVTTKKLINEKCRKLSK 149
             S+  ++ IN     L  
Sbjct: 508 LDSIIARRWINGMLISLLN 526

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 32/172 (18%)

Query: 1   MDGEELTEQETA--LYDRQI---RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIVL 52
           M         ++  +    +   R+       ++    + + G+ G     AE    +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEM---LTR 57

Query: 53  AGVGSLTLMDDRVVTEEAWSANF--LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110
            G+G L L D   V      AN   L         G +  +    +L++ NP V   V  
Sbjct: 58  CGIGKLLLFDYDKVEL----ANMNRLFFQPHQA--GLSKVQAAEHTLRNINPDVLFEVHN 111

Query: 111 GDLSSLDGEFYDKFDV------------VVVSCC-SVTTKKLINEKCRKLSK 149
            ++++++   +    +            +V+SC  +   +  IN  C +L +
Sbjct: 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQ 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 41/342 (11%), Positives = 92/342 (26%), Gaps = 136/342 (39%)

Query: 4   EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGT-----VAEFCKNIVLAGVGSL 58
           +   +   AL   ++R             ++L+ G+ G+       + C +  +      
Sbjct: 135 QPYLKLRQALL--ELR----------PAKNVLIDGVLGSGKTWVALDVCLSYKV-----Q 177

Query: 59  TLMDDRVVTEEAW-------SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111
             MD ++     W       S   ++   + +   +        S    N  +R+   + 
Sbjct: 178 CKMDFKI----FWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 112 DLSSL-----------------DGEFYDKFDVVVVSCCS-VTTK---------------- 137
           +L  L                 + + ++ F+   +SC   +TT+                
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 138 -------------------KLINEKCRKLSKRVAFYTVDCRDS------CGEIFVDLQNH 172
                              K ++ + + L + V         +        E   D    
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLAT 343

Query: 173 -----KYSKQKIEETIECQL----------RYPS---FEEAISVP-------WRALPRKA 207
                  +  K+   IE  L           +     F  +  +P       W  + +  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-- 401

Query: 208 SKLYFALRVLEQFEE----AEGRSPGEISIADLPAVLKLKKE 245
                 + V+ +  +     +      ISI  +   LK+K E
Sbjct: 402 ---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 25/171 (14%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 1   MDGEELTEQETAL---YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGS 57
           +D  ++ +Q   L     +   +   +    +  + +L+ G         + ++  GV  
Sbjct: 295 LDPLKIADQSVDLNLKLMKWRILPDLN-LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRK 353

Query: 58  LTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS 114
           +T +D+  V+     +N     +   E+   GK  AE+   SLK   P++  +  K  + 
Sbjct: 354 ITFVDNGTVSY----SNPVRQALYNFEDC--GKPKAELAAASLKRIFPLMDATGVKLSIP 407

Query: 115 SLDGEFYD----------------KFDVVVVSCCSVTTKKLINEKCRKLSK 149
            +  +  +                + D++ +   S  ++ L +      +K
Sbjct: 408 MIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENK 458

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 1   MDGEELTEQETAL---YDRQIRVWGADAQRRLSKSHILVCGMKGT----VAEFCKNIVLA 53
            D  ++ +Q   L     +   +   +    +  + +L+ G  GT    V+     ++  
Sbjct: 2   SDPLKIADQSVDLNLKLMKWRILPDLN-LDIIKNTKVLLLGA-GTLGCYVSR---ALIAW 56

Query: 54  GVGSLTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110
           GV  +T +D+  V+     +N     +   E+   GK  AE+   SLK   P++  +  K
Sbjct: 57  GVRKITFVDNGTVSY----SNPVRQALYNFEDC--GKPKAELAAASLKRIFPLMDATGVK 110

Query: 111 GDLSSLDGEFYDKFDV---------------VVVSCC-SVTTKKLINEKCRKLSK 149
             +  +  +  ++                  ++     S  ++ L +      +K
Sbjct: 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENK 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.97
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.97
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.97
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.93
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.89
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.65
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.54
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.54
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.49
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.45
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.39
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.36
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.28
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.27
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.25
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.22
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.18
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.18
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.1
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.04
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.04
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.02
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.0
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.98
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.88
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.87
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.86
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.85
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.84
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.72
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.65
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.63
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.59
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.59
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.53
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.51
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.5
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.49
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.48
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.47
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.44
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.44
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.42
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.42
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.41
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.4
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.4
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.4
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.39
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.39
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.38
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.37
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.34
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.32
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.32
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.31
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.31
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.29
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.29
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.29
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.28
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.27
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.27
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.25
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.24
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.24
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.23
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.23
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.22
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.22
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.21
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.2
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.2
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.18
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.17
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.15
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.13
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.12
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.12
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.11
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.11
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.1
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.09
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.08
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.08
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.06
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.05
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.05
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.04
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.04
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.01
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.98
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.95
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.94
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.93
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.93
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.92
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.92
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.9
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.88
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.88
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.87
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.86
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.86
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.84
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.83
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.83
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.82
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.78
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.77
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.76
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.76
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.75
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.75
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.74
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.74
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.72
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.7
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.68
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.66
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.65
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.54
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.54
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.54
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.53
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.53
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.53
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.53
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.49
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.48
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.48
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.46
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.44
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.37
1lnq_A	336	MTHK channels, potassium channel related protein;	95.36
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.35
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.33
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.31
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.28
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.27
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.26
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.23
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.21
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.21
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.2
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.19
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.18
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.17
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.17
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.14
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.11
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.09
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.08
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.06
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.03
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.03
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.01
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.01
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.96
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.95
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.93
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.93
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.92
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.92
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.88
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.88
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.86
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.81
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.79
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.76
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.73
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.73
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.69
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.68
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.66
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.64
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.62
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.61
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.59
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.54
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.47
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.46
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.43
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.43
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.41
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.4
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.38
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.38
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.37
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.37
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.37
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.36
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	94.35
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.33
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.33
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.32
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.3
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.3
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	94.28
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	94.27
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.25
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.21
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.19
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	94.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.17
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.14
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	94.13
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	94.12
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.11
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.1
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.1
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.09
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.07
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.04
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.02
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.02
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.01
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.01
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.99
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	93.99
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.96
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.91
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.9
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.89
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.81
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.8
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.77
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	93.77
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.76
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.76
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.74
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.72
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.72
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.71
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.71
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.7
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.69
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.67
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.67
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.66
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.66
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.66
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.65
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.6
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.6
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	93.58
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.57
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	93.57
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.55
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.51
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.51
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.47
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	93.44
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.43
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	93.41
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.41
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	93.39
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.39
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.37
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.35
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.33
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	93.33
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.3
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.28
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.27
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	93.26
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	93.25
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	93.19
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	93.13
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.13
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	93.12
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.12
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	93.11
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	93.11
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.08
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.07
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.07
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.07
1spx_A	278	Short-chain reductase family member (5L265); paral	93.05
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	93.04
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	93.01
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.0
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	93.0
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.99
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.97
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	92.97
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	92.97
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.95
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.93
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.92
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.91
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	92.9
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.87
4hb9_A	412	Similarities with probable monooxygenase; flavin,	92.84
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.84
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.8
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	92.78
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.78
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.77
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.76
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	92.75
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.71
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.66
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.64
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	92.63
4f6c_A	427	AUSA reductase domain protein; thioester reductase	92.61
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.6
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.6
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.57
1xq6_A	253	Unknown protein; structural genomics, protein stru	92.57
1xkq_A	280	Short-chain reductase family member (5D234); parra	92.53
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	92.5
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	92.48
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.47
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.42
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.4
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.4
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	92.37
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	92.36
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.36
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.36
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.35
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	92.34
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	92.33
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	92.33
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.3
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.3
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.29
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	92.29
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.26
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	92.25
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.24
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.21
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.2
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	92.2
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.14
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.12
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	92.11
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.11
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.11
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.1
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	92.08
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	92.07
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.06
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.01
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	92.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.93
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	91.93
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.93
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.92
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	91.92
2cul_A	232	Glucose-inhibited division protein A-related PROT	91.91
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	91.91
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.86
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	91.84
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.83
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.79
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.79
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	91.77
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.76
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.74
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.74
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.72
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.7
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	91.67
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.66
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	91.66
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	91.64
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.64
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	91.62
1xhl_A	297	Short-chain dehydrogenase/reductase family member	91.62
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	91.58
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	91.55
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	91.55
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	91.55
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.54
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.53
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	91.53
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.52
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	91.51
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	91.51
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	91.49
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	91.49
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	91.47
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.46
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	91.45
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.44
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	91.44
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	91.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.43
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	91.43
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.42
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.4
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	91.4
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	91.39
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.37
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.33
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	91.32
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	91.29
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	91.29
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	91.26
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	91.22
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.21
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	91.21
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	91.2
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	91.2
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	91.19
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	91.18
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	91.16
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	91.16
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.16
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.15
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.13
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	91.09
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	91.09
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.08
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	91.05
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	91.03
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	91.02
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.96
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	90.96
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.95
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	90.95
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	90.89
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	90.88
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.88
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.87
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.86
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.86
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.85
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	90.85
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.83
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	90.82
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	90.82
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	90.82
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	90.82
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	90.8
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.8
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	90.79
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	90.78
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.77
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.76
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	90.76
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	90.75
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.73
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.72
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	90.63
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.6
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.55
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	90.55
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	90.55
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.54
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	90.54
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.53
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	90.52
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	90.44
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	90.43
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	90.41
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	90.39
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.38
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.37
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.35
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	90.34
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	90.34
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	90.33
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	90.29
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	90.29
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	90.27
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.22
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	90.2
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.2
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	90.17
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.15
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	90.15
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.14

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=2.1e-58  Score=428.80  Aligned_cols=267  Identities=31%  Similarity=0.547  Sum_probs=241.5

Q ss_pred             CCCCHHHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccc
Q 023036            4 EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENV   83 (288)
Q Consensus         4 ~~l~~~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~   83 (288)
                      .+||++|.+|||||+|+||.++|++|++++|+|+|+||+|++++|||+++|||+|+|+|+|.|+.+|++||||++++|+ 
T Consensus         9 ~~l~~~~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~di-   87 (346)
T 1y8q_A            9 GGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSV-   87 (346)
T ss_dssp             -CCCHHHHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCT-
T ss_pred             ccCCHHHHHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccC-
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036           84 YGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus        84 ~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                        |++||++++++|+++||+++++++...+.+...+++++||+||+|+++.+.+..|+++|++  +++|||.+++.|++|
T Consensus        88 --G~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~G~~G  163 (346)
T 1y8q_A           88 --GRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK--NSIKFFTGDVFGYHG  163 (346)
T ss_dssp             --TSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH--TTCEEEEEEEEBTEE
T ss_pred             --cCCHHHHHHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEeecccEE
Confidence              9999999999999999999999998887666788999999999999999999999999999  999999999999999


Q ss_pred             EEEEEcCCeeeecCCCC------------------------ccceeeecCCChhhhhcCCCc--CC---CCCchhHHHHH
Q 023036          164 EIFVDLQNHKYSKQKIE------------------------ETIECQLRYPSFEEAISVPWR--AL---PRKASKLYFAL  214 (288)
Q Consensus       164 ~v~~d~~~~~~~~~~~~------------------------~~~~~~~~f~~l~~~~~~~~~--~~---~~~~~~~~~~~  214 (288)
                      ++|+|+|+|.++..+++                        ...++++.|++|++++..||.  .+   .++++.+|+++
T Consensus       164 ~v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~  243 (346)
T 1y8q_A          164 YTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLL  243 (346)
T ss_dssp             EEEEECSEEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHH
T ss_pred             EEEEecCCCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhhhcccccHHHHHH
Confidence            99999999766643322                        134678899999999999987  11   36889999999


Q ss_pred             HHHHHHHHHhCCCCC-CCCcchHHHHHHHHHHHHHhcCCCc------------------chhhhhhhHHHHHHHhhcccc
Q 023036          215 RVLEQFEEAEGRSPG-EISIADLPAVLKLKKELCEANVRNF------------------KLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       215 ~aL~~f~~~~~~~P~-~~~~~d~~~~~~~~~~~~~~~~~~~------------------~~~~g~~~~~~~i~~~~~~~~  275 (288)
                      ++|++|+++|+++|. +.+.+|+++++++++++++.++++.                  ..++||++||||||++|++..
T Consensus       244 ~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~pv~AiiGGi~aQEviK~it~k~~  323 (346)
T 1y8q_A          244 QVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDP  323 (346)
T ss_dssp             HHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGGSCGGGGGSSCSBCHHHHHHHHHHHHHHHHHHHHTBSC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHhcCCccHHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999996 4678899999999999998766432                  346999999999999999864

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=4.9e-50  Score=390.45  Aligned_cols=170  Identities=25%  Similarity=0.390  Sum_probs=158.8

Q ss_pred             CCHHH-HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcccc
Q 023036            6 LTEQE-TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (288)
Q Consensus         6 l~~~e-~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~   84 (288)
                      |.+.+ .+|||||+++||.++|++|++++|+|||+||+|++++|||+++|||+|+|+|+|.|+.+||+||||++++|+  
T Consensus         6 ~~~id~~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dv--   83 (531)
T 1tt5_A            6 LGKLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI--   83 (531)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGB--
T ss_pred             cccccHHHHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhc--
Confidence            44444 589999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCCcHHHHHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        85 ~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                       |++||++++++|+++||+|+++++...+.+   ...+++++||+||+|.|+.+.+..++++|++  .++|||.+++.|+
T Consensus        84 -G~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~--~~iplI~~~~~G~  160 (531)
T 1tt5_A           84 -GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGL  160 (531)
T ss_dssp             -TSBHHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHH--TTCCEEEEEEETT
T ss_pred             -CcHHHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEEecCC
Confidence             999999999999999999999998877643   3568899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEEcCCeeeecCCCC
Q 023036          162 CGEIFVDLQNHKYSKQKIE  180 (288)
Q Consensus       162 ~G~v~~d~~~~~~~~~~~~  180 (288)
                      .|++++++++|++++.+++
T Consensus       161 ~G~v~~~~p~~~~~d~~~~  179 (531)
T 1tt5_A          161 VGYMRIIIKEHPVIESHPD  179 (531)
T ss_dssp             EEEEEEECSCEEESCCCCS
T ss_pred             eEEEEEEcCCceeccCCCC
Confidence            9999999999988876543

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-49  Score=408.92  Aligned_cols=259  Identities=27%  Similarity=0.382  Sum_probs=228.3

Q ss_pred             HHHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036            9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (288)
Q Consensus         9 ~e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~   88 (288)
                      .+.+|||||+++||.++|++|++++|+|+|+||+|+++||||+++|||+|+|+|+|.|+.+|++||||++.+|+   |++
T Consensus         5 id~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dv---G~~   81 (1015)
T 3cmm_A            5 IDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDI---GQK   81 (1015)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGT---TSB
T ss_pred             hhhHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhc---ChH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEE
Q 023036           89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus        89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~  167 (288)
                      ||++++++|+++||+|+|+++...++   ++++++||+||+|.+ +.+.+..|+++|++  +++|||.+++.|++|++|+
T Consensus        82 Ka~a~~~~L~~lNP~v~v~~~~~~l~---~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~--~~iplI~~~~~G~~G~v~~  156 (1015)
T 3cmm_A           82 RGDVTRAKLAELNAYVPVNVLDSLDD---VTQLSQFQVVVATDTVSLEDKVKINEFCHS--SGIRFISSETRGLFGNTFV  156 (1015)
T ss_dssp             HHHHHHHHHTTSCTTSCEEECCCCCC---STTGGGCSEEEECTTSCHHHHHHHHHHHHH--HTCEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEecCCCC---HHHHhcCCEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEe
Confidence            99999999999999999999887764   468999999999999 99999999999999  9999999999999999999


Q ss_pred             EcCC-eeeecCCCCc-----------------------------------------------------------------
Q 023036          168 DLQN-HKYSKQKIEE-----------------------------------------------------------------  181 (288)
Q Consensus       168 d~~~-~~~~~~~~~~-----------------------------------------------------------------  181 (288)
                      |+|+ |.+.++++++                                                                 
T Consensus       157 d~~~~~~c~~~~~~~p~~~~i~~i~~p~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I~Dts~  236 (1015)
T 3cmm_A          157 DLGDEFTVLDPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKE  236 (1015)
T ss_dssp             ECCSCEEESBSSCCCCCEEEEEEECTTCEEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETTEEECSCCTT
T ss_pred             cCCCceEEeeCCCCCCccccccCCCCCceeEeeecccccCCCCCeEEEEeeccchhhcCccceeeEEcCCceeEecccch
Confidence            9997 7766543211                                                                 


Q ss_pred             -------------cceeeecCCChhhhhcCCCcCC-----CCCchhHHHHHHHHHHHHHHh-CCCCCCCCcchHHHHHHH
Q 023036          182 -------------TIECQLRYPSFEEAISVPWRAL-----PRKASKLYFALRVLEQFEEAE-GRSPGEISIADLPAVLKL  242 (288)
Q Consensus       182 -------------~~~~~~~f~~l~~~~~~~~~~~-----~~~~~~~~~~~~aL~~f~~~~-~~~P~~~~~~d~~~~~~~  242 (288)
                                   +.+.+++|+++++++..||.-.     .++.+.+|++++||++|+++| |++|.+++.+|++++.++
T Consensus       237 ~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~~  316 (1015)
T 3cmm_A          237 YGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKL  316 (1015)
T ss_dssp             TCCCCBCCEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred             hhhhhcCceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence                         1234568999999887775321     135678999999999999999 999999999999999999


Q ss_pred             HHHHHHhcC--------CCc-----------------chhhhhhhHHHHHHHhhcccc
Q 023036          243 KKELCEANV--------RNF-----------------KLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       243 ~~~~~~~~~--------~~~-----------------~~~~g~~~~~~~i~~~~~~~~  275 (288)
                      ++++....+        ++.                 .+++||++||||||++|++..
T Consensus       317 a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf~  374 (1015)
T 3cmm_A          317 VTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFT  374 (1015)
T ss_dssp             HHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBSC
T ss_pred             HHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhccCCC
Confidence            999886422        222                 455999999999999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=2.8e-37  Score=274.92  Aligned_cols=158  Identities=23%  Similarity=0.338  Sum_probs=150.1

Q ss_pred             CCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccc
Q 023036            6 LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENV   83 (288)
Q Consensus         6 l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~   83 (288)
                      ||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++++.+|+ 
T Consensus         1 l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~di-   79 (251)
T 1zud_1            1 MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDI-   79 (251)
T ss_dssp             CCHHHHHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGT-
T ss_pred             CCHHHHHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhC-
Confidence            688999999999999  99999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCcHHHHHHHHHhhhCCCceeeeeecCCCC-cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036           84 YGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (288)
Q Consensus        84 ~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~  162 (288)
                        |++|+++++++|+++||.++++.+...+++ ...++++++|+||+|+|+.+.+..++++|++  .++|+|.+++.|+.
T Consensus        80 --G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~~p~i~~~~~g~~  155 (251)
T 1zud_1           80 --DRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVA--LNTPLITASAVGFG  155 (251)
T ss_dssp             --TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHH--TTCCEEEEEEEBTE
T ss_pred             --CCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEeccccc
Confidence              999999999999999999999998877754 3467889999999999999999999999999  99999999999999


Q ss_pred             EEEEEE
Q 023036          163 GEIFVD  168 (288)
Q Consensus       163 G~v~~d  168 (288)
                      |++++.
T Consensus       156 G~v~~~  161 (251)
T 1zud_1          156 GQLMVL  161 (251)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999863

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.3e-37  Score=296.14  Aligned_cols=248  Identities=19%  Similarity=0.274  Sum_probs=188.7

Q ss_pred             HHHhhhhhhhhccHHH-------------HH-HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccc
Q 023036           10 ETALYDRQIRVWGADA-------------QR-RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANF   75 (288)
Q Consensus        10 e~~rYdRqirl~G~~~-------------q~-~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f   75 (288)
                      +..||+++-++|+.++             ++ +|++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+|||
T Consensus         5 ~~~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~   84 (434)
T 1tt5_B            5 WEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQF   84 (434)
T ss_dssp             CTTTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCT
T ss_pred             hhhhhccceEEEcCCCcccccccccCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCc
Confidence            3468888888876554             54 569999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc--------
Q 023036           76 LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL--------  147 (288)
Q Consensus        76 ~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~--------  147 (288)
                      +++++|+   |++||++++++|+++||.++|+.+...+.+.+.+++++||+||+|+|+.+++..||+.|+.+        
T Consensus        85 l~~~~di---G~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~  161 (434)
T 1tt5_B           85 LFRPKDI---GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVL  161 (434)
T ss_dssp             TCCGGGT---TSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCB
T ss_pred             CCChhHc---CcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhcccccc
Confidence            9999999   99999999999999999999999998877666789999999999999999999999999872        


Q ss_pred             --CCCceEEEEeeecceEEEEEEcCCe--eeecCCCCccceeee-cCCChhhhhcCCC---cCCCCCchh--HHHHHHHH
Q 023036          148 --SKRVAFYTVDCRDSCGEIFVDLQNH--KYSKQKIEETIECQL-RYPSFEEAISVPW---RALPRKASK--LYFALRVL  217 (288)
Q Consensus       148 --~~~ip~i~~~~~G~~G~v~~d~~~~--~~~~~~~~~~~~~~~-~f~~l~~~~~~~~---~~~~~~~~~--~~~~~~aL  217 (288)
                        ..++|+|++++.|+.|++++.+++.  +|..         .. .+|+-.   ..|+   .+.+ +.|.  +.++... 
T Consensus       162 ~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C---------~~~~~p~~~---~~p~Ct~~~~p-~~~~h~i~~a~~i-  227 (434)
T 1tt5_B          162 DPSSIVPLIDGGTEGFKGNARVILPGMTACIEC---------TLELYPPQV---NFPMCTIASMP-RLPEHCIEYVRML-  227 (434)
T ss_dssp             CGGGCCCEEEEEEETTEEEEEEECTTTSCCGGG---------GGGGSCCCC---CCCHHHHHHCC-CSHHHHHHHHHHT-
T ss_pred             ccccCCcEEEeccccceeEEEEECCCCCCCccc---------ccCCCCCcC---CCcccccccCC-cchhHHHHHHHHH-
Confidence              1389999999999999999887641  1110         00 111100   1111   0111 1222  2222222 


Q ss_pred             HHHHHHhCCC---C-CCCCcchHHHHHHHHHHHHHhcCCC--------------------cchhhhhhhHHHHHHHhhcc
Q 023036          218 EQFEEAEGRS---P-GEISIADLPAVLKLKKELCEANVRN--------------------FKLVFVCIIGCLVIKLQSCC  273 (288)
Q Consensus       218 ~~f~~~~~~~---P-~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~i~~~~~~  273 (288)
                       .|+..+...   + ...+.++.+.+.+.+++.++.+|+.                    ...++|+++|+||||.++++
T Consensus       228 -~~~~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~  306 (434)
T 1tt5_B          228 -QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSA  306 (434)
T ss_dssp             -HHHHSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCC
Confidence             355544321   1 1223456677888888888888764                    12479999999999999998


Q ss_pred             cc
Q 023036          274 TL  275 (288)
Q Consensus       274 ~~  275 (288)
                      .+
T Consensus       307 ~~  308 (434)
T 1tt5_B          307 YI  308 (434)
T ss_dssp             SC
T ss_pred             Cc
Confidence            53

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=1.3e-35  Score=263.83  Aligned_cols=158  Identities=25%  Similarity=0.344  Sum_probs=150.1

Q ss_pred             CCHHHHHhhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccc
Q 023036            6 LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENV   83 (288)
Q Consensus         6 l~~~e~~rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~   83 (288)
                      ||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+|++||++++++|+ 
T Consensus         4 l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~di-   82 (249)
T 1jw9_B            4 LSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATV-   82 (249)
T ss_dssp             CCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGT-
T ss_pred             CCHHHHHHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhc-
Confidence            999999999999999  99999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecce
Q 023036           84 YGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (288)
Q Consensus        84 ~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~  162 (288)
                        |++|+++++++++++||.++++.+...+++. ..++++++|+||+|+++.+++..++++|++  .++|+|.+++.|+.
T Consensus        83 --G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~~  158 (249)
T 1jw9_B           83 --GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFA--AKVPLVSGAAIRME  158 (249)
T ss_dssp             --TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHH--HTCCEEEEEEEBTE
T ss_pred             --CcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEeeeccce
Confidence              9999999999999999999999988777642 356789999999999999999999999999  89999999999999


Q ss_pred             EEEEEE
Q 023036          163 GEIFVD  168 (288)
Q Consensus       163 G~v~~d  168 (288)
                      |++++.
T Consensus       159 g~v~~~  164 (249)
T 1jw9_B          159 GQITVF  164 (249)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998753

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=304.80  Aligned_cols=190  Identities=22%  Similarity=0.438  Sum_probs=163.2

Q ss_pred             CCHHH----HHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEcCCcCCccccccccc
Q 023036            6 LTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFL   76 (288)
Q Consensus         6 l~~~e----~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~   76 (288)
                      +++++    .+||+||+++||.++|++|++++|+|||+||+||++++||+++||     |+|+|+|.|.|+.+||+|||+
T Consensus       396 ~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~l  475 (1015)
T 3cmm_A          396 RNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFL  475 (1015)
T ss_dssp             CSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTT
T ss_pred             CChhhccchhhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEecccccccccc
Confidence            55555    579999999999999999999999999999999999999999999     999999999999999999999


Q ss_pred             CCCCccccCCCcHHHHHHHHHhhhCCCc--eeeeeecCCCCc-----chhhhccCcEEEEecCChhhHHHHHHHHHhcCC
Q 023036           77 IPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSVEKGDLSSL-----DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK  149 (288)
Q Consensus        77 ~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~  149 (288)
                      ++.+||   |++||++++++++++||++  +|+++...+.+.     +.++++++|+||+|.|+.+++..++++|+.  .
T Consensus       476 f~~~dv---G~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~--~  550 (1015)
T 3cmm_A          476 FRPKDV---GKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVF--Y  550 (1015)
T ss_dssp             CCGGGT---TSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHH--H
T ss_pred             CChhhC---CCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHH--c
Confidence            999999   9999999999999999999  999998887642     367899999999999999999999999999  8


Q ss_pred             CceEEEEeeecceEEEEEEcCC--eeeec---CCCCccceeee-cCCChhhhhcCCCc
Q 023036          150 RVAFYTVDCRDSCGEIFVDLQN--HKYSK---QKIEETIECQL-RYPSFEEAISVPWR  201 (288)
Q Consensus       150 ~ip~i~~~~~G~~G~v~~d~~~--~~~~~---~~~~~~~~~~~-~f~~l~~~~~~~~~  201 (288)
                      ++|+|.+++.|+.|++.+..+.  .+|..   ...++.+.|++ +||+..+ +++.|+
T Consensus       551 ~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~-h~i~wa  607 (1015)
T 3cmm_A          551 RKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKID-HTIAWA  607 (1015)
T ss_dssp             TCCEEEEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHH-HHHHHH
T ss_pred             CCcEEEeCCCccccceEEEeCCCCCccCCCCCCCCCCCCcccccCCCCCcH-HHHHHH
Confidence            9999999999999998777663  34432   11122233454 6676555 444443

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=3.2e-34  Score=292.57  Aligned_cols=243  Identities=19%  Similarity=0.263  Sum_probs=186.1

Q ss_pred             hhccHHHHHHH-hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHH
Q 023036           19 RVWGADAQRRL-SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSL   97 (288)
Q Consensus        19 rl~G~~~q~~L-~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l   97 (288)
                      ..+|.++|+++ ++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+   |++||++++++|
T Consensus       398 ~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~v---g~~Ka~~~~~~l  474 (805)
T 2nvu_B          398 FEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKAEVAAEFL  474 (805)
T ss_dssp             CCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGT---TSBHHHHHHHHH
T ss_pred             cCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhc---CChHHHHHHHHH
Confidence            35799999988 99999999999999999999999999999999999999999999999999999   999999999999


Q ss_pred             hhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc----------CCCceEEEEeeecceEEEEE
Q 023036           98 KDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL----------SKRVAFYTVDCRDSCGEIFV  167 (288)
Q Consensus        98 ~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~----------~~~ip~i~~~~~G~~G~v~~  167 (288)
                      +++||.++|+.+...+.+.+.+++++||+||+|.|+.++|..||+.|+.+          ..++|+|.+++.|+.|++++
T Consensus       475 ~~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~  554 (805)
T 2nvu_B          475 NDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARV  554 (805)
T ss_dssp             HHHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEE
T ss_pred             HHHCCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEE
Confidence            99999999999998887767889999999999999999999999999872          13899999999999999999


Q ss_pred             EcCCe-eeecCCCCccceeee-cCCChhhhhcCCCcCCCCCch--hHHHHHHHHHHHHHHhCCC---C-CCCCcchHHHH
Q 023036          168 DLQNH-KYSKQKIEETIECQL-RYPSFEEAISVPWRALPRKAS--KLYFALRVLEQFEEAEGRS---P-GEISIADLPAV  239 (288)
Q Consensus       168 d~~~~-~~~~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~--~~~~~~~aL~~f~~~~~~~---P-~~~~~~d~~~~  239 (288)
                      .+++. .+..        |.. .+|+-...-.+...+.+ +.+  .+.++...+  |+..+...   + ...+.++.+.+
T Consensus       555 ~~p~~~~c~~--------c~~~~~p~~~~~~~c~~~~~~-~~~~~~i~~a~~~~--~~~~~~~~~~~~~d~~~~~~~~~~  623 (805)
T 2nvu_B          555 ILPGMTACIE--------CTLELYPPQVNFPMCTIASMP-RLPEHCIEYVRMLQ--WPKEQPFGEGVPLDGDDPEHIQWI  623 (805)
T ss_dssp             ECTTTSCCTT--------TSGGGSCCCCCCCHHHHHHCC-CSHHHHHHHHHHTH--HHHHCTTSTTCCCCTTCHHHHHHH
T ss_pred             ECCCCCCcee--------ccCCCCCCCCCCCccccCCCC-CCccHHHHHHHHhh--cccccCCCCcccCCCCCHHHHHHH
Confidence            88752 1111        000 11211100000011111 222  233333443  44444221   1 12244567778


Q ss_pred             HHHHHHHHHhcCCC--------------------cchhhhhhhHHHHHHHhhcccc
Q 023036          240 LKLKKELCEANVRN--------------------FKLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       240 ~~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~i~~~~~~~~  275 (288)
                      .+.+++.++.+++.                    ...++|+++|+||||.++++..
T Consensus       624 ~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~  679 (805)
T 2nvu_B          624 FQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI  679 (805)
T ss_dssp             HHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888763                    1247999999999999999854

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=2.1e-34  Score=260.70  Aligned_cols=153  Identities=16%  Similarity=0.280  Sum_probs=116.0

Q ss_pred             Hhhhhhhhh--ccH-HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc
Q 023036           12 ALYDRQIRV--WGA-DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (288)
Q Consensus        12 ~rYdRqirl--~G~-~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~   88 (288)
                      -.|+|||.|  ||. ++|+||++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||| ++++|+   |++
T Consensus        14 ~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~di---G~~   89 (292)
T 3h8v_A           14 LVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQA---GLS   89 (292)
T ss_dssp             ------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCT---TSB
T ss_pred             CCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhc---Cch
Confidence            469999998  998 9999999999999999999999999999999999999999999999999997 478899   999


Q ss_pred             HHHHHHHHHhhhCCCceeeeeecCCCC--cchhhh-----------ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS--LDGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus        89 Ka~~~~~~l~~lNp~v~v~~~~~~~~~--~~~~~~-----------~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                      |+++++++|+++||+++|+.+...+++  ..++++           +++|+||+|+|+.+++..||++|++  .++|||.
T Consensus        90 Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~--~~~Pli~  167 (292)
T 3h8v_A           90 KVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNE--LGQTWME  167 (292)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHH--HTCCEEE
T ss_pred             HHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHH--hCCCEEE
Confidence            999999999999999999999988875  224454           6899999999999999999999999  9999999


Q ss_pred             Eeeec--ceEEEEEEcC
Q 023036          156 VDCRD--SCGEIFVDLQ  170 (288)
Q Consensus       156 ~~~~G--~~G~v~~d~~  170 (288)
                      +++.|  +.|++.+..+
T Consensus       168 ~gv~~~~~~Gqv~~~~p  184 (292)
T 3h8v_A          168 SGVSENAVSGHIQLIIP  184 (292)
T ss_dssp             EEECTTSSEEEEEEECT
T ss_pred             eeeecceeEEEEEEECC
Confidence            99986  8898876554

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=2e-33  Score=276.58  Aligned_cols=150  Identities=19%  Similarity=0.318  Sum_probs=141.3

Q ss_pred             hhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH
Q 023036           17 QIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS   96 (288)
Q Consensus        17 qirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~   96 (288)
                      |+++||.++|++|++++|+|||+||+||++++||+++|||+|+|+|+|.|+.+||+|||+++.+|+   |++||++++++
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dV---Gk~KAeaaa~~   79 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV---GRSKAQVAKES   79 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGT---TSBHHHHHHHH
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHc---ChHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             HhhhCCCceeeeeecCCCC--cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEEEEcCC
Q 023036           97 LKDFNPMVRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN  171 (288)
Q Consensus        97 l~~lNp~v~v~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~~d~~~  171 (288)
                      |+++||+++|+++...+.+  ...+++++||+||+|.|+.+++..++++|+.  +++|+|.+++.|+.|++++.+++
T Consensus        80 L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~--~~iPlI~~g~~G~~G~v~vi~p~  154 (640)
T 1y8q_B           80 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA--ADVPLIESGTAGYLGQVTTIKKG  154 (640)
T ss_dssp             HHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHH--HTCCEEEEEEETTEEEEEEECTT
T ss_pred             HHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecccceEEEECCC
Confidence            9999999999999988754  3468999999999999999999999999999  99999999999999999999874

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=100.00  E-value=2.1e-33  Score=261.33  Aligned_cols=156  Identities=19%  Similarity=0.260  Sum_probs=143.9

Q ss_pred             CCCHHHHHhhhhhhh---hccH--HH-HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCC
Q 023036            5 ELTEQETALYDRQIR---VWGA--DA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIP   78 (288)
Q Consensus         5 ~l~~~e~~rYdRqir---l~G~--~~-q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~   78 (288)
                      ++++++.+||+||+.   +||.  ++ |++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++
T Consensus        86 ~~~~~~~~rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~  165 (353)
T 3h5n_A           86 YNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFS  165 (353)
T ss_dssp             GGCSCTTSTTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCC
T ss_pred             CCCHHHHHHhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCC
Confidence            356788999999976   5774  56 99999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCcc--hhhhccCcEEEEecCChh-hHHHHHHHHHhcCCCceEEE
Q 023036           79 PDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD--GEFYDKFDVVVVSCCSVT-TKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus        79 ~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~--~~~~~~~dvVi~~~~~~~-~~~~i~~~~~~~~~~ip~i~  155 (288)
                      ++|+   |++|+++++++|+++||+++++.+...+++.+  .+ ++++|+||+|+|+.. ++..+|++|++  .++|+|.
T Consensus       166 ~~di---G~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~--~~~p~i~  239 (353)
T 3h5n_A          166 EDDV---GKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCVR--ANQPYIN  239 (353)
T ss_dssp             GGGT---TSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHH--TTCCEEE
T ss_pred             hHHC---CChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHHH--hCCCEEE
Confidence            9999   99999999999999999999999998886543  34 899999999999998 99999999999  9999999


Q ss_pred             EeeecceEEEE
Q 023036          156 VDCRDSCGEIF  166 (288)
Q Consensus       156 ~~~~G~~G~v~  166 (288)
                      ++..|..|++-
T Consensus       240 ~~~~g~~g~~g  250 (353)
T 3h5n_A          240 AGYVNDIAVFG  250 (353)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEeCCEEEEE
Confidence            99999888764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.97  E-value=2.6e-31  Score=259.07  Aligned_cols=158  Identities=14%  Similarity=0.114  Sum_probs=144.7

Q ss_pred             CCHHHHHhhhhhhhh-------ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCC
Q 023036            6 LTEQETALYDRQIRV-------WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIP   78 (288)
Q Consensus         6 l~~~e~~rYdRqirl-------~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~   78 (288)
                      +++.+.++|+||+++       |+..+|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++
T Consensus       295 l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~  374 (598)
T 3vh1_A          295 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN  374 (598)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCC
T ss_pred             cCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccc
Confidence            678899999999997       5567789999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCC----------------CcchhhhccCcEEEEecCChhhHHHHHH
Q 023036           79 PDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS----------------SLDGEFYDKFDVVVVSCCSVTTKKLINE  142 (288)
Q Consensus        79 ~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~~~~~~~~~i~~  142 (288)
                      .+|+   |++||++++++|+++||.++++.+...+.                +...++++++|+||+|+|+.++|..+++
T Consensus       375 ~~Dv---G~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~  451 (598)
T 3vh1_A          375 FEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSL  451 (598)
T ss_dssp             STTC---SSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHH
T ss_pred             hhhc---CcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence            9999   99999999999999999999999886641                1225678999999999999999999999


Q ss_pred             HHHhcCCCceEEEEeeecceEEEEEEc
Q 023036          143 KCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (288)
Q Consensus       143 ~~~~~~~~ip~i~~~~~G~~G~v~~d~  169 (288)
                      +|+.  .++|+|.+ +.|+.|++.+-.
T Consensus       452 ~c~~--~~~plI~a-a~G~~Gqv~v~~  475 (598)
T 3vh1_A          452 LSNI--ENKTVINA-ALGFDSYLVMRH  475 (598)
T ss_dssp             HHHH--TTCEEEEE-EECSSEEEEEEE
T ss_pred             HHHh--cCCCEEEE-EECCccEEEEEc
Confidence            9999  99999986 799999987653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.97  E-value=9.8e-31  Score=240.54  Aligned_cols=149  Identities=14%  Similarity=0.122  Sum_probs=136.8

Q ss_pred             hhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHH
Q 023036           16 RQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD   95 (288)
Q Consensus        16 Rqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~   95 (288)
                      ...|+|+..++++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+++.+|+   |++|++++++
T Consensus        19 m~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~di---G~~Ka~aaa~   95 (340)
T 3rui_A           19 MKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC---GKPKAELAAA   95 (340)
T ss_dssp             HHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGT---TSBHHHHHHH
T ss_pred             HHHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhc---ChHHHHHHHH
Confidence            4457899888999999999999999999999999999999999999999999999999999999999   9999999999


Q ss_pred             HHhhhCCCceeeeeecCCC----------------CcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036           96 SLKDFNPMVRVSVEKGDLS----------------SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus        96 ~l~~lNp~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                      +|+++||.++++.+..++.                +...++++++|+||+|+|+.+++..++++|+.  +++|+|.++ .
T Consensus        96 ~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~--~~~plI~aa-~  172 (340)
T 3rui_A           96 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNI--ENKTVINAA-L  172 (340)
T ss_dssp             HHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHH--TTCEEEEEE-E
T ss_pred             HHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHH--cCCcEEEee-e
Confidence            9999999999999876541                12356889999999999999999999999999  999999875 9


Q ss_pred             cceEEEEEEcC
Q 023036          160 DSCGEIFVDLQ  170 (288)
Q Consensus       160 G~~G~v~~d~~  170 (288)
                      |+.|++.+..|
T Consensus       173 G~~G~l~v~~g  183 (340)
T 3rui_A          173 GFDSYLVMRHG  183 (340)
T ss_dssp             CSSEEEEEECC
T ss_pred             cceEEEEEeec
Confidence            99999988765

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.97  E-value=3e-30  Score=251.73  Aligned_cols=160  Identities=15%  Similarity=0.129  Sum_probs=145.0

Q ss_pred             CCHHHHHhhhhhh-------hhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCC
Q 023036            6 LTEQETALYDRQI-------RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIP   78 (288)
Q Consensus         6 l~~~e~~rYdRqi-------rl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~   78 (288)
                      |++.+.+++++++       |+|+..++++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++
T Consensus       294 ~dp~~la~~~~~Lnlklm~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~  373 (615)
T 4gsl_A          294 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN  373 (615)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCC
T ss_pred             CCHHHHHhhhhhhhhHHHHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCC
Confidence            4566777777777       779999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCcHHHHHHHHHhhhCCCceeeeeecCCC----------------CcchhhhccCcEEEEecCChhhHHHHHH
Q 023036           79 PDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS----------------SLDGEFYDKFDVVVVSCCSVTTKKLINE  142 (288)
Q Consensus        79 ~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~~~~~~~~~i~~  142 (288)
                      .+|+   |++||++++++|+++||.++++.+...+.                +...++++++|+||+|+|+.+++..+++
T Consensus       374 ~~dI---G~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~  450 (615)
T 4gsl_A          374 FEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSL  450 (615)
T ss_dssp             GGGT---TSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHH
T ss_pred             hhhc---ChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHH
Confidence            9999   99999999999999999999999876441                1235678999999999999999999999


Q ss_pred             HHHhcCCCceEEEEeeecceEEEEEEcCC
Q 023036          143 KCRKLSKRVAFYTVDCRDSCGEIFVDLQN  171 (288)
Q Consensus       143 ~~~~~~~~ip~i~~~~~G~~G~v~~d~~~  171 (288)
                      +|+.  .++|+|.++ .|+.|++.+..|.
T Consensus       451 ~c~~--~~~PlI~aa-lG~~Gql~v~~g~  476 (615)
T 4gsl_A          451 LSNI--ENKTVINAA-LGFDSYLVMRHGN  476 (615)
T ss_dssp             HHHH--TTCEEEEEE-ECSSEEEEEECCC
T ss_pred             HHHH--cCCeEEEEE-ccceeEEEEeecc
Confidence            9999  999999975 9999999877653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.93  E-value=1.9e-05  Score=70.64  Aligned_cols=80  Identities=16%  Similarity=0.095  Sum_probs=64.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++++|+|+|+||+|..++..|+..|+++++|++.                      ...|++.+++.+...+|.+.+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R----------------------~~~~a~~la~~~~~~~~~~~i~  181 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVV  181 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECS----------------------SHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEEC----------------------CHHHHHHHHHHHHhhcCCceEE
Confidence            367889999999999999999999999999999875                      3348888899998888777666


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...  +++ ..+.+.++|+||.|+.
T Consensus       182 ~~~--~~~-l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          182 GVD--ARG-IEDVIAAADGVVNATP  203 (283)
T ss_dssp             EEC--STT-HHHHHHHSSEEEECSS
T ss_pred             EcC--HHH-HHHHHhcCCEEEECCC
Confidence            543  222 2456778999999874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.89  E-value=5.7e-05  Score=57.11  Aligned_cols=92  Identities=14%  Similarity=0.112  Sum_probs=62.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+                      ..|.+.+.      .+.+  ....
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~----------------------~~~~~~~~------~~~~--~~~~   54 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD----------------------LAALAVLN------RMGV--ATKQ   54 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC----------------------HHHHHHHH------TTTC--EEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHH------hCCC--cEEE
Confidence            4689999999999999999999997778888852                      11222222      2222  2333


Q ss_pred             cCCCCc--chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          111 GDLSSL--DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       111 ~~~~~~--~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                      .++.+.  ..+.++++|+||.+.. ......+.+.|.+  .+++++.
T Consensus        55 ~d~~~~~~~~~~~~~~d~vi~~~~-~~~~~~~~~~~~~--~g~~~~~   98 (118)
T 3ic5_A           55 VDAKDEAGLAKALGGFDAVISAAP-FFLTPIIAKAAKA--AGAHYFD   98 (118)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECSC-GGGHHHHHHHHHH--TTCEEEC
T ss_pred             ecCCCHHHHHHHHcCCCEEEECCC-chhhHHHHHHHHH--hCCCEEE
Confidence            333321  2455788999999884 4445677888888  8888774

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.65  E-value=0.0001  Score=67.00  Aligned_cols=82  Identities=12%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++++|+|+||+|..++..|+..|+.+|+|++.+              .+     -..|++.+++.+.+..+ +.+..
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~--------------~~-----~~~~a~~la~~~~~~~~-~~~~~  211 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK--------------DD-----FYANAEKTVEKINSKTD-CKAQL  211 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS--------------ST-----THHHHHHHHHHHHHHSS-CEEEE
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC--------------Cc-----hHHHHHHHHHHhhhhcC-CceEE
Confidence            568899999999999999999999999999998751              01     14588888888877654 34444


Q ss_pred             eecCCCCc--chhhhccCcEEEEecC
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~  132 (288)
                      ..  +++.  ..+.+.++|+||.|+.
T Consensus       212 ~~--~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          212 FD--IEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             EE--TTCHHHHHHHHHTCSEEEECSS
T ss_pred             ec--cchHHHHHhhhcCCCEEEECcc
Confidence            32  2221  2345678999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.54  E-value=0.00021  Score=61.69  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=66.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++.+|+|||.|.+|...++.|..+|. .++++|++.-             ..+           . .+.+. .  .++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~-------------~~l-----------~-~l~~~-~--~i~   78 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVS-------------AEI-----------N-EWEAK-G--QLR   78 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCC-------------HHH-----------H-HHHHT-T--SCE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCC-------------HHH-----------H-HHHHc-C--CcE
Confidence            5789999999999999999999999996 5999987310             001           1 11121 1  234


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      .....+   .++.+.++|+||.++++.+....+.+.|+   .++|+-.++.
T Consensus        79 ~i~~~~---~~~dL~~adLVIaAT~d~~~N~~I~~~ak---~gi~VNvvD~  123 (223)
T 3dfz_A           79 VKRKKV---GEEDLLNVFFIVVATNDQAVNKFVKQHIK---NDQLVNMASS  123 (223)
T ss_dssp             EECSCC---CGGGSSSCSEEEECCCCTHHHHHHHHHSC---TTCEEEC---
T ss_pred             EEECCC---CHhHhCCCCEEEECCCCHHHHHHHHHHHh---CCCEEEEeCC
Confidence            444333   35667899999999999888888888873   5787655443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.54  E-value=0.00062  Score=53.51  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=61.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.+                      ..+++.    +.+.  .  +..
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~----------------------~~~~~~----~~~~--~--~~~   52 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKS----------------------KEKIEL----LEDE--G--FDA   52 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC----------------------HHHHHH----HHHT--T--CEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECC----------------------HHHHHH----HHHC--C--CcE
Confidence            345789999999999999999999997 48898862                      112222    2221  1  223


Q ss_pred             eecCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          109 EKGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       109 ~~~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ...+..+.   ....+.++|+||.+..+.+....+...+++  .+.+.+.+
T Consensus        53 ~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~--~~~~~iia  101 (141)
T 3llv_A           53 VIADPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRS--VSDVYAIV  101 (141)
T ss_dssp             EECCTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHH--HCCCCEEE
T ss_pred             EECCCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHH--hCCceEEE
Confidence            33333321   111246799999999888877778888888  43444444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.49  E-value=0.00081  Score=53.77  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +.+.+|+|+|+|.+|..+++.|...|.. ++++|.+.                     ..+++.+.+.+   ...  +..
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~---------------------~~~~~~~~~~~---~~~--~~~   53 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQRGQN-VTVISNLP---------------------EDDIKQLEQRL---GDN--ADV   53 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCC---------------------HHHHHHHHHHH---CTT--CEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC---------------------hHHHHHHHHhh---cCC--CeE
Confidence            3567899999999999999999999964 89988621                     11222222211   112  333


Q ss_pred             eecCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          109 EKGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       109 ~~~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ...+..+.   ....++++|+||.++.+.+....+...+++
T Consensus        54 i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~   94 (153)
T 1id1_A           54 IPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKD   94 (153)
T ss_dssp             EESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHH
Confidence            44444331   123377899999999888888888888887

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.45  E-value=0.00024  Score=64.38  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++++|+|+||.|..++..|+..|+++|+|++.+              .+     ...|++.+++.+.+..+ ..+..
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt--------------~~-----~~~~a~~la~~~~~~~~-~~v~~  205 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK--------------DD-----FFEKAVAFAKRVNENTD-CVVTV  205 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS--------------ST-----HHHHHHHHHHHHHHHSS-CEEEE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC--------------Cc-----hHHHHHHHHHHhhhccC-cceEE
Confidence            567899999999999999999999999999998751              00     13578888888876543 23333


Q ss_pred             eecCCCCc--chhhhccCcEEEEecC
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~  132 (288)
                      ..  +.+.  ..+.+.++|+||.|+.
T Consensus       206 ~~--~~~l~~~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          206 TD--LADQHAFTEALASADILTNGTK  229 (312)
T ss_dssp             EE--TTCHHHHHHHHHHCSEEEECSS
T ss_pred             ec--hHhhhhhHhhccCceEEEECCc
Confidence            32  2221  1345778999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.42  E-value=0.00024  Score=55.42  Aligned_cols=95  Identities=11%  Similarity=0.097  Sum_probs=56.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ++...+|+|+|+|.+|..+++.|...|. +++++|.+.-..                          +.+.+..  .  .
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~--------------------------~~~~~~~--~--~   51 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKV--------------------------NAYASYA--T--H   51 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHH--------------------------HTTTTTC--S--E
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH--------------------------HHHHHhC--C--E
Confidence            4567889999999999999999999996 588888632110                          1111111  1  1


Q ss_pred             eeecCCCCcc--hh-hhccCcEEEEecCCh-hhHHHHHHHHHhcCCCceEEE
Q 023036          108 VEKGDLSSLD--GE-FYDKFDVVVVSCCSV-TTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       108 ~~~~~~~~~~--~~-~~~~~dvVi~~~~~~-~~~~~i~~~~~~~~~~ip~i~  155 (288)
                      ....+..+..  .+ .+.++|+||.+..+. .....+...+++  .+.+.+.
T Consensus        52 ~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~ii  101 (144)
T 2hmt_A           52 AVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKE--LDIPNIW  101 (144)
T ss_dssp             EEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHH--TTCSEEE
T ss_pred             EEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHH--cCCCeEE
Confidence            1112222110  11 256899999998764 555667778877  5444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.39  E-value=0.0019  Score=49.96  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+.                      .+++.+    .+.. .  +.....
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~----------------------~~~~~~----~~~~-~--~~~~~~   54 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK----------------------DICKKA----SAEI-D--ALVING   54 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH----------------------HHHHHH----HHHC-S--SEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH----------------------HHHHHH----HHhc-C--cEEEEc
Confidence            589999999999999999999995 588888521                      122222    2111 1  122222


Q ss_pred             CCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          112 DLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       112 ~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      +..+.   ....+.++|+||.++.+......+...++.
T Consensus        55 d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~   92 (140)
T 1lss_A           55 DCTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKS   92 (140)
T ss_dssp             CTTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHH
Confidence            22211   112356899999998877666667777777

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.28  E-value=0.0032  Score=49.60  Aligned_cols=91  Identities=11%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.+                      ..+++    .+++.  .  +....
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~----------------------~~~~~----~~~~~--g--~~~i~   55 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETS----------------------RTRVD----ELRER--G--VRAVL   55 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESC----------------------HHHHH----HHHHT--T--CEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHH----HHHHc--C--CCEEE
Confidence            4689999999999999999999997 49999862                      11222    22221  2  23333


Q ss_pred             cCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036          111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (288)
Q Consensus       111 ~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip  152 (288)
                      .+..+.   ...-++++|+||.+..+......+...+++...++.
T Consensus        56 gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~  100 (140)
T 3fwz_A           56 GNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIE  100 (140)
T ss_dssp             SCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSE
T ss_pred             CCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCe
Confidence            333221   122356899999998877666656666666333443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.27  E-value=0.0037  Score=49.96  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      -+++.+.+|+|+|+|.+|..+++.|...|. .++++|.+.-....+..                         +.  .+ 
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~-------------------------~~--g~-   64 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS-------------------------EF--SG-   64 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT-------------------------TC--CS-
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh-------------------------cC--CC-
Confidence            356778899999999999999999999997 79999874322111110                         00  00 


Q ss_pred             eeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          106 VSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       106 v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                       .....+..+   .....+.++|+||.++.+......+...++.
T Consensus        65 -~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           65 -FTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             -EEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             -cEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHH
Confidence             111111111   0011256799999999887777777777765

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.25  E-value=0.00056  Score=60.74  Aligned_cols=74  Identities=22%  Similarity=0.358  Sum_probs=54.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++++|+|+||.|..++..|...|+.+++|++.                      ...|++.+++.+..  .  .+..
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R----------------------~~~~a~~la~~~~~--~--~~~~  171 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANR----------------------DMAKALALRNELDH--S--RLRI  171 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHCC--T--TEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhcc--C--CeeE
Confidence            46789999999999999999999999999999864                      23477777777665  1  2333


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..  +++.. .  .++|+||.|+..
T Consensus       172 ~~--~~~l~-~--~~~DivInaTp~  191 (272)
T 3pwz_A          172 SR--YEALE-G--QSFDIVVNATSA  191 (272)
T ss_dssp             EC--SGGGT-T--CCCSEEEECSSG
T ss_pred             ee--HHHhc-c--cCCCEEEECCCC
Confidence            21  11211 1  689999998743

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.22  E-value=0.0021  Score=52.74  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.+.                      .|++.    +++..  +  .
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~----------------------~~~~~----~~~~g--~--~   85 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE----------------------EAAQQ----HRSEG--R--N   85 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH----------------------HHHHH----HHHTT--C--C
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH----------------------HHHHH----HHHCC--C--C
Confidence            4577999999999999999999999 97 488888621                      12222    22222  1  2


Q ss_pred             eeecCCCCc--chhh--hccCcEEEEecCChhhHHHHHHHHHh
Q 023036          108 VEKGDLSSL--DGEF--YDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       108 ~~~~~~~~~--~~~~--~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ....+..+.  ..+.  ++++|+||.++.+......+-..++.
T Consensus        86 ~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~  128 (183)
T 3c85_A           86 VISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQR  128 (183)
T ss_dssp             EEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHH
T ss_pred             EEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHH
Confidence            222222221  1222  56899999998877766666667777

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.18  E-value=0.00078  Score=59.85  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcc-cccccccCCCCccccCCCcHHHHHHHHHhh-hCCC--
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE-AWSANFLIPPDENVYGGKTIAEVCCDSLKD-FNPM--  103 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~-nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~-lNp~--  103 (288)
                      .|++.+|+|||.|.+|...++.|...|. +++++|++.-..- .--.. +....|    |  ++.  ....++ +|+.  
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~l~~~~~~-l~~~~~----~--~~~--~~~~~~~~~~~~~   79 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGK-FIQNKD----Q--PDY--REDAKRFINPNWD   79 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCG-GGC-------------------CEEECTTCC
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcchhHHHHH-HHhccc----c--ccc--cchhhcccccccc
Confidence            3678999999999999999999999995 5999998542110 00000 110000    0  000  001111 1111  


Q ss_pred             ---cee-eeeecCCCCcchhhhc------cCcEEEEecCChhhHHHHHHHHHhcCC---CceEEEEeee
Q 023036          104 ---VRV-SVEKGDLSSLDGEFYD------KFDVVVVSCCSVTTKKLINEKCRKLSK---RVAFYTVDCR  159 (288)
Q Consensus       104 ---v~v-~~~~~~~~~~~~~~~~------~~dvVi~~~~~~~~~~~i~~~~~~~~~---~ip~i~~~~~  159 (288)
                         -.+ ..+...+   .++.+.      ++|+||.++++.+....+.+.|++  .   ++|+-.++.-
T Consensus        80 ~~~g~i~~~i~~~~---~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~--~f~~~i~VNvvd~p  143 (274)
T 1kyq_A           80 PTKNEIYEYIRSDF---KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKE--RFGKQQLVNVADKP  143 (274)
T ss_dssp             TTSCCCSEEECSSC---CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHH--HHCTTSEEEETTCG
T ss_pred             cccCCeeEEEcCCC---CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHH--hcCCCcEEEECCCc
Confidence               123 3443333   234455      899999999998888999999999  7   8887554433

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.18  E-value=0.0016  Score=60.89  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhC-C-CeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAG-V-GSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~G-v-g~i~lvD~   63 (288)
                      ++|+|+|+|++|..+++.|+..| + ..+++.|.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r   35 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASR   35 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEEC
Confidence            47999999999999999999988 3 68998876

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.11  E-value=0.0019  Score=61.46  Aligned_cols=98  Identities=14%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++.+|+|+|.|.+|...++.|...|. +++++|++.-.             ++            +.+.+   .-.++
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~-------------~~------------~~l~~---~~~i~   59 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP-------------QF------------TVWAN---EGMLT   59 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH-------------HH------------HHHHT---TTSCE
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH-------------HH------------HHHHh---cCCEE
Confidence            3678999999999999999999999995 69999973110             01            11111   11344


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                      .....+   .++.+.++|+||.++++.+....+.+.|++  .++|+-.++--
T Consensus        60 ~~~~~~---~~~~l~~~~lVi~at~~~~~n~~i~~~a~~--~~i~vn~~d~~  106 (457)
T 1pjq_A           60 LVEGPF---DETLLDSCWLAIAATDDDTVNQRVSDAAES--RRIFCNVVDAP  106 (457)
T ss_dssp             EEESSC---CGGGGTTCSEEEECCSCHHHHHHHHHHHHH--TTCEEEETTCT
T ss_pred             EEECCC---CccccCCccEEEEcCCCHHHHHHHHHHHHH--cCCEEEECCCc
Confidence            444433   345677899999999998888899999999  99996444433

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.10  E-value=0.0054  Score=52.08  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=61.0

Q ss_pred             HHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC
Q 023036           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP  102 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp  102 (288)
                      ..+.+|++.+|+|.|+ |++|.++++.|+..|. ++++++.+.                      .+.+.+    .+.  
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~----------------------~~~~~~----~~~--   64 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE----------------------EQGPEL----RER--   64 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG----------------------GGHHHH----HHT--
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh----------------------HHHHHH----HhC--
Confidence            3456789999999997 8999999999999996 578776421                      111111    111  


Q ss_pred             Ccee-eeeecCCCCcchhhhccCcEEEEecCC-------------hhhHHHHHHHHHhcCCCc-eEEEEeeec
Q 023036          103 MVRV-SVEKGDLSSLDGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRV-AFYTVDCRD  160 (288)
Q Consensus       103 ~v~v-~~~~~~~~~~~~~~~~~~dvVi~~~~~-------------~~~~~~i~~~~~~~~~~i-p~i~~~~~G  160 (288)
                        .+ ..+..++.+...+.+.+.|+||.+...             ......+-+.|++  .++ .+|..+++|
T Consensus        65 --~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~iv~~SS~~  133 (236)
T 3e8x_A           65 --GASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEK--RGIKRFIMVSSVG  133 (236)
T ss_dssp             --TCSEEEECCTTSCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHH--HTCCEEEEECCTT
T ss_pred             --CCceEEEcccHHHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHH--cCCCEEEEEecCC
Confidence              23 344444443345667889999987542             1223456667766  443 466666654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.04  E-value=0.0013  Score=58.64  Aligned_cols=74  Identities=19%  Similarity=0.300  Sum_probs=54.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +.+++|+|+|+||.|..++..|...|+.+++|++.                      ...|++.+++.+....   .+..
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R----------------------~~~~a~~la~~~~~~~---~~~~  178 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNR----------------------TFAKAEQLAELVAAYG---EVKA  178 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEES----------------------SHHHHHHHHHHHGGGS---CEEE
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEEC----------------------CHHHHHHHHHHhhccC---CeeE
Confidence            46889999999999999999999999999999875                      3347777887776543   2222


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..  +.+    .-.++|+||.|+..
T Consensus       179 ~~--~~~----l~~~aDiIInaTp~  197 (281)
T 3o8q_A          179 QA--FEQ----LKQSYDVIINSTSA  197 (281)
T ss_dssp             EE--GGG----CCSCEEEEEECSCC
T ss_pred             ee--HHH----hcCCCCEEEEcCcC
Confidence            21  111    11689999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.04  E-value=0.0022  Score=57.75  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            34689999999999999999999998689999974

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.02  E-value=0.0028  Score=55.25  Aligned_cols=94  Identities=10%  Similarity=0.092  Sum_probs=58.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +...+|.|||+|.+|..+++.|...|...++++|.                      ...+++.+.+.+   .    +..
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~----------------------~~~~~~~~~~~~---g----~~~   58 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSR----------------------TEESARELAQKV---E----AEY   58 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS----------------------SHHHHHHHHHHT---T----CEE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeC----------------------CHHHHHHHHHHc---C----Cce
Confidence            34568999999999999999999999765778774                      122333333322   1    121


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ..     ...+.++++|+||.|+.+......+.++...++.+..++..
T Consensus        59 ~~-----~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           59 TT-----DLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHT  101 (266)
T ss_dssp             ES-----CGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             eC-----CHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEEC
Confidence            11     12345678999999987665544455444332234445543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.00  E-value=0.00094  Score=59.92  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +..++|+|+|+|++|..++..|...|+.+++++|.                      ...|++.+++.+....+  .  .
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR----------------------~~~ka~~la~~~~~~~~--~--~  192 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANR----------------------TVEKAERLVREGDERRS--A--Y  192 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS----------------------SHHHHHHHHHHSCSSSC--C--E
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHhhhccC--c--e
Confidence            56789999999999999999999999999999875                      23366666655533211  1  1


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..  + +...+.+.++|+||.|+..
T Consensus       193 ~~--~-~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          193 FS--L-AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             EC--H-HHHHHTGGGCSEEEECSCT
T ss_pred             ee--H-HHHHhhhccCCEEEECCCC
Confidence            10  0 1123456789999999754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.98  E-value=0.00073  Score=53.51  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +....+|+|+|+|++|..+++.|...|+. ++++|.                      ...|++.+++.+.     +.+.
T Consensus        18 ~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r----------------------~~~~~~~~a~~~~-----~~~~   69 (144)
T 3oj0_A           18 KNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGR----------------------NIDHVRAFAEKYE-----YEYV   69 (144)
T ss_dssp             HHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEES----------------------CHHHHHHHHHHHT-----CEEE
T ss_pred             hccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC----------------------CHHHHHHHHHHhC-----CceE
Confidence            34489999999999999999999999987 999885                      2234555454443     1221


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCCh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ..     +...+.+.++|+||.|+...
T Consensus        70 ~~-----~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           70 LI-----NDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             EC-----SCHHHHHHTCSEEEECSCCS
T ss_pred             ee-----cCHHHHhcCCCEEEEeCCCC
Confidence            11     12345678899999998654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.004  Score=56.16  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34789999999999999999999995578998863

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.87  E-value=0.0032  Score=57.83  Aligned_cols=91  Identities=13%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ++.||+|+|+|.+|..+++.|+..  ..+++.|-                      ...++       .++.+.+.  ..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~----------------------~~~~~-------~~~~~~~~--~~   61 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDV----------------------NNENL-------EKVKEFAT--PL   61 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEES----------------------CHHHH-------HHHTTTSE--EE
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEc----------------------CHHHH-------HHHhccCC--cE
Confidence            455799999999999999999653  46777653                      11121       22222221  12


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ..+..+.  ..+.++++|+||.|.... .-..+.+.|.+  .++.+++.
T Consensus        62 ~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~--~g~~yvD~  107 (365)
T 3abi_A           62 KVDASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIK--SKVDMVDV  107 (365)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHH--HTCEEEEC
T ss_pred             EEecCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHh--cCcceEee
Confidence            2222221  245678888888876443 33456666766  66666653

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.86  E-value=0.014  Score=52.45  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC--
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--  103 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~--  103 (288)
                      ..+..++|+|.|+ |.+|+.+++.|...|. +++.+|...-.                  ..    .....+..+.+.  
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~----~~~~~~~~~~~~~~   77 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG------------------HQ----YNLDEVKTLVSTEQ   77 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC------------------CH----HHHHHHHHTSCHHH
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC------------------ch----hhhhhhhhcccccc
Confidence            4567899999995 7899999999999994 57777652110                  00    111222222110  


Q ss_pred             -ceeeeeecCCCCc--chhhhccCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecce
Q 023036          104 -VRVSVEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (288)
Q Consensus       104 -v~v~~~~~~~~~~--~~~~~~~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~  162 (288)
                       -.++.+..++.+.  ....++++|+||.+....                 .....+-+.|++  .++ .||..++.+.+
T Consensus        78 ~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~v~~SS~~vy  155 (351)
T 3ruf_A           78 WSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKN--AQVQSFTYAASSSTY  155 (351)
T ss_dssp             HTTEEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--TTCSEEEEEEEGGGG
T ss_pred             CCceEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEecHHhc
Confidence             2455566666543  245677899999876421                 112345677777  665 78888887766


Q ss_pred             E
Q 023036          163 G  163 (288)
Q Consensus       163 G  163 (288)
                      |
T Consensus       156 g  156 (351)
T 3ruf_A          156 G  156 (351)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.85  E-value=0.0034  Score=57.04  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC----C
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----M  103 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp----~  103 (288)
                      +|+..+|.|+|+|.+|+.++..|+..|.+.++++|-                      ...|++..+..|+..++    .
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~   61 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDI----------------------AEGTPQGKGLDIAESSPVDGFD   61 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS----------------------SSSHHHHHHHHHHHHHHHHTCC
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC----------------------CchhHHHHHHHHhchhhhcCCC
Confidence            466789999999999999999999999878999985                      22234433444544432    3


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .++....      +.+.++++|+||.+..
T Consensus        62 ~~v~~t~------d~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           62 AKFTGAN------DYAAIEGADVVIVTAG   84 (324)
T ss_dssp             CCEEEES------SGGGGTTCSEEEECCS
T ss_pred             CEEEEeC------CHHHHCCCCEEEEccC
Confidence            3444322      1356889999999853

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.84  E-value=0.012  Score=49.76  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      +|+|+|+|.+|..+++.|...|.. ++++|.+                      ..+++.+++.   .    .+..+..+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~----------------------~~~~~~l~~~---~----~~~~i~gd   51 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKD----------------------RELCEEFAKK---L----KATIIHGD   51 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC-EEEEESC----------------------HHHHHHHHHH---S----SSEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECC----------------------HHHHHHHHHH---c----CCeEEEcC
Confidence            799999999999999999999974 8898851                      1122222221   1    22334444


Q ss_pred             CCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          113 LSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       113 ~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                      ..+.   ....++++|+||.++.+......+...+++. .+.+.+.+.+.
T Consensus        52 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~-~~~~~iia~~~  100 (218)
T 3l4b_C           52 GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKD-FGVKRVVSLVN  100 (218)
T ss_dssp             TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHT-SCCCEEEECCC
T ss_pred             CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHH-cCCCeEEEEEe
Confidence            3321   2234678999999998887777777777752 23444444443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.72  E-value=0.0049  Score=54.53  Aligned_cols=32  Identities=13%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|+|+||.|..++..|...| .+++|++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            789999999999999999999999 99999865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.65  E-value=0.0033  Score=55.52  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++.++|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r  160 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNR  160 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEEC
Confidence            3678899999999999999999999998 8999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.63  E-value=0.0058  Score=55.42  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=53.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC----CCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMV  104 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN----p~v  104 (288)
                      |+..+|.|+|+|.+|+.++..|+..|+++++++|-+                      ..|++..+..|++..    ..+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~----------------------~~~~~g~a~dL~~~~~~~~~~~   60 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA----------------------QGMPNGKALDLLQTCPIEGVDF   60 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS----------------------SSHHHHHHHHHHTTHHHHTCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC----------------------hHHHHHHHHHHHhhhhhcCCCc
Confidence            456799999999999999999999998789999862                      224444445555432    233


Q ss_pred             eeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ++....      +.+.++++|+||.+..
T Consensus        61 ~v~~t~------d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           61 KVRGTN------DYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CEEEES------CGGGGTTCSEEEECCS
T ss_pred             EEEEcC------CHHHHCCCCEEEEcCC
Confidence            444321      2357889999999853

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.63  E-value=0.012  Score=55.14  Aligned_cols=93  Identities=15%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.+.                      .+++.    +++.    .+.++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~----------------------~~v~~----~~~~----g~~vi~   52 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDP----------------------DHIET----LRKF----GMKVFY   52 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCH----------------------HHHHH----HHHT----TCCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCH----------------------HHHHH----HHhC----CCeEEE
Confidence            46899999999999999999999976 99998621                      12222    2222    123333


Q ss_pred             cCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       111 ~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .+..+.   ...-+.++|+||++.++......+-..+++...++++|
T Consensus        53 GDat~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Ii   99 (413)
T 3l9w_A           53 GDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQII   99 (413)
T ss_dssp             SCTTCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCCCCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEE
Confidence            443321   12236789999999999888888888998844334444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.59  E-value=0.0052  Score=54.25  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            589999999999999999999995 688988753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.59  E-value=0.0074  Score=55.54  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=69.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCcee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v  106 (288)
                      .++..+|.|||+|.+|..++++|+..|. .++++|.+.-....+...-.....+       -    .+.++.. .|++-+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s-------~----~e~~~~a~~~DvVi   86 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGARS-------I----EEFCAKLVKPRVVW   86 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCCSS-------H----HHHHHHSCSSCEEE
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEeCC-------H----HHHHhcCCCCCEEE
Confidence            3567899999999999999999999994 6899987543222222110000111       1    2222222 245444


Q ss_pred             eeeecCC-CCc---chhhhccCcEEEEecC-ChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          107 SVEKGDL-SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       107 ~~~~~~~-~~~---~~~~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ...+... .+.   ....++.-++||+++. .+.....+.+.+.+  .++.|+.+...|.
T Consensus        87 ~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~vdapVsGg  144 (358)
T 4e21_A           87 LMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA--QGITYVDVGTSGG  144 (358)
T ss_dssp             ECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHT--TTCEEEEEEEECG
T ss_pred             EeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHH--CCCEEEeCCCCCC
Confidence            4443321 011   1123445578887764 44566677788877  8899998877653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.56  E-value=0.011  Score=52.34  Aligned_cols=34  Identities=12%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC--CeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD~   63 (288)
                      +..+|.|||+|.+|+.+++.|...|.  ..++++|.
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr   37 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNR   37 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeC
Confidence            45789999999999999999999996  26888875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.53  E-value=0.011  Score=52.21  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -.+|.|||+|.+|+.+|..|+.+|. +++++|.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~   35 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDI   35 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            3689999999999999999999997 6899886

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.51  E-value=0.004  Score=55.08  Aligned_cols=68  Identities=13%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+++|+|+|+||.|..++..|...|+.+|+|++.                      -..|++.+++.+..     .+.  
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nR----------------------t~~ka~~la~~~~~-----~~~--  168 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR----------------------NVKTGQYLAALYGY-----AYI--  168 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS----------------------CHHHHHHHHHHHTC-----EEE--
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----ccc--
Confidence            3578999999999999999999999999999864                      23467777766531     111  


Q ss_pred             ecCCCCcchhhhccCcEEEEecCC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                       ...     . ..++|+||.|+..
T Consensus       169 -~~~-----~-~~~~DivInaTp~  185 (271)
T 1npy_A          169 -NSL-----E-NQQADILVNVTSI  185 (271)
T ss_dssp             -SCC-----T-TCCCSEEEECSST
T ss_pred             -hhh-----h-cccCCEEEECCCC
Confidence             111     1 3579999999753

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.50  E-value=0.024  Score=50.88  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh----hCCCceeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVSV  108 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~----lNp~v~v~~  108 (288)
                      +|.|+|+|.+|+.++..|+..|++++.|+|-+                      ..|++..+..|.+    ++..+++..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~----------------------~~~~~g~~~dl~~~~~~~~~~~~i~~   58 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART----------------------PGKPQGEALDLAHAAAELGVDIRISG   58 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS----------------------TTHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC----------------------hhhHHHHHHHHHHhhhhcCCCeEEEE
Confidence            68999999999999999999999669999952                      1233333344443    344555554


Q ss_pred             eecCCCCcchhhhccCcEEEEec
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      ..    +  .+.+++.|+||.+.
T Consensus        59 t~----d--~~a~~~aD~Vi~~a   75 (308)
T 2d4a_B           59 SN----S--YEDMRGSDIVLVTA   75 (308)
T ss_dssp             ES----C--GGGGTTCSEEEECC
T ss_pred             CC----C--HHHhCCCCEEEEeC
Confidence            32    1  24578999999984

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.49  E-value=0.018  Score=51.69  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|.|||+|.+|+.++..|+..|...++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3589999999999999999999998669999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0037  Score=56.05  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .....+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4445689999999999999999999996 699998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.47  E-value=0.016  Score=52.29  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|||+|.+|+.++..|+..|. .++++|.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r   35 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDI   35 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            4689999999999999999999995 5888875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.44  E-value=0.02  Score=51.13  Aligned_cols=114  Identities=17%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee--
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS--  107 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~--  107 (288)
                      .+.||.+||+|-.|..+|+||+.+|.. ++++|.+.-..+.+...           |-..++    .+.++-...++.  
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~-----------G~~~~~----s~~e~~~~~dvvi~   67 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYE-LVVWNRTASKAEPLTKL-----------GATVVE----NAIDAITPGGIVFS   67 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCE-EEEC-------CTTTTT-----------TCEECS----SGGGGCCTTCEEEE
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHc-----------CCeEeC----CHHHHHhcCCceee
Confidence            346899999999999999999999964 88888644332222111           211111    112221122222  


Q ss_pred             eeecCC------CCcchhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          108 VEKGDL------SSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       108 ~~~~~~------~~~~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ..+.+.      .......++.-++||+++ .++...+++.+.+.+  +++.|+++...|.
T Consensus        68 ~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~--~g~~~ldapVsGg  126 (297)
T 4gbj_A           68 VLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEW--YGAHYVGAPIFAR  126 (297)
T ss_dssp             CCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECC
T ss_pred             eccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHh--cCCceecCCcCCC
Confidence            222110      000122345556777765 567888899999999  9999999998874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.44  E-value=0.012  Score=53.03  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      .+|.|||+|.+|..+++.|...|.. .++++|.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr   66 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   66 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            6899999999999999999999974 6888875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.42  E-value=0.033  Score=48.32  Aligned_cols=99  Identities=8%  Similarity=0.010  Sum_probs=63.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|+|.|+|.+|+.+++.|...|. +++.++.+                      ..+.+.    +..  +  .++...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~----------------------~~~~~~----~~~--~--~~~~~~   53 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRN----------------------PDQMEA----IRA--S--GAEPLL   53 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESC----------------------GGGHHH----HHH--T--TEEEEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcC----------------------hhhhhh----Hhh--C--CCeEEE
Confidence            4689999999999999999999995 46666531                      111111    111  1  345555


Q ss_pred             cCCCCcchhhhccCcEEEEecCC----hhhHHHHHHHHHhcC-CCceEEEEeeecceE
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCS----VTTKKLINEKCRKLS-KRVAFYTVDCRDSCG  163 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~----~~~~~~i~~~~~~~~-~~ip~i~~~~~G~~G  163 (288)
                      .++.+..   +.++|+||.+...    ......+-+.|++.. ....||..++.+.+|
T Consensus        54 ~D~~d~~---~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           54 WPGEEPS---LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SSSSCCC---CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             ecccccc---cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            5555533   7889999987642    223345666676521 225688888888776

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.022  Score=50.40  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCC--eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh
Q 023036           23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD   99 (288)
Q Consensus        23 ~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg--~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~   99 (288)
                      ......|.+++|+|.|+ ||+|.++++.|+..|.+  ++.++|.                      ...+.+.+++.+.+
T Consensus        25 ~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r----------------------~~~~~~~~~~~l~~   82 (287)
T 3rku_A           25 RKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAAR----------------------RLEKLEELKKTIDQ   82 (287)
T ss_dssp             HHHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEES----------------------CHHHHHHHHHHHHH
T ss_pred             ccchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEEC----------------------CHHHHHHHHHHHHh
Confidence            34456789999999995 68999999999999975  6777664                      22356667777877


Q ss_pred             hCCCceeeeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          100 FNPMVRVSVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       100 lNp~v~v~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      .+|..++.....++.+..  ..       .+...|+||.+.
T Consensus        83 ~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  123 (287)
T 3rku_A           83 EFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA  123 (287)
T ss_dssp             HCTTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred             hCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            777777777777775431  22       234689988764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.41  E-value=0.0048  Score=54.63  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +++++|+|.| +||+|..+++.|+..|.. ++++|.                      ...|++.+++.+.+. +.+.+ 
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R----------------------~~~~~~~l~~~~~~~-~~~~~-  171 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGR----------------------KLDKAQAAADSVNKR-FKVNV-  171 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES----------------------SHHHHHHHHHHHHHH-HTCCC-
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC----------------------CHHHHHHHHHHHHhc-CCcEE-
Confidence            5778999999 999999999999999986 888874                      223556666666543 12222 


Q ss_pred             eeecCCCCc--chhhhccCcEEEEecC
Q 023036          108 VEKGDLSSL--DGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~--~~~~~~~~dvVi~~~~  132 (288)
                       ...++.+.  ..+.++.+|+||.+..
T Consensus       172 -~~~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          172 -TAAETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             -EEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             -EEecCCCHHHHHHHHHhCCEEEECCC
Confidence             22223221  2455677899998874

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.40  E-value=0.012  Score=52.99  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      +...+|.|||+|.+|+.++++|...|+   ..++++|.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r   57 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP   57 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            344589999999999999999999995   56888775

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.40  E-value=0.0071  Score=52.22  Aligned_cols=32  Identities=9%  Similarity=0.069  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~   63 (288)
                      .+|.|||+|.+|..++++|...|.   ..++++|.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r   37 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL   37 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence            589999999999999999999996   36888775

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.40  E-value=0.028  Score=50.26  Aligned_cols=77  Identities=13%  Similarity=0.162  Sum_probs=50.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV  108 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~~  108 (288)
                      .+|.|||+|.+|+.++..|+..|+ ..++++|.+                      ..|++.++..+...++..  .+..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~   59 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN----------------------EAKVKADQIDFQDAMANLEAHGNI   59 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS----------------------HHHHHHHHHHHHHHGGGSSSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC----------------------HHHHHHHHHHHHhhhhhcCCCeEE
Confidence            479999999999999999999997 679998862                      224444444433222111  1222


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~  135 (288)
                      ...   +  .+.++++|+||.+.....
T Consensus        60 ~~~---d--~~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A           60 VIN---D--WAALADADVVISTLGNIK   81 (309)
T ss_dssp             EES---C--GGGGTTCSEEEECCSCGG
T ss_pred             EeC---C--HHHhCCCCEEEEecCCcc
Confidence            121   1  245789999999986543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.39  E-value=0.021  Score=49.82  Aligned_cols=97  Identities=14%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +..+|+|.|+|.+|+.+++.|...|. +++.++...-.              .                  .+  .++.+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~------------------~~--~~~~~   46 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQP--------------M------------------PA--GVQTL   46 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSC--------------C------------------CT--TCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCccc--------------c------------------cc--CCceE
Confidence            45789999999999999999999996 47777642110              0                  11  12233


Q ss_pred             ecCCCCc--chhhhcc-CcEEEEecC------------ChhhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          110 KGDLSSL--DGEFYDK-FDVVVVSCC------------SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~-~dvVi~~~~------------~~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      ..++.+.  ..+.+++ +|+||.+..            +......+-+.|++  .++ .||..++.+.+|
T Consensus        47 ~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~--~~~~~~v~~SS~~vyg  114 (286)
T 3gpi_A           47 IADVTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEG--APLQHVFFVSSTGVYG  114 (286)
T ss_dssp             ECCTTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTT--SCCCEEEEEEEGGGCC
T ss_pred             EccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhh--CCCCEEEEEcccEEEc
Confidence            3333321  1334455 888887642            22334566677766  553 688888887766

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.39  E-value=0.017  Score=50.52  Aligned_cols=30  Identities=3%  Similarity=0.073  Sum_probs=26.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.++++|.. |. +++++|.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeC
Confidence            379999999999999999999 96 4888875

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.38  E-value=0.012  Score=52.66  Aligned_cols=110  Identities=14%  Similarity=0.107  Sum_probs=64.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +...+|+|.|+ |.+|+.+++.|...|.. .++.+|.......                        .+.+.++.+.-.+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~------------------------~~~l~~~~~~~~~   77 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN------------------------LNNVKSIQDHPNY   77 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC------------------------GGGGTTTTTCTTE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc------------------------hhhhhhhccCCCe
Confidence            45678999997 88999999999999943 3555554221100                        0112222222245


Q ss_pred             eeeecCCCCc--chhhhcc--CcEEEEecCCh-----------------hhHHHHHHHHHhcCCCce-EEEEeeecceEE
Q 023036          107 SVEKGDLSSL--DGEFYDK--FDVVVVSCCSV-----------------TTKKLINEKCRKLSKRVA-FYTVDCRDSCGE  164 (288)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~--~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~ip-~i~~~~~G~~G~  164 (288)
                      +.+..++.+.  ....+++  +|+||.+....                 .....+-+.|++  .+++ ||..++.+.+|.
T Consensus        78 ~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~v~~SS~~vy~~  155 (346)
T 4egb_A           78 YFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK--YPHIKLVQVSTDEVYGS  155 (346)
T ss_dssp             EEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHH--STTSEEEEEEEGGGGCC
T ss_pred             EEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCchHHhCC
Confidence            5555555542  2344555  88888764311                 112456678877  6655 888888777663

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.37  E-value=0.0077  Score=53.17  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999995 589988754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.36  E-value=0.013  Score=49.46  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=28.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++...+|.|||+|.+|+.+++.|+..|. +++++|.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~   50 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGS   50 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            45777899999999999999999999995 5888875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.34  E-value=0.0083  Score=54.03  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +....+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            4455699999999999999999999996 58888864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.32  E-value=0.011  Score=52.07  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=50.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +.+++|+|+|+|++|..+++.|+..| .+++++|.                      ...|++.+++.+....   .+..
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R----------------------~~~~~~~la~~~~~~~---~~~~  170 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNR----------------------TVSRAEELAKLFAHTG---SIQA  170 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS----------------------SHHHHHHHHHHTGGGS---SEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEEC----------------------CHHHHHHHHHHhhccC---CeeE
Confidence            46789999999999999999999999 78999875                      2235666666654321   1222


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      .  ++.+. .+  .++|+||.++..
T Consensus       171 ~--~~~~~-~~--~~~DivVn~t~~  190 (271)
T 1nyt_A          171 L--SMDEL-EG--HEFDLIINATSS  190 (271)
T ss_dssp             C--CSGGG-TT--CCCSEEEECCSC
T ss_pred             e--cHHHh-cc--CCCCEEEECCCC
Confidence            1  11111 11  589999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.32  E-value=0.0092  Score=50.89  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.+.                      .++    +.+.   +.  +.+.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~----------------------~~~----~~~~---~~--~~~i   54 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN----------------------VRK----KVLR---SG--ANFV   54 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG----------------------GHH----HHHH---TT--CEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH----------------------HHH----HHHh---cC--CeEE
Confidence            35689999999999999999999987  88888621                      122    2222   22  3344


Q ss_pred             ecCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          110 KGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       110 ~~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ..+..+.   ...-++++|.||.++.+.+....+...+++
T Consensus        55 ~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~   94 (234)
T 2aef_A           55 HGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRK   94 (234)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHH
Confidence            4444331   122367899999999887777788888888

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.31  E-value=0.013  Score=52.59  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|+|+|+|++|+.++..|+.+|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            689999999999999999999995 799998754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.31  E-value=0.017  Score=55.22  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+.+++|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~   47 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS   47 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            356888999999999999999999999997 58898864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.29  E-value=0.0071  Score=54.98  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=54.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-eee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVS  107 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-~v~  107 (288)
                      ...+|.|+|+|.+|+.++..|+..|+ +++.|+|-                      ...|++..+..|+...|.. .+.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~----------------------~~~k~~g~a~DL~~~~~~~~~~~   65 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI----------------------FKDKTKGDAIDLEDALPFTSPKK   65 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHTTGGGSCCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC----------------------ChHHHHHHHhhHhhhhhhcCCcE
Confidence            45789999999999999999999998 58999985                      2335666666666655421 222


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ....     +.+.++++|+||.+..
T Consensus        66 i~~~-----~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A           66 IYSA-----EYSDAKDADLVVITAG   85 (326)
T ss_dssp             EEEC-----CGGGGTTCSEEEECCC
T ss_pred             EEEC-----cHHHhcCCCEEEECCC
Confidence            2222     2456889999999854

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.29  E-value=0.028  Score=48.92  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++ +|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r  147 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNR  147 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            567 99999999999999999999998 7999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.29  E-value=0.0077  Score=53.67  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999996 68888864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.28  E-value=0.014  Score=52.58  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=64.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |...+|+|.|+ |.+|..+++.|...| .++++++.+.-             .     ...|+..+ +.+..  +  .++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~-------------~-----~~~~~~~~-~~l~~--~--~v~   63 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGP-------------R-----SPSKAKIF-KALED--K--GAI   63 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSC-------------C-----CHHHHHHH-HHHHH--T--TCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCC-------------C-----ChhHHHHH-HHHHh--C--CcE
Confidence            45679999997 889999999999999 55777765210             0     11122221 12222  2  355


Q ss_pred             eeecCCCCc--chhhhc--cCcEEEEecC--ChhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          108 VEKGDLSSL--DGEFYD--KFDVVVVSCC--SVTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       108 ~~~~~~~~~--~~~~~~--~~dvVi~~~~--~~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      .+..++.+.  ....++  ++|+||.+..  +......+-+.|++  .+ ++.+....+|
T Consensus        64 ~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~--~g~v~~~v~S~~g  121 (346)
T 3i6i_A           64 IVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKA--VGTIKRFLPSEFG  121 (346)
T ss_dssp             EEECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEEeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHH--cCCceEEeecccC
Confidence            566666542  245677  8999999865  45556677788887  55 5555434333

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.27  E-value=0.031  Score=49.91  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ..+|+|+|+|++|+.++..|+..|. +.++++|.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~   40 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   40 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4689999999999999999999995 47999886

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.27  E-value=0.018  Score=54.88  Aligned_cols=98  Identities=9%  Similarity=0.124  Sum_probs=62.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhC-C--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAG-V--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~G-v--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      -+.+|+|||+|++|+.++..|++.+ +  ..|+++|.+..                   ++..    .+.+     .+++
T Consensus        12 ~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~-------------------~~~~----~~~~-----g~~~   63 (480)
T 2ph5_A           12 FKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT-------------------KVDV----AQQY-----GVSF   63 (480)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC-------------------SCCH----HHHH-----TCEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh-------------------hhhH----Hhhc-----CCce
Confidence            3578999999999999999999864 5  48999986322                   2211    1111     1222


Q ss_pred             eeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          107 SVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       107 ~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      ....-+-++   ....++++.|+||.+.... ....+-+.|.+  .++-+++...
T Consensus        64 ~~~~Vdadnv~~~l~aLl~~~DvVIN~s~~~-~~l~Im~acle--aGv~YlDTa~  115 (480)
T 2ph5_A           64 KLQQITPQNYLEVIGSTLEENDFLIDVSIGI-SSLALIILCNQ--KGALYINAAT  115 (480)
T ss_dssp             EECCCCTTTHHHHTGGGCCTTCEEEECCSSS-CHHHHHHHHHH--HTCEEEESSC
T ss_pred             eEEeccchhHHHHHHHHhcCCCEEEECCccc-cCHHHHHHHHH--cCCCEEECCC
Confidence            222211111   1234566679999866443 45678899999  8888887654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.25  E-value=0.028  Score=46.02  Aligned_cols=33  Identities=21%  Similarity=0.143  Sum_probs=28.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.+|+|.|+ |++|.++++.|...| .++++++.+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~   36 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRD   36 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeC
Confidence            468999997 899999999999999 468888753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.24  E-value=0.019  Score=50.28  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+                      ..+.+.+    .+..  +..... 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~----------------------~~~~~~~----~~~g--~~~~~~-   52 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN----------------------PESISKA----VDLG--IIDEGT-   52 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC----------------------HHHHHHH----HHTT--SCSEEE-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC----------------------HHHHHHH----HHCC--Cccccc-
Confidence            4799999999999999999999963 58877752                      1122221    2221  110111 


Q ss_pred             cCCCCcchhhhc-cCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          111 GDLSSLDGEFYD-KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       111 ~~~~~~~~~~~~-~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      .    ...+.++ ++|+||.|.-+......+.++...++.+..++.+
T Consensus        53 ~----~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~   95 (281)
T 2g5c_A           53 T----SIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQ   95 (281)
T ss_dssp             S----CGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             C----CHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence            1    1234567 8999999986655555555554333344445543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.24  E-value=0.0099  Score=52.90  Aligned_cols=36  Identities=8%  Similarity=0.094  Sum_probs=33.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|+|+|+||.|..++..|...|+++|+|++.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567899999999999999999999999999999753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.23  E-value=0.016  Score=52.64  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=53.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--eee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVS  107 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v~  107 (288)
                      ..+|.|+|+|.+|+.++..|+..|. +.++++|-                      ...|++..+..|+...|..  .+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~----------------------~~~k~~g~a~DL~~~~~~~~~~v~   62 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDV----------------------NKEKAMGDVMDLNHGKAFAPQPVK   62 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGSSSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEec----------------------chHHHHHHHHHHHhccccccCCeE
Confidence            4689999999999999999999997 58999985                      2335666555566554432  222


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ....     +.+.++++|+||.+..
T Consensus        63 i~~~-----~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           63 TSYG-----TYEDCKDADIVCICAG   82 (326)
T ss_dssp             EEEE-----CGGGGTTCSEEEECCS
T ss_pred             EEeC-----cHHHhCCCCEEEEecc
Confidence            2222     2356789999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.23  E-value=0.02  Score=49.42  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+...+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~   51 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD   51 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            347889999999999999999999999996 68888863

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.22  E-value=0.016  Score=51.91  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      ++|.+||+|..|..+|+||+.+|. .++++|.+.-..+.+...           |-..++..++..+.  .++-+.....
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~~-----------Ga~~a~s~~e~~~~--~dvv~~~l~~   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA-----------GASAARSARDAVQG--ADVVISMLPA   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT-----------TCEECSSHHHHHTT--CSEEEECCSC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHc-----------CCEEcCCHHHHHhc--CCceeecCCc
Confidence            479999999999999999999996 488888643222222111           22222222222221  2232332221


Q ss_pred             CC--CCc------chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          112 DL--SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       112 ~~--~~~------~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ..  .+.      ....++.-++||+++ .+++..+++.+.+.+  +++-|+++.+.|.
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~--~G~~~lDaPVsGg  126 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESC
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEecCCCCC
Confidence            10  000      011223346777765 568888899999998  9999999988874

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.21  E-value=0.04  Score=49.58  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC----Cce
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MVR  105 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp----~v~  105 (288)
                      ..+|.|||+|.+|+.++..|+..|. +++.++|-+                      ..|++..+..+....+    .++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~----------------------~~~~~~~~~dl~~~~~~~~~~~~   63 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN----------------------ESKAIGDAMDFNHGKVFAPKPVD   63 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS----------------------HHHHHHHHHHHHHHTTSSSSCCE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC----------------------cchHHHHHhhHHHHhhhcCCCeE
Confidence            3689999999999999999999985 679999852                      1134443444444333    333


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEec
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      +.  ..     ..+.++++|+||.+.
T Consensus        64 i~--~~-----~~~al~~aDvViia~   82 (316)
T 1ldn_A           64 IW--HG-----DYDDCRDADLVVICA   82 (316)
T ss_dssp             EE--EC-----CGGGTTTCSEEEECC
T ss_pred             EE--cC-----cHHHhCCCCEEEEcC
Confidence            33  21     234578999999984

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.20  E-value=0.01  Score=53.54  Aligned_cols=37  Identities=11%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ++++..+|.|||+|.+|..++..|+..|. ..+.++|-
T Consensus         2 ~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            34566799999999999999999999986 67999985

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.20  E-value=0.012  Score=54.87  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+.+|+|+|+|++|..+++.|...|+++++++|.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r  199 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR  199 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            57899999999999999999999999989999875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.18  E-value=0.048  Score=49.26  Aligned_cols=78  Identities=13%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +++++|+|.| .|++|+.+++.|+.. |..+++++|.                      ...+.+.+.+.+.  .  ..+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r----------------------~~~~~~~~~~~~~--~--~~v   72 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR----------------------DELKQSEMAMEFN--D--PRM   72 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES----------------------CHHHHHHHHHHHC--C--TTE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC----------------------ChhhHHHHHHHhc--C--CCE
Confidence            5678999999 588999999999999 9878888775                      2223333333332  1  245


Q ss_pred             eeeecCCCCc--chhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSL--DGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~dvVi~~~~  132 (288)
                      ..+..++.+.  ....++++|+||.+..
T Consensus        73 ~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           73 RFFIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence            5666666553  2456778999998753

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.17  E-value=0.05  Score=48.19  Aligned_cols=111  Identities=11%  Similarity=-0.036  Sum_probs=64.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +++++|+|.|+ |.+|+.+++.|...|. +++++|.+                      ..+.+.+.+.+.+..+ -.++
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~----------------------~~~~~~~~~~~~~~~~-~~~~   64 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS----------------------ASKLANLQKRWDAKYP-GRFE   64 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS----------------------HHHHHHHHHHHHHHST-TTEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC----------------------cccHHHHHHHhhccCC-CceE
Confidence            45678999996 8999999999999995 57766541                      1123333344433322 1344


Q ss_pred             ee-ecCCCCc--chhhhccCcEEEEecCC------hh--------hHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          108 VE-KGDLSSL--DGEFYDKFDVVVVSCCS------VT--------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       108 ~~-~~~~~~~--~~~~~~~~dvVi~~~~~------~~--------~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      .+ ..++.+.  ..+.++++|+||.+...      ..        ....+-+.|++......+|.+++.+.+|
T Consensus        65 ~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~  137 (342)
T 1y1p_A           65 TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSAL  137 (342)
T ss_dssp             EEECSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTC
T ss_pred             EEEecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhc
Confidence            44 3444332  24556789999987531      11        1234455665311234677777765543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.15  E-value=0.004  Score=56.43  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|||+|++|+.++..|+.+|. .++++|.
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            35689999999999999999999996 5888875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.13  E-value=0.012  Score=52.02  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|.|||+|.+|..++++|...|. +++++|.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999996 58888864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.12  E-value=0.025  Score=47.15  Aligned_cols=30  Identities=7%  Similarity=0.108  Sum_probs=26.9

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|+| +|.+|+.+++.|...|. +++++|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r   32 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            699999 99999999999999996 5888775

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.12  E-value=0.016  Score=50.57  Aligned_cols=30  Identities=20%  Similarity=0.128  Sum_probs=27.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|+.+++.|...|. +++++|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   31 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSR   31 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            69999999999999999999997 6888775

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.11  E-value=0.018  Score=52.22  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|.|+|+|.+|+.+|..|+..|...++++|-
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di   46 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDI   46 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence            4468999999999999999999999855999986

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.11  E-value=0.0031  Score=57.13  Aligned_cols=51  Identities=12%  Similarity=0.101  Sum_probs=39.1

Q ss_pred             hhhhhhh--hccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           13 LYDRQIR--VWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        13 rYdRqir--l~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+++.+  -|.......|.+++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       119 ~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~  171 (315)
T 3pp8_A          119 DYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRS  171 (315)
T ss_dssp             HHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred             HHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            3555544  2643334568899999999999999999999999975 7788753

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.10  E-value=0.016  Score=51.45  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+++++|+|+|+||.|..++..|...|++++++++.+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            36789999999999999999999999999999998754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.09  E-value=0.027  Score=50.54  Aligned_cols=31  Identities=13%  Similarity=0.191  Sum_probs=26.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM   61 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lv   61 (288)
                      ...+|+|+|+|++|+.++..|+.+|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            46789999999999999999999995 57776

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.08  E-value=0.03  Score=49.22  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      .+|.|||+ |.+|+.+++.|...|. +++++|.+                      ..+++.+.    +.  .+.+    
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~----------------------~~~~~~~~----~~--g~~~----   58 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIA----------------------PEGRDRLQ----GM--GIPL----   58 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCS----------------------HHHHHHHH----HT--TCCC----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC----------------------HHHHHHHH----hc--CCCc----
Confidence            48999999 9999999999999996 68887741                      11222222    21  1211    


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                         . ...+.++++|+||.|.-+......+.++...++.+..+++
T Consensus        59 ---~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           59 ---T-DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             ---C-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ---C-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEE
Confidence               1 1234567899999998665554455554433223455554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.08  E-value=0.014  Score=51.30  Aligned_cols=73  Identities=11%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ++.++|+|+|+|++|..++..|+..| .+++++|.                      ...|++.+++.+....   .+..
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R----------------------~~~~a~~l~~~~~~~~---~~~~  170 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANR----------------------TFSKTKELAERFQPYG---NIQA  170 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEES----------------------SHHHHHHHHHHHGGGS---CEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC----------------------CHHHHHHHHHHccccC---CeEE
Confidence            46789999999999999999999999 88999875                      3346677776665421   1222


Q ss_pred             eecCCCCcchhhh-ccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFY-DKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~-~~~dvVi~~~~~  133 (288)
                      ..  +.    +.- .++|+||.++..
T Consensus       171 ~~--~~----~~~~~~~DivIn~t~~  190 (272)
T 1p77_A          171 VS--MD----SIPLQTYDLVINATSA  190 (272)
T ss_dssp             EE--GG----GCCCSCCSEEEECCCC
T ss_pred             ee--HH----HhccCCCCEEEECCCC
Confidence            21  11    111 379999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.06  E-value=0.015  Score=52.00  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|+|+|+|++|+.++..|+.+|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            589999999999999999999995 589988743

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.05  E-value=0.0049  Score=55.99  Aligned_cols=49  Identities=12%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             hhhhhh--ccHHH-HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           15 DRQIRV--WGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        15 dRqirl--~G~~~-q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+.+-  |.... ...|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       118 ~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          118 LNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             HHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             HHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            555443  64332 456899999999999999999999999997 47778863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.05  E-value=0.039  Score=50.10  Aligned_cols=94  Identities=14%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      ..|+..+|.|||+|.+|..++++|...|+ +++++|.+.                      .++.   +...+..  +. 
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~----------------------~~~~---~~a~~~G--~~-   62 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG----------------------SATV---AKAEAHG--LK-   62 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT----------------------CHHH---HHHHHTT--CE-
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh----------------------HHHH---HHHHHCC--CE-
Confidence            35778899999999999999999999997 477777521                      1111   1112221  21 


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCChhhHHHHH-HHHHhcCCCceEEEE
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLIN-EKCRKLSKRVAFYTV  156 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~-~~~~~~~~~ip~i~~  156 (288)
                       ..      ...+.+++.|+||.|+-+......+. ++...++.+..++++
T Consensus        63 -~~------~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           63 -VA------DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             -EE------CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             -Ec------cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence             11      12456778999999986655544454 443333345555543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.04  E-value=0.044  Score=45.35  Aligned_cols=94  Identities=12%  Similarity=0.021  Sum_probs=58.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|+|.|+ |++|..+++.|+..|. ++++++.+                      ..+.+       ++.+.  ++....
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~----------------------~~~~~-------~~~~~--~~~~~~   49 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRN----------------------AGKIT-------QTHKD--INILQK   49 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC----------------------SHHHH-------HHCSS--SEEEEC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcC----------------------chhhh-------hccCC--CeEEec
Confidence            6999995 8899999999999994 57777642                      11111       11133  344444


Q ss_pred             CCCCcchhhhccCcEEEEecCCh--------hhHHHHHHHHHhcCC-CceEEEEeeec
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSV--------TTKKLINEKCRKLSK-RVAFYTVDCRD  160 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~--------~~~~~i~~~~~~~~~-~ip~i~~~~~G  160 (288)
                      ++.+...+.+.++|+||.+....        .....+-+.|++  . ...+|..++.+
T Consensus        50 D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~--~~~~~~v~~SS~~  105 (221)
T 3ew7_A           50 DIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNG--TVSPRLLVVGGAA  105 (221)
T ss_dssp             CGGGCCHHHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCS--CCSSEEEEECCCC
T ss_pred             cccChhhhhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHh--cCCceEEEEecce
Confidence            54443336778999999876431        223456667766  5 34566665544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.01  Score=56.54  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+..++|+|+|+|++|..+++.|+..|-.+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4567789999999999999999999843479998864

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.024  Score=51.74  Aligned_cols=105  Identities=16%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             hhhhhhhh--ccHH-HH---HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCC
Q 023036           13 LYDRQIRV--WGAD-AQ---RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (288)
Q Consensus        13 rYdRqirl--~G~~-~q---~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G   86 (288)
                      .|+|++|-  |... ..   ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-.             ..   +
T Consensus       147 ~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~---~  209 (340)
T 4dgs_A          147 DGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GV---D  209 (340)
T ss_dssp             HHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TS---C
T ss_pred             HHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------cc---C
Confidence            35555553  7543 11   46889999999999999999999999887 47777752211             11   1


Q ss_pred             CcHHHHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecC-ChhhHHHHH-HHHHhcCCCceEEEEee
Q 023036           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLIN-EKCRKLSKRVAFYTVDC  158 (288)
Q Consensus        87 ~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~i~-~~~~~~~~~ip~i~~~~  158 (288)
                      .                   ..     ....++.+++.|+|+.+.- +.+++..++ +....++.+..+|.++.
T Consensus       210 ~-------------------~~-----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aR  259 (340)
T 4dgs_A          210 W-------------------IA-----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVAR  259 (340)
T ss_dssp             C-------------------EE-----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSC
T ss_pred             c-------------------ee-----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            0                   00     0123567888999998864 444554553 33333445555665443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.00  E-value=0.018  Score=52.04  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++..+|.|+|+|.+|+.++..|+..|.+.++++|.
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~   40 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDI   40 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            34578999999999999999999999988999996

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.98  E-value=0.034  Score=49.70  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=26.8

Q ss_pred             HHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        25 ~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .++.++.++|+|.|+ |.+|+.+++.|...|. +++++|..
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            456788899999997 8899999999999995 47777653

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.97  E-value=0.015  Score=50.20  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv---g~i~lvD~d   64 (288)
                      ..+|.|||+|.+|+.++++|...|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4589999999999999999999995   579999864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.95  E-value=0.037  Score=52.70  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus         4 ~~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            4 AQANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TTBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            34689999999999999999999997 58888863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.94  E-value=0.014  Score=55.56  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=64.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .||+|+|+|-+|..+|+.|...|. .++++|.+                      ..+++    ++.+.   ..+.+...
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d----------------------~~~~~----~~~~~---~~~~~i~G   53 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN-DITIVDKD----------------------GDRLR----ELQDK---YDLRVVNG   53 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE-EEEEEESC----------------------HHHHH----HHHHH---SSCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHH----HHHHh---cCcEEEEE
Confidence            479999999999999999999884 59999972                      11222    22221   13444444


Q ss_pred             CCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       112 ~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      +..+   +...-++++|++|.++++.+....+..++++. .+.+-+.+..
T Consensus        54 d~~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~-~~~~~~iar~  102 (461)
T 4g65_A           54 HASHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTL-FNTPNRIARI  102 (461)
T ss_dssp             CTTCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHH-HCCSSEEEEC
T ss_pred             cCCCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHh-cCCccceeEe
Confidence            4433   23445788999999998888887777788762 1444444443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.93  E-value=0.034  Score=50.29  Aligned_cols=104  Identities=11%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh--hCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNP  102 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~--lNp  102 (288)
                      ..+|.|||+|.+|+.++..|+..|.      ..++++|.+.-              ..   ++.+++.+.+.-..  .-|
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~--------------~~---~~~~~~~l~~~~~~~~~~~   70 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED--------------IG---GKKLTEIINTQHENVKYLP   70 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB--------------SS---SSBHHHHHHHHSCCTTTST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh--------------hh---hhHHHHHHHhcCcccccCC
Confidence            3589999999999999999999993      46888886321              01   33344444432110  011


Q ss_pred             Cc----eeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          103 MV----RVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       103 ~v----~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ..    .+...     ....+.++++|+||.|.-+......+.++....+.+..++..
T Consensus        71 ~~~~~~~~~~~-----~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~  123 (354)
T 1x0v_A           71 GHKLPPNVVAV-----PDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL  123 (354)
T ss_dssp             TCCCCTTEEEE-----SSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEEC
T ss_pred             cccCccCeEEE-----cCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            11    11111     112345778999999986654444444443222234445543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.93  E-value=0.024  Score=50.64  Aligned_cols=35  Identities=9%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45789999999999999999999997 588888643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.92  E-value=0.026  Score=49.77  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=28.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|||+|.+|+.++..|+..|. +++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            479999999999999999999995 6888875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.92  E-value=0.021  Score=50.76  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ..+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 588888643

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.90  E-value=0.036  Score=49.53  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh----CCCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF----NPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l----Np~v~v~  107 (288)
                      ||.|||+|.+|+.+|-.|+..|. +++.|+|-                      -+.|++..+--|+..    +...++.
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~G~a~DL~h~~~~~~~~~~i~   59 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI----------------------AEDLAVGEAMDLAHAAAGIDKYPKIV   59 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS----------------------SHHHHHHHHHHHHHHHGGGTCCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCCcchhhhhhhhcccccCCCCCeEe
Confidence            79999999999999999999986 78999984                      223444445555553    3223333


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...      +.+.+++.|+||++..
T Consensus        60 ~~~------d~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           60 GGA------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             EES------CGGGGTTCSEEEECCC
T ss_pred             cCC------CHHHhCCCCEEEEecC
Confidence            221      2346789999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.89  E-value=0.041  Score=52.07  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=29.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|.|||+|.+|..+|.+|+..|. .++++|.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999996 689998753

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.88  E-value=0.016  Score=51.04  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|..++++|...|. +++++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            489999999999999999999996 58888863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.88  E-value=0.021  Score=52.32  Aligned_cols=32  Identities=16%  Similarity=0.120  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|.|||+|.+|+.++..|+..|. .++++|.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r   60 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSY   60 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeC
Confidence            4689999999999999999999995 4888876

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.87  E-value=0.009  Score=52.98  Aligned_cols=33  Identities=9%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|+|+|+||+|..+++.|+..|  +++++|.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r  158 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANR  158 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEEC
Confidence            56789999999999999999999999  8999875

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.86  E-value=0.051  Score=47.85  Aligned_cols=97  Identities=11%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++.. -....+.                                .++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~-~~~~~~~--------------------------------~~~~~   47 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRS-IGNKAIN--------------------------------DYEYR   47 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-CC-------------------------------------CCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC-CCcccCC--------------------------------ceEEE
Confidence            46899999 57899999999999996 57777753 1100000                                22333


Q ss_pred             ecCCC-CcchhhhccCcEEEEecCC-------------hhhHHHHHHHHHhcCCCce-EEEEeeecceE
Q 023036          110 KGDLS-SLDGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRVA-FYTVDCRDSCG  163 (288)
Q Consensus       110 ~~~~~-~~~~~~~~~~dvVi~~~~~-------------~~~~~~i~~~~~~~~~~ip-~i~~~~~G~~G  163 (288)
                      ..++. +...+.++++|+||.+...             ......+-+.|++  .+++ ||..++.+.+|
T Consensus        48 ~~Dl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~--~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           48 VSDYTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYE--NNISNIVYASTISAYS  114 (311)
T ss_dssp             ECCCCHHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGCC
T ss_pred             EccccHHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEccHHHhC
Confidence            33333 1113345567777765431             2223566778887  6666 88888877766

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.86  E-value=0.029  Score=48.95  Aligned_cols=32  Identities=13%  Similarity=-0.016  Sum_probs=28.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            69999999999999999999996 699998754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.86  E-value=0.013  Score=49.66  Aligned_cols=32  Identities=6%  Similarity=0.087  Sum_probs=27.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEE-EcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTL-MDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~l-vD~   63 (288)
                      ..+|.|||+|.+|..+++.|+..|.. +++ +|.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP-AIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC-EEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            46899999999999999999999974 555 554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.84  E-value=0.093  Score=46.98  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|+|+|.+|+.++..|+..|.-.++++|-
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di   34 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeC
Confidence            58999999999999999999999744999985

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.83  E-value=0.031  Score=49.96  Aligned_cols=72  Identities=13%  Similarity=0.045  Sum_probs=48.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC----CCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN----p~v~v~  107 (288)
                      +|.|+|+|.+|+.++..|+..|.. +++++|-+                      ..|++..+-.++..+    ...++.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~----------------------~~~~~g~~~dl~~~~~~~~~~~~i~   59 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA----------------------EDLAVGEAMDLAHAAAGIDKYPKIV   59 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS----------------------HHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC----------------------hHHHHHHHHHHHhhhhhcCCCCEEE
Confidence            799999999999999999999974 79999851                      223332233344333    233444


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...      +.+.++++|+||.+..
T Consensus        60 ~t~------d~~a~~~aDiVViaag   78 (294)
T 1oju_A           60 GGA------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             EES------CGGGGTTCSEEEECCC
T ss_pred             EeC------CHHHhCCCCEEEECCC
Confidence            322      1457889999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.83  E-value=0.03  Score=49.17  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      |...+|.|||+|.+|+.+++.|...|. ..++++|.
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   39 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR   39 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcC
Confidence            334689999999999999999999974 35777775

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.82  E-value=0.061  Score=48.06  Aligned_cols=71  Identities=21%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC---Cceeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRVSV  108 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp---~v~v~~  108 (288)
                      +|.|+|+|.+|+.++..|+..|. +.++++|.+.                      .|++..+..+...+|   .+++..
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~----------------------~~~~~~~~~l~~~~~~~~~~~i~~   59 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE----------------------DRAQAEAEDIAHAAPVSHGTRVWH   59 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH----------------------HHHHHHHHHHTTSCCTTSCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH----------------------HHHHHHHHhhhhhhhhcCCeEEEE
Confidence            79999999999999999999995 5799998631                      133333334443332   233332


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                        .     +.+.+++.|+||.+..
T Consensus        60 --~-----~~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A           60 --G-----GHSELADAQVVILTAG   76 (304)
T ss_dssp             --E-----CGGGGTTCSEEEECC-
T ss_pred             --C-----CHHHhCCCCEEEEcCC
Confidence              1     1345789999999874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.78  E-value=0.053  Score=48.94  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.++..|+..|...++++|-
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di   36 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI   36 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            58999999999999999999999855999985

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.77  E-value=0.055  Score=48.13  Aligned_cols=107  Identities=13%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +.+|+|.| .|++|..+++.|+..|.. ++++|...-.                  ..    ...+.+.+..+ ..+..+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~------------------~~----~~~~~~~~~~~-~~~~~~   60 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNS------------------KR----EAIARIEKITG-KTPAFH   60 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSS------------------CT----HHHHHHHHHHS-CCCEEE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcc------------------hH----HHHHHHHhhcC-CCceEE
Confidence            56899999 578999999999999954 7777642110                  00    11222222211 134455


Q ss_pred             ecCCCCc--chhhhc--cCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          110 KGDLSSL--DGEFYD--KFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       110 ~~~~~~~--~~~~~~--~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      ..++.+.  ....++  +.|+||.+....                 .....+-+.|++  .++ .+|..++.+.+|
T Consensus        61 ~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~SS~~~~g  134 (341)
T 3enk_A           61 ETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE--RAVKRIVFSSSATVYG  134 (341)
T ss_dssp             CCCTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGBC
T ss_pred             EeecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHh--CCCCEEEEEecceEec
Confidence            5555442  134454  688888765321                 112345567777  554 688877776665

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.76  E-value=0.0091  Score=53.64  Aligned_cols=51  Identities=14%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             hhhhhhhh--ccHH-HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           13 LYDRQIRV--WGAD-AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        13 rYdRqirl--~G~~-~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+++++-  |... ....|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       103 ~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~  156 (303)
T 1qp8_A          103 QYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT  156 (303)
T ss_dssp             HHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34555543  6321 1235889999999999999999999999996 48888863

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.76  E-value=0.018  Score=51.77  Aligned_cols=35  Identities=6%  Similarity=0.016  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~   63 (288)
                      ....+|.|||+|..|..++++|... |+.+++++|.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr  168 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR  168 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4567899999999999999999988 8888999875

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.75  E-value=0.015  Score=53.34  Aligned_cols=50  Identities=16%  Similarity=0.102  Sum_probs=38.9

Q ss_pred             hhhhhhhh--ccHHHH----HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           13 LYDRQIRV--WGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        13 rYdRqirl--~G~~~q----~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+++++-  |.....    ..|.+++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus       140 ~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr  195 (351)
T 3jtm_A          140 PGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR  195 (351)
T ss_dssp             HHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECS
T ss_pred             HHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCC
Confidence            34555553  765443    258899999999999999999999999976 777775

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.75  E-value=0.037  Score=50.63  Aligned_cols=78  Identities=10%  Similarity=0.091  Sum_probs=56.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ....+|+|||+|+.|..+++.|.. .++.+++++|.                      ...|++.+++.+.+. +.+.+.
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r----------------------~~~~a~~la~~~~~~-~g~~~~  183 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT----------------------DPLATAKLIANLKEY-SGLTIR  183 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHTTC-TTCEEE
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC----------------------CHHHHHHHHHHHHhc-cCceEE
Confidence            356789999999999999999864 47889999875                      344777777776552 233333


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCCh
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ..     +...+.+.++|+||.|+.+.
T Consensus       184 ~~-----~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          184 RA-----SSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             EC-----SSHHHHHTTCSEEEECCCCS
T ss_pred             Ee-----CCHHHHHhcCCEEEEeccCC
Confidence            32     12356678899999998653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.74  E-value=0.036  Score=49.24  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+|.||| +|.+|..+++.|...|. .++++|.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            35899999 99999999999999997 58888864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.74  E-value=0.036  Score=46.17  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=58.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.                      .+..    .+.  .+  .++....
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~----------------------~~~~----~~~--~~--~~~~~~~   50 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP----------------------QKAA----DRL--GA--TVATLVK   50 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH----------------------HHHH----HHT--CT--TSEEEEC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc----------------------cccc----ccc--CC--CceEEec
Confidence            6999997 8899999999999995 577765411                      1111    111  12  3444555


Q ss_pred             CCCCcchhhhccCcEEEEecCC----------hhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCS----------VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~----------~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ++.+...+.+.++|+||.+...          ......+-+.|++  .+..+|..++.+
T Consensus        51 D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~v~~SS~~  107 (224)
T 3h2s_A           51 EPLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRN--SDTLAVFILGSA  107 (224)
T ss_dssp             CGGGCCHHHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTT--CCCEEEEECCGG
T ss_pred             ccccccHhhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHH--cCCcEEEEecce
Confidence            5544333677899999987643          2223445556666  556677766654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.72  E-value=0.087  Score=43.93  Aligned_cols=98  Identities=20%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      .+|+|.|+ |.+|..+++.|...| .++++++...-....+                             .+  .++.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-----------------------------~~--~~~~~~   52 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIE-----------------------------NE--HLKVKK   52 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCC-----------------------------CT--TEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhc-----------------------------cC--ceEEEE
Confidence            58999995 789999999999999 4688887642211111                             11  233444


Q ss_pred             cCCCCc--chhhhccCcEEEEecCC-----------hhhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          111 GDLSSL--DGEFYDKFDVVVVSCCS-----------VTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       111 ~~~~~~--~~~~~~~~dvVi~~~~~-----------~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      .++.+.  ..+.++++|+||.+...           ......+-+.|++  .++ .+|..++.+.++
T Consensus        53 ~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~v~~Ss~~~~~  117 (227)
T 3dhn_A           53 ADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKK--AGVNRFLMVGGAGSLF  117 (227)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHH--TTCSEEEEECCSTTSE
T ss_pred             ecCCCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHH--hCCCEEEEeCChhhcc
Confidence            444432  23456677887776432           2334566677877  655 677777766443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.70  E-value=0.027  Score=51.51  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCce
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVR  105 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~  105 (288)
                      |.+.+|.|+|+ |.+|+.+|..++..|. ..++++|-                      .+.|++..+..|+.. .|..+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi----------------------~~~k~~g~a~DL~~~~~~~~~   63 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDP----------------------FAVGLEGVAEEIRHCGFEGLN   63 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECS----------------------CHHHHHHHHHHHHHHCCTTCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeC----------------------CchhHHHHHHhhhhCcCCCCc
Confidence            45679999997 9999999999999997 57999985                      223455444444443 23223


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      +...     ....+.++++|+||.+..
T Consensus        64 i~~t-----~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A           64 LTFT-----SDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             CEEE-----SCHHHHHTTEEEEEECCC
T ss_pred             eEEc-----CCHHHHhCCCCEEEEccC
Confidence            3321     112456889999999854

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.68  E-value=0.051  Score=47.57  Aligned_cols=105  Identities=17%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~  108 (288)
                      .++|+|.|+ |.+|+.+++.|...| .++++++.+.-.           ..     ...|++.    ++++ .+.  ++.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~-----------~~-----~~~~~~~----~~~l~~~~--v~~   60 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTA-----------SS-----NSEKAQL----LESFKASG--ANI   60 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCT-----------TT-----THHHHHH----HHHHHTTT--CEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCccc-----------cc-----CHHHHHH----HHHHHhCC--CEE
Confidence            467999996 889999999999999 457766542100           00     0112222    2222 223  445


Q ss_pred             eecCCCCc--chhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      ...++.+.  ....++++|+||.+...  ......+-+.|++  .+ ++.+...++|
T Consensus        61 v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  115 (308)
T 1qyc_A           61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKE--VGTVKRFFPSEFG  115 (308)
T ss_dssp             ECCCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEeccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHh--cCCCceEeecccc
Confidence            55555542  24567889999988653  2344567778877  55 5444333333

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.66  E-value=0.09  Score=47.09  Aligned_cols=113  Identities=11%  Similarity=0.066  Sum_probs=68.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCce
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~  105 (288)
                      .+...+|+|.|+ |.+|+.+++.|+..|. +++++|...-.                  ...+.+.+.+.+... .+  .
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~~~~~~~~~~~~~~~~~--~   82 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG------------------HQRNLDEVRSLVSEKQWS--N   82 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC------------------CHHHHHHHHHHSCHHHHT--T
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc------------------chhhHHHHhhhcccccCC--c
Confidence            366789999997 8899999999999995 57777652110                  111222223222221 12  3


Q ss_pred             eeeeecCCCCc--chhhhccCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          106 VSVEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       106 v~~~~~~~~~~--~~~~~~~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      +.....++.+.  ..+.++++|+||.+....                 .....+-+.|++  .++ .||..++.+.+|
T Consensus        83 ~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~~v~~SS~~~~~  158 (352)
T 1sb8_A           83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD--AKVQSFTYAASSSTYG  158 (352)
T ss_dssp             EEEEECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--TTCSEEEEEEEGGGGT
T ss_pred             eEEEECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeccHHhcC
Confidence            45555666543  245677899999875421                 112345567777  554 578777776654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.65  E-value=0.049  Score=49.19  Aligned_cols=109  Identities=14%  Similarity=0.069  Sum_probs=65.1

Q ss_pred             HHHHHHhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           24 DAQRRLSKSHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG-~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      .+...|+.++|+|.| .|.+|+.+++.|... |. +++.+|...-....           +               .+ .
T Consensus        17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~-----------~---------------~~-~   68 (372)
T 3slg_A           17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGD-----------L---------------VK-H   68 (372)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGG-----------G---------------GG-S
T ss_pred             cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhh-----------h---------------cc-C
Confidence            345667889999999 588999999999998 64 58887753211000           0               00 1


Q ss_pred             CCceeeeeecCCC-Cc--chhhhccCcEEEEecCC--h---------------hhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          102 PMVRVSVEKGDLS-SL--DGEFYDKFDVVVVSCCS--V---------------TTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       102 p~v~v~~~~~~~~-~~--~~~~~~~~dvVi~~~~~--~---------------~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      +  .++.+..++. +.  ..+.++++|+||.+...  .               .....+-+.|++  .+..||..++.+.
T Consensus        69 ~--~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~v~~SS~~v  144 (372)
T 3slg_A           69 E--RMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVK--YGKHLVFPSTSEV  144 (372)
T ss_dssp             T--TEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHH--HTCEEEEECCGGG
T ss_pred             C--CeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHH--hCCcEEEeCcHHH
Confidence            2  3455555655 32  23456788999875431  1               111345677777  4578998888877


Q ss_pred             eEE
Q 023036          162 CGE  164 (288)
Q Consensus       162 ~G~  164 (288)
                      +|.
T Consensus       145 yg~  147 (372)
T 3slg_A          145 YGM  147 (372)
T ss_dssp             GBS
T ss_pred             hCC
Confidence            764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.54  E-value=0.023  Score=51.16  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=28.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      +|.|||+|.+|+.++..|+..|. +.++++|.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~   33 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            79999999999999999999995 46888885

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.54  E-value=0.028  Score=51.09  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=54.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc-
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-  104 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v-  104 (288)
                      +.....+|.|+|+|.+|+.++..|+..|. ..++|+|-                      ...|++..+..|+...+.. 
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~g~a~DL~~~~~~~~   72 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDV----------------------IEDKLKGEMMDLQHGSLFLK   72 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGCS
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeC----------------------ChHHHHHHHHhhhhhhhccC
Confidence            45677899999999999999999999997 47999985                      3336666666676653221 


Q ss_pred             --eeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          105 --RVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       105 --~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                        .+.. ..     +.+.++++|+||.+..
T Consensus        73 ~~~i~~-~~-----d~~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           73 TPKIVS-SK-----DYSVTANSKLVIITAG   96 (331)
T ss_dssp             CCEEEE-CS-----SGGGGTTEEEEEECCS
T ss_pred             CCeEEE-cC-----CHHHhCCCCEEEEccC
Confidence              2211 11     2235889999998753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.54  E-value=0.046  Score=48.49  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |++|+.+++.|+..|. +++++|.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            35678999996 8899999999999995 6887775

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.53  E-value=0.027  Score=50.39  Aligned_cols=31  Identities=10%  Similarity=-0.055  Sum_probs=27.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+|+|+|+|++|+.++..|+ +| ..+++++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r   32 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTR   32 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT-SEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC-CceEEEEC
Confidence            468999999999999999999 88 46888875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.53  E-value=0.066  Score=49.02  Aligned_cols=90  Identities=9%  Similarity=0.089  Sum_probs=52.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC------CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh--hCCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNPM  103 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv------g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~--lNp~  103 (288)
                      .+|.|||+|.+|+.++..|+.+|.      ..++++|.+.-              ..   ++.+++.+.+.-..  .-|.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~--------------~~---~~~~~~~l~~~~~~~~~~~~   84 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF--------------VN---GERMVDIINNKHENTKYLKG   84 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC--------------------CCHHHHHHHHCBCTTTSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh--------------hh---hHHHHHHHHhcCcccccCCc
Confidence            479999999999999999999992      46888885311              01   33455554432110  0111


Q ss_pred             ce----eeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHH
Q 023036          104 VR----VSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEK  143 (288)
Q Consensus       104 v~----v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~  143 (288)
                      ..    +...     ....+.++++|+||.|.-+......+.++
T Consensus        85 ~~~~~~i~~~-----~~~~ea~~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           85 VPLPHNIVAH-----SDLASVINDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             CBCCTTEEEE-----SSTHHHHTTCSEEEECCCHHHHHHHHHHH
T ss_pred             ccCcCCeEEE-----CCHHHHHcCCCEEEEcCCHHHHHHHHHHH
Confidence            11    1111     11235567899999998664444444444

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.53  E-value=0.041  Score=47.34  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC-ce
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-VR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~-v~  105 (288)
                      .+++++++|.|+ ||+|.++++.|+..|. ++.++|.                      ...+.+.+++.+.+.++. .+
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r----------------------~~~~~~~~~~~~~~~~~~~~~   60 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIAR----------------------SKQNLEKVHDEIMRSNKHVQE   60 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHHhccccCc
Confidence            356788999985 6999999999999997 5888765                      223455666666666554 45


Q ss_pred             eeeeecCCCC
Q 023036          106 VSVEKGDLSS  115 (288)
Q Consensus       106 v~~~~~~~~~  115 (288)
                      +..+..++.+
T Consensus        61 ~~~~~~Dv~~   70 (250)
T 3nyw_A           61 PIVLPLDITD   70 (250)
T ss_dssp             CEEEECCTTC
T ss_pred             ceEEeccCCC
Confidence            5555555544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.53  E-value=0.029  Score=53.14  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ..++|+|+|+|++|..+++.|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            46789999999999999999999995 599988753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.06  Score=51.63  Aligned_cols=122  Identities=14%  Similarity=0.094  Sum_probs=65.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~  108 (288)
                      .+.+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+..... ...     |-.-+....+.+..+ .+++-+..
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~~~-----gi~~~~s~~e~v~~l~~aDvVil~   81 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQSKVDHFLANEA-KGK-----SIIGATSIEDFISKLKRPRKVMLL   81 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSHHHHHHHHTTT-TTS-----SEECCSSHHHHHHTSCSSCEEEEC
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHcccc-cCC-----CeEEeCCHHHHHhcCCCCCEEEEE
Confidence            46789999999999999999999997 58998864322222211000 000     100001112223322 24444444


Q ss_pred             eecC--CCCcc---hhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          109 EKGD--LSSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       109 ~~~~--~~~~~---~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .+..  +.+..   ...++.-++||++... +.....+.+.+.+  .++.|+.+...|
T Consensus        82 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~--~g~~~v~~pVsg  137 (497)
T 2p4q_A           82 VKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKK--KGILFVGSGVSG  137 (497)
T ss_dssp             CCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEES
T ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHH--cCCceeCCCccc
Confidence            3331  11111   1234445677776543 3444556667766  677888766554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.48  E-value=0.12  Score=45.10  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCC-cHHHHHHHHHhhhCCCceeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK-TIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~-~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.-+            . -   .. .|++.+ +.+..  +.  ++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~------------~-~---~~~~~~~~~-~~l~~--~~--v~~   59 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTIT------------A-A---NPETKEELI-DNYQS--LG--VIL   59 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCC------------S-S---CHHHHHHHH-HHHHH--TT--CEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcc------------c-C---ChHHHHHHH-HHHHh--CC--CEE
Confidence            357999996 8899999999999994 57776542100            0 0   01 233322 22222  23  444


Q ss_pred             eecCCCCc--chhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      ...++.+.  ....++++|+||.+...  ......+-+.|++  .+ ++.+....+|
T Consensus        60 v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  114 (307)
T 2gas_A           60 LEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKE--AGNVKKFFPSEFG  114 (307)
T ss_dssp             EECCTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEeCCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHh--cCCceEEeecccc
Confidence            55555542  24567889999988653  3445667777877  55 5444333333

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.48  E-value=0.058  Score=46.96  Aligned_cols=82  Identities=17%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..|++++|+|.| .|++|.++++.|+..|. ++.++|.+                      ..+.+.+.+.+++......
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~   84 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART----------------------VGNIEELAAECKSAGYPGT   84 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC----------------------HHHHHHHHHHHHHTTCSSE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC----------------------hHHHHHHHHHHHhcCCCce
Confidence            357888999998 56899999999999996 47776641                      1233444555555543335


Q ss_pred             eeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..+       +.+.|+||.+.
T Consensus        85 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~A  119 (279)
T 1xg5_A           85 LIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA  119 (279)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            555555554421  122       23688888764

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.47  E-value=0.063  Score=48.39  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC---CCceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN---PMVRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN---p~v~v~  107 (288)
                      .+|.|+|+|.+|..++..|+..|. .+|.|+|-                      ...|++..+..|....   +.+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~~v~   63 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV----------------------VKDRTKGDALDLEDAQAFTAPKKIY   63 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHGGGGGSCCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC----------------------CchHHHHHHHHHHHHHHhcCCeEEE
Confidence            689999999999999999999885 56888884                      2235555555555443   333343


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .  .     ..+.+++.|+||.+..
T Consensus        64 ~--~-----~~~a~~~aDvVii~ag   81 (318)
T 1ez4_A           64 S--G-----EYSDCKDADLVVITAG   81 (318)
T ss_dssp             E--C-----CGGGGTTCSEEEECCC
T ss_pred             E--C-----CHHHhCCCCEEEECCC
Confidence            2  1     2455889999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.46  E-value=0.021  Score=51.82  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|+|+|.+|+.++..|+..|...++++|-
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~   41 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDV   41 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence            58999999999999999999999855999986

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.44  E-value=0.12  Score=46.18  Aligned_cols=106  Identities=9%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..+...+|+|.|+ |.+|+.+++.|...|. +++++|...-...          ..+               .++...-.
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------~~~---------------~~~~~~~~   76 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGRK----------RNV---------------EHWIGHEN   76 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCG----------GGT---------------GGGTTCTT
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccch----------hhh---------------hhhccCCc
Confidence            3567789999997 8899999999999995 5777765211100          000               11100112


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecCCh---------hh--------HHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCCSV---------TT--------KKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~~~---------~~--------~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      ++....++.+   ..+.++|+||.+....         ..        ...+-+.|++  .++.+|..++.+.+|
T Consensus        77 ~~~~~~D~~~---~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           77 FELINHDVVE---PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLLLASTSEVYG  146 (343)
T ss_dssp             EEEEECCTTS---CCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEGGGGB
T ss_pred             eEEEeCccCC---hhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCcEEEECcHHHhC
Confidence            3444444332   2356789999875321         11        2345567777  566888888877665

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.37  E-value=0.056  Score=46.78  Aligned_cols=81  Identities=17%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|.+++|+|.| .||+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+.+..+..++
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r----------------------~~~~~~~~~~~~~~~~~~~~~   66 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV----------------------SSEGLEASKAAVLETAPDAEV   66 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTCCE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhhcCCceE
Confidence            46788999998 56899999999999996 4777764                      112344455556555444455


Q ss_pred             eeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..+       +...|+||.+.
T Consensus        67 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           67 LTTVADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66666655421  122       23678888764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.36  E-value=0.048  Score=49.11  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.+.                      .+++ +    ++  +  .+.+..
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~----------------------~~~~-~----~~--~--~~~~i~  161 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN----------------------VRKK-V----LR--S--GANFVH  161 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG----------------------GHHH-H----HH--T--TCEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh----------------------hhhh-H----Hh--C--CcEEEE
Confidence            5689999999999999999999987  88888621                      2333 2    22  1  234444


Q ss_pred             cCCCCc---chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       111 ~~~~~~---~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .+..+.   ...-++++|.||.+.++.+....+...+++
T Consensus       162 gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~  200 (336)
T 1lnq_A          162 GDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRK  200 (336)
T ss_dssp             SCTTSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHT
T ss_pred             eCCCCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHH
Confidence            444332   123367889999998887777778888888

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.35  E-value=0.043  Score=47.38  Aligned_cols=80  Identities=21%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             HHhcCcEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      .|++++|+|.|+ | |+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+ .+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~-~~   74 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDY----------------------HERRLGETRDQLADLGL-GR   74 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTCS-SC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecC----------------------CHHHHHHHHHHHHhcCC-Cc
Confidence            477899999998 6 7999999999999965 777764                      22244455555655442 35


Q ss_pred             eeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..+       +...|+||.+.
T Consensus        75 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~A  109 (266)
T 3o38_A           75 VEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNA  109 (266)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            566666665421  111       23568877764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.33  E-value=0.012  Score=53.66  Aligned_cols=30  Identities=7%  Similarity=-0.022  Sum_probs=27.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|+.++.+|+.+|. .++++|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            89999999999999999999985 5888775

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.31  E-value=0.1  Score=47.01  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=49.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh----CCCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF----NPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l----Np~v~v~  107 (288)
                      +|.|+|+|.+|+.++..|+..|+ +.++++|-+                      ..|++..+..|+..    ...+++.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~----------------------~~k~~g~a~DL~~~~~~~~~~~~v~   59 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIK----------------------DGMPQGKALDMRESSPIHGFDTRVT   59 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS----------------------TTHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc----------------------hHHHHHHHHHHhccccccCCCcEEE
Confidence            79999999999999999999997 579999861                      22344334444442    2234444


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...      +.+.++++|+||.+..
T Consensus        60 ~~~------~~~a~~~aDvVii~ag   78 (314)
T 3nep_X           60 GTN------DYGPTEDSDVCIITAG   78 (314)
T ss_dssp             EES------SSGGGTTCSEEEECCC
T ss_pred             ECC------CHHHhCCCCEEEECCC
Confidence            321      2456789999999864

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.28  E-value=0.073  Score=48.16  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC---CCce
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN---PMVR  105 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN---p~v~  105 (288)
                      +..+|.|+|+|.+|..++..|+..|. .++.|+|-                      ...|++..+..|....   +.++
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~~   65 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI----------------------FKDKTKGDAIDLSNALPFTSPKK   65 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHTTGGGSCCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC----------------------CchHhHHHHHHHHHHHHhcCCeE
Confidence            34689999999999999999999885 56888884                      2235555455555433   3333


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      +..  .     ..+.+++.|+||.+..
T Consensus        66 i~~--~-----~~~a~~~aDvVii~ag   85 (326)
T 2zqz_A           66 IYS--A-----EYSDAKDADLVVITAG   85 (326)
T ss_dssp             EEE--C-----CGGGGGGCSEEEECCC
T ss_pred             EEE--C-----CHHHhCCCCEEEEcCC
Confidence            432  1     2455889999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.27  E-value=0.034  Score=49.58  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            679999999999999999999997 58898864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.26  E-value=0.12  Score=45.93  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++.+|+|.|+ |++|+.+++.|+..|. +++++|.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r   52 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDN   52 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3567789999996 8899999999999994 6888775

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.23  E-value=0.041  Score=47.76  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+.++...+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   64 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGR----------------------REENVNETIKEIRAQYPDAILQ   64 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------------------SHHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhhCCCceEE
Confidence            56788999985 68999999999999964 777764                      2234556667777777776777


Q ss_pred             eeecCCCCcc--hhh---hccCcEEEEec
Q 023036          108 VEKGDLSSLD--GEF---YDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~--~~~---~~~~dvVi~~~  131 (288)
                      ....++.+..  .+.   +...|++|.+.
T Consensus        65 ~~~~D~~~~~~~~~~~~~~g~id~lv~nA   93 (267)
T 3t4x_A           65 PVVADLGTEQGCQDVIEKYPKVDILINNL   93 (267)
T ss_dssp             EEECCTTSHHHHHHHHHHCCCCSEEEECC
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence            7766665421  222   34678888764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.21  E-value=0.11  Score=45.61  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=62.5

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..+|+|.|+ |.+|..+++.|...|. ++++++.+.-              ..   ...|++.+. .+.  .+.  ++..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~---~~~~~~~~~-~~~--~~~--~~~~   60 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VS---NIDKVQMLL-YFK--QLG--AKLI   60 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SS---CHHHHHHHH-HHH--TTT--CEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCc--------------cc---chhHHHHHH-HHH--hCC--eEEE
Confidence            468999995 8899999999999994 5777654210              00   011222221 121  233  4455


Q ss_pred             ecCCCCc--chhhhccCcEEEEecC------ChhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCC------SVTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~------~~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      ..++.+.  ....++++|+||.+..      +......+-+.|++  .+ ++.+....+|
T Consensus        61 ~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  118 (313)
T 1qyd_A           61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKE--AGNIKRFLPSEFG  118 (313)
T ss_dssp             CCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHH--SCCCSEEECSCCS
T ss_pred             eCCCCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHh--cCCCceEEecCCc
Confidence            5555542  2456789999998764      23445677788888  66 5444323333

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.21  E-value=0.12  Score=43.04  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=59.7

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|+|.| .|++|.++++.|+..|. ++++++.+.-.              .   ...             +  .++....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~--------------~---~~~-------------~--~~~~~~~   48 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQ--------------V---PQY-------------N--NVKAVHF   48 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGG--------------S---CCC-------------T--TEEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccc--------------h---hhc-------------C--CceEEEe
Confidence            699999 67899999999999994 58887753211              1   000             1  3444455


Q ss_pred             CCCC-c--chhhhccCcEEEEecCC---------hhhHHHHHHHHHhcCCCc-eEEEEeeecc
Q 023036          112 DLSS-L--DGEFYDKFDVVVVSCCS---------VTTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (288)
Q Consensus       112 ~~~~-~--~~~~~~~~dvVi~~~~~---------~~~~~~i~~~~~~~~~~i-p~i~~~~~G~  161 (288)
                      ++.+ .  ..+.++++|+||.+...         ......+-+.|++  .++ .+|..++.+.
T Consensus        49 D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~--~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           49 DVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEK--AEVKRFILLSTIFS  109 (219)
T ss_dssp             CTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHH--TTCCEEEEECCTTT
T ss_pred             cccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHH--hCCCEEEEECcccc
Confidence            5544 2  24456788998887542         2335567778877  664 5666666443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.20  E-value=0.051  Score=51.54  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=71.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..++|+|+|.|-+|..+|+.|-. + ..+++++.                      .+.|++.+++.|    |++  .+.
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~----------------------d~~r~~~la~~l----~~~--~Vi  283 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIER----------------------NLQRAEKLSEEL----ENT--IVF  283 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-T-SEEEEEES----------------------CHHHHHHHHHHC----TTS--EEE
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-c-CceEEEec----------------------CHHHHHHHHHHC----CCc--eEE
Confidence            35789999999999999999853 3 56888775                      555777666654    333  334


Q ss_pred             ecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          110 KGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       110 ~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      ..+..+   +.++-+.++|++|.++.+.+......-++++  .+++-+.+..
T Consensus       284 ~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~--~gv~kvIa~v  333 (461)
T 4g65_A          284 CGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKR--MGAKKVMVLI  333 (461)
T ss_dssp             ESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred             eccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHH--cCCccccccc
Confidence            444333   3466788999999999999999999999999  7776555443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.19  E-value=0.033  Score=48.95  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|||+|.+|..++++|...|. +++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999997 58888864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.18  E-value=0.048  Score=52.15  Aligned_cols=121  Identities=13%  Similarity=0.119  Sum_probs=68.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~~  109 (288)
                      ..+|.|||+|.+|..+|++|+..|. +++++|.+.-....+...-.. ...+  .+   +....+.++.+ .+++-+...
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~-g~~i--~~---~~s~~e~v~~l~~aDvVil~V   76 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAK-GTKV--VG---AQSLKEMVSKLKKPRRIILLV   76 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTT-TSSC--EE---CSSHHHHHHTBCSSCEEEECS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcccC-CCce--ec---cCCHHHHHhhccCCCEEEEec
Confidence            4689999999999999999999996 599998754322222111000 0000  00   01112223322 344434333


Q ss_pred             ecC--CCCc---chhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          110 KGD--LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       110 ~~~--~~~~---~~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +..  +.+.   ....++.-++||+++.. +....++.+.+.+  .++.|+.+...|
T Consensus        77 p~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~--~Gi~fvd~pVsG  131 (484)
T 4gwg_A           77 KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKA--KGILFVGSGVSG  131 (484)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEES
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHh--hccccccCCccC
Confidence            321  1111   12235566888887654 4455566677777  889999887765

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.17  E-value=0.12  Score=44.23  Aligned_cols=35  Identities=11%  Similarity=0.373  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .|++|.++++.|+..|...+.++|.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r   38 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEec
Confidence            5678899998 5689999999999999876888764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.17  E-value=0.087  Score=50.18  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|+.++.+|+..|. .++++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~   34 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999997 48998864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.14  E-value=0.12  Score=49.12  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|||+|.+|+.++.+|+..|. .++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            79999999999999999999997 48898864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.11  E-value=0.059  Score=46.47  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|..++++|...| ..++++|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~   34 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGS   34 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECC
Confidence            47999999999999999999998 47888876

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.09  E-value=0.074  Score=46.03  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |++++++|.|+ +|+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+.++..++.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   62 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCAR----------------------DGERLRAAESALRQRFPGARLF   62 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHSTTCCEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHHhcCCceEE
Confidence            56788999985 68999999999999975 777765                      2224555566666656655566


Q ss_pred             eeecCCCCcc--h-------hhhccCcEEEEec
Q 023036          108 VEKGDLSSLD--G-------EFYDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~--~-------~~~~~~dvVi~~~  131 (288)
                      .+..++.+..  .       +.+...|++|.+.
T Consensus        63 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   95 (265)
T 3lf2_A           63 ASVCDVLDALQVRAFAEACERTLGCASILVNNA   95 (265)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6666665421  1       1234678877754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.08  E-value=0.19  Score=45.24  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=66.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHH--hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVL--AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l--~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      +...+|+|.| .|.+|+.+++.|+.  .|. +++++|...-...-..+    ..+.+   ++.         ..+. ...
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~----~~~~~---~~~---------~~~~-~~~   69 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNN----RPSSL---GHF---------KNLI-GFK   69 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCC---CCG---------GGGT-TCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCcccccccc----chhhh---hhh---------hhcc-ccC
Confidence            5678999997 57899999999999  775 47777753221000000    00111   110         1111 123


Q ss_pred             eeeeecCCCCcc--hhh-hccCcEEEEecCC-------h--------hhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          106 VSVEKGDLSSLD--GEF-YDKFDVVVVSCCS-------V--------TTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-~~~~dvVi~~~~~-------~--------~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      +..+..++.+..  ... ..++|+||.+...       .        .....+-+.|++  .+++||.+++.+.+|.
T Consensus        70 ~~~~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~--~~~~~V~~SS~~vyg~  144 (362)
T 3sxp_A           70 GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARS--KKAKVIYASSAGVYGN  144 (362)
T ss_dssp             SEEEECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHH--TTCEEEEEEEGGGGCS
T ss_pred             ceEEECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHH--cCCcEEEeCcHHHhCC
Confidence            455555655421  233 5688999876531       1        112356678888  7777999888777763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.06  E-value=0.067  Score=48.60  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ...+|.|+|+|.+|+.++..|+..|+ +.++++|-
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di   54 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDV   54 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            35789999999999999999999997 68999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.03  E-value=0.14  Score=45.75  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=27.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      +|.|+|+|.+|+.++..|+..|. .+++++|.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~   33 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDV   33 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            79999999999999999999764 56999986

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.03  E-value=0.09  Score=47.40  Aligned_cols=73  Identities=16%  Similarity=0.089  Sum_probs=53.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...+|+|||+|+.|...++.|... ++.++.++|.                      ...|++.+++.+....  +.+. 
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r----------------------~~~~a~~la~~~~~~~--~~~~-  178 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV----------------------REKAAKKFVSYCEDRG--ISAS-  178 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHHHTT--CCEE-
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhcC--ceEE-
Confidence            467899999999999999999874 6889999875                      3447777777776532  2332 


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..     ...+.+ ++|+|+.|+.+
T Consensus       179 ~~-----~~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          179 VQ-----PAEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             EC-----CHHHHT-SSSEEEECCCC
T ss_pred             EC-----CHHHHh-CCCEEEEeeCC
Confidence            21     134566 89999999865

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.01  E-value=0.046  Score=49.29  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ..+|.|+|+|.+|..++-.|+..|. +++.++|-
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di   40 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDV   40 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4689999999999999999999986 67999996

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.01  E-value=0.15  Score=43.15  Aligned_cols=103  Identities=10%  Similarity=-0.003  Sum_probs=62.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +..++|+|.| .|++|..+++.|+..|-.++++++.+.-.   +.        ..   -              .+  .+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~---~~--------~~---~--------------~~--~~~   70 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK---IH--------KP---Y--------------PT--NSQ   70 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG---SC--------SS---C--------------CT--TEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh---hc--------cc---c--------------cC--CcE
Confidence            3456899999 58999999999999994467777653211   00        00   0              01  344


Q ss_pred             eeecCCCCc--chhhhccCcEEEEecCChh---hHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          108 VEKGDLSSL--DGEFYDKFDVVVVSCCSVT---TKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       108 ~~~~~~~~~--~~~~~~~~dvVi~~~~~~~---~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      .+..++.+.  ....++++|+||.+.....   ....+-+.+++  .++ .+|..++.+.++
T Consensus        71 ~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~--~~~~~iV~iSS~~~~~  130 (236)
T 3qvo_A           71 IIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKA--CDVKRLIFVLSLGIYD  130 (236)
T ss_dssp             EEECCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHH--TTCCEEEEECCCCC--
T ss_pred             EEEecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecceecC
Confidence            555555542  2456788999997764322   22345566766  554 477777766554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.96  E-value=0.097  Score=45.15  Aligned_cols=30  Identities=10%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|+.++++|+..|. +++++|.
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence            69999999999999999999996 5766543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.95  E-value=0.27  Score=41.27  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      .|.+++|+|.| .|++|.++++.|+..|.. +++++|.
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r   52 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR   52 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEc
Confidence            36778999999 589999999999999963 6888875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.93  E-value=0.061  Score=48.40  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=28.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|.|||+|.+|+.++.+|+.+|. .++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            46789999999999999999999995 5888775

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.93  E-value=0.26  Score=44.63  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +++..+|+|.|+ |.+|+.+++.|...|..+++++|...-...          +.+               . -.+  .+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------~~l---------------~-~~~--~v   80 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK----------INV---------------P-DHP--AV   80 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG----------GGS---------------C-CCT--TE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch----------hhc---------------c-CCC--ce
Confidence            466788999995 789999999999999556888775321100          001               0 011  34


Q ss_pred             eeeecCCCCc--chhhhccCcEEEEecCCh-----------------hhHHHHHHHHHhcCC-Cc-eEEEEeeecceEE
Q 023036          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSK-RV-AFYTVDCRDSCGE  164 (288)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~-~i-p~i~~~~~G~~G~  164 (288)
                      +.+..++.+.  ..+.++++|+||.+....                 .....+-+.|++  . ++ .||..++.+.+|.
T Consensus        81 ~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~~V~~SS~~vyg~  157 (377)
T 2q1s_A           81 RFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKH--FKRLKKVVYSAAGCSIAE  157 (377)
T ss_dssp             EEECSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTT--CSSCCEEEEEEEC-----
T ss_pred             EEEECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCCCeEEEeCCHHHcCC
Confidence            4444454432  134566889888765321                 112345567766  5 54 6888887766653

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.92  E-value=0.13  Score=46.18  Aligned_cols=36  Identities=8%  Similarity=-0.052  Sum_probs=30.4

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+.+|+|.| .|.+|+.+++.|...|. +++++|.
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   41 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSL   41 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeC
Confidence            356788999999 58899999999999995 6877775

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.92  E-value=0.11  Score=44.75  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSR   39 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999984 6899999999999996 5777764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.88  E-value=0.089  Score=43.85  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=61.4

Q ss_pred             CcEEEEc-CchHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCG-MKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ++|+|.| .|++|.++++.|+ ..|. ++++++.+.-                   +  +.+    .+.+..+  .+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~-------------------~--~~~----~~~~~~~--~~~~~   57 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLK-------------------T--RIP----PEIIDHE--RVTVI   57 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHH-------------------H--HSC----HHHHTST--TEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCcc-------------------c--cch----hhccCCC--ceEEE
Confidence            4599999 5899999999999 8887 5777765210                   0  000    1111222  34555


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCCc-eEEEEeeecce
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~  162 (288)
                      ..++.+.  ....++++|+||.+...  .. ...+-+.+++  .++ .+|..++.+.+
T Consensus        58 ~~D~~d~~~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~--~~~~~iv~iSs~~~~  112 (221)
T 3r6d_A           58 EGSFQNPGXLEQAVTNAEVVFVGAMESGSD-MASIVKALSR--XNIRRVIGVSMAGLS  112 (221)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHH--TTCCEEEEEEETTTT
T ss_pred             ECCCCCHHHHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHh--cCCCeEEEEeeceec
Confidence            5565542  24567889999987643  33 4555666766  554 46666665543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.88  E-value=0.051  Score=46.86  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|+.++++|+..|...++++|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r   32 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECC
Confidence            6999999999999999999999556888875

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.86  E-value=0.13  Score=45.70  Aligned_cols=36  Identities=8%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+...+|+|.| .|.+|+.+++.|+..| .+++++|..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   54 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNF   54 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECC
Confidence            45667899999 5789999999999999 568887753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.81  E-value=0.027  Score=52.21  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++..+|+|+|+|..|..+++.|+..|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5788999999999999999999999999999999975

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.79  E-value=0.15  Score=48.68  Aligned_cols=40  Identities=15%  Similarity=-0.091  Sum_probs=33.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v   66 (288)
                      ++..-.+|.|||+|.+|..+|.+|+.. |...++++|.+.-
T Consensus        14 ~~~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           14 ERGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             HHCSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             hcCCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            344556899999999999999999999 8646999987543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.76  E-value=0.036  Score=45.72  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...|+|||+|..|..+|..|++.|+. ++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ-VHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            35699999999999999999999986 9999964

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.73  E-value=0.055  Score=46.27  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      ++++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+  ++
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~--~~   60 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADI----------------------NAEAAEAVAKQIVADGG--TA   60 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--EE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcC----------------------CHHHHHHHHHHHHhcCC--cE
Confidence            467889999995 68999999999999975 777764                      22244555666665554  44


Q ss_pred             eeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..+       +...|+||.+.
T Consensus        61 ~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           61 ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            45555554421  122       23678888764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.73  E-value=0.051  Score=49.65  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~-l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|..+|+.|. ..|. ++..+|.
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~  195 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDV  195 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECC
Confidence            588899999999999999999998 8886 5888875

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.69  E-value=0.14  Score=45.57  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=63.4

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCCceeee
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~v~v~~  108 (288)
                      +++|+|.| .|.+|+.+++.|+..|. +++++|...-..    |.    ...    ...+    .+.+.++ .+  .+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----r~----~~~----~~~~----~~~l~~~~~~--~~~~   62 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAF----RG----GGS----LPES----LRRVQELTGR--SVEF   62 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSC----BC----SSS----SBHH----HHHHHHHHTC--CCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCccc----cc----ccc----cHHH----HHHHHhccCC--ceEE
Confidence            46899998 58899999999999995 577777532110    00    000    1111    2223322 22  3455


Q ss_pred             eecCCCCc--chhhhc--cCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          109 EKGDLSSL--DGEFYD--KFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~--~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      +..++.+.  ..+.++  ++|+||.+....                 .....+-+.|++  .++ .+|..++.+.+|
T Consensus        63 ~~~D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~SS~~~~g  137 (348)
T 1ek6_A           63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA--HGVKNLVFSSSATVYG  137 (348)
T ss_dssp             EECCTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGGC
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHH--hCCCEEEEECcHHHhC
Confidence            55555542  134455  689998875321                 112344566766  554 578877777665

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.68  E-value=0.12  Score=49.16  Aligned_cols=35  Identities=9%  Similarity=-0.001  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+.+|.|||+|.+|..+|..|+..|. +++++|.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46789999999999999999999996 599998643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.66  E-value=0.12  Score=45.94  Aligned_cols=30  Identities=10%  Similarity=0.140  Sum_probs=27.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.|||+|.+|+.++.+|+..|. .++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            69999999999999999999995 6888875

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.64  E-value=0.042  Score=47.97  Aligned_cols=50  Identities=14%  Similarity=0.125  Sum_probs=29.5

Q ss_pred             hhhhhhhh-ccHHHHH-HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           13 LYDRQIRV-WGADAQR-RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        13 rYdRqirl-~G~~~q~-~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.|+..- +|...+. .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         8 ~~~~~~~~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (270)
T 3ftp_A            8 HMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTAT   60 (270)
T ss_dssp             ---------------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccccccCCCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            44555443 6665443 477888888885 6899999999999997 4777764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.62  E-value=0.2  Score=48.41  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=59.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|+|+|+|-+|..+++.|...|.. ++++|.+.-....+.                             +.  +.....
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~-----------------------------~~--i~gD~t  396 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH-----------------------------VV--VYGDAT  396 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS-----------------------------CE--EESCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC-----------------------------CE--EEeCCC
Confidence            7999999999999999999999976 899997543211111                             11  111111


Q ss_pred             CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcC
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS  148 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~  148 (288)
                      +.+.+...-++++|.||.++++.+....+.-.+++.+
T Consensus       397 ~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~  433 (565)
T 4gx0_A          397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLH  433 (565)
T ss_dssp             SSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHC
Confidence            1111234557889999999988888888888998843

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.61  E-value=0.13  Score=44.82  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=53.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+.+.++. ++
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r----------------------~~~~~~~~~~~l~~~~~~-~~   64 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCR----------------------DVTKGHEAVEKLKNSNHE-NV   64 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHTTTCC-SE
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhcCCC-ce
Confidence            467788999985 6899999999999997 5777764                      223555566667666542 45


Q ss_pred             eeeecCCCCc-c--hh-------hhccCcEEEEecC
Q 023036          107 SVEKGDLSSL-D--GE-------FYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~-~--~~-------~~~~~dvVi~~~~  132 (288)
                      ..+..++.+. .  ..       .+...|+||.+..
T Consensus        65 ~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           65 VFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            5666666543 1  11       2347899988753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.59  E-value=0.085  Score=45.04  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r   45 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADL   45 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 46899999999999996 5887764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.58  E-value=0.017  Score=51.53  Aligned_cols=51  Identities=8%  Similarity=0.071  Sum_probs=39.1

Q ss_pred             hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+++++-  |.......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       102 ~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          102 ENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             HHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             hhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            35555443  54333345889999999999999999999999997 48888864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.54  E-value=0.14  Score=47.87  Aligned_cols=31  Identities=16%  Similarity=0.087  Sum_probs=28.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|||+|.+|..+|..|+..|. +++++|.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999996 58999864

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.47  E-value=0.27  Score=43.43  Aligned_cols=111  Identities=23%  Similarity=0.215  Sum_probs=62.5

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+.+|+|.| .|.+|+.+++.|+..|- .+++++|...-. .+.        +               .+.++...-.+.
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~--------~---------------~~~~~~~~~~~~   57 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNP--------A---------------NLKDLEDDPRYT   57 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCG--------G---------------GGTTTTTCTTEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-Cch--------h---------------HHhhhccCCceE
Confidence            346799999 58899999999999984 367777753210 000        0               011111111344


Q ss_pred             eeecCCCCc--chhhhccCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          108 VEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       108 ~~~~~~~~~--~~~~~~~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      .+..++.+.  ..+.+.++|+||.+....                 .....+-+.|++.+....+|..++.+.+|.
T Consensus        58 ~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~  133 (336)
T 2hun_A           58 FVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGD  133 (336)
T ss_dssp             EEECCTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCC
T ss_pred             EEEcCCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCC
Confidence            455555442  234457889988875321                 112344566666222247888888766653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.46  E-value=0.12  Score=44.76  Aligned_cols=80  Identities=19%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|++++|+|.| .||+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+++..+ .++
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r----------------------~~~~~~~~~~~l~~~~~-~~~   62 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGR----------------------STADIDACVADLDQLGS-GKV   62 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHTTSS-SCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhhCC-CcE
Confidence            46788899998 56899999999999997 5888775                      22244455555555432 245


Q ss_pred             eeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..+       +...|++|.+.
T Consensus        63 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   96 (262)
T 3pk0_A           63 IGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA   96 (262)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55555554421  111       23677777653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.43  E-value=0.11  Score=46.64  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC---Cceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp---~v~v~  107 (288)
                      .||.|+|+|.+|..++..|+..|. +++.|+|-                      ...|++..+..|....|   .+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~k~~g~a~dl~~~~~~~~~~~v~   58 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDL----------------------DRKLAQAHAEDILHATPFAHPVWVW   58 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------SHHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------ChhHHHHHHHHHHHhHhhcCCeEEE
Confidence            379999999999999999998875 57999885                      22355554555555332   33444


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .  .     +.+.+++.|+||.+..
T Consensus        59 ~--~-----~~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           59 A--G-----SYGDLEGARAVVLAAG   76 (310)
T ss_dssp             E--C-----CGGGGTTEEEEEECCC
T ss_pred             E--C-----CHHHhCCCCEEEECCC
Confidence            3  1     2445889999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.43  E-value=0.19  Score=43.86  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .++..+|+|.|+ |.+|+.+++.|...|. +++++|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            356789999997 7899999999999996 578877643

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.41  E-value=0.42  Score=41.25  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=58.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +|+|.|+ |.+|+.+++.|... |. ++++++.+.-.              .   ..         +.  .+  .++...
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~--------------~---~~---------~~--~~--~v~~~~   50 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEK--------------V---PD---------DW--RG--KVSVRQ   50 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGG--------------S---CG---------GG--BT--TBEEEE
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHH--------------H---HH---------hh--hC--CCEEEE
Confidence            6999995 78999999999887 54 57776542211              0   00         00  11  344555


Q ss_pred             cCCCCc--chhhhccCcEEEEecCC-------hhhHHHHHHHHHhcCCCc-eEEEEeeec
Q 023036          111 GDLSSL--DGEFYDKFDVVVVSCCS-------VTTKKLINEKCRKLSKRV-AFYTVDCRD  160 (288)
Q Consensus       111 ~~~~~~--~~~~~~~~dvVi~~~~~-------~~~~~~i~~~~~~~~~~i-p~i~~~~~G  160 (288)
                      .++.+.  ....++++|+||.+...       ......+-+.|++  .++ .+|..+++|
T Consensus        51 ~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~--~gv~~iv~~Ss~~  108 (289)
T 3e48_A           51 LDYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQ--SGVAHIIFIGYYA  108 (289)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHH--TTCCEEEEEEESC
T ss_pred             cCCCCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHH--cCCCEEEEEcccC
Confidence            555542  24567889999987542       1233466677877  664 477766654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.40  E-value=0.046  Score=47.96  Aligned_cols=32  Identities=16%  Similarity=0.086  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|.|||+|.+|+.++++|...|. +++++| +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CH
Confidence            479999999999999999999996 688888 54

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.38  E-value=0.038  Score=48.26  Aligned_cols=34  Identities=15%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++ +|+|+|+|+.|..++..|...|+.+|+++|.
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR  140 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNR  140 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence            456 9999999999999999999999999999986

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.38  E-value=0.091  Score=47.26  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=51.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ..++++|||+|..|...++.|... ++.+|+++|.+                        |++.+++++++.. .+.+..
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~------------------------~a~~la~~l~~~~-g~~~~~  174 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY------------------------ASPEILERIGRRC-GVPARM  174 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT------------------------CCHHHHHHHHHHH-TSCEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc------------------------HHHHHHHHHHHhc-CCeEEE
Confidence            467899999999999999999874 78999998863                        3334455554322 233333


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      .  +    ..+.+.++|+||.|+.+
T Consensus       175 ~--~----~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          175 A--A----PADIAAQADIVVTATRS  193 (313)
T ss_dssp             C--C----HHHHHHHCSEEEECCCC
T ss_pred             e--C----HHHHHhhCCEEEEccCC
Confidence            2  1    35667889999999865

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.37  E-value=0.18  Score=43.54  Aligned_cols=97  Identities=13%  Similarity=0.110  Sum_probs=58.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ++|+|.|+ |.+|+.+++.|...  |. ++++++.+.              +        +++.    +..  +  .++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~--------------~--------~~~~----l~~--~--~~~~   49 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNV--------------E--------KAST----LAD--Q--GVEV   49 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCT--------------T--------TTHH----HHH--T--TCEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCH--------------H--------HHhH----Hhh--c--CCeE
Confidence            36999996 88999999999998  74 577776421              0        0011    111  1  2334


Q ss_pred             eecCCCCc--chhhhccCcEEEEecC-------ChhhHHHHHHHHHhcCCCc-eEEEEeeecc
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCC-------SVTTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~-------~~~~~~~i~~~~~~~~~~i-p~i~~~~~G~  161 (288)
                      ...++.+.  ..+.++++|+||.+..       +......+-+.|++  .++ .+|..++.+.
T Consensus        50 ~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~--~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           50 RHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARD--AGVKHIAYTGYAFA  110 (287)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHH--TTCSEEEEEEETTG
T ss_pred             EEeccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHH--cCCCEEEEECCCCC
Confidence            44455432  2345677888887653       22334456677777  655 6777776554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.37  E-value=0.22  Score=43.85  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .++|+|.|+ |.+|..+++.|...|. ++++++.+.                    . .+++.+ +.+..  +.  ++..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~--------------------~-~~~~~~-~~l~~--~~--v~~v   63 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN--------------------S-SKTTLL-DEFQS--LG--AIIV   63 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT--------------------C-SCHHHH-HHHHH--TT--CEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC--------------------C-chhhHH-HHhhc--CC--CEEE
Confidence            358999996 8899999999999994 476665411                    0 111111 11222  22  4445


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      ..++.+.  ....++++|+||.+...  ......+-+.|++  .+ ++.+...++|
T Consensus        64 ~~Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  117 (318)
T 2r6j_A           64 KGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKV--AGNIKRFLPSDFG  117 (318)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHH--HCCCCEEECSCCS
T ss_pred             EecCCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHh--cCCCCEEEeeccc
Confidence            5555542  24567889999988653  2344566677877  55 5444333333

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.37  E-value=0.065  Score=45.58  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   43 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDI   43 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence            66788999985 7899999999999996 5777764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.36  E-value=0.18  Score=43.99  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=53.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|+++.++|-|. +|+|.++|+.|+..|.. +.++|.                      ...+.+.+++.+++...  ++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~----------------------~~~~~~~~~~~i~~~g~--~~   58 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVEL----------------------LEDRLNQIVQELRGMGK--EV   58 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--cE
Confidence            588999999985 59999999999999975 888775                      23356666777776654  34


Q ss_pred             eeeecCCCCc---------chhhhccCcEEEEe
Q 023036          107 SVEKGDLSSL---------DGEFYDKFDVVVVS  130 (288)
Q Consensus       107 ~~~~~~~~~~---------~~~~~~~~dvVi~~  130 (288)
                      ..+..++.+.         ..+.+...|++|.+
T Consensus        59 ~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNN   91 (254)
T 4fn4_A           59 LGVKADVSKKKDVEEFVRRTFETYSRIDVLCNN   91 (254)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            4445555431         12234567777764

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=94.35  E-value=0.19  Score=44.39  Aligned_cols=36  Identities=3%  Similarity=0.071  Sum_probs=27.1

Q ss_pred             HhcCcEEEEcCchHHHH-HHHHHHH-hCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAE-FCKNIVL-AGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGse-iaknL~l-~Gvg~i~lvD~d   64 (288)
                      |+..+|.|||+|.+|.. .+++|.. .|+.-+.++|.+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   41 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN   41 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            55679999999999996 8898876 455544477763

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.33  E-value=0.3  Score=43.17  Aligned_cols=105  Identities=15%  Similarity=0.138  Sum_probs=61.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ++|+|.| .|.+|+.+++.|+..|. +++++|...-            .      +   .....+.+... +  +++...
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~------------~------~---~~~~~~~l~~~-~--~~~~~~   56 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSR------------K------G---ATDNLHWLSSL-G--NFEFVH   56 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS------------T------T---HHHHHHHHHTT-C--CCEEEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCCc------------c------C---chhhhhhhccC-C--ceEEEE
Confidence            4799999 57899999999999995 5777764110            0      1   11112233321 2  344555


Q ss_pred             cCCCCc--chhhhcc--CcEEEEecCCh---------h--------hHHHHHHHHHhcCCCc--eEEEEeeecceE
Q 023036          111 GDLSSL--DGEFYDK--FDVVVVSCCSV---------T--------TKKLINEKCRKLSKRV--AFYTVDCRDSCG  163 (288)
Q Consensus       111 ~~~~~~--~~~~~~~--~dvVi~~~~~~---------~--------~~~~i~~~~~~~~~~i--p~i~~~~~G~~G  163 (288)
                      .++.+.  ..+.+++  +|+||.+....         .        ....+-+.|++  .++  .+|..++.+.+|
T Consensus        57 ~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~--~~~~~~iv~~SS~~v~g  130 (347)
T 1orr_A           57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQ--YNSNCNIIYSSTNKVYG  130 (347)
T ss_dssp             CCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HCTTCEEEEEEEGGGGT
T ss_pred             cCCCCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCCceEEEeccHHHhC
Confidence            555542  2345566  89998875421         1        12345567766  444  488888776655

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.33  E-value=0.13  Score=43.55  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r   46 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGR   46 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEec
Confidence            577889999995 69999999999999974 777765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.32  E-value=0.36  Score=45.64  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -.+|.|||+|.+|+.+|.+|+.+|. .++++|.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~   68 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVES   68 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            3579999999999999999999997 5899886

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.30  E-value=0.042  Score=51.05  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +++..||+|+|+|..|..+++.|+.+|+++|+++|..-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            67889999999999999999999999999999999864

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.30  E-value=0.33  Score=42.62  Aligned_cols=106  Identities=7%  Similarity=0.053  Sum_probs=62.3

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..+|+|.|+ |.+|+.+++.|...|. ++++++.+.-             ..-   ...+++.+. .+..  +.  ++..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------~~~---~~~~~~~l~-~~~~--~~--v~~v   61 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLT-------------PDS---TPSSVQLRE-EFRS--MG--VTII   61 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCC-------------TTC---CHHHHHHHH-HHHH--TT--CEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcc-------------ccc---ChHHHHHHH-Hhhc--CC--cEEE
Confidence            357999996 8899999999999994 5777764210             000   011222221 1221  22  4455


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCC-ceEEEEeeec
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~-ip~i~~~~~G  160 (288)
                      ..++.+.  ....++++|+||.+...  ......+-+.|++  .+ ++-+....+|
T Consensus        62 ~~D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  115 (321)
T 3c1o_A           62 EGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKA--AGNIKRFLPSDFG  115 (321)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHH--HCCCCEEECSCCS
T ss_pred             EecCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHH--hCCccEEeccccc
Confidence            5565542  24567889999988653  3445566777877  55 5444333333

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=94.28  E-value=0.52  Score=42.65  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             CcEEEEcC-chHHHHHHHHHH-HhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC---ce-
Q 023036           32 SHILVCGM-KGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VR-  105 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~-l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~---v~-  105 (288)
                      .+|+|.|+ |.+|+.+++.|+ ..|. +++++|...-...         ..+.   - ...+.+.+.++++...   -. 
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---------~~~~---~-~~~~~~~~~~~~~~~~~~~~~~   68 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTHG---------KSDH---V-ETRENVARKLQQSDGPKPPWAD   68 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTTT---------CCTT---S-CCHHHHHHHHHHSCSSCCTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCcccc---------cccc---c-chHHHHHHHHHHhhccccccCC
Confidence            47999995 889999999999 9985 6887775321100         0000   0 0122333333444221   12 


Q ss_pred             --eeeeecCCCCcc--hhhhc--c-CcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeec
Q 023036          106 --VSVEKGDLSSLD--GEFYD--K-FDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRD  160 (288)
Q Consensus       106 --v~~~~~~~~~~~--~~~~~--~-~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G  160 (288)
                        +..+..++.+..  .+.++  + +|+||.+....                 .....+-+.|++  .++ .||.+++.+
T Consensus        69 ~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~--~~~~~iv~~SS~~  146 (397)
T 1gy8_A           69 RYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLL--HKCDKIIFSSSAA  146 (397)
T ss_dssp             CCCEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGG
T ss_pred             ceEEEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHH--hCCCEEEEECCHH
Confidence              455555655421  33454  4 89999875321                 112334566776  554 678777776


Q ss_pred             ceE
Q 023036          161 SCG  163 (288)
Q Consensus       161 ~~G  163 (288)
                      .+|
T Consensus       147 v~g  149 (397)
T 1gy8_A          147 IFG  149 (397)
T ss_dssp             GTB
T ss_pred             HhC
Confidence            665

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=94.27  E-value=0.14  Score=44.76  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=32.8

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        23 ~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ......|++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        25 ~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   65 (275)
T 4imr_A           25 LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGV   65 (275)
T ss_dssp             HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            34555688899999985 6899999999999997 4777765

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.25  E-value=0.075  Score=45.95  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +..+++++|+|.|+ ||+|.++++.|+..|.. +.+++
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~~   57 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFN-IGVHY   57 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEe
Confidence            34577888999985 68999999999999976 44433

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.21  E-value=0.11  Score=46.57  Aligned_cols=80  Identities=11%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +.+++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+....+...+.
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   62 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADI----------------------RQDSIDKALATLEAEGSGPEVM   62 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHTCGGGEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCCCeEE
Confidence            56788999995 68999999999999974 777764                      2224455555666555544556


Q ss_pred             eeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          108 VEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      .+..++.+..  ..+       +...|+||.+.
T Consensus        63 ~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nA   95 (319)
T 3ioy_A           63 GVQLDVASREGFKMAADEVEARFGPVSILCNNA   95 (319)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            6655555421  112       23557777654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.19  E-value=0.1  Score=45.60  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..+++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+  +
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~--~   74 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCAR----------------------DAKNVSAAVDGLRAAGH--D   74 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTTC--C
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhcCC--c
Confidence            3567788999985 68999999999999965 777764                      22245555666666554  3


Q ss_pred             eeeeecCCCCcc--h-------hhhccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--G-------EFYDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~-------~~~~~~dvVi~~~  131 (288)
                      +..+..++.+..  .       +.+...|+||.+.
T Consensus        75 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA  109 (279)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            444555554321  1       1234678877753

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=94.17  E-value=0.18  Score=44.01  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|.+++++|.|+ +|+|.++++.|+..|.. +.++|.+.-........-+ ...     ...+.+.+++.+.+.++  ++
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~--~~   78 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAI-PAS-----TPEDLAETADLVKGHNR--RI   78 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSS-CCC-----CHHHHHHHHHHHHTTTC--CE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEecccccccccccccc-ccC-----CHHHHHHHHHHHhhcCC--ce
Confidence            477889999995 58999999999999965 8888764322111111000 000     23355566666666654  45


Q ss_pred             eeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..       .+...|++|.+.
T Consensus        79 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  112 (286)
T 3uve_A           79 VTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANA  112 (286)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55556665421  12       234789988764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.17  E-value=0.44  Score=43.16  Aligned_cols=34  Identities=12%  Similarity=0.118  Sum_probs=28.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +..+|+|.|+ |.+|+.+++.|...|. +++++|..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            3468999997 8899999999999994 68887753

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.14  E-value=0.39  Score=45.31  Aligned_cols=123  Identities=17%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHh---CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLA---GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~---Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v  104 (288)
                      ....+|+|.|+ |.+|+++++.|...   | .++.+++...-....+.+  +  .+..   .....+. .+.+.+.. .-
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~--l--~~~~---~~~~~~~-~~~~~~~~-~~  140 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRR--L--EKTF---DSGDPEL-LRHFKELA-AD  140 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHH--H--HGGG---CSSCHHH-HHHHHHHH-TT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHH--H--HHHH---Hhcchhh-hhhhhhhc-cC
Confidence            35779999995 78999999999998   5 467777652211100000  0  0000   0000000 11111111 12


Q ss_pred             eeeeeecCCCCc--------chhhhccCcEEEEecCC-------------hhhHHHHHHHHHhcCCCc-eEEEEeeecce
Q 023036          105 RVSVEKGDLSSL--------DGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (288)
Q Consensus       105 ~v~~~~~~~~~~--------~~~~~~~~dvVi~~~~~-------------~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~  162 (288)
                      +++.+..++.+.        ....+++.|+||.+...             ......+-+.|++  .++ .||..++.+.+
T Consensus       141 ~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~--~~~~~~V~iSS~~v~  218 (478)
T 4dqv_A          141 RLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALT--TKLKPFTYVSTADVG  218 (478)
T ss_dssp             TEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTS--SSCCCEEEEEEGGGG
T ss_pred             ceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEEeehhhc
Confidence            456666666421        13456789999987532             1223456677876  554 78888886654


Q ss_pred             E
Q 023036          163 G  163 (288)
Q Consensus       163 G  163 (288)
                      |
T Consensus       219 ~  219 (478)
T 4dqv_A          219 A  219 (478)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=94.13  E-value=0.12  Score=49.52  Aligned_cols=29  Identities=14%  Similarity=0.067  Sum_probs=26.9

Q ss_pred             HHHHHhc-CcEEEEcCchHHHHHHHHHHHh
Q 023036           25 AQRRLSK-SHILVCGMKGTVAEFCKNIVLA   53 (288)
Q Consensus        25 ~q~~L~~-~~VlIiG~gglGseiaknL~l~   53 (288)
                      ..+.|++ ++|.|||+|.+|..+|+||..+
T Consensus        47 ~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s   76 (525)
T 3fr7_A           47 LPEAFKGIKQIGVIGWGSQGPAQAQNLRDS   76 (525)
T ss_dssp             HHHHTTTCSEEEEECCTTHHHHHHHHHHHH
T ss_pred             ChHHhcCCCEEEEEeEhHHHHHHHHHHHhc
Confidence            3678889 9999999999999999999999

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=94.12  E-value=0.074  Score=45.72  Aligned_cols=36  Identities=14%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   46 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSR   46 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            357788899998 56899999999999996 5777764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.11  E-value=0.086  Score=45.41  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+.++  ++
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~--~~   63 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDL----------------------KSEGAEAVAAAIRQAGG--KA   63 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEES----------------------SHHHHHHHHHHHHHTTC--CE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhcCC--cE
Confidence            467889999985 68999999999999975 777764                      12244555666666554  34


Q ss_pred             eeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..       .+...|++|.+.
T Consensus        64 ~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           64 IGLECNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            44445554321  11       223678777753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.10  E-value=0.049  Score=47.08  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=52.1

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..+.+++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+  +
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~--~   79 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTAR----------------------DVEKLRAVEREIVAAGG--E   79 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--E
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHhCC--c
Confidence            3567889999984 78999999999999975 777764                      22244555666666554  4


Q ss_pred             eeeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..       .+...|+||.+.
T Consensus        80 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A  114 (262)
T 3rkr_A           80 AESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA  114 (262)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             eeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            455555554421  11       224578887754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.10  E-value=0.11  Score=45.49  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   64 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAAR   64 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999994 68999999999999964 777765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.09  E-value=0.18  Score=47.48  Aligned_cols=36  Identities=11%  Similarity=-0.106  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...-.+|.|||+|.+|..+|..|+. | ..++++|.+.
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G-~~V~~~D~~~   68 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-N-HEVVALDIVQ   68 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-T-SEEEEECSCH
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-C-CeEEEEecCH
Confidence            3455689999999999999999998 8 5699998754

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.07  E-value=0.16  Score=46.80  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHH-hCCCeEEEEc
Q 023036           32 SHILVCGMKGTVAEFCKNIVL-AGVGSLTLMD   62 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD   62 (288)
                      .+|+|||+|.+|+.++..|+. +|. .++++|
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            379999999999999999998 585 588887

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.04  E-value=0.025  Score=51.24  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             hhhhhhhh--ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        13 rYdRqirl--~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .|+|+++-  |.......|.+++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus       120 ~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          120 LYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             HHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            35555443  64333457889999999999999999999999997 488888654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.02  E-value=0.24  Score=43.01  Aligned_cols=81  Identities=16%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC-ce
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-VR  105 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~-v~  105 (288)
                      .|.+++|+|.| .||+|.++++.|+..|.. +.++|.+                      ..+.+.+++.+.+..+. ..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~   64 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRN----------------------PDKLAGAVQELEALGANGGA   64 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC----------------------HHHHHHHHHHHHTTCCSSCE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC----------------------HHHHHHHHHHHHHhCCCCce
Confidence            56788999998 568999999999999974 7777752                      22444555566655432 24


Q ss_pred             eeeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..       .+...|++|.+.
T Consensus        65 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   99 (281)
T 3svt_A           65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCA   99 (281)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555554421  11       223567777654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.02  E-value=0.11  Score=46.04  Aligned_cols=78  Identities=19%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +.+++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+  ++.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~--~~~   83 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDV----------------------DQPALEQAVNGLRGQGF--DAH   83 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--ceE
Confidence            67789999995 68999999999999964 777764                      22244555556655543  344


Q ss_pred             eeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          108 VEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      ....++.+..  .++       +...|+||.+.
T Consensus        84 ~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnA  116 (301)
T 3tjr_A           84 GVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNA  116 (301)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             EEEccCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            4555554421  122       23678888764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.01  E-value=0.088  Score=45.30  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   39 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRR   39 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999985 5899999999999997 4888775

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.01  E-value=0.26  Score=42.67  Aligned_cols=101  Identities=12%  Similarity=-0.007  Sum_probs=59.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ||.|+|+ |.+|..+++.+... |..=+.++|..               +|+           .+.+ ...++|-|+...
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl-----------~~~~-~~~~DvvIDfT~   54 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPL-----------SLLT-DGNTEVVIDFTH   54 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCT-----------HHHH-HTTCCEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCH-----------HHHh-ccCCcEEEEccC
Confidence            7999997 99999999998765 76544566642               233           1111 124555444432


Q ss_pred             cCCC-Ccchh-hhccCcEEEEecC-ChhhHHHHHHHHHhcCC-CceEEEEeeecce
Q 023036          111 GDLS-SLDGE-FYDKFDVVVVSCC-SVTTKKLINEKCRKLSK-RVAFYTVDCRDSC  162 (288)
Q Consensus       111 ~~~~-~~~~~-~~~~~dvVi~~~~-~~~~~~~i~~~~~~~~~-~ip~i~~~~~G~~  162 (288)
                      .... ++... .-.+.++|+.++. +.+....|.++|++  . ++|++.+..++.-
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~--~~~~~vv~a~N~siG  108 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVA--KPNTSVLIAPNFAIG  108 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHT--STTCEEEECSCCCHH
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHh--CCCCCEEEECCccHH
Confidence            2111 01111 1246778887663 44556678888876  5 7888877776543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.99  E-value=0.075  Score=47.51  Aligned_cols=93  Identities=14%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             HHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC
Q 023036           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP  102 (288)
Q Consensus        24 ~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp  102 (288)
                      ..+..|.+++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-.    .+     ...-   ...+.+.+.+.+.+..+
T Consensus        20 ~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~----~~-----~~~~---~~~~~~~~~~~~~~~~~   86 (322)
T 3qlj_A           20 GSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGL----DG-----SPAS---GGSAAQSVVDEITAAGG   86 (322)
T ss_dssp             --CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCT----TS-----SBTC---TTSHHHHHHHHHHHTTC
T ss_pred             chhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccc----cc-----cccc---cHHHHHHHHHHHHhcCC
Confidence            3345678889999985 6899999999999996 58888764211    11     1111   34567777777777654


Q ss_pred             CceeeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          103 MVRVSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       103 ~v~v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                        ++..+..++.+..  ..+       +...|++|.+.
T Consensus        87 --~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA  122 (322)
T 3qlj_A           87 --EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNA  122 (322)
T ss_dssp             --EEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             --cEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence              4555566665421  222       34789988764

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=93.99  E-value=0.46  Score=41.42  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|.|+ |.+|+.+++.|...|. +++++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            37999997 7899999999999996 5777765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.96  E-value=0.11  Score=44.95  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   63 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDI   63 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEc
Confidence            46788999998 56899999999999996 4777764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.91  E-value=0.21  Score=43.57  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r   60 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTAR   60 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            477889999996 6999999999999996 5777765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.90  E-value=0.14  Score=48.23  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +++++|+|+|.|+.|..+|+.|...|.. +++.|..
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~-V~~~D~~   41 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAI-VTVNDGK   41 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCE-EEEEeCC
Confidence            5678999999999999999999999954 9999874

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.89  E-value=0.24  Score=42.69  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+++.++|-|++   |+|.++|+.|+..|. ++.+.|.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r   40 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYR   40 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence            4788999999974   899999999999996 4888875

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.81  E-value=0.087  Score=48.42  Aligned_cols=51  Identities=18%  Similarity=0.102  Sum_probs=39.3

Q ss_pred             hhhhhhhh--ccHHHH----HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           13 LYDRQIRV--WGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        13 rYdRqirl--~G~~~q----~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+++++-  |.....    ..|.+++|.|||+|.+|..+|+.|...|..++..+|.
T Consensus       140 ~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          140 PAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             HHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             HHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            35555553  764322    3589999999999999999999999999765888875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.80  E-value=0.22  Score=43.55  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r   50 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASR   50 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            57788999998 56899999999999996 4777764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.77  E-value=0.22  Score=42.88  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDW   39 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEEC
Confidence            45678999985 6899999999999995 4777764

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=93.77  E-value=0.25  Score=48.89  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+++++|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r   43 (699)
T 1z45_A            7 SESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   43 (699)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            346778999999 58899999999999995 5777764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.76  E-value=0.3  Score=43.83  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             cEEEEc-CchHHHHHHHHHHHh-CC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLA-GV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~-Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +|.|+| +|.+|..++..|... +. .++.|+|-..                       |++..+-.|+.....+++..+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-----------------------~~~G~a~Dl~~~~~~~~v~~~   58 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-----------------------VTPGVAVDLSHIPTAVKIKGF   58 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-----------------------THHHHHHHHHTSCSSEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-----------------------CchhHHHHhhCCCCCceEEEe
Confidence            799999 899999999999886 54 5899998621                       122223444544334455543


Q ss_pred             ecCCCCcchhhhccCcEEEEecC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..   ..+.+.++++|+||.+..
T Consensus        59 ~~---~~~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           59 SG---EDATPALEGADVVLISAG   78 (312)
T ss_dssp             CS---SCCHHHHTTCSEEEECCS
T ss_pred             cC---CCcHHHhCCCCEEEEeCC
Confidence            21   124567899999999864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.76  E-value=0.13  Score=44.46  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   43 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAAR   43 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            477889999995 58999999999999975 777764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.74  E-value=0.11  Score=44.26  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r   39 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGR   39 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECC
Confidence            367788999985 78999999999999964 777765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.72  E-value=0.084  Score=45.47  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   38 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGR   38 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467888999985 68999999999999964 777764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.72  E-value=0.059  Score=46.93  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      .+|++++|+|.|+ ||+|.++++.|+..|.. +.++|...-.    .+.-.    ..  ....+.+.+...+.+.++  +
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~----~~~~~----~~--~~~~~~~~~~~~~~~~~~--~   72 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDI----ETNEY----PL--ATSRDLEEAGLEVEKTGR--K   72 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCC----TTSCS----CC--CCHHHHHHHHHHHHHTTS--C
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccc----ccccc----ch--hhhHHHHHHHHHHHhcCC--c
Confidence            3578899999995 58999999999999965 8888753211    11100    00  023345555666666554  4


Q ss_pred             eeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..+       +...|+||.+.
T Consensus        73 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (287)
T 3pxx_A           73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANA  107 (287)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555665421  122       24789988764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.71  E-value=0.084  Score=46.01  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r   58 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGT   58 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467888999985 6899999999999997 4777654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.71  E-value=0.053  Score=51.17  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCC--CeEEEEc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMD   62 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD   62 (288)
                      .+++.+|+|+|+|+.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4677899999999999999999999999  8999999

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.70  E-value=0.22  Score=47.34  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~   65 (288)
                      .+|.|||+|.+|..+|.+|+..|.| .++++|.+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4899999999999999999999643 689998643

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.69  E-value=0.39  Score=42.87  Aligned_cols=33  Identities=24%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ..+|.|||+|.+|+.++..|+..|. ..+.|+|-
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di   47 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDL   47 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3689999999999999999999996 46999986

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.67  E-value=0.18  Score=45.97  Aligned_cols=32  Identities=9%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|.|||+|.+|..+++.|...|. .++++|.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr   39 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNR   39 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3579999999999999999999994 5888875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.67  E-value=0.31  Score=45.18  Aligned_cols=31  Identities=19%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +|.|||+|.+|..++..|+. | .+++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G-~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q-NEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-C-CEEEEEECCH
Confidence            69999999999999999999 8 5799998643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.66  E-value=0.11  Score=45.13  Aligned_cols=94  Identities=13%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             HHHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036           25 AQRRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (288)
Q Consensus        25 ~q~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~  103 (288)
                      .+..|++++++|.| .||+|.++++.|+..|.. +.++|.+.-... ..    +..  .   ...+.+...+.+.+..+ 
T Consensus         4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~-~~----~~~--~---~~~~~~~~~~~~~~~~~-   71 (281)
T 3s55_A            4 SMADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDV-VG----YPL--A---TADDLAETVALVEKTGR-   71 (281)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTT-CS----SCC--C---CHHHHHHHHHHHHHTTC-
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccc-cc----ccc--c---cHHHHHHHHHHHHhcCC-
Confidence            34568889999998 568999999999999975 888886321100 00    000  0   23344555555666554 


Q ss_pred             ceeeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          104 VRVSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       104 v~v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                       ++.....++.+..  ..+       +...|++|.+.
T Consensus        72 -~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (281)
T 3s55_A           72 -RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA  107 (281)
T ss_dssp             -CEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             -eEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence             4455555555421  222       34789888764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.66  E-value=0.18  Score=44.46  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r   73 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAAR   73 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467788999885 6899999999999997 5888875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.66  E-value=0.48  Score=45.11  Aligned_cols=33  Identities=18%  Similarity=0.101  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -.+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999997 48998863

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.65  E-value=0.17  Score=43.16  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r   39 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAAR   39 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            36678899998 46899999999999996 4777764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.60  E-value=0.17  Score=44.34  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -.+.++.|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGV-TVGALGR   60 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3577889999985 6899999999999997 5777775

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.60  E-value=0.17  Score=43.49  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVAR   39 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            56788999985 6899999999999996 5777764

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=93.58  E-value=0.38  Score=43.42  Aligned_cols=34  Identities=9%  Similarity=0.037  Sum_probs=27.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d   64 (288)
                      ..+|.|||+|.+|...++.|...  |+.-+.++|.+
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~   48 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDID   48 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            45899999999999999999987  55544577753

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.57  E-value=0.2  Score=43.52  Aligned_cols=35  Identities=11%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASR   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            578899999995 5899999999999997 5888765

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=93.57  E-value=0.78  Score=40.43  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=61.2

Q ss_pred             cEEEEc-CchHHHHHHHHHHHh---CC--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLA---GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~---Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|+|.| .|.+|+.+++.|...   |+  .+++++|...-.                  +..      +.+.++...-.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~------------------~~~------~~~~~~~~~~~~   57 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA------------------GNR------ANLAPVDADPRL   57 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT------------------CCG------GGGGGGTTCTTE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc------------------Cch------hhhhhcccCCCe
Confidence            699998 588999999999996   63  468887753210                  000      001111111234


Q ss_pred             eeeecCCCCc--chhhhccCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      .....++.+.  ..+.+.++|+||.+....                 .....+-+.|++  .++ .+|..++.+.+|
T Consensus        58 ~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~--~~~~~~v~~SS~~vyg  132 (337)
T 1r6d_A           58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD--AGVGRVVHVSTNQVYG  132 (337)
T ss_dssp             EEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--TTCCEEEEEEEGGGGC
T ss_pred             EEEEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecchHHhC
Confidence            4455555442  134557889988875321                 112345567777  555 788888776665

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.55  E-value=0.12  Score=44.26  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   39 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDL   39 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            35678899998 56899999999999996 5888765

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.51  E-value=0.24  Score=43.02  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=57.6

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..|++++|+|.|+ ||+|.++++.|+..|.. +.++|...-....+.    +...     ...+.+.+++.+.+..+  +
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~--~   78 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVT----YAPA-----SPEDLDETARLVEDQGR--K   78 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCC----SCCC-----CHHHHHHHHHHHHTTTC--C
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecccccccccc----cccc-----CHHHHHHHHHHHHhcCC--e
Confidence            3578899999985 68999999999999974 888876332111111    1111     23455666677776654  4


Q ss_pred             eeeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..       .+...|++|.+.
T Consensus        79 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  113 (280)
T 3pgx_A           79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANA  113 (280)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            455555555421  12       234789888764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.51  E-value=0.5  Score=41.70  Aligned_cols=31  Identities=23%  Similarity=0.164  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|.|+ |.+|+.+++.|...| .+++++|.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   45 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHR   45 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec
Confidence            37999995 889999999999999 46888775

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.47  E-value=0.085  Score=44.86  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r   37 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTAT   37 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999985 68999999999999964 777664

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=93.44  E-value=0.34  Score=41.22  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=27.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            69999999999999999998887544788875

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.43  E-value=0.24  Score=43.27  Aligned_cols=81  Identities=15%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..+.+++++|.|+ ||+|.++++.|+..|.. +.++|..                     ...+.+.+++.+.+..+  +
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~---------------------~~~~~~~~~~~~~~~~~--~   80 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIG---------------------DAEGVAPVIAELSGLGA--R   80 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC---------------------CHHHHHHHHHHHHHTTC--C
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCC---------------------CHHHHHHHHHHHHhcCC--c
Confidence            3567788999985 68999999999999974 7777631                     11244455555655554  3


Q ss_pred             eeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..+       +...|++|.+.
T Consensus        81 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  115 (280)
T 4da9_A           81 VIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA  115 (280)
T ss_dssp             EEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            444555554321  222       23678877664

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=93.41  E-value=0.17  Score=42.70  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=27.4

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCC------eEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVG------SLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg------~i~lvD~   63 (288)
                      +++|+|.| .|++|.++++.|+..|..      ++.++|.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r   41 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR   41 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC
Confidence            45789998 568999999999999985      6777764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.41  E-value=0.17  Score=43.82  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   52 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGR   52 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467888999985 68999999999999975 777765

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=93.39  E-value=0.2  Score=43.08  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   44 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADL   44 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 45899999999999996 5777765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.39  E-value=0.71  Score=43.47  Aligned_cols=42  Identities=12%  Similarity=-0.051  Sum_probs=33.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~   72 (288)
                      .+-+|.|||+|.+|..+|.+|+..|. .++++|-+.-..+.++
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~   48 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLH   48 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHh
Confidence            46789999999999999999999995 5899987654444443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.37  E-value=0.16  Score=43.58  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=28.3

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   46 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   46 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 56899999999999996 5777764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.35  E-value=0.21  Score=43.43  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   54 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCAR   54 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36778899998 56899999999999996 4777764

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.33  E-value=0.11  Score=45.20  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   36 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGAR   36 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEEC
Confidence            45678899885 68999999999999965 777764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=93.33  E-value=0.51  Score=41.01  Aligned_cols=101  Identities=13%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +++|+|.|+ |.+|..+++.|...|-.++++++.+.                    .+.++    +.+..  +.  ++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~--------------------~~~~~----~~l~~--~~--~~~~   56 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNP--------------------RKKAA----KELRL--QG--AEVV   56 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCT--------------------TSHHH----HHHHH--TT--CEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCC--------------------CCHHH----HHHHH--CC--CEEE
Confidence            468999997 88999999999999844577765421                    11111    12222  22  3444


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCCh---------hhHHHHHHHHHhcCCCc-eEEEEeeecc
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCSV---------TTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~~---------~~~~~i~~~~~~~~~~i-p~i~~~~~G~  161 (288)
                      ..++.+.  ....+++.|+||.+....         .....+-+.|++  .++ .+|..++.+.
T Consensus        57 ~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~--~gv~~iv~~S~~~~  118 (299)
T 2wm3_A           57 QGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARR--LGLHYVVYSGLENI  118 (299)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHH--HTCSEEEECCCCCH
T ss_pred             EecCCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHH--cCCCEEEEEcCccc
Confidence            5555542  245677899999875421         122345566666  444 4565555443

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.30  E-value=0.22  Score=42.02  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            5678899998 46899999999999996 577774

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.28  E-value=0.083  Score=46.76  Aligned_cols=35  Identities=9%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|+|+|+|.+|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr  186 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGAR  186 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            4788999999999999999999999998 7999886

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.27  E-value=0.18  Score=43.42  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDM   39 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467788999985 68999999999999964 777764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=93.26  E-value=0.51  Score=42.76  Aligned_cols=37  Identities=11%  Similarity=0.102  Sum_probs=27.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHH-H-hCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~-l-~Gvg~i~lvD~d   64 (288)
                      .++..+|.|||+|.+|...+++|. . .|+.-+.++|.+
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~   58 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV   58 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence            455678999999999999999998 4 455544567753

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=93.25  E-value=0.18  Score=45.75  Aligned_cols=38  Identities=8%  Similarity=-0.038  Sum_probs=27.2

Q ss_pred             HHHhcCcEEEEcCchHHH-HHHHHHHHh-CCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVA-EFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGs-eiaknL~l~-Gvg~i~lvD~d   64 (288)
                      ..++..+|.|||+|.+|. ..+++|... |+.-+.++|.+
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            346667999999999998 789999876 54433466753

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=93.19  E-value=0.057  Score=49.29  Aligned_cols=37  Identities=8%  Similarity=0.067  Sum_probs=32.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~  180 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVA  180 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            35889999999999999999999999997 48888874

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=93.13  E-value=0.54  Score=41.79  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=26.8

Q ss_pred             cEEEEcCchHHHHH-HHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEF-CKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGsei-aknL~l~Gvg~i~lvD~d~   65 (288)
                      +|.|||+|.+|... ++.|...|+.-+.++|.+.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~   35 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSA   35 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCH
Confidence            69999999999998 8888886765556778643

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=93.12  E-value=0.35  Score=42.31  Aligned_cols=30  Identities=17%  Similarity=0.219  Sum_probs=23.8

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|.|+ |.+|+.+++.|...|  .+.+++.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~   32 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDN   32 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEc
Confidence            37999995 789999999999999  4555543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.12  E-value=0.2  Score=43.16  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +|++++|+|.|+ ||+|.++++.|+..|.. +.+++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~   39 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTY   39 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            577889999995 58999999999999975 66653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=93.11  E-value=0.38  Score=42.34  Aligned_cols=31  Identities=29%  Similarity=0.520  Sum_probs=26.1

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|+|.| .|.+|+.+++.|...|. +++++|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDN   33 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            4799998 58899999999999994 5777764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=93.11  E-value=0.31  Score=41.53  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r   44 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDL   44 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678999998 56899999999999996 4777765

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.08  E-value=0.11  Score=45.59  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r   40 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTAR   40 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467888999985 68999999999999975 777764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.07  E-value=0.32  Score=41.80  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            467889999984 6899999999999996 5777764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.07  E-value=0.035  Score=49.96  Aligned_cols=36  Identities=14%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            35889999999999999999999999996 4777775

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.07  E-value=0.32  Score=42.59  Aligned_cols=32  Identities=13%  Similarity=-0.078  Sum_probs=27.1

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|.|+ |.+|+.+++.|...| .+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999997 889999999999999 56888774

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.05  E-value=0.23  Score=42.97  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGR   38 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            466788999884 6899999999999996 5777764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=93.04  E-value=0.19  Score=44.18  Aligned_cols=96  Identities=14%  Similarity=0.107  Sum_probs=55.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHH-hCCCeEEEEcCCcC--CcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVV--TEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l-~Gvg~i~lvD~d~v--~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +.||.|+|+ |.+|..+++.+.. .|+.=+-++|.+.-  ...|++..       .   |..+              ..+
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~-------~---g~~~--------------~~v   60 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-------A---GAGK--------------TGV   60 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCS-------S---SSSC--------------CSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHH-------c---CCCc--------------CCc
Confidence            458999999 9999999999874 44322225564211  11111110       0   1100              012


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      ... .++    .+.+.++|+||+++ +++....+-..|.+  ++++++...+
T Consensus        61 ~~~-~dl----~~~l~~~DvVIDft-~p~~~~~~~~~a~~--~G~~vVigTt  104 (273)
T 1dih_A           61 TVQ-SSL----DAVKDDFDVFIDFT-RPEGTLNHLAFCRQ--HGKGMVIGTT  104 (273)
T ss_dssp             CEE-SCS----TTTTTSCSEEEECS-CHHHHHHHHHHHHH--TTCEEEECCC
T ss_pred             eec-CCH----HHHhcCCCEEEEcC-ChHHHHHHHHHHHh--CCCCEEEECC
Confidence            211 122    23456789999877 45566777888988  9999775444

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=93.01  E-value=0.45  Score=42.69  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=25.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   37 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADP   37 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECC
Confidence            4899999999999999999875 4443346665

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.00  E-value=0.095  Score=46.53  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+..++|+|+|+|.+|..+++.|...|. +++++|.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~  188 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGAR  188 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4788999999999999999999999997 7999886

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=93.00  E-value=0.37  Score=42.83  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=55.7

Q ss_pred             HHHHHHhc-CcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           24 DAQRRLSK-SHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        24 ~~q~~L~~-~~VlIiG-~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      ++|..|.. -||.|+| +|.+|..+++.+... ++.=+-++|...-   +      ....|+   |.         +..+
T Consensus        13 ~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~---ge---------l~G~   71 (288)
T 3ijp_A           13 EAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDA---SI---------LIGS   71 (288)
T ss_dssp             --------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBG---GG---------GTTC
T ss_pred             hhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccch---HH---------hhcc
Confidence            44544433 5899999 899999999988743 4333334454211   0      011122   21         1111


Q ss_pred             CCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .+ ..+.+.     +..++.+.++|+||+.+ +++.....-.+|.+  +++|++. ++.|
T Consensus        72 ~~-~gv~v~-----~dl~~ll~~aDVvIDFT-~p~a~~~~~~~~l~--~Gv~vVi-GTTG  121 (288)
T 3ijp_A           72 DF-LGVRIT-----DDPESAFSNTEGILDFS-QPQASVLYANYAAQ--KSLIHII-GTTG  121 (288)
T ss_dssp             SC-CSCBCB-----SCHHHHTTSCSEEEECS-CHHHHHHHHHHHHH--HTCEEEE-CCCC
T ss_pred             Cc-CCceee-----CCHHHHhcCCCEEEEcC-CHHHHHHHHHHHHH--cCCCEEE-ECCC
Confidence            11 112211     12345667899999887 44555566678888  8999885 4445

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.99  E-value=0.23  Score=42.59  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   41 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSR   41 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999984 6899999999999996 4777764

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.97  E-value=0.33  Score=42.19  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r   61 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICAR   61 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            67788999985 6899999999999996 4888775

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=92.97  E-value=0.87  Score=40.07  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +|+|.|+ |.+|+.+++.|... |. +++++|...-   .+.        .+               .+ .+  .++.+.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~--------~~---------------~~-~~--~~~~~~   51 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AIS--------RF---------------LN-HP--HFHFVE   51 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCG---GGG--------GG---------------TT-CT--TEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcc---hHH--------Hh---------------hc-CC--CeEEEe
Confidence            6999997 78999999999998 64 5777765221   100        00               00 11  244444


Q ss_pred             cCCCCc---chhhhccCcEEEEecC--Ch-------h--------hHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          111 GDLSSL---DGEFYDKFDVVVVSCC--SV-------T--------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       111 ~~~~~~---~~~~~~~~dvVi~~~~--~~-------~--------~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      .++.+.   ....++++|+||.+..  ..       .        ....+-+.|++  .+..+|..++.+.+|
T Consensus        52 ~D~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~v~~SS~~v~g  122 (345)
T 2bll_A           52 GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVK--YRKRIIFPSTSEVYG  122 (345)
T ss_dssp             CCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH--TTCEEEEECCGGGGB
T ss_pred             ccccCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEecHHHcC
Confidence            555431   2345667898887632  11       1        12345567777  557888888877665

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=92.97  E-value=0.56  Score=42.11  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             CcEEEEcCchHHHHHHHHHH-H-hCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~-l-~Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|...+++|. . .|+.-+.++|.+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~   37 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN   37 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCC
Confidence            47999999999999999998 4 455444466653

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.95  E-value=0.22  Score=45.91  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3568999999999999999999999988888875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.93  E-value=0.22  Score=42.62  Aligned_cols=64  Identities=14%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHH---hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVL---AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l---~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v  104 (288)
                      |++++++|.| .||+|.++++.|+.   .|. ++.++|.                      ...+.+.+.+.+.+.+|..
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r----------------------~~~~~~~~~~~l~~~~~~~   60 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSAR----------------------SESMLRQLKEELGAQQPDL   60 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTS
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeC----------------------CHHHHHHHHHHHHhhCCCC
Confidence            5677888888 56899999999999   886 5777764                      1224455566666665555


Q ss_pred             eeeeeecCCCC
Q 023036          105 RVSVEKGDLSS  115 (288)
Q Consensus       105 ~v~~~~~~~~~  115 (288)
                      ++..+..++.+
T Consensus        61 ~~~~~~~Dv~~   71 (259)
T 1oaa_A           61 KVVLAAADLGT   71 (259)
T ss_dssp             EEEEEECCTTS
T ss_pred             eEEEEecCCCC
Confidence            66666666654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.92  E-value=0.29  Score=41.76  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578899999985 68999999999999974 777765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.91  E-value=0.21  Score=42.82  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   44 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGR   44 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            578889999985 6899999999999997 4888775

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=92.90  E-value=0.14  Score=44.12  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=27.7

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~   36 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLS   36 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecC
Confidence            346799999 67899999999999995 57777753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.87  E-value=0.37  Score=41.41  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDI   39 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6678899998 56899999999999996 4777764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=92.84  E-value=0.097  Score=47.38  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.||+|||+|..|..+|-.|++.|+. ++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEecC
Confidence            46899999999999999999999985 9999854

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.84  E-value=0.14  Score=44.46  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             ccHHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|...+..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3444445688899999984 6899999999999996 4777764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.80  E-value=0.33  Score=41.62  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   40 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADI   40 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            567889999995 68999999999999974 778775

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=92.78  E-value=0.22  Score=46.18  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=60.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-------eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh--C--
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVG-------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--N--  101 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg-------~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l--N--  101 (288)
                      ||.|+|+|+-|+.+|+.|+..|-+       .++++-.+               .++.  ++.-    .+.+++.  |  
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~---------------~e~~--~~~~----~e~in~~~~N~~   94 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFE---------------EEIN--GEKL----TEIINTRHQNVK   94 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCC---------------CBSS--SCBH----HHHHTTTCCBTT
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcc---------------hHhh--hHHH----HHHHHhcCcCcc
Confidence            899999999999999999998732       36665331               1110  1111    2222221  1  


Q ss_pred             --CCceeeeeecCC--CCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          102 --PMVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       102 --p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                        |.+++.   ..+  .....+.+++.|+||.+.-+...+..+.++...++.+.++|.+ +-|+
T Consensus        95 YLpgv~Lp---~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~-~KGi  154 (391)
T 4fgw_A           95 YLPGITLP---DNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC-LKGF  154 (391)
T ss_dssp             TBTTCCCC---SSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC-CCSC
T ss_pred             cCCCCcCC---CCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEe-cccc
Confidence              222211   111  1113566889999999998877776666665433456666643 4554

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.78  E-value=0.43  Score=41.59  Aligned_cols=36  Identities=14%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3577889999985 6899999999999997 5777764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.77  E-value=0.17  Score=43.27  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHH-hCCCeEEEEcC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVL-AGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l-~Gvg~i~lvD~   63 (288)
                      ++++|+|.| .|++|.++++.|+. .|. ++.+++.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r   37 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTAR   37 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeC
Confidence            457789988 56899999999999 896 5777764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.76  E-value=0.3  Score=41.77  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=26.5

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   34 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADY   34 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46789998 56899999999999996 5777764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=92.75  E-value=0.39  Score=41.21  Aligned_cols=96  Identities=7%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh--CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~--Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +|+|.|+ |.+|+.+++.|...  |. ++++++.+.-              ..        +.    +..  +  .++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~--------------~~--------~~----~~~--~--~~~~~   49 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA--------------KA--------QA----LAA--Q--GITVR   49 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT--------------TC--------HH----HHH--T--TCEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH--------------hh--------hh----hhc--C--CCeEE
Confidence            5899996 88999999999988  74 5777764210              00        00    111  1  23344


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCC-----hhhHHHHHHHHHhcCCCc-eEEEEeeecc
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~-----~~~~~~i~~~~~~~~~~i-p~i~~~~~G~  161 (288)
                      ..++.+.  ..+.++++|+||.+...     ......+-+.|++  .++ .+|..++.+.
T Consensus        50 ~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~--~~~~~~v~~Ss~~~  107 (286)
T 2zcu_A           50 QADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKA--AGVKFIAYTSLLHA  107 (286)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHH--HTCCEEEEEEETTT
T ss_pred             EcCCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHH--cCCCEEEEECCCCC
Confidence            4444432  23456778888876432     2334456667766  444 5666666554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.71  E-value=0.4  Score=41.34  Aligned_cols=30  Identities=7%  Similarity=0.153  Sum_probs=26.3

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.|+ |.+|+.+++.|...|. +++.++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            7999995 8899999999999985 5888776

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.66  E-value=0.23  Score=41.98  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=26.8

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r   34 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDL   34 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467899985 6899999999999995 5888764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.64  E-value=0.26  Score=42.78  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|..                     ...+.+.+.+.+++..+  ++
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~---------------------~~~~~~~~~~~l~~~~~--~~   83 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVN---------------------AAERAQAVVSEIEQAGG--RA   83 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--CE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC---------------------CHHHHHHHHHHHHhcCC--cE
Confidence            367788999995 68999999999999975 6666531                     12245555666666554  34


Q ss_pred             eeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      .....++.+..  ..+       +...|++|.+.
T Consensus        84 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            44445554321  122       23678887753

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=92.63  E-value=0.76  Score=38.47  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=55.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..++++|+|+|+-|.+++..|...|..-+.++|++.-.. .+.             |                 +.+-..
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~~-~~~-------------g-----------------~~Vlg~   59 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTRR-AVL-------------G-----------------VPVVGD   59 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----CBT-------------T-----------------BCEEES
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCcccC-cCC-------------C-----------------eeEECC
Confidence            446899999999999999999988888888888753211 000             1                 112111


Q ss_pred             ecCCCCcchhhhc-cCcEEEEecCChhhHHHHHHHHHhcCCCceE
Q 023036          110 KGDLSSLDGEFYD-KFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (288)
Q Consensus       110 ~~~~~~~~~~~~~-~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~  153 (288)
                      ..    ...++.+ ..+.++.+..+...+.++.+.+..  .+..+
T Consensus        60 ~~----~~~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~--~g~~~   98 (220)
T 4ea9_A           60 DL----ALPMLREQGLSRLFVAIGDNRLRQKLGRKARD--HGFSL   98 (220)
T ss_dssp             GG----GHHHHHHTTCCEEEECCCCHHHHHHHHHHHHH--TTCEE
T ss_pred             HH----HHHHhhcccccEEEEecCCHHHHHHHHHHHHh--cCCCc
Confidence            11    1112222 234567777788889999999988  65544

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=92.61  E-value=0.34  Score=44.68  Aligned_cols=111  Identities=11%  Similarity=0.050  Sum_probs=64.0

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC-------C
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-------M  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp-------~  103 (288)
                      .+|+|.|+ |++|+++++.|...|. ++++++...-                   .....+.+.+.+.+..+       .
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------------~~~~~~~l~~~l~~~~~~~~~~~~~  129 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN-------------------EEIAWYKLMTNLNDYFSEETVEMML  129 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS-------------------HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC-------------------hHHHHHHHHHHHHHhcccccccccc
Confidence            48999996 7899999999977774 4666553110                   11122223333333221       1


Q ss_pred             ceeeeeecCCCC-cchhhhccCcEEEEecCCh--------------hhHHHHHHHHHhcCCCceEEEEeeecceEEE
Q 023036          104 VRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--------------TTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (288)
Q Consensus       104 v~v~~~~~~~~~-~~~~~~~~~dvVi~~~~~~--------------~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v  165 (288)
                      ..+..+..++.+ .....+.++|+||.+....              .....+-+.|.+  ....||..++.+. |..
T Consensus       130 ~~v~~v~~Dl~d~~~l~~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~  203 (427)
T 4f6c_A          130 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTY  203 (427)
T ss_dssp             TTEEEEEECC---CCCCCSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSE
T ss_pred             CceEEEeCCCCCcccCCCcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCC
Confidence            244555555543 1111567899999875321              112456667777  6778888888776 543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.60  E-value=0.27  Score=42.63  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   53 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   53 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            67788999985 6899999999999996 4777765

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.60  E-value=0.062  Score=48.86  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~  196 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDP  196 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            35889999999999999999999998885 4777775

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.57  E-value=0.14  Score=41.06  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+|+|||.|..|.++|..|...|. +++|+|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            369999999999999999999997 599999754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=92.57  E-value=0.88  Score=37.97  Aligned_cols=34  Identities=15%  Similarity=-0.024  Sum_probs=27.2

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhC-CCeEEEEcC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAG-VGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~G-vg~i~lvD~   63 (288)
                      ..++|+|.| .|++|.++++.|+..| -.++++++.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            457899999 5889999999999995 245777765

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.53  E-value=0.36  Score=41.88  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGR   38 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678899988 56899999999999996 4777765

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=92.50  E-value=0.37  Score=43.11  Aligned_cols=35  Identities=11%  Similarity=0.084  Sum_probs=26.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      +..+|.|||+|.+|...++.|... |+.-+.++|.+
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   39 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRR   39 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSS
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence            346899999999999999999885 44433466654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=92.48  E-value=0.83  Score=40.41  Aligned_cols=106  Identities=20%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+|+|.| .|.+|+.+++.|+..|- .+++++|...-.                  +..      +.+.++.+ -.++.+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~------------------~~~------~~~~~~~~-~~~~~~   59 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA------------------GNK------ANLEAILG-DRVELV   59 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT------------------CCG------GGTGGGCS-SSEEEE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCC------------------CCh------hHHhhhcc-CCeEEE
Confidence            5799999 58899999999999943 367777753210                  000      01111211 134555


Q ss_pred             ecCCCCc--chhhhccCcEEEEecCChh-----------------hHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          110 KGDLSSL--DGEFYDKFDVVVVSCCSVT-----------------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       110 ~~~~~~~--~~~~~~~~dvVi~~~~~~~-----------------~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      ..++.+.  ..+.++++|+||.+.....                 ....+-+.|++  .++.+|..++.+.+|.
T Consensus        60 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~--~~~~~v~~SS~~vyg~  131 (348)
T 1oc2_A           60 VGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK--YDIRFHHVSTDEVYGD  131 (348)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--HTCEEEEEEEGGGGCC
T ss_pred             ECCCCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHH--hCCeEEEecccceeCC
Confidence            5555542  2456778899988754211                 12345567776  5568888888776663

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.47  E-value=0.37  Score=41.77  Aligned_cols=92  Identities=13%  Similarity=0.180  Sum_probs=56.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|.+++++|.|+ +|+|.++++.|+..|.. +.++|...-.++...+    ...     ...+.+...+.+.+.++  ++
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~--~~   75 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPY----DPA-----SPDDLSETVRLVEAANR--RI   75 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCS----CCC-----CHHHHHHHHHHHHHTTC--CE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccc----ccc-----CHHHHHHHHHHHHhcCC--eE
Confidence            578889999995 68999999999999974 8888763221111111    111     23355566666666655  44


Q ss_pred             eeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      .....++.+..  ..       .+...|++|.+.
T Consensus        76 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           76 VAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55555555421  11       234689888764

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.42  E-value=0.41  Score=42.22  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=27.0

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+-.+.+|||.|+ |.+|+.+++.|...|. +++++|.
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   46 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVA   46 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            3456889999995 7899999999999995 6877775

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.40  E-value=0.16  Score=50.39  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||.|..|.+.|..|++.|. +++|+|..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~  423 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAG  423 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            35689999999999999999999996 49999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.40  E-value=0.12  Score=46.69  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|...+..+...|.+++..+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  199 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGS  199 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            3678999999999999999999999988888875

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=92.37  E-value=0.41  Score=41.38  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   44 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLP   44 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567889999995 6899999999999996 48888753

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=92.36  E-value=0.24  Score=41.94  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r   38 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            46778899998 568999999999999964 777764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.36  E-value=0.17  Score=43.73  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   66 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYN   66 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6778899998 56899999999999996 4777764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.36  E-value=0.24  Score=41.78  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   39 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGT   39 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677899998 56899999999999995 5777764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.35  E-value=0.23  Score=43.46  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r   58 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   58 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            477889999985 6899999999999996 4777764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=92.34  E-value=0.55  Score=44.61  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             hcCcEEEEcCchH-HHHHHHHHHHh--CC--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHH----HHHhhh
Q 023036           30 SKSHILVCGMKGT-VAEFCKNIVLA--GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCC----DSLKDF  100 (288)
Q Consensus        30 ~~~~VlIiG~ggl-GseiaknL~l~--Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~----~~l~~l  100 (288)
                      ++.+|.|||+|++ |..++..|+..  +.  .+++|+|-+.                      .|++...    ..+...
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~----------------------e~~~~~~~~~~~~l~~~   84 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK----------------------ERQDRIAGACDVFIREK   84 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH----------------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH----------------------HHHHHHHHHHHHHhccC
Confidence            4569999999998 66788888887  65  5699998621                      1222222    122334


Q ss_pred             CCCceeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ....++....    + -.+.+++.|+||.+...
T Consensus        85 ~~~~~I~~t~----D-~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           85 APDIEFAATT----D-PEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             CTTSEEEEES----C-HHHHHSSCSEEEECCCT
T ss_pred             CCCCEEEEEC----C-HHHHHcCCCEEEEcCCC
Confidence            4445555532    1 23567899999998754

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=92.33  E-value=0.36  Score=42.00  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +..+.+++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   60 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGR   60 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            44677888899885 68999999999999974 778775

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.30  E-value=0.14  Score=45.19  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.+|..|+.+|. .++++|.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~   46 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQ   46 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            579999999999999999999996 6899886

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.30  E-value=0.38  Score=41.16  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=26.5

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +++++|.| .||+|.++++.|+..|.. +.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADL   34 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            46789988 568999999999999964 777764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.29  E-value=0.19  Score=43.52  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r   61 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYR   61 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467788999985 68999999999999975 666654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=92.29  E-value=0.14  Score=44.86  Aligned_cols=37  Identities=11%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             HHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        26 q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...|.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        11 ~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   48 (291)
T 3rd5_A           11 LPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVR   48 (291)
T ss_dssp             CCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            34577889999985 6899999999999996 5888775

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.26  E-value=0.44  Score=40.68  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r   41 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDR   41 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            467889999995 58999999999999965 888775

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=92.25  E-value=0.6  Score=42.07  Aligned_cols=34  Identities=6%  Similarity=-0.013  Sum_probs=26.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      ..+|.|||+|.+|...+++|... |+.-+.++|.+
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~   39 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT   39 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            45899999999999999999876 55544567764

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.24  E-value=1.1  Score=42.57  Aligned_cols=32  Identities=6%  Similarity=0.037  Sum_probs=27.2

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R  179 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVR  179 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            45899999 57899999999999996 5777765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.21  E-value=0.59  Score=40.00  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|++   |+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r   41 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYA   41 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecC
Confidence            567899999964   4999999999999975 777764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.20  E-value=0.3  Score=42.25  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   53 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   53 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            356778899998 56899999999999996 4777764

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=92.20  E-value=0.91  Score=42.41  Aligned_cols=37  Identities=14%  Similarity=0.053  Sum_probs=25.9

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~   63 (288)
                      ..++.-+|.|||+|.+|...+++|... |+.-+.++|.
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~   53 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP   53 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            445667999999999999999988764 4443345564

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.14  E-value=0.41  Score=41.46  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+|.|+ |.+|+.+++.|. .| .+++.+|..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~   32 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVH   32 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTT
T ss_pred             eEEEECCCCHHHHHHHHHhh-cC-CeEEEeccc
Confidence            6999996 889999999999 78 568887764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.12  E-value=0.36  Score=40.50  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGAR   34 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467899985 68999999999999965 777664

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=92.11  E-value=0.99  Score=42.96  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=46.8

Q ss_pred             hcCcEEEEcCchH--HHHHHHHHHHh-C--CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHH----Hhhh
Q 023036           30 SKSHILVCGMKGT--VAEFCKNIVLA-G--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS----LKDF  100 (288)
Q Consensus        30 ~~~~VlIiG~ggl--GseiaknL~l~-G--vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~----l~~l  100 (288)
                      +..+|.|||+|++  |+.++..|+.. +  ...++|+|-+.                      .|++.+...    +...
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~----------------------e~l~~~~~~~~~~l~~~   59 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE----------------------ERLDAILTIAKKYVEEV   59 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH----------------------HHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH----------------------HHHHHHHHHHHHHhccC
Confidence            3568999999996  67778888743 3  46899999621                      122222222    2223


Q ss_pred             CCCceeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ....++....    + -.+.++++|+||.+...
T Consensus        60 ~~~~~I~~tt----D-~~eal~dAD~VIiaagv   87 (480)
T 1obb_A           60 GADLKFEKTM----N-LDDVIIDADFVINTAMV   87 (480)
T ss_dssp             TCCCEEEEES----C-HHHHHTTCSEEEECCCT
T ss_pred             CCCcEEEEEC----C-HHHHhCCCCEEEECCCc
Confidence            3334454431    1 13567899999998743

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.11  E-value=0.37  Score=43.52  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++......|...+..+|.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3678999999999999999999999988888875

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.11  E-value=0.67  Score=40.27  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHh--CCCeEEEEcC
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~--Gvg~i~lvD~   63 (288)
                      +.+|+|.|+ |.+|+.+++.|...  |. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   36 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE-NVIASDI   36 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG-GEEEEES
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC-EEEEEcC
Confidence            468999997 78999999999998  64 5777764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.10  E-value=0.066  Score=49.05  Aligned_cols=36  Identities=11%  Similarity=0.020  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~  191 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGR  191 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECC
Confidence            46889999999999999999999999996 4777775

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=92.08  E-value=0.45  Score=41.27  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=26.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.|+ |.+|+.+++.|...|...+++++.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   32 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEcc
Confidence            5899997 789999999999999666888775

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=92.07  E-value=0.53  Score=39.92  Aligned_cols=87  Identities=10%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             cCcEEEEcCchHHHHHHHH--HHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           31 KSHILVCGMKGTVAEFCKN--IVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~gglGseiakn--L~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ..+|+|+|+|.+|..+++.  ....|+.=+.++|.+.-.              +   |+.           +. .+.|..
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k--------------~---g~~-----------i~-gv~V~~  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESK--------------I---GTE-----------VG-GVPVYN  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTT--------------T---TCE-----------ET-TEEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHH--------------H---HhH-----------hc-CCeeec
Confidence            3689999999999999994  345677777788864321              1   210           00 122322


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .     +..+++++..|+|+.|..+... ..+.+.|.+  .++.-|
T Consensus       136 ~-----~dl~eli~~~D~ViIAvPs~~~-~ei~~~l~~--aGi~~I  173 (215)
T 2vt3_A          136 L-----DDLEQHVKDESVAILTVPAVAA-QSITDRLVA--LGIKGI  173 (215)
T ss_dssp             G-----GGHHHHCSSCCEEEECSCHHHH-HHHHHHHHH--TTCCEE
T ss_pred             h-----hhHHHHHHhCCEEEEecCchhH-HHHHHHHHH--cCCCEE
Confidence            1     1134555555999998865443 467777877  666644

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.06  E-value=0.51  Score=40.78  Aligned_cols=92  Identities=13%  Similarity=0.218  Sum_probs=57.2

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..|.+++|+|.|+ ||+|.++++.|+..|.. +.++|.+.-. ....    ....     ...+.+...+.+.+..+  +
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~~----~~~~-----~~~~~~~~~~~~~~~~~--~   75 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQI-ASVP----YPLA-----TPEELAATVKLVEDIGS--R   75 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC-TTCS----SCCC-----CHHHHHHHHHHHHHHTC--C
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeccccc-cccc----cccc-----chHHHHHHHHHHHhcCC--e
Confidence            3578899999985 68999999999999966 7787753110 0000    0000     23355566666666665  4


Q ss_pred             eeeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          106 VSVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       106 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      +..+..++.+..  ..+       +...|++|.+.
T Consensus        76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555666665421  222       34789998864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.01  E-value=0.37  Score=42.06  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |++++++|.|+ +|+|.++++.|+..|. ++.++|.+.-....+               +.+.+.+.+.+.+..+  ++.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~   68 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKL---------------PGTIYTAAKEIEEAGG--QAL   68 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS---------------CCCHHHHHHHHHHHTS--EEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhh---------------hHHHHHHHHHHHhcCC--cEE
Confidence            67889999995 6899999999999997 588887643221111               1134455566666654  455


Q ss_pred             eeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          108 VEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      .+..++.+..  ..+       +...|++|.+.
T Consensus        69 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  101 (285)
T 3sc4_A           69 PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA  101 (285)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            5555655421  122       34788888764

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=92.00  E-value=0.33  Score=46.68  Aligned_cols=56  Identities=23%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             HHhhhhhhhhccHHHH------------------HHHhcCcEEEEcCchHHHHHHHHHHH----hCC------CeEEEEc
Q 023036           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD   62 (288)
Q Consensus        11 ~~rYdRqirl~G~~~q------------------~~L~~~~VlIiG~gglGseiaknL~l----~Gv------g~i~lvD   62 (288)
                      .+||..+|.+|-.+-|                  ++|++.+|++.|+|+.|.-||+.|+.    .|+      ++|.++|
T Consensus       244 l~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D  323 (555)
T 1gq2_A          244 LHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVD  323 (555)
T ss_dssp             HHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEE
T ss_pred             HHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEE
Confidence            4667666666644333                  47899999999999999999999998    896      7999999


Q ss_pred             CCcC
Q 023036           63 DRVV   66 (288)
Q Consensus        63 ~d~v   66 (288)
                      ..-+
T Consensus       324 ~~Gl  327 (555)
T 1gq2_A          324 SKGL  327 (555)
T ss_dssp             TTEE
T ss_pred             CCCe
Confidence            7543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.93  E-value=0.38  Score=41.97  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            47788899998 56899999999999997 5777764

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=91.93  E-value=0.59  Score=41.52  Aligned_cols=73  Identities=21%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh---hCCCceee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~---lNp~v~v~  107 (288)
                      ||+|+| +|.+|+.++..|+..|.. ++.|+|.    +.|-                .|++..+..|..   +...+++.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di----~~~~----------------~~~~~~~~dl~~~~~~~~~~~v~   61 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI----PDKE----------------DDTVGQAADTNHGIAYDSNTRVR   61 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC----GGGH----------------HHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC----CCCh----------------hhHHHHHHHHHHHHhhCCCcEEE
Confidence            799999 999999999999988864 5888885    1110                122222223333   34455555


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .  .     +.+.+++.|+||.+..
T Consensus        62 ~--~-----~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           62 Q--G-----GYEDTAGSDVVVITAG   79 (303)
T ss_dssp             E--C-----CGGGGTTCSEEEECCC
T ss_pred             e--C-----CHHHhCCCCEEEEcCC
Confidence            4  1     1456889999998864

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.93  E-value=0.31  Score=41.63  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCC--CeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGV--GSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gv--g~i~lvD~   63 (288)
                      .+..++|+|.| .|++|.++++.|+..|.  .++.++|.
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r   56 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   56 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEec
Confidence            46778899998 56899999999999995  56888775

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.92  E-value=0.16  Score=45.95  Aligned_cols=32  Identities=13%  Similarity=0.121  Sum_probs=27.4

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            68999996 8899999999999995 68887753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=91.92  E-value=0.12  Score=46.18  Aligned_cols=36  Identities=6%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +..+|+|||+|..|..+|..|...|..+++|+|...
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            346899999999999999999999975699999864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=91.91  E-value=0.18  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +...|+|||.|..|.+.|..|++.|.. ++|+|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~-v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVR-VGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecC
Confidence            457899999999999999999999985 8999875

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=91.91  E-value=0.72  Score=41.06  Aligned_cols=33  Identities=9%  Similarity=-0.032  Sum_probs=26.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|...+++|... |+.-+.++|.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~   37 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF   37 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            5899999999999999999875 55444467764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.86  E-value=0.29  Score=42.60  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   76 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISR   76 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcC
Confidence            35678899998 56899999999999995 4666653

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=91.84  E-value=0.66  Score=40.02  Aligned_cols=36  Identities=17%  Similarity=0.084  Sum_probs=27.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +-..++|+|.|+ |.+|+.+++.|...| .+++++|..
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc
Confidence            345678999985 789999999999999 457777763

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.83  E-value=0.54  Score=42.05  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d   64 (288)
                      ||+|+|+ |.+|..++..|+..|. .++.++|-+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~   35 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCC
Confidence            7999998 9999999999998875 679999864

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.79  E-value=0.42  Score=41.74  Aligned_cols=36  Identities=14%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   65 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGR   65 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4578889999984 68999999999999974 777765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=91.77  E-value=0.46  Score=41.57  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=27.6

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      ..|++++++|.| .||+|.++++.|+..|. ++.++|
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   40 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   40 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEc
Confidence            357788899988 56899999999999996 477776

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.76  E-value=0.27  Score=41.86  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=27.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+++++|.| .||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~   36 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYA   36 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            3467788888 568999999999999965 666554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.74  E-value=0.22  Score=42.94  Aligned_cols=78  Identities=19%  Similarity=0.278  Sum_probs=47.4

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ++++|+|.| .||+|.++++.|+..|.. +.+.+..                     ...+.+.+++.+.+..+  ++..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r---------------------~~~~~~~~~~~~~~~~~--~~~~   58 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYAR---------------------SKKAALETAEEIEKLGV--KVLV   58 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHTTTC--CEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCC---------------------CHHHHHHHHHHHHhcCC--cEEE
Confidence            467788888 469999999999999975 5554220                     22345555666665554  3444


Q ss_pred             eecCCCCcc--hh-------hhccCcEEEEec
Q 023036          109 EKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      +..++.+..  ..       .+...|++|.+.
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   90 (258)
T 3oid_A           59 VKANVGQPAKIKEMFQQIDETFGRLDVFVNNA   90 (258)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555554321  11       234568877654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.74  E-value=0.52  Score=40.39  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r   40 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGR   40 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            577889999985 6899999999999997 5888775

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.72  E-value=0.48  Score=41.15  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   63 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGR   63 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            477889999985 6899999999999997 4777763

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.70  E-value=0.37  Score=41.94  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+++.++|-| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~   41 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDI   41 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            36778888887 559999999999999974 777764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=91.67  E-value=0.39  Score=41.07  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   37 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADV   37 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999985 69999999999999964 777764

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.66  E-value=0.36  Score=41.58  Aligned_cols=82  Identities=24%  Similarity=0.343  Sum_probs=53.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|++++|+|.|+ +|+|.++++.|+..|.. +.++|...                -   ...+.+.+++.+++.++  ++
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~----------------~---~~~~~~~~~~~~~~~~~--~~   65 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQA----------------K---DSDTANKLKDELEDQGA--KV   65 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCG----------------G---GHHHHHHHHHHHHTTTC--EE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCc----------------c---CHHHHHHHHHHHHhcCC--cE
Confidence            367789999985 69999999999999975 66665310                1   22355666666666544  45


Q ss_pred             eeeecCCCCcc--hhh-------hccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GEF-------YDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..+       +...|++|.+.
T Consensus        66 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   99 (262)
T 3ksu_A           66 ALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTV   99 (262)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55566665421  122       34678888764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=91.66  E-value=0.25  Score=42.13  Aligned_cols=35  Identities=9%  Similarity=0.115  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcC
Confidence            46788899998 568999999999999964 777664

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=91.64  E-value=0.71  Score=38.99  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=27.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |..++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r   35 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGR   35 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            34578999995 68999999999999974 777765

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.64  E-value=0.16  Score=46.69  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            5789999999999999999999999998 7999885

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=91.62  E-value=0.58  Score=41.86  Aligned_cols=31  Identities=10%  Similarity=0.114  Sum_probs=26.6

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|.| .|++|+.+++.|+..|. +++++|.
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            5799999 58899999999999995 6888775

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.62  E-value=0.29  Score=43.17  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r   58 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGR   58 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6678899988 56899999999999996 4777764

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=91.58  E-value=0.95  Score=34.75  Aligned_cols=34  Identities=15%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      ..+|+|+|+|+.|..+++.|... |..-+.++|++
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            46899999999999999999875 55555567763

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=91.55  E-value=0.25  Score=42.63  Aligned_cols=78  Identities=15%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+++|+|.| .||+|.++++.|+..|.. +.+.+..                     ...+.+.+.+.+.+..+  ++..
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~---------------------~~~~~~~~~~~~~~~~~--~~~~   80 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAA---------------------NREAADAVVAAITESGG--EAVA   80 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--EEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC---------------------ChhHHHHHHHHHHhcCC--cEEE
Confidence            456678877 568999999999999975 5554321                     22344555666666554  4455


Q ss_pred             eecCCCCcc--hh-------hhccCcEEEEec
Q 023036          109 EKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      ...++.+..  ..       .+...|+||.+.
T Consensus        81 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA  112 (272)
T 4e3z_A           81 IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA  112 (272)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            555554321  11       223678887753

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=91.55  E-value=0.21  Score=45.70  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhC-----CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAG-----VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~G-----vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v  104 (288)
                      ..+|+|+| .|-+|.++++.|...+     .-+++.+-.               ..+.   |+.        +.+..|..
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s---------------~~~a---gk~--------~~~~~~~l   62 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTA---------------ATSA---GST--------LGEHHPHL   62 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEE---------------SSCT---TSB--------GGGTCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEEC---------------CCcC---CCc--------hhhhcccc
Confidence            35899999 7889999999998766     334554422               1112   332        22222221


Q ss_pred             ----eeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          105 ----RVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       105 ----~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                          ++...     +.+.+.++++|+||.|.....+...+..+  +  .++.+|+.++-
T Consensus        63 ~~~~~~~~~-----~~~~~~~~~~DvVf~alg~~~s~~~~~~~--~--~G~~vIDlSa~  112 (352)
T 2nqt_A           63 TPLAHRVVE-----PTEAAVLGGHDAVFLALPHGHSAVLAQQL--S--PETLIIDCGAD  112 (352)
T ss_dssp             GGGTTCBCE-----ECCHHHHTTCSEEEECCTTSCCHHHHHHS--C--TTSEEEECSST
T ss_pred             cccceeeec-----cCCHHHhcCCCEEEECCCCcchHHHHHHH--h--CCCEEEEECCC
Confidence                11111     11234467899999998765555554444  5  66777765443

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=91.55  E-value=0.92  Score=39.60  Aligned_cols=33  Identities=9%  Similarity=0.165  Sum_probs=26.5

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|.|+ |.+|+.+++.|...|. ++++++.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r   35 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   35 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEec
Confidence            3568999995 7899999999999986 4666654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.54  E-value=0.66  Score=40.35  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADV   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            367788999984 6899999999999997 5778775

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.53  E-value=0.46  Score=43.27  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3678999999999999999999999988988875

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=91.53  E-value=0.97  Score=39.97  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             hcCcEEEEcCchHHHH-HHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           30 SKSHILVCGMKGTVAE-FCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        30 ~~~~VlIiG~gglGse-iaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      +..+|.|||+|.+|.. +++.|.. .|+.-+.++|.+.-....+...+-..   .   -..     .+.+   .+.+++.
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~---~---~~~-----~~~l---~~~~D~V   69 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP---Y---ADS-----LSSL---AASCDAV   69 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC---B---CSS-----HHHH---HTTCSEE
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC---c---cCc-----HHHh---hcCCCEE
Confidence            3468999999999996 8898876 45543447786543333322221110   0   000     1112   2334444


Q ss_pred             eeecCCCC---cchhhh-ccCcEEEEe--cCChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          108 VEKGDLSS---LDGEFY-DKFDVVVVS--CCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       108 ~~~~~~~~---~~~~~~-~~~dvVi~~--~~~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                      ........   .....+ .+..+++--  ..+.+....+.+.+++  .++.+..+...
T Consensus        70 ~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~--~g~~~~~~~~~  125 (319)
T 1tlt_A           70 FVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR--KKLTLMVGFNR  125 (319)
T ss_dssp             EECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH--TTCCEEEECGG
T ss_pred             EEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH--cCCeEEEeeec
Confidence            43332211   112223 334455432  2356677788889988  88887766444

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.52  E-value=0.45  Score=41.19  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +.+++++|.|+ ||+|.++++.|+..|.. +.+.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~   58 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINY   58 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEc
Confidence            56788999985 69999999999999975 55543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=91.51  E-value=0.95  Score=39.96  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCC------CeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGV------GSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gv------g~i~lvD~   63 (288)
                      |.+.+|+|.| .|.+|+.+++.|+..|.      .+++++|.
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r   53 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV   53 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEES
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEc
Confidence            4556899999 58899999999999993      46777775

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=91.49  E-value=0.59  Score=40.38  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDK   41 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            367788999985 6899999999999996 4777765

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=91.49  E-value=1.4  Score=39.66  Aligned_cols=100  Identities=15%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ..+|+|.|+ |.+|..+++.|...|. ++++++.+.                    .+.+    ++.+.+. +  .++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~--------------------~~~~----~~~l~~~-~--~v~~v   56 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSL--------------------KGLI----AEELQAI-P--NVTLF   56 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCS--------------------CSHH----HHHHHTS-T--TEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC--------------------Chhh----HHHHhhc-C--CcEEE
Confidence            578999995 7899999999999985 477665311                    1111    1222221 2  24444


Q ss_pred             ecC-CCCc--chhhhccCcEEEEecCCh-----hhHHHHHHHHHhcCCC-c-eEEEEeeec
Q 023036          110 KGD-LSSL--DGEFYDKFDVVVVSCCSV-----TTKKLINEKCRKLSKR-V-AFYTVDCRD  160 (288)
Q Consensus       110 ~~~-~~~~--~~~~~~~~dvVi~~~~~~-----~~~~~i~~~~~~~~~~-i-p~i~~~~~G  160 (288)
                      ..+ +.+.  ....++++|+||.+....     ..-..+-+.|++  .+ + .||..++.+
T Consensus        57 ~~D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~~--~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           57 QGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKR--AGTIQHYIYSSMPD  115 (352)
T ss_dssp             ESCCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHH--HSCCSEEEEEECCC
T ss_pred             ECCccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHHH--cCCccEEEEeCCcc
Confidence            555 5442  244577889888654321     122456667766  55 3 566666543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.47  E-value=0.25  Score=41.49  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=28.2

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ++++|+|.| .|++|.++++.|+..|. .++.++|.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r   37 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATAR   37 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEec
Confidence            467899998 56899999999999994 56888875

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=91.45  E-value=0.63  Score=42.00  Aligned_cols=26  Identities=8%  Similarity=-0.166  Sum_probs=19.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHH
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVL   52 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l   52 (288)
                      ..|+.-||.|||+|.+|..-++++..
T Consensus        21 ~~MkkirvgiIG~G~ig~~H~~a~~~   46 (393)
T 4fb5_A           21 QSMKPLGIGLIGTGYMGKCHALAWNA   46 (393)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHTT
T ss_pred             cCCCCccEEEEcCCHHHHHHHHHHHh
Confidence            45778899999999999887776643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.44  E-value=0.64  Score=40.83  Aligned_cols=91  Identities=11%  Similarity=0.210  Sum_probs=55.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|++++++|.|+ +|+|.++++.|+..|.. +.++|...-..    ..- +...     ...+.+.+.+.+.+..+  ++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~----~~~-~~~~-----~~~~~~~~~~~~~~~~~--~~   91 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLD----GVK-LPMS-----TPDDLAETVRQVEALGR--RI   91 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCT----TCC-SCCC-----CHHHHHHHHHHHHHTTC--CE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccc----ccc-cccc-----CHHHHHHHHHHHHhcCC--ce
Confidence            577889999995 68999999999999975 77777532110    000 0000     22345556666666654  45


Q ss_pred             eeeecCCCCcc--hh-------hhccCcEEEEec
Q 023036          107 SVEKGDLSSLD--GE-------FYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  131 (288)
                      ..+..++.+..  ..       .+...|++|.+.
T Consensus        92 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A           92 IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55556665421  12       234789988764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=91.44  E-value=0.24  Score=42.10  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      |++++|+|.|+ +|+|.++++.|+..|.. +.+++
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~   38 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHY   38 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEe
Confidence            56788999885 68999999999999964 55544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=91.44  E-value=0.42  Score=40.84  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~   40 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLK   40 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            367788999985 69999999999999975 7777753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.43  E-value=0.16  Score=44.82  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.+|+|+|+|++|+.++..|+.+|. .++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            3589999999999999999999995 68998875

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=91.43  E-value=0.47  Score=41.73  Aligned_cols=100  Identities=9%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      |+.-||.|+| +|.+|.++++.+... ++.=+.++|...-.        . ...|+   |.         +..+.+.+.+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~--------~-~G~d~---ge---------l~g~~~gv~v   63 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP--------Q-LGQDA---GA---------FLGKQTGVAL   63 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT--------T-TTSBT---TT---------TTTCCCSCBC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc--------c-ccccH---HH---------HhCCCCCcee
Confidence            4456899999 899999999998864 33333334542110        0 01222   21         1112222221


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                        .     +..++.+.++|+||+++ +++.....-+.|.+  +++|++. ++.|
T Consensus        64 --~-----~dl~~ll~~~DVVIDfT-~p~a~~~~~~~al~--~G~~vVi-gTTG  106 (272)
T 4f3y_A           64 --T-----DDIERVCAEADYLIDFT-LPEGTLVHLDAALR--HDVKLVI-GTTG  106 (272)
T ss_dssp             --B-----CCHHHHHHHCSEEEECS-CHHHHHHHHHHHHH--HTCEEEE-CCCC
T ss_pred             --c-----CCHHHHhcCCCEEEEcC-CHHHHHHHHHHHHH--cCCCEEE-ECCC
Confidence              1     12345667899999987 44555566778878  8999885 4445

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.42  E-value=0.21  Score=41.91  Aligned_cols=32  Identities=9%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|.+|..+++.|...|. +++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4689999999999999999999996 5777775

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.40  E-value=0.32  Score=42.76  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~   81 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYL   81 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578899999995 68999999999999965 777664

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=91.40  E-value=0.7  Score=42.34  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .++|+|||.|.+|.|+|..|...|. ++++++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~  178 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIIL  178 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcC
Confidence            6899999999999999999999996 59998763

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=91.39  E-value=0.48  Score=41.00  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             hhhhhccHH-HHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           16 RQIRVWGAD-AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        16 Rqirl~G~~-~q~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||-.-+|.- ....|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        14 ~~~~gp~~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r   62 (281)
T 3ppi_A           14 AQTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADL   62 (281)
T ss_dssp             ----------CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CcccCcchhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            444444432 234678889999995 68999999999999974 778765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.37  E-value=0.22  Score=45.96  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ...|+|||+|..|..+|..|+..|..+++|+|....
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            467999999999999999999999867999998765

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.33  E-value=0.16  Score=46.45  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=32.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ..+...+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        22 ~~~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           22 NLLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             -CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            33556789999999999999999999998 599999753

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=91.32  E-value=0.46  Score=41.33  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM---KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~---gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+   ||+|.++++.|+..|. ++.++|.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r   55 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYA   55 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            467789999997   5999999999999996 4777765

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=91.29  E-value=0.33  Score=41.63  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   36 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeC
Confidence            4567888888 568999999999999964 777764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=91.29  E-value=0.4  Score=41.67  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|. ++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r   53 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGR   53 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3556 78888884 5899999999999996 4777764

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=91.26  E-value=0.75  Score=43.70  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|.| .|++|.++++.|+..|..++.+++.
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R  259 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR  259 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            357788887 7799999999999999988988875

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=91.22  E-value=0.64  Score=41.77  Aligned_cols=79  Identities=11%  Similarity=0.114  Sum_probs=48.8

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPM  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg------~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~  103 (288)
                      .||+|+|+ |.+|+.++..|+..|..      ++.++|.+.              +.    ...|++..+..|... .|.
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~--------------~~----~~~~~~g~~~dl~~~~~~~   67 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPN--------------EK----AQKALQGVMMEIDDCAFPL   67 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSC--------------HH----HHHHHHHHHHHHHTTTCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCC--------------cc----ccccchhhHHHHhhhcccc
Confidence            58999997 99999999999998873      788888520              00    022344444445542 232


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      . .....   .....+.+++.|+||.+..
T Consensus        68 ~-~~i~~---~~~~~~al~~aD~Vi~~ag   92 (329)
T 1b8p_A           68 L-AGMTA---HADPMTAFKDADVALLVGA   92 (329)
T ss_dssp             E-EEEEE---ESSHHHHTTTCSEEEECCC
T ss_pred             c-CcEEE---ecCcHHHhCCCCEEEEeCC
Confidence            1 11111   1123566889999998753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.21  E-value=0.72  Score=40.45  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|++   |+|.++++.|+..|.. +.++|.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r   64 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYL   64 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeC
Confidence            4678899999986   8999999999999975 788775

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=91.21  E-value=0.52  Score=40.62  Aligned_cols=37  Identities=5%  Similarity=0.069  Sum_probs=27.3

Q ss_pred             HHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           26 QRRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        26 q~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+|++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3457788899988 56899999999999996 5777764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=91.20  E-value=0.19  Score=45.49  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++.++|.
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            46889999999999999999999999996 5888886

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=91.20  E-value=0.24  Score=45.12  Aligned_cols=35  Identities=26%  Similarity=0.242  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~   65 (288)
                      .+||+|||.|.-|..+|+.|.+.|-+ +|+|+|+..
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            57999999999999999999999875 899999753

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=91.19  E-value=0.51  Score=40.19  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r   41 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTAT   41 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999985 68999999999999975 777664

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=91.18  E-value=0.22  Score=45.47  Aligned_cols=39  Identities=8%  Similarity=-0.026  Sum_probs=31.2

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .+..+..+|+|||+|..|..+|..|++.|+. ++|+|.+.
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~E~~~   56 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQSGID-CDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            3455678899999999999999999999984 99999764

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=91.16  E-value=0.64  Score=41.70  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=25.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      .+|.|||+|.+|...+++|... |+.-+.++|.+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~   36 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            4799999999999999999874 44434466753

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=91.16  E-value=0.25  Score=44.67  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=31.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            36889999999999999999999999996 4777775

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.16  E-value=0.2  Score=45.06  Aligned_cols=34  Identities=12%  Similarity=0.007  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            5678999999999999999999999877888774

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.15  E-value=0.53  Score=39.83  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r   46 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGS   46 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            46788999998 56899999999999995 4777765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.13  E-value=0.24  Score=44.50  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=31.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4679999999999999999999997 69999976553

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=91.09  E-value=0.5  Score=44.62  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             cCcEEEEcCchH-HHHHHHHHHH--hCC--CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHH---HH-hhhC
Q 023036           31 KSHILVCGMKGT-VAEFCKNIVL--AGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD---SL-KDFN  101 (288)
Q Consensus        31 ~~~VlIiG~ggl-GseiaknL~l--~Gv--g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~---~l-~~lN  101 (288)
                      ..+|.|||+|++ |..++..|+.  .+.  .+++|+|-+.                    |+.|++....   .+ ...+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~--------------------~~e~~~~~~~~~~~~~~~~~   66 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE--------------------GKEKLEIVGALAKRMVEKAG   66 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG--------------------GHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC--------------------ChHHHHHHHHHHHHHHhhcC
Confidence            458999999998 8888888887  554  6799998511                    3344444322   22 2344


Q ss_pred             CCceeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ...++....    + -.+.+++.|+||++...
T Consensus        67 ~~~~i~~t~----D-~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           67 VPIEIHLTL----D-RRRALDGADFVTTQFRV   93 (450)
T ss_dssp             CCCEEEEES----C-HHHHHTTCSEEEECCCT
T ss_pred             CCcEEEEeC----C-HHHHhCCCCEEEEcCCC
Confidence            445555431    1 23568899999998753

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=91.09  E-value=0.24  Score=45.45  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ...+|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356899999999999999999999987699998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.08  E-value=0.2  Score=45.72  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr  198 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI  198 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            667899999999999999999999998 8999885

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=91.05  E-value=1.2  Score=39.71  Aligned_cols=37  Identities=14%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             HhcCcEEEEcCchHHH-HHHHHHHHhCCCeEEEEcCCc
Q 023036           29 LSKSHILVCGMKGTVA-EFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~gglGs-eiaknL~l~Gvg~i~lvD~d~   65 (288)
                      |+.-+|.|||+|..|. ..+.+|...|+.-+.++|.+.
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~   39 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDS   39 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCT
T ss_pred             CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCH
Confidence            3456899999999986 678888777876567888754

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=91.03  E-value=0.34  Score=45.82  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=27.7

Q ss_pred             HhcCcEEEEcCchH--HHHHHHHHHHhC--CCeEEEEcC
Q 023036           29 LSKSHILVCGMKGT--VAEFCKNIVLAG--VGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~ggl--GseiaknL~l~G--vg~i~lvD~   63 (288)
                      +++.+|.|||+|++  |..++..|+..-  .+.++|+|-
T Consensus         3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di   41 (450)
T 3fef_A            3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDL   41 (450)
T ss_dssp             CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECS
T ss_pred             CCCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeC
Confidence            35579999999996  689999988622  248999986

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=91.02  E-value=0.22  Score=45.04  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=32.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  177 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY  177 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            368999999999999999999999999965 8888863

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.00  E-value=0.56  Score=41.21  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +||+++.++|-|+ +|+|.++|+.|+..|.. +.++|.
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r   61 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGR   61 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4789999999985 58999999999999975 888875

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.96  E-value=0.23  Score=45.67  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|..++|+|+|+|.+|..+|+.|...|.. +++.|.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcC
Confidence            36789999999999999999999999985 778874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=90.96  E-value=0.91  Score=38.27  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=28.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   43 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDR   43 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5678899998 46899999999999996 4777765

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.95  E-value=0.23  Score=44.91  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=32.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..|.+++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  178 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVF  178 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            368999999999999999999999999965 8888863

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=90.95  E-value=0.24  Score=44.34  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            6889999999999999999999999996 58888863

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=90.89  E-value=0.17  Score=47.83  Aligned_cols=38  Identities=16%  Similarity=0.369  Sum_probs=35.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC--CeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD~d   64 (288)
                      ++|++.||++.|+|+.|.-+++.|+..|+  ++|.++|..
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            46899999999999999999999999999  899999975

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=90.88  E-value=0.27  Score=44.25  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      ...|+|||+|..|+.+|..|+..|.. ++|+|...+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999975 9999987544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.88  E-value=0.21  Score=44.65  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDP  173 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            36889999999999999999999999996 4788776

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.87  E-value=0.47  Score=42.43  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -...+|+|.|+|++|.-.+..+...|...++.+|.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            35678999999999999999999999998888875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.86  E-value=0.96  Score=40.96  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|..++..+...|..++..+|.
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  224 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT  224 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            578999999999999999888899888888874

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.85  E-value=0.2  Score=46.68  Aligned_cols=43  Identities=9%  Similarity=-0.084  Sum_probs=34.2

Q ss_pred             ccHHH--HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           21 WGADA--QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        21 ~G~~~--q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |....  ...|++++|.|||+|.+|..+|+.+...|.. +..+|..
T Consensus       133 W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~-V~~~d~~  177 (404)
T 1sc6_A          133 GNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE  177 (404)
T ss_dssp             CC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             ccccCCCccccCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            75432  2358999999999999999999999999964 8888863

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=90.85  E-value=0.36  Score=41.65  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +.++.|+|.| .||+|.++++.|+..|.. +.++|
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~   56 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSH   56 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            5667788888 468999999999999975 66665

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=90.83  E-value=0.45  Score=42.59  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |.+++|+|.|+ ||+|.++++.|+..|.. +.+.+.+...              -   ...+.+.+.+.+.+..+  ++.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~~--------------r---~~~~~~~l~~~~~~~~~--~~~   62 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVG--------------R---NASNVEAIAGFARDNDV--DLR   62 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTTT--------------T---THHHHHHHHHHHHHHTC--CEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCcccc--------------c---CHHHHHHHHHHHHhcCC--cEE
Confidence            45678899885 79999999999999965 5555432211              1   23355666666666554  345


Q ss_pred             eeecCCCCcc--hhh-------hccCcEEEEecC
Q 023036          108 VEKGDLSSLD--GEF-------YDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~--~~~-------~~~~dvVi~~~~  132 (288)
                      ....++.+..  ...       +...|+||.+..
T Consensus        63 ~~~~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           63 TLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555555421  222       237899887643

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=90.82  E-value=0.37  Score=40.49  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=23.2

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEE
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTL   60 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~l   60 (288)
                      ++|+|.| .|++|.++++.|+..|.. +.+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~-v~~   30 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCK-VLV   30 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            5688888 568999999999999965 555

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.82  E-value=0.39  Score=41.42  Aligned_cols=35  Identities=34%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r   38 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   38 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467788999985 6899999999999996 5777764

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=90.82  E-value=0.93  Score=41.11  Aligned_cols=35  Identities=9%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             HhcCcEEEEcCchHHH-HHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVA-EFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGs-eiaknL~l~Gvg~i~lvD~   63 (288)
                      |+.-+|.|||+|..|. ..+..+...|+.-+.++|.
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~   59 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEK   59 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECS
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcC
Confidence            5678999999999885 4677777778766667775

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=90.82  E-value=0.42  Score=41.31  Aligned_cols=27  Identities=19%  Similarity=0.037  Sum_probs=23.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGV   55 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gv   55 (288)
                      |+..+|+|.|+ |.+|+.+++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            45689999995 7899999999999986

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=90.80  E-value=0.28  Score=42.08  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   37 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGR   37 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677888888 56899999999999996 5777764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.80  E-value=0.44  Score=41.50  Aligned_cols=35  Identities=11%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r   55 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYH   55 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            47788899998 56899999999999996 4777764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=90.79  E-value=0.5  Score=40.30  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   36 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGF   36 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            45778999985 6999999999999996 4777664

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=90.78  E-value=0.6  Score=41.76  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=27.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHH-H-hCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~-l-~Gvg~i~lvD~d~   65 (288)
                      ..+|.|||+|.+|...++.|. . .|+.-+.++|.+.
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~   44 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDS   44 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCH
Confidence            458999999999999999998 4 4555456777643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.77  E-value=0.58  Score=42.58  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|...+..+...|..++..+|.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  215 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTR  215 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999999999988888875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.76  E-value=0.22  Score=45.52  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            4778999999999999999999999998 7999875

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=90.76  E-value=0.22  Score=45.08  Aligned_cols=35  Identities=6%  Similarity=0.097  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|..+|+.|...|.. +.++|.
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~dr  195 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSR  195 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            57889999999999999999999999974 888875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=90.75  E-value=0.26  Score=44.59  Aligned_cols=35  Identities=9%  Similarity=0.023  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            5888999999999999999999999996 5888875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.73  E-value=2  Score=38.18  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             hhhhhhhccHHHHH--HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHH
Q 023036           14 YDRQIRVWGADAQR--RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (288)
Q Consensus        14 YdRqirl~G~~~q~--~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka   90 (288)
                      |++.+++...|.+-  --...+||.||||..|.. +..++. .| .+++-+|.                      .....
T Consensus       104 ~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~t-a~~lA~~~g-a~V~gIDi----------------------s~~~l  159 (298)
T 3fpf_A          104 YPRYLELLKNEAALGRFRRGERAVFIGGGPLPLT-GILLSHVYG-MRVNVVEI----------------------EPDIA  159 (298)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHH-HHHHHHTTC-CEEEEEES----------------------SHHHH
T ss_pred             cccHHHHHHHHHHHcCCCCcCEEEEECCCccHHH-HHHHHHccC-CEEEEEEC----------------------CHHHH
Confidence            44544544444320  114689999999963321 111333 35 46777775                      33345


Q ss_pred             HHHHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           91 EVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        91 ~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      +.+++++++..- -+++....+..+..   -..||+|+.+.........+.++.+.++.+=.++.....|.
T Consensus       160 ~~Ar~~~~~~gl-~~v~~v~gDa~~l~---d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~~  226 (298)
T 3fpf_A          160 ELSRKVIEGLGV-DGVNVITGDETVID---GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGM  226 (298)
T ss_dssp             HHHHHHHHHHTC-CSEEEEESCGGGGG---GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCGG
T ss_pred             HHHHHHHHhcCC-CCeEEEECchhhCC---CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcch
Confidence            556666665443 35566555544332   36799999875533333455555555433434444444443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.72  E-value=0.32  Score=42.05  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~   50 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYA   50 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            577889999985 58999999999999974 666553

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=90.63  E-value=0.26  Score=44.28  Aligned_cols=36  Identities=8%  Similarity=0.031  Sum_probs=31.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      ...|+|||+|..|..+|..|+..|. +++|+|...+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4579999999999999999999997 59999986543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.60  E-value=0.22  Score=44.96  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|..+|+.|...|.. ++++|.
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~  186 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQ-RFLYTG  186 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCC-EEEEES
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58889999999999999999999999974 888885

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.55  E-value=0.26  Score=43.81  Aligned_cols=32  Identities=16%  Similarity=0.107  Sum_probs=28.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..++|.|||+|-+|+.+|.+|+ +|. .++++|.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~   42 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDV   42 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEEC
Confidence            4678999999999999999999 997 5899885

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=90.55  E-value=3.9  Score=33.07  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=50.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhC-CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~G-vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...+|+-+|||. |. ++..|+..| -.+++.+|.                      .....+.+.+++.+.+- -+++.
T Consensus        40 ~~~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~v~~   94 (204)
T 3e05_A           40 DDLVMWDIGAGS-AS-VSIEASNLMPNGRIFALER----------------------NPQYLGFIRDNLKKFVA-RNVTL   94 (204)
T ss_dssp             TTCEEEEETCTT-CH-HHHHHHHHCTTSEEEEEEC----------------------CHHHHHHHHHHHHHHTC-TTEEE
T ss_pred             CCCEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHHHHhCC-CcEEE
Confidence            467899999984 44 444555554 467888885                      23344555666555442 23555


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ...+..+... ....||+|++..........+.+..+.
T Consensus        95 ~~~d~~~~~~-~~~~~D~i~~~~~~~~~~~~l~~~~~~  131 (204)
T 3e05_A           95 VEAFAPEGLD-DLPDPDRVFIGGSGGMLEEIIDAVDRR  131 (204)
T ss_dssp             EECCTTTTCT-TSCCCSEEEESCCTTCHHHHHHHHHHH
T ss_pred             EeCChhhhhh-cCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            5554432211 226799999875433333344444443

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=90.55  E-value=1.7  Score=38.52  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh-CCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~-Gvg~i~lvD~   63 (288)
                      +|+|.|+ |++|+.+++.|+.. |. +++++|.
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~-~V~~~~r   33 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSC-EEEEEEC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCC-eEEEEec
Confidence            6999995 88999999999998 54 5777775

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.54  E-value=0.45  Score=41.20  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=28.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.+.|.
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~   60 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYA   60 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467888999885 68999999999999965 666553

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=90.54  E-value=1.1  Score=39.03  Aligned_cols=36  Identities=8%  Similarity=0.013  Sum_probs=26.6

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.-...+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   44 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSR   44 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEec
Confidence            445678899998 57899999999999995 6777775

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=90.53  E-value=0.89  Score=40.32  Aligned_cols=36  Identities=8%  Similarity=-0.044  Sum_probs=25.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      |+..+|.|||+|.+|..+++.|... ++.=..++|.+
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~   43 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRN   43 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4567999999999999999999873 43322366653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=90.52  E-value=0.52  Score=42.51  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3578999999999999999888899888888875

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=90.44  E-value=0.51  Score=40.48  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGM---KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~---gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |.+++|+|.|+   |++|.++++.|+..|.. +.++|.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~   44 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   44 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCc
Confidence            66788999997   59999999999999964 7887753

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=90.43  E-value=1  Score=39.70  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|.|+ |++|+.+++.|+..|. +++++|.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~   32 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            6899985 7899999999999995 4777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=90.41  E-value=0.68  Score=41.87  Aligned_cols=36  Identities=14%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|++++|+|.|+ +|+|.++++.|+..|. ++.++|.+
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~   78 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKT   78 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECC
Confidence            577889999995 6899999999999996 58888753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=90.39  E-value=0.41  Score=40.82  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r   38 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467888999985 68999999999999964 777764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.38  E-value=0.26  Score=46.96  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.+++|+|+|+|++|..+|+.|...|. ++.++|.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~  296 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEI  296 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            678999999999999999999999998 6888876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.37  E-value=0.32  Score=41.60  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r   53 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYG   53 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            36778899998 46899999999999996 4777664

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.35  E-value=1  Score=40.78  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI  228 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            568999999999999999888899888888874

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=90.34  E-value=1.2  Score=37.99  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDL   38 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            366788999985 6899999999999996 5878775

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=90.34  E-value=0.26  Score=44.29  Aligned_cols=35  Identities=11%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            6889999999999999999999998885 5888875

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=90.33  E-value=0.26  Score=44.89  Aligned_cols=36  Identities=11%  Similarity=0.143  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~  200 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPY  200 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5889999999999999999999999997 48888853

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=90.29  E-value=0.63  Score=41.60  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=27.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      .|.+++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~   77 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   77 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            47778899988 56999999999999996 477776

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=90.29  E-value=2  Score=35.90  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ...+|+.+|+| .|.-.. .++.. ..+++.+|.                      .....+.+.+++....-.-+++..
T Consensus        91 ~~~~vldiG~G-~G~~~~-~l~~~-~~~v~~vD~----------------------~~~~~~~a~~~~~~~~~~~~~~~~  145 (248)
T 2yvl_A           91 KEKRVLEFGTG-SGALLA-VLSEV-AGEVWTFEA----------------------VEEFYKTAQKNLKKFNLGKNVKFF  145 (248)
T ss_dssp             TTCEEEEECCT-TSHHHH-HHHHH-SSEEEEECS----------------------CHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred             CCCEEEEeCCC-ccHHHH-HHHHh-CCEEEEEec----------------------CHHHHHHHHHHHHHcCCCCcEEEE
Confidence            46789999998 454433 33333 457888775                      333455556665554321234444


Q ss_pred             ecCCCCcc-hhhhccCcEEEEecCCh-hhHHHHHHHHHhcCCCceEEEE
Q 023036          110 KGDLSSLD-GEFYDKFDVVVVSCCSV-TTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       110 ~~~~~~~~-~~~~~~~dvVi~~~~~~-~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                      ..++.+.. .  -..||+|+....+. .....+.+..+.  .+.-++..
T Consensus       146 ~~d~~~~~~~--~~~~D~v~~~~~~~~~~l~~~~~~L~~--gG~l~~~~  190 (248)
T 2yvl_A          146 NVDFKDAEVP--EGIFHAAFVDVREPWHYLEKVHKSLME--GAPVGFLL  190 (248)
T ss_dssp             CSCTTTSCCC--TTCBSEEEECSSCGGGGHHHHHHHBCT--TCEEEEEE
T ss_pred             EcChhhcccC--CCcccEEEECCcCHHHHHHHHHHHcCC--CCEEEEEe
Confidence            44443321 1  14699999865544 444444444433  44444433

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=90.27  E-value=0.28  Score=44.20  Aligned_cols=35  Identities=17%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ...|+|||+|..|..+|..|++.|.. ++|+|....
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~-V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCCC
Confidence            35799999999999999999999975 999998654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.22  E-value=0.22  Score=43.94  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...+|+|||+|..|..+|..|++.|.. ++|+|..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~-v~vie~~   35 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLS-YVILDAE   35 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCC-EEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            346899999999999999999999985 9999975

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=90.20  E-value=0.66  Score=41.71  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=27.1

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|+|.| .|.+|+.+++.|+..|. +++++|..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999 47899999999999994 68887753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.20  E-value=1.7  Score=39.28  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~  223 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI  223 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            568999999999999999998999888888874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=90.17  E-value=1.6  Score=39.44  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999999999888888874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.15  E-value=1.1  Score=43.12  Aligned_cols=33  Identities=15%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|+|.|.+|..+++.|...|.. ++++|.
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~~~~-vvvid~  158 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESRNHL-FVVVTD  158 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTTTCC-EEEEES
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCC-EEEEEC
Confidence            456899999999999999999999976 888886

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=90.15  E-value=0.34  Score=44.95  Aligned_cols=35  Identities=14%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~-V~~~d~  222 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDR  222 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECS
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCE-EEEEcC
Confidence            47899999999999999999999998854 777775

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.14  E-value=0.82  Score=38.97  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             HHHhcCcEEEEcC---chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM---KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~---gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+++++|+|.|+   ||+|.++++.|+..|. ++.++|.
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r   48 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYV   48 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEec
Confidence            4678899999996   5999999999999997 5788775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	8e-40
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	4e-23
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	1e-16

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 8e-40
 Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 26/253 (10%)

Query: 5   ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64
           +L +++   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D  
Sbjct: 1   KLLKEQ--KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN 58

Query: 65  VVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL---DGEFY 121
            V+ E    NF +    ++  GK  AE   + L++ N  V  S  +    +L   D  F+
Sbjct: 59  QVSGEDAGNNFFLQRS-SI--GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFF 115

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            +F VVV +    +T   + +                    G + + ++ H   +   + 
Sbjct: 116 CRFTVVVATQLPESTSLRLADVLWNSQI--PLLICRTYGLVGYMRIIIKEHPVIESHPDN 173

Query: 182 TIE---CQLRYPSFEEAI-SVPWRALPRKASK----LYFALRVLEQFEEAEGRSPGEISI 233
            +E       +P   E   S     + +K       +    + L Q+             
Sbjct: 174 ALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETN-------- 225

Query: 234 ADLPAVLKLKKEL 246
             +P   K K++ 
Sbjct: 226 GRIPKTYKEKEDF 238

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (238), Expect = 4e-23
 Identities = 44/245 (17%), Positives = 84/245 (34%), Gaps = 18/245 (7%)

Query: 14  YDRQIRVWGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           +         ++ Q  L    +LV G  G   E  KN+ L+G   + ++D   +     +
Sbjct: 19  FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN 78

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
             FL  P +    G+  AEV  + L D  P   V      +   +  FY +F ++V    
Sbjct: 79  RQFLFRPKDI---GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 135

Query: 133 SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQ------KIEETIECQ 186
           S+  ++ IN     L     +       S     +D     +          +   IEC 
Sbjct: 136 SIIARRWINGMLISLLN---YEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 192

Query: 187 LRYPSFEEAISVPW---RALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLK 243
                +   ++ P     ++PR        +R+L+  +E        +   D   +  + 
Sbjct: 193 --LELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIF 250

Query: 244 KELCE 248
           ++  E
Sbjct: 251 QKSLE 255

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 75.4 bits (184), Expect = 1e-16
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 6/188 (3%)

Query: 5   ELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           EL++QE   Y+RQI +     D Q  L  S +L+ G+ G      + +  AGVG+LTL+D
Sbjct: 2   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 61

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              V+        L         G+   E   D+L   NP + ++     L   +     
Sbjct: 62  FDTVSLSNLQRQTLHSDATV---GQPKVESARDALTRINPHIAITPVNALLDDAELAALI 118

Query: 123 KFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
               +V+ C  +V  +  +N  C      +        +    +F         +     
Sbjct: 119 AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL 178

Query: 182 TIECQLRY 189
             E  L  
Sbjct: 179 FGENALTC 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.71
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.51
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.45
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.41
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.37
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.33
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.32
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.31
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.31
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.1
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.09
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.04
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.03
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.97
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.92
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.92
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.92
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.91
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.85
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.84
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.84
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.8
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.8
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.8
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.72
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.72
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.72
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.66
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.66
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.63
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.59
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.53
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.45
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.39
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.33
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.33
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.31
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.28
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.26
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.18
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.12
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.1
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.06
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.93
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.86
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.77
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.75
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.73
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.72
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.65
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.63
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.5
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.29
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.29
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.27
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.23
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.19
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.17
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.16
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.15
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.14
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.14
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.13
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.12
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.12
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.1
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.03
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.96
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.93
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.86
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.82
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.77
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.71
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.64
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	94.61
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.61
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.6
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.51
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.51
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.42
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.41
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.4
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.33
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.3
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.25
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.21
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.18
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.13
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.12
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.1
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.07
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.97
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.96
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.93
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.92
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.87
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.87
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.85
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.81
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.68
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.64
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.63
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	93.59
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.58
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.5
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.46
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.43
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.43
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.29
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.28
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.27
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.27
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.22
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.21
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.2
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.18
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.18
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.15
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.13
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.1
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.08
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.08
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.98
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.97
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.95
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.87
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.83
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.82
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.82
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.77
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.72
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.72
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.71
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.67
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.48
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.46
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.43
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.4
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.38
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.33
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	92.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.31
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.26
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.24
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.05
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.01
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.8
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.77
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.76
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.47
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.42
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.39
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.33
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.15
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.13
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.07
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.01
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.87
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.82
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.7
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.65
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.36
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.29
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.25
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.09
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.04
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.88
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.79
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	89.7
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.64
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.6
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.4
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	89.28
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.11
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.06
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.03
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.5
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.46
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	88.44
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.33
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	88.24
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.14
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.13
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	88.13
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.11
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.11
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	88.09
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	87.96
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	87.83
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	87.82
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.77
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	87.68
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.58
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.48
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.43
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.29
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	87.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.93
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	86.86
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	86.76
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.75
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.75
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.7
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	86.64
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.63
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	86.56
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	86.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.49
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.4
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.27
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.16
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.11
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.08
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.07
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.74
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.73
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.7
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.65
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.45
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.37
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.18
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.17
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	84.95
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	84.88
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	84.28
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.23
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.08
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	84.01
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	83.69
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.51
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	83.46
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	83.36
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.26
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.25
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.2
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	82.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.59
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.39
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.27
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.17
d1rooa_	35	Sea anemone toxin k {Sun anemone (Stichodactyla he	82.15
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	82.13
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.85
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.56
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	81.31
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.09
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	80.99
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.18
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.01

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-52  Score=404.41  Aligned_cols=166  Identities=25%  Similarity=0.402  Sum_probs=156.8

Q ss_pred             HHHhhhhhhhhccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcH
Q 023036           10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (288)
Q Consensus        10 e~~rYdRqirl~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~K   89 (288)
                      +.+|||||+||||.++|++|++++|+|+|+||+|+|+||||+++|||+|||+|+|.|+.+|++||||++++|+   |++|
T Consensus         4 ke~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~di---Gk~k   80 (529)
T d1yova1           4 KEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI---GKNR   80 (529)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGT---TSBH
T ss_pred             hhhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhC---CCHH
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHhhhCCCceeeeeecCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceEEEE
Q 023036           90 AEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (288)
Q Consensus        90 a~~~~~~l~~lNp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~v~  166 (288)
                      |++++++|+++||+|+++.+...+.+   .+.+++++||+||+|.++.+.+..++++|++  +++|||.+++.|++|++|
T Consensus        81 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~--~~ip~i~~~~~G~~G~v~  158 (529)
T d1yova1          81 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGLVGYMR  158 (529)
T ss_dssp             HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHH--HTCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccCCEEEEE
Confidence            99999999999999999988776543   3568899999999999999999999999999  999999999999999999


Q ss_pred             EEcCCeeeecCCCC
Q 023036          167 VDLQNHKYSKQKIE  180 (288)
Q Consensus       167 ~d~~~~~~~~~~~~  180 (288)
                      +|+|+|.+++++++
T Consensus       159 ~~~~~~~~~e~~p~  172 (529)
T d1yova1         159 IIIKEHPVIESHPD  172 (529)
T ss_dssp             EECSCEEESCCCCS
T ss_pred             EEeCCceEEecCCC
Confidence            99999999876654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-39  Score=284.75  Aligned_cols=159  Identities=26%  Similarity=0.338  Sum_probs=150.4

Q ss_pred             CCCHHHHHhhhhhhhhc--cHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCcc
Q 023036            5 ELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (288)
Q Consensus         5 ~l~~~e~~rYdRqirl~--G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di   82 (288)
                      +||++|.+||+||++||  |.++|+||++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus         2 ~l~~~e~~ry~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~di   81 (247)
T d1jw9b_           2 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATV   81 (247)
T ss_dssp             CCCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGT
T ss_pred             CCCHHHHHHhhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhc
Confidence            69999999999999995  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhhCCCceeeeeecCCCCc-chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus        83 ~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                         |++|+++++++|+++||+++++.+...+... ...++..+|+||++.++...+..++++|++  +++|+|.++..|+
T Consensus        82 ---G~~K~~~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~--~~ip~i~g~~~~~  156 (247)
T d1jw9b_          82 ---GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFA--AKVPLVSGAAIRM  156 (247)
T ss_dssp             ---TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHH--HTCCEEEEEEEBT
T ss_pred             ---CchHHHHHHHHHHHhhcccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHHHH--hCCCccccccccc
Confidence               9999999999999999999999998877643 466778999999999999999999999999  9999999999999


Q ss_pred             eEEEEEE
Q 023036          162 CGEIFVD  168 (288)
Q Consensus       162 ~G~v~~d  168 (288)
                      .|++...
T Consensus       157 ~g~~~~~  163 (247)
T d1jw9b_         157 EGQITVF  163 (247)
T ss_dssp             EEEEEEE
T ss_pred             ccceEEE
Confidence            9987643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-37  Score=289.66  Aligned_cols=250  Identities=18%  Similarity=0.220  Sum_probs=181.5

Q ss_pred             hhhhhhhcc-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHH
Q 023036           14 YDRQIRVWG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV   92 (288)
Q Consensus        14 YdRqirl~G-~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~   92 (288)
                      |.|+...-| ...|.+|+++||+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||+++++|+   |++||++
T Consensus        19 ~~~~~~~~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~di---G~~Ka~~   95 (426)
T d1yovb1          19 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKAEV   95 (426)
T ss_dssp             TCCTTCCCCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGT---TSBHHHH
T ss_pred             CcCcccccChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHc---CcHHHHH
Confidence            455544455 455788999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHhhhCCCceeeeeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhc----------CCCceEEEEeeecce
Q 023036           93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL----------SKRVAFYTVDCRDSC  162 (288)
Q Consensus        93 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~----------~~~ip~i~~~~~G~~  162 (288)
                      ++++|+++||+++|..+...+.+.+.+++++||+||+|.|+.++|..+|+.|..+          ..++|+|.+++.|+.
T Consensus        96 a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~  175 (426)
T d1yovb1          96 AAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFK  175 (426)
T ss_dssp             HHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTE
T ss_pred             HHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeE
Confidence            9999999999999999999888777899999999999999999999999999742          157899999999999


Q ss_pred             EEEEEEcCCe-eeecCCCCccceeeecCCChhhhhcCCCcCCCCCchhHH-HHHHHHHHHHHHhC----CCCCCCCcchH
Q 023036          163 GEIFVDLQNH-KYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLY-FALRVLEQFEEAEG----RSPGEISIADL  236 (288)
Q Consensus       163 G~v~~d~~~~-~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~-~~~~aL~~f~~~~~----~~P~~~~~~d~  236 (288)
                      |++++.++.. .+.+...+.. +....||.-      ...+.+ +.| .| +.+-.+..|.+...    ..+...+.+..
T Consensus       176 G~~~vi~p~~t~Cy~C~~~~~-p~~~~~p~C------Ti~~~P-~~~-~hci~~ak~l~~~~~~~~~~~~~~d~dd~~~i  246 (426)
T d1yovb1         176 GNARVILPGMTACIECTLELY-PPQVNFPMC------TIASMP-RLP-EHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHI  246 (426)
T ss_dssp             EEEEEECTTTSCCGGGGGGGS-CCCCCCCHH------HHHHCC-CSH-HHHHHHHHHTHHHHSCTTSTTCCCCTTCHHHH
T ss_pred             EEEEEECCCCCCCcCcCCCCC-CCCCCCCcc------cccCCC-CCc-hheeehhhhhcccccccccccCCCCCCCHHHH
Confidence            9999988742 2221110000 001111110      001111 111 12 12222224443331    11222233334


Q ss_pred             HHHHHHHHHHHHhcCCCc--------------------chhhhhhhHHHHHHHhhcccc
Q 023036          237 PAVLKLKKELCEANVRNF--------------------KLVFVCIIGCLVIKLQSCCTL  275 (288)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~i~~~~~~~~  275 (288)
                      +.+.+.+...+..++++.                    .+++||++++||||.++++..
T Consensus       247 ~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~  305 (426)
T d1yovb1         247 QWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI  305 (426)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCc
Confidence            455555666666665432                    267999999999999999765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.11  E-value=8.5e-06  Score=60.81  Aligned_cols=93  Identities=13%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|++++|+|+|.|.+|..-++.|..+|.. +++++++.-             .           .....+.+    -.++
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~-------------~-----------~~~~~~~~----~~i~   59 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFI-------------P-----------QFTVWANE----GMLT   59 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCC-------------H-----------HHHHHHTT----TSCE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCC-------------h-----------HHHHHHhc----CCce
Confidence            46889999999999999999999999965 999876221             0           11112211    1344


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .....+   .++.+.++++|+.++.+.+...++.+.|++  .++|+=
T Consensus        60 ~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~ilVN  101 (113)
T d1pjqa1          60 LVEGPF---DETLLDSCWLAIAATDDDTVNQRVSDAAES--RRIFCN  101 (113)
T ss_dssp             EEESSC---CGGGGTTCSEEEECCSCHHHHHHHHHHHHH--TTCEEE
T ss_pred             eeccCC---CHHHhCCCcEEeecCCCHHHHHHHHHHHHH--cCCEEE
Confidence            444443   346678999999999999998999999999  888754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.97  E-value=1.8e-05  Score=63.17  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHH--hhhCCCceeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSL--KDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l--~~lNp~v~v~~  108 (288)
                      +++|+|||+|.+|+.+|..|+..|. .++++|.+                      ..+.+.+.+.-  ....|..+...
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID----------------------AQRIKEIQDRGAIIAEGPGLAGTA   57 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC----------------------HHHHHHHHHHTSEEEESSSCCEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECC----------------------HHHHHHHHHcCCCchhhhhhhhhh
Confidence            5799999999999999999999996 68898862                      22333222211  11112222222


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      ..........+.++++|+||++.........+.++...+..+.+++
T Consensus        58 ~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv  103 (184)
T d1bg6a2          58 HPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLII  103 (184)
T ss_dssp             CCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             hhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEE
Confidence            1111112246778899999999877766666666654444455544

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.94  E-value=3.4e-05  Score=61.17  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .|.+++|+|||+|.+|..++++|...|+++++++..                      -..|++.+++.+.     ..+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR----------------------t~~ka~~l~~~~~-----~~~~   73 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR----------------------TYERAVELARDLG-----GEAV   73 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS----------------------SHHHHHHHHHHHT-----CEEC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC----------------------cHHHHHHHHHhhh-----cccc
Confidence            578999999999999999999999999999999753                      2347776666542     1221


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChh---hHHHHHHHHHhcCCCceE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT---TKKLINEKCRKLSKRVAF  153 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~---~~~~i~~~~~~~~~~ip~  153 (288)
                          .+++ ..+.+.++|+||.|+....   ....+.......+.+.|.
T Consensus        74 ----~~~~-~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~  117 (159)
T d1gpja2          74 ----RFDE-LVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPI  117 (159)
T ss_dssp             ----CGGG-HHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCE
T ss_pred             ----cchh-HHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCe
Confidence                1222 3557789999999986533   234455554431234454

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=2.9e-05  Score=62.73  Aligned_cols=83  Identities=16%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++++|+|+|+||.|..++..|...|+.+|+|++.+              .+     -..|+...++++..-.+.. +.
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~--------------~~-----~~~~~~~l~~~~~~~~~~~-~~   74 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR--------------DE-----FFDKALAFAQRVNENTDCV-VT   74 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS--------------ST-----THHHHHHHHHHHHHHSSCE-EE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc--------------hH-----HHHHHHHHHHHHHhhcCcc-eE
Confidence            3688999999999999999999999999999999852              11     2235666666666555432 22


Q ss_pred             eeecCCCC--cchhhhccCcEEEEecC
Q 023036          108 VEKGDLSS--LDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~--~~~~~~~~~dvVi~~~~  132 (288)
                      ..  ++.+  ...+.+..+|+||.|+.
T Consensus        75 ~~--~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          75 VT--DLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             EE--ETTCHHHHHHHHHTCSEEEECSS
T ss_pred             ee--ecccccchhhhhcccceeccccC
Confidence            22  2222  12345678999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00014  Score=52.03  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++|+|+|+|..|..+|+.|...|.. ++++|...-.+                 ..          .++...+.+  
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~~~-----------------~~----------~~~~~~~~~--   52 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMTPP-----------------GL----------DKLPEAVER--   52 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSSCT-----------------TG----------GGSCTTSCE--
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcCch-----------------hH----------HHHhhccce--
Confidence            5789999999999999999999999965 88888632110                 00          111222222  


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      ...   ......+.++|+||.+..-+... .+-..+++  +++|+|
T Consensus        53 ~~~---~~~~~~~~~~d~vi~SPGi~~~~-~~~~~a~~--~gi~ii   92 (93)
T d2jfga1          53 HTG---SLNDEWLMAADLIVASPGIALAH-PSLSAAAD--AGIEIV   92 (93)
T ss_dssp             EES---BCCHHHHHHCSEEEECTTSCTTS-HHHHHHHH--TTCEEE
T ss_pred             eec---ccchhhhccCCEEEECCCCCCCC-HHHHHHHH--cCCCeE
Confidence            111   12356678999999987533322 34556777  889976

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.57  E-value=9.1e-05  Score=58.24  Aligned_cols=94  Identities=9%  Similarity=-0.061  Sum_probs=59.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +++|+|+|+|.+|..+|++|+..|. +++|+|.                      ...|++.+++    -.+...+....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr----------------------~~~~a~~l~~----~~~~~~~~~~~   54 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACR----------------------TLESAKKLSA----GVQHSTPISLD   54 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEES----------------------CHHHHHHHHT----TCTTEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC----------------------ChHHHHHHHh----ccccccccccc
Confidence            5799999999999999999999998 6999986                      3335544443    33332222222


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      ........+.+...|+++.+.... ....+...|.+  .+..++
T Consensus        55 ~~~~~~~~~~i~~~~~~i~~~~~~-~~~~~~~~~~~--~~~~~~   95 (182)
T d1e5qa1          55 VNDDAALDAEVAKHDLVISLIPYT-FHATVIKSAIR--QKKHVV   95 (182)
T ss_dssp             TTCHHHHHHHHTTSSEEEECSCGG-GHHHHHHHHHH--HTCEEE
T ss_pred             ccchhhhHhhhhccceeEeeccch-hhhHHHHHHHh--hcccee
Confidence            221122355677888888776443 33444556655  555544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.51  E-value=0.00044  Score=52.34  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.+                      +.+++.+.    +..   .+.+...
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d----------------------~~~~~~~~----~~~---~~~vi~G   50 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHD-IVLIDID----------------------KDICKKAS----AEI---DALVING   50 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESC----------------------HHHHHHHH----HHC---SSEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC-cceecCC----------------------hhhhhhhh----hhh---hhhhccC
Confidence            3799999999999999999999954 9999872                      22333322    211   2334444


Q ss_pred             CCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       112 ~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      +..+   +....++++|.++.++.+.+....+...+++  .+.+-+
T Consensus        51 d~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~--~~~~~i   94 (132)
T d1lssa_          51 DCTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKS--YGINKT   94 (132)
T ss_dssp             CTTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHH--TTCCCE
T ss_pred             cccchhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHH--cCCceE
Confidence            4433   2234467899999998888877777888888  555533

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.45  E-value=0.00011  Score=57.89  Aligned_cols=76  Identities=17%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC----ce
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM----VR  105 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~----v~  105 (288)
                      ++.||.|||+|.+|+.+|-.|++.|+..+.|+|-                      .+.|++..+.-++...+.    ..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~   63 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDV----------------------VKGMPEGKALDLSHVTSVVDTNVS   63 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECS----------------------SSSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEe----------------------ccccchhHHHHHhhhccccCCeeE
Confidence            4689999999999999999999999999999984                      333555555555543221    12


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      +...     ...++.+++.|+||.+..
T Consensus        64 ~~~~-----~~~~~~~~~adiVvitag   85 (154)
T d1pzga1          64 VRAE-----YSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             EEEE-----CSHHHHHTTCSEEEECCS
T ss_pred             Eecc-----CchhhhhcCCCeEEEecc
Confidence            2211     112456789999998763

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.2e-05  Score=60.39  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc-ccccccccCCCCccccCCCcHHHHHHHHHhh---hCCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE-EAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPM  103 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~-~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~---lNp~  103 (288)
                      +|++++|+|||.|.+|.+-++.|..+|. ++|+++++.-+. ..+...+......    .... +.-...+.+   ....
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~   83 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNKDQ----PDYR-EDAKRFINPNWDPTKN   83 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGGC----------------CEEECTTCCTTSC
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhccchhhh----hhhh-hhhhhhcchhhhhccc
Confidence            4789999999999999999999999995 699997654321 1111111100000    0000 000000000   0001


Q ss_pred             ceeeeeecCCCCcc---hhhhccCcEEEEecCChhhHHHHHHHHHhc-CCCceE
Q 023036          104 VRVSVEKGDLSSLD---GEFYDKFDVVVVSCCSVTTKKLINEKCRKL-SKRVAF  153 (288)
Q Consensus       104 v~v~~~~~~~~~~~---~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~-~~~ip~  153 (288)
                      -.++.....+.+.+   .....++++|+.++++.+...+|.+.|+.. ..+||+
T Consensus        84 ~~~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~~~~~~i~V  137 (150)
T d1kyqa1          84 EIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV  137 (150)
T ss_dssp             CCSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred             cceEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHHhccCCCEE
Confidence            12333333333211   223457899999999998888899998762 135654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.37  E-value=0.00012  Score=58.50  Aligned_cols=123  Identities=14%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +++|.|||+|.+|+.+|+||...|.. ++++|.+.=...++..+..-.....   |-..++...+.+..  +++-+....
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~--~~~ii~~~~   75 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVL---GAHSLEEMVSKLKK--PRRIILLVK   75 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCE---ECSSHHHHHHHBCS--SCEEEECSC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhcccccccc---chhhhhhhhhhhcc--cceEEEecC
Confidence            57899999999999999999999985 8888864433333322211111111   22222222222111  111111111


Q ss_pred             cC--CCCc---chhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          111 GD--LSSL---DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       111 ~~--~~~~---~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ..  +.+.   ....++.-++||+++ .++...+.+.+.+.+  .++.++++...|.
T Consensus        76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~--~g~~~ldapvsGg  130 (176)
T d2pgda2          76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD--KGILFVGSGVSGG  130 (176)
T ss_dssp             TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESH
T ss_pred             chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHh--cCCceeccccccC
Confidence            11  0000   112334456777765 467777888899988  9999999888874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=0.00018  Score=57.18  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++|+|+|+||.+..++..|...|+++|+|++.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5789999999999999999999999999999754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.0003  Score=54.78  Aligned_cols=95  Identities=12%  Similarity=0.059  Sum_probs=59.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .||+|+|+|++|+.++..|+.+|. .++++|.+.-....+..   ...+     +                ........ 
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~---~~~~-----~----------------~~~~~~~~-   54 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL---VETD-----G----------------SIFNESLT-   54 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE---ECTT-----S----------------CEEEEEEE-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc---ccCC-----c----------------cccccccc-
Confidence            379999999999999999999996 59999875432222110   0000     0                00001111 


Q ss_pred             CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                         ....+....+|+||+++-.......+..+....+.+.+++.
T Consensus        55 ---~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          55 ---ANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             ---ESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ---cchhhhhcccceEEEeecccchHHHHHhhccccCcccEEee
Confidence               12345667899999999887777777666654334455554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.00018  Score=56.69  Aligned_cols=113  Identities=17%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      .+|.+||+|-+|+.+|+||+..|. ++.++|.+.-..+++...           |........+.+..-  ++-+.....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~e~~~~~--diii~~v~~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA-----------GASAARSARDAVQGA--DVVISMLPA   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT-----------TCEECSSHHHHHTSC--SEEEECCSC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh-----------hccccchhhhhcccc--Ceeeecccc
Confidence            369999999999999999999997 588988653333332211           111111112222211  111222111


Q ss_pred             CC--C------CcchhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          112 DL--S------SLDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       112 ~~--~------~~~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ..  .      ......+..=++||+++ .+++....+.+.+++  +++.|+.+...|
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~--~gi~~~dapv~G  123 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSG  123 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEES
T ss_pred             hhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCcEEeccccc
Confidence            10  0      00122334446777765 467888899999999  999999988877

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00027  Score=56.13  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++|+|+|+||.+..++..|...|+ +|+|+..                      -..|++.+++.+.+.++   +..
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nR----------------------t~~ka~~l~~~~~~~~~---~~~   69 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNR----------------------TVSRAEELAKLFAHTGS---IQA   69 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS----------------------SHHHHHHHHHHTGGGSS---EEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEeccc----------------------hHHHHHHHHHHHhhccc---ccc
Confidence            568899999999999999999999998 5999753                      34578888888777653   222


Q ss_pred             eecCCCCcchhhhccCcEEEEecC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..  +   .......+|+||.|+.
T Consensus        70 ~~--~---~~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          70 LS--M---DELEGHEFDLIINATS   88 (170)
T ss_dssp             CC--S---GGGTTCCCSEEEECCS
T ss_pred             cc--c---ccccccccceeecccc
Confidence            21  1   1122357899999874

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00051  Score=58.12  Aligned_cols=84  Identities=17%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             HHHHHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036           25 AQRRLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (288)
Q Consensus        25 ~q~~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~  103 (288)
                      ++++|+++.|+|.|++ |+|.++|+.|+..|. ++.++|.                      ...+.+.+++.+++.++.
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r----------------------~~~~l~~~~~~l~~~~~~   60 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCAR----------------------TVGNIEELAAECKSAGYP   60 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCCC
Confidence            4678999999999954 899999999999997 5888775                      334778888899988877


Q ss_pred             ceeeeeecCCCCc---------chhhhccCcEEEEec
Q 023036          104 VRVSVEKGDLSSL---------DGEFYDKFDVVVVSC  131 (288)
Q Consensus       104 v~v~~~~~~~~~~---------~~~~~~~~dvVi~~~  131 (288)
                      .++..+..++.+.         ..+-+...|++|.+.
T Consensus        61 ~~~~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          61 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA   97 (257)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             ceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence            7777777776542         122245677777654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.12  E-value=0.0012  Score=51.50  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      ||.|||+|.+|+.+|++|...|. +++.+|.+                      +.+++    ++.+...   +....  
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~----------------------~~~~~----~a~~~~~---~~~~~--   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ----------------------QSTCE----KAVERQL---VDEAG--   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC----------------------HHHHH----HHHHTTS---CSEEE--
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECC----------------------chHHH----HHHHhhc---cceee--
Confidence            69999999999999999999996 47777752                      11112    2222221   11111  


Q ss_pred             CCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       113 ~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                         ...+.++++|+||.|.........++++....+.+..++.
T Consensus        50 ---~~~~~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          50 ---QDLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             ---SCGGGGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ---eecccccccccccccCcHhhhhhhhhhhhhhcccccceee
Confidence               1235678999999998655555566666544334444443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.10  E-value=0.00045  Score=53.93  Aligned_cols=74  Identities=22%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC----CCcee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRV  106 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN----p~v~v  106 (288)
                      +.||.|||+|.+|+.+|-.|++.++.++.|+|-                      -..|++..+.-++...    ....+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~v   60 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI----------------------VKNMPHGKALDTSHTNVMAYSNCKV   60 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS----------------------SSSHHHHHHHHHHTHHHHHTCCCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec----------------------cCCcceeeecchhhhccccCCCcEE
Confidence            478999999999999999999999999999994                      2234555555555432    22223


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...      .+.+.+++.|+||.+..
T Consensus        61 ~~~------~~~~~~~~advvvitag   80 (150)
T d1t2da1          61 SGS------NTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             EEE------CCGGGGTTCSEEEECCS
T ss_pred             Eec------ccccccCCCcEEEEecc
Confidence            222      12456788999998865

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.09  E-value=0.0012  Score=51.63  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      +|+|||+|-+|+.+|++|...|.. +|+.+|.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            699999999999999999999974 6777775

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00041  Score=54.75  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      .++...+|.|||+|.+|+.+|-.|+..|.. ++.|+|.                      ...|++..+.-|+..-+...
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~----------------------~~~~a~g~alDl~~~~~~~~   72 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDA----------------------DTDKLRGEALDLQHGSLFLS   72 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS----------------------CHHHHHHHHHHHHHTTTTCS
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CchhhhccHHHHhCcchhcC
Confidence            357788999999999999999999999985 6999985                      33355555555554332222


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ......   ..+.+.+++.|+||++..
T Consensus        73 ~~~~~~---~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          73 TPKIVF---GKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CCEEEE---ESSGGGGTTEEEEEECCS
T ss_pred             CCeEEe---ccchhhhccccEEEEecc
Confidence            111110   112455688999988753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.03  E-value=0.00074  Score=52.85  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|.|||+|-+|..+|+||+..|.. ++++|.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            699999999999999999999975 8888763

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.97  E-value=0.00064  Score=52.71  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh----CCCcee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF----NPMVRV  106 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l----Np~v~v  106 (288)
                      ||.|||+ |.+|+.+|-.|+..|+ +++.|+|-+               .     +..|++..+.-|...    .+.+++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~---------------~-----~~~~~~g~a~Dl~~~~~~~~~~~~~   61 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE---------------H-----SINKLEGLREDIYDALAGTRSDANI   61 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG---------------G-----GHHHHHHHHHHHHHHHTTSCCCCEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch---------------h-----hhHhhhcccccchhcccccccCCcc
Confidence            6999996 9999999999999995 799999861               1     345666666666653    333444


Q ss_pred             eeeecCCCCcchhhhccCcEEEEec
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      .....+    +.+.+++.|+||.|.
T Consensus        62 ~~~~~~----d~~~l~~aDvVVitA   82 (145)
T d1hyea1          62 YVESDE----NLRIIDESDVVIITS   82 (145)
T ss_dssp             EEEETT----CGGGGTTCSEEEECC
T ss_pred             ccCCcc----hHHHhccceEEEEec
Confidence            443321    345678999999985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.0022  Score=48.07  Aligned_cols=94  Identities=12%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      ++++|+|+|.+|..+++.|...|.. ++++|.+.-                      +    .+.+++...    .+...
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~----------------------~----~~~~~~~~~----~~~~g   49 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEE----------------------K----VNAYASYAT----HAVIA   49 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHH----------------------H----HHHTTTTCS----EEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHH----------------------H----HHHHHHhCC----cceee
Confidence            4789999999999999999999976 888886221                      1    222333222    12222


Q ss_pred             CCCC---cchhhhccCcEEEEecCC-hhhHHHHHHHHHhcCCCceEEEEee
Q 023036          112 DLSS---LDGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       112 ~~~~---~~~~~~~~~dvVi~~~~~-~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                      +..+   +...-+.++|.||++..+ ......+....+.  .+.+-+.+.+
T Consensus        50 d~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~--~~~~~iiar~   98 (134)
T d2hmva1          50 NATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKE--LDIPNIWVKA   98 (134)
T ss_dssp             CTTCTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred             ecccchhhhccCCccccEEEEEcCchHHhHHHHHHHHHH--cCCCcEEeec
Confidence            2222   223447789988887754 4444455555555  5555554443

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.92  E-value=0.0014  Score=51.56  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=53.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .+.+.||.|||+|.+|+.+|-.|+..|+ .++.|+|-                      .+.+++.-+.-|+...+....
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~----------------------~~~~a~g~alDl~h~~~~~~~   74 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDV----------------------LEDKLKGEMMDLQHGSLFLQT   74 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGCCC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe----------------------ccchhHHHHHHHhccccccCC
Confidence            4567899999999999999999999998 67999985                      233454445555542221111


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .....   ..+.+.+++.|+||.+..
T Consensus        75 ~~~~~---~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          75 PKIVA---DKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             SEEEE---CSSGGGGTTCSEEEECCS
T ss_pred             CeEEe---ccchhhcccccEEEEecC
Confidence            11110   113456789999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.00093  Score=53.03  Aligned_cols=74  Identities=11%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+++++|+|+|+||.+-.++..|.. |..+|+|+..                      -..|++.+++.+....+   +.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR----------------------~~~~a~~l~~~~~~~~~---~~   68 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANR----------------------TFSKTKELAERFQPYGN---IQ   68 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEES----------------------SHHHHHHHHHHHGGGSC---EE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccc----------------------hHHHHHHHHHHHhhccc---cc
Confidence            3578899999999999999999986 6689999753                      33478888888876553   33


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ....+     ...+.++|+||.|+.
T Consensus        69 ~~~~~-----~~~~~~~diiIN~tp   88 (171)
T d1p77a1          69 AVSMD-----SIPLQTYDLVINATS   88 (171)
T ss_dssp             EEEGG-----GCCCSCCSEEEECCC
T ss_pred             hhhhc-----cccccccceeeeccc
Confidence            32211     122468999999974

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.91  E-value=0.0014  Score=50.82  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC--Cceee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP--MVRVS  107 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp--~v~v~  107 (288)
                      .+||.|||+|.+|+.+|-.|+..|. .++.|+|-                      .+.|++..+.-|++.-+  .....
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~~~g~~~Dl~~a~~~~~~~~~   58 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA----------------------NEAKVKADQIDFQDAMANLEAHGN   58 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHGGGSSSCCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEec----------------------ccchhhhHHHhhhccccccCCccc
Confidence            4689999999999999999999995 68999884                      22344444444443322  12222


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ....     +.+.+++.|+||.+..
T Consensus        59 ~~~~-----d~~~l~~adiVVitaG   78 (146)
T d1hyha1          59 IVIN-----DWAALADADVVISTLG   78 (146)
T ss_dssp             EEES-----CGGGGTTCSEEEECCS
T ss_pred             eecc-----CHHHhccccEEEEecc
Confidence            2222     2345789999998854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.0021  Score=49.72  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=51.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc--ee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RV  106 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v--~v  106 (288)
                      ..+||.|||+|.+|+.+|-.|+..|. .++.|+|-                      -+.|++..+.-|....+..  .+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~   62 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA----------------------NESKAIGDAMDFNHGKVFAPKPV   62 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHTTSSSSCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee----------------------ccccccchhccHhhCccccCCCe
Confidence            46789999999999999999999997 57999984                      2223444444455433222  12


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .....     +.+.+++.|+||.+..
T Consensus        63 ~~~~~-----d~~~l~daDvvvitag   83 (148)
T d1ldna1          63 DIWHG-----DYDDCRDADLVVICAG   83 (148)
T ss_dssp             EEEEC-----CGGGTTTCSEEEECCS
T ss_pred             EEEEC-----CHHHhccceeEEEecc
Confidence            22222     2456788999998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0098  Score=45.51  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +-||+|+|+|.+|..+++.|...|.. ++++|.+.                      .+.....+.+.  .+  .+.+..
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~----------------------~~~~~~~~~~~--~~--~~~vi~   55 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLP----------------------EDDIKQLEQRL--GD--NADVIP   55 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCC----------------------HHHHHHHHHHH--CT--TCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccc----------------------hhHHHHHHHhh--cC--CcEEEE
Confidence            56899999999999999999999976 78887621                      11111122222  12  234444


Q ss_pred             cCCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhc
Q 023036          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL  147 (288)
Q Consensus       111 ~~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~  147 (288)
                      .+..+   +...-+++++.||.++++......+...+++.
T Consensus        56 Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~   95 (153)
T d1id1a_          56 GDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             SCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHh
Confidence            44433   12344678999999988877777777777774

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00071  Score=54.32  Aligned_cols=92  Identities=17%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc----HHHHHHHHHhhhCCCc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT----IAEVCCDSLKDFNPMV  104 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~----Ka~~~~~~l~~lNp~v  104 (288)
                      -..++|+|||.|..|.+.|..|++.|. +++|+|...    .++.++.+...--   ++.    -.+...+.+++++  |
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~----~~GG~l~~~~~~p---~~~~~~~~~~~~~~~~~~~g--V  110 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS----EIGGQFNIAKQIP---GKEEFYETLRYYRRMIEVTG--V  110 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS----SSCTTHHHHTTST---TCTTHHHHHHHHHHHHHHHT--C
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC----ccCceEEEEEeCc---ccchHHHHHHHHHHhhhcCC--e
Confidence            457899999999999999999999995 699999743    3444432211111   222    2344455555554  3


Q ss_pred             eeeeeecCCCCcchhhhccCcEEEEecCCh
Q 023036          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (288)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~~~  134 (288)
                      ++..-. .+   +.+...+||.||+++...
T Consensus       111 ~i~l~~-~V---t~~~~~~~d~vilAtG~~  136 (179)
T d1ps9a3         111 TLKLNH-TV---TADQLQAFDETILASGIP  136 (179)
T ss_dssp             EEEESC-CC---CSSSSCCSSEEEECCCEE
T ss_pred             EEEeCC-EE---cccccccceeEEEeecCC
Confidence            433211 11   234567899999988643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.80  E-value=0.0034  Score=48.37  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=27.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.+||+|-+|..++++|..+|-.++.++|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            6999999999999999999999777877765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.80  E-value=0.003  Score=48.75  Aligned_cols=34  Identities=9%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      .+.||.|||+|.+|+.+|..|+..|+ .++.|+|-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeec
Confidence            46699999999999999999999996 68999984

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.80  E-value=0.0031  Score=46.89  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=41.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      .++|+|||.|.+|.|+|..|...|. ++||++...        +++-+.  .   ++.-++.+.+.+++.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~--------~~l~~~--~---~~~~~~~~~~~l~~~G   86 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP--------RLMSRA--A---PATLADFVARYHAAQG   86 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS--------STTTTT--S---CHHHHHHHHHHHHTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc--------cccccc--C---CHHHHHHHHHHHHHCC
Confidence            5799999999999999999999995 499998622        112111  2   4455667777777764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.72  E-value=0.0014  Score=52.62  Aligned_cols=80  Identities=13%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        27 ~~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ..|++++|+|.| .||+|.++++.|+..|. +++++|.                      ...|.+.+++.+.+.. .+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r----------------------~~~~~~~~~~~~~~~~-~~~   74 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGR----------------------KLDKAQAAADSVNKRF-KVN   74 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------SHHHHHHHHHHHHHHH-TCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhccc----------------------chHHHHHHHHHHHhcc-chh
Confidence            357999999999 68999999999999996 6888875                      2335566666665532 223


Q ss_pred             eeeeecCCCC--cchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSS--LDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~--~~~~~~~~~dvVi~~~~  132 (288)
                      +.  ..++.+  ...+.+.+.|+||.+..
T Consensus        75 ~~--~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          75 VT--AAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             CE--EEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             hh--hhhcccHHHHHHHhcCcCeeeecCc
Confidence            22  222222  23567889999998753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.72  E-value=0.0016  Score=51.49  Aligned_cols=120  Identities=10%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccC---CC-CccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI---PP-DENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~---~~-~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+|.|||+|-.|+.+|++|+..|.. +.++|.+.-....+......   .. ...   .. ..+   ..+..+.....+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKA---FE-TME---AFAASLKKPRKAL   73 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEE---CS-CHH---HHHHHBCSSCEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhh---hh-hhh---HHHHhcccceEEE
Confidence            4799999999999999999999976 88888643222222111100   00 000   11 111   1112222111111


Q ss_pred             eeecCCC------CcchhhhccCcEEEEec-CChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          108 VEKGDLS------SLDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       108 ~~~~~~~------~~~~~~~~~~dvVi~~~-~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .....-.      ......++.-+++++++ .+++....+.+.+.+  .++-|+.+...|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~--~~~~~ldapv~g~  132 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEA--AGLRFLGMGISGG  132 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHT--TTCEEEEEEEESH
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhh--cceeEecccccCC
Confidence            1111100      01122345556777765 456777788888888  8999999888773

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.72  E-value=0.0029  Score=48.77  Aligned_cols=75  Identities=20%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +||.|||+ |.+|+.+|-.|+..|+ +++.|+|-                      .+.|+++  ..+...-+.......
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi----------------------~~~~~~a--~Dl~~~~~~~~~~~~   56 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI----------------------AHTPGVA--ADLSHIETRATVKGY   56 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES----------------------SSHHHHH--HHHTTSSSSCEEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEec----------------------cccchhh--HHHhhhhhhcCCCeE
Confidence            68999996 9999999999999998 88999984                      2223332  333333222222222


Q ss_pred             ecCCCCcchhhhccCcEEEEecC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..  .....+.+++.|+||.+..
T Consensus        57 ~~--~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1          57 LG--PEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             ES--GGGHHHHHTTCSEEEECCS
T ss_pred             Ec--CCChHHHhCCCCEEEECCC
Confidence            11  1123566889999998854

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.72  E-value=0.00077  Score=53.60  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|+|+|++|.-.+.-+-..|..++..+|.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~   60 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS   60 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence            5778999999999999999999999999999986

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.66  E-value=0.004  Score=47.89  Aligned_cols=30  Identities=10%  Similarity=0.140  Sum_probs=25.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||.|||+|-+|+.++++|...|.. ++++|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~   31 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLE   31 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcC
Confidence            799999999999999999999964 566554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.66  E-value=0.0072  Score=46.22  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+|.|||+|.+|+.+|-.|+..|+..+.++|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEee
Confidence            58999999999999999999999999999985

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.63  E-value=0.0029  Score=48.66  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh---CCCceee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF---NPMVRVS  107 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l---Np~v~v~  107 (288)
                      +||.|||+|.+|+.+|-.|++.|+ .++.|+|-                      .+.|++.-+.-|+..   .+...+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~----------------------~~~~~~g~a~Dl~~a~~~~~~~~i~   59 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI----------------------AKERVEAEVLDMQHGSSFYPTVSID   59 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------SHHHHHHHHHHHHHTGGGSTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe----------------------ccccchhHHHHHHhccccCCCceee
Confidence            579999999999999999999998 47999884                      222344433344443   3333332


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .. .     +.+.+++.|+||.+..
T Consensus        60 ~~-~-----~~~~~~daDvVVitaG   78 (143)
T d1llda1          60 GS-D-----DPEICRDADMVVITAG   78 (143)
T ss_dssp             EE-S-----CGGGGTTCSEEEECCC
T ss_pred             cC-C-----CHHHhhCCcEEEEecc
Confidence            21 1     2345778999999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.59  E-value=0.001  Score=52.85  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ++++++|+|+|+||++..++..|  .+.++|+|+..                      -..|++.+++.+....+.-.+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR----------------------~~~ka~~l~~~~~~~~~~~~~~   70 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANR----------------------TVEKAEALAKEIAEKLNKKFGE   70 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECS----------------------SHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeehh----------------------hhhHHHHHHHHHHHhhchhhhh
Confidence            47999999999999999988776  56778988754                      3357888888777654332211


Q ss_pred             ee-ecCCCCcchhhhccCcEEEEecC
Q 023036          108 VE-KGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .. ...+    ......+|+||.|+.
T Consensus        71 ~~~~~~~----~~~~~~~dliIn~tp   92 (177)
T d1nvta1          71 EVKFSGL----DVDLDGVDIIINATP   92 (177)
T ss_dssp             HEEEECT----TCCCTTCCEEEECSC
T ss_pred             hhhhhhh----hhccchhhhhccCCc
Confidence            11 1111    223457899999874

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.53  E-value=0.0036  Score=47.88  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=28.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ||.|||+|.+|+.++-.|+..|. .++.|+|-
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di   33 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDV   33 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecc
Confidence            69999999999999999999996 68999984

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.0085  Score=45.83  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=48.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh----hCCCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~----lNp~v~v~  107 (288)
                      ||.|||+|.+|+.+|-.|+..|. .++.|+|-                      .+.|++.-+.-|+.    .....++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~~~g~alDl~~~~~~~~~~~~i~   59 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI----------------------AEDLAVGEAMDLAHAAAGIDKYPKIV   59 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS----------------------SHHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEec----------------------ccchhhHHHHHHhhhccccCCCCccc
Confidence            79999999999999999999987 78999983                      23344443334443    22222333


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ...      +.+.+++.|+||.+..
T Consensus        60 ~~~------d~~~~~~adiVvitag   78 (142)
T d1ojua1          60 GGA------DYSLLKGSEIIVVTAG   78 (142)
T ss_dssp             EES------CGGGGTTCSEEEECCC
T ss_pred             cCC------CHHHhccccEEEEecc
Confidence            221      2357789999998764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0056  Score=46.71  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~   63 (288)
                      ||.|||+|.+|+.++-.|+..|. .++.|+|-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            79999999999999999999998 57999884

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.39  E-value=0.0016  Score=51.40  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=32.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..+||+|||+|..|.++|..|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            46899999999999999999999999889999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.33  E-value=0.0062  Score=46.65  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~   63 (288)
                      .||.|||+|.+|+.++-.|+..|.. ++.|+|-
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEec
Confidence            5899999999999999999999984 6999994

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.33  E-value=0.0055  Score=51.47  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      ||+++.++|-|+ +|+|.++|+.|+..|. ++.++|.                      ...+.+.+.+.+.+..+..++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r----------------------~~~~l~~~~~~~~~~~~~~~~   57 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV----------------------SSEGLEASKAAVLETAPDAEV   57 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhhCCCCeE
Confidence            578999999985 4899999999999996 4888874                      233556667777777777677


Q ss_pred             eeeecCCCCcc---------hhhhccCcEEEEe
Q 023036          107 SVEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       107 ~~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      .....++.+..         .+.+...|++|.+
T Consensus        58 ~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          58 LTTVADVSDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             EEEeccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            66666665421         2224556777654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.32  E-value=0.013  Score=46.15  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+||+|.-.+..+...|..+|..+|.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~   62 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL   62 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecC
Confidence            3667999999999999999999999999999996

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0062  Score=47.56  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=57.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|+|+|+|++|.-.+..+...|..++.++|.                      ...|.+.+    +++..+..+....
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~----------------------~~~rl~~a----~~~Ga~~~~~~~~   80 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL----------------------SATRLSKA----KEIGADLVLQISK   80 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES----------------------CHHHHHHH----HHTTCSEEEECSS
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccC----------------------CHHHHHHH----HHhCCcccccccc
Confidence            578999999999999999999999999999986                      22233322    3333322222211


Q ss_pred             cCCCCc----chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          111 GDLSSL----DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       111 ~~~~~~----~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .+..+.    ....=.++|+||.|+.+.......-++++.
T Consensus        81 ~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~  120 (171)
T d1pl8a2          81 ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRS  120 (171)
T ss_dssp             CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCT
T ss_pred             cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcC
Confidence            111110    111224789999999887766666666655

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.28  E-value=0.0086  Score=45.86  Aligned_cols=74  Identities=20%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh---hCCCcee
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVRV  106 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~---lNp~v~v  106 (288)
                      +||.|+| +|.+|+.+|-.|+..|+. ++.|+|-+.                    .+.+++..+.-|..   .++..++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~--------------------~~~~~~g~a~Dl~~~~~~~~~~~i   60 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD--------------------KEDDTVGQAADTNHGIAYDSNTRV   60 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG--------------------GHHHHHHHHHHHHHHHTTTCCCEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC--------------------cccccceeecchhhcccccCCceE
Confidence            5899999 699999999999999985 688888410                    22344444444543   3333333


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .  ..     +.+.+++.|+||.+..
T Consensus        61 ~--~~-----~~~~~~~aDiVvitaG   79 (142)
T d1o6za1          61 R--QG-----GYEDTAGSDVVVITAG   79 (142)
T ss_dssp             E--EC-----CGGGGTTCSEEEECCC
T ss_pred             e--eC-----CHHHhhhcCEEEEecc
Confidence            2  22     2345689999998854

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.26  E-value=0.017  Score=45.58  Aligned_cols=101  Identities=10%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhh--hCCCceeeeee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNPMVRVSVEK  110 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~--lNp~v~v~~~~  110 (288)
                      +|.|+|+|..|+.+|..|+..|. .++|+..+                        .-+...+.+++  .||........
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~------------------------~~~~~~~~i~~~~~~~~~~~~~~~   56 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTE------------------------FDTEILKSISAGREHPRLGVKLNG   56 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCG------------------------GGHHHHHHHHTTCCBTTTTBCCCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEec------------------------ccHHHHHHHhhhhhhhhhcchhcc
Confidence            79999999999999999999984 57776320                        00011222222  12222111111


Q ss_pred             c--CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          111 G--DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       111 ~--~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      .  .......+.++++|+||.+.-+...+..+.++..-. .+.+++. .+-|
T Consensus        57 ~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l-~~~~ii~-~tkg  106 (180)
T d1txga2          57 VEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYL-KDQYIVL-ISKG  106 (180)
T ss_dssp             EEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTC-CSCEEEE-CCCS
T ss_pred             ccccccccHHHHHhccchhhcccchhhhHHHHHhhcccc-ccceecc-cccC
Confidence            0  111224567889999999987766666665544321 3344444 3444

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.0042  Score=48.03  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=28.8

Q ss_pred             cCcEEEEe-cCChhhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          123 KFDVVVVS-CCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       123 ~~dvVi~~-~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      .-.++|++ +.+++...++.+.+.+  +++.|+++...|.
T Consensus        81 ~~~~iid~sT~~p~~~~~~~~~~~~--~gi~~ldapVsGg  118 (156)
T d2cvza2          81 EGTYWVDATSGEPEASRRLAERLRE--KGVTYLDAPVSGG  118 (156)
T ss_dssp             TTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESH
T ss_pred             ccccccccccCCHHHHHHHHHHHHH--cCCeEEeccccCc
Confidence            34455554 4577888899999988  9999999988874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.002  Score=51.05  Aligned_cols=34  Identities=6%  Similarity=-0.044  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|.-++.-+-..|..++.++|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccc
Confidence            3588999999999999999999999999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.10  E-value=0.014  Score=44.41  Aligned_cols=33  Identities=15%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -++|.||| +|.+|..+|+||...|.. ++++|.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~   42 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYP-ISILDRE   42 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTT
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccc
Confidence            36899999 999999999999999985 8898864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.06  E-value=0.02  Score=44.90  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|.-.+..+...|..++..+|.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~   60 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT   60 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCC
Confidence            3567999999999999999999999999999986

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.03  E-value=0.0084  Score=50.30  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +||+++.++|-|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r   37 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDM   37 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4789999999995 5899999999999996 4888875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.93  E-value=0.025  Score=43.73  Aligned_cols=90  Identities=11%  Similarity=-0.014  Sum_probs=55.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      .+.+|+|+|+|++|.-++..+...|. ++.++|.                      ...|.    +.++++.....+...
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~----------------------~~~r~----~~a~~~ga~~~~~~~   78 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTAR----------------------SPRRL----EVAKNCGADVTLVVD   78 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHH----HHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccch----------------------HHHHH----HHHHHcCCcEEEecc
Confidence            46789999999999999999999997 6888885                      22232    233334433222221


Q ss_pred             ecCCCCc------chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          110 KGDLSSL------DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       110 ~~~~~~~------~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      ....+..      ....-.++|+||.|..+.......-+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~  121 (170)
T d1e3ja2          79 PAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT  121 (170)
T ss_dssp             TTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCT
T ss_pred             ccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhc
Confidence            1111100      011124689999999887766655566655

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.92  E-value=0.017  Score=41.07  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             hcCcEEEEcCchHH-HHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTV-AEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglG-seiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +.++|.++|.||+| +.+|+.|...|.. ++-.|..        .      .           ...+.|.+..  +.+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~--------~------~-----------~~~~~L~~~G--i~v~~   58 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIA--------D------G-----------VVTQRLAQAG--AKIYI   58 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESC--------C------S-----------HHHHHHHHTT--CEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCC--------C------C-----------hhhhHHHHCC--CeEEE
Confidence            46789999999999 6669999999974 7766641        1      1           1135556654  33332


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .      ...+.+.+.|+||.+..-.+..-.+ ..|++  +++|++
T Consensus        59 g------~~~~~i~~~d~vV~S~AI~~~npel-~~A~~--~gipii   95 (96)
T d1p3da1          59 G------HAEEHIEGASVVVVSSAIKDDNPEL-VTSKQ--KRIPVI   95 (96)
T ss_dssp             S------CCGGGGTTCSEEEECTTSCTTCHHH-HHHHH--TTCCEE
T ss_pred             C------CccccCCCCCEEEECCCcCCCCHHH-HHHHH--cCCCEE
Confidence            1      1234467889999887533332233 35778  899986

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.021  Score=45.49  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .-+||+|.|+ |.+|+.+++.|...|. ++++++.+.-...          . .   .              .+  .++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~----------~-~---~--------------~~--~~~~   50 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLP----------S-E---G--------------PR--PAHV   50 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSC----------S-S---S--------------CC--CSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcc----------c-c---c--------------cc--cccc
Confidence            4578999995 6799999999999995 5888764211100          0 0   0              01  2344


Q ss_pred             eecCCCCcc--hhhhccCcEEEEecCCh----------hhHHHHHHHHHhcCCCce-EEEEeeecc
Q 023036          109 EKGDLSSLD--GEFYDKFDVVVVSCCSV----------TTKKLINEKCRKLSKRVA-FYTVDCRDS  161 (288)
Q Consensus       109 ~~~~~~~~~--~~~~~~~dvVi~~~~~~----------~~~~~i~~~~~~~~~~ip-~i~~~~~G~  161 (288)
                      ...++.+..  .+.++++|+||.+....          .....+-+.+++  ++++ ||..++.|.
T Consensus        51 ~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~--~~v~r~i~~ss~~~  114 (205)
T d1hdoa_          51 VVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA--HGVDKVVACTSAFL  114 (205)
T ss_dssp             EESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHH--HTCCEEEEECCGGG
T ss_pred             ccccccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHh--cCCCeEEEEeeeec
Confidence            555555432  45578889888875321          112345556666  5654 566555543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.81  E-value=0.027  Score=43.83  Aligned_cols=90  Identities=13%  Similarity=0.008  Sum_probs=55.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      ..+|+|+|+||+|.-.+..+...|..++..+|.                      ...|.+.+.    ++--.-.+....
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~----------------------~~~k~~~a~----~~Ga~~~i~~~~   82 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI----------------------NKDKFAKAK----EVGATECVNPQD   82 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS----------------------CGGGHHHHH----HTTCSEEECGGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecC----------------------cHHHHHHHH----HhCCeeEEecCC
Confidence            357999999999999999999999999999886                      333433332    222111121111


Q ss_pred             cC-CCCc--chhhhccCcEEEEecCChhhHHHHHHHHHh
Q 023036          111 GD-LSSL--DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (288)
Q Consensus       111 ~~-~~~~--~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~  146 (288)
                      .+ ....  ....-.++|+||.+.............++.
T Consensus        83 ~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~  121 (176)
T d2jhfa2          83 YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE  121 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT
T ss_pred             chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhc
Confidence            11 0000  011124799999999887766655556544

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.80  E-value=0.012  Score=49.49  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CCce
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~v~  105 (288)
                      ||+++.++|.|+ +|+|.++|+.|+..|. ++.++|.                      ...+.+.+++.+++.. +..+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r----------------------~~~~l~~~~~~l~~~~~~~~~   58 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGR----------------------SSERLEETRQIILKSGVSEKQ   58 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHTTTCCGGG
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCCCCCc
Confidence            688999999985 5899999999999997 5999885                      2234555566665553 2334


Q ss_pred             eeeeecCCCCcc---------hhhhccCcEEEEe
Q 023036          106 VSVEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       106 v~~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      +..+..++.+..         .+.+...|++|.+
T Consensus        59 ~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnn   92 (272)
T d1xkqa_          59 VNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNN   92 (272)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHhCCceEEEeC
Confidence            555555554311         1223456776654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.77  E-value=0.015  Score=44.65  Aligned_cols=66  Identities=12%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeecC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~~  112 (288)
                      ||.|||+|-+|+.+++.|..+| .++++.|.                      ...|++.+++.+   .    +...   
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~-~~i~v~~r----------------------~~~~~~~l~~~~---g----~~~~---   48 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTP-HELIISGS----------------------SLERSKEIAEQL---A----LPYA---   48 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSS-CEEEEECS----------------------SHHHHHHHHHHH---T----CCBC---
T ss_pred             EEEEEeccHHHHHHHHHHHhCC-CeEEEEcC----------------------hHHhHHhhcccc---c----eeee---
Confidence            6999999999999999998876 45666553                      222444443332   1    1111   


Q ss_pred             CCCcchhhhccCcEEEEecCC
Q 023036          113 LSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       113 ~~~~~~~~~~~~dvVi~~~~~  133 (288)
                        ....+..++.|+||.|..+
T Consensus        49 --~~~~~~~~~~dvIilavkp   67 (152)
T d2ahra2          49 --MSHQDLIDQVDLVILGIKP   67 (152)
T ss_dssp             --SSHHHHHHTCSEEEECSCG
T ss_pred             --chhhhhhhccceeeeecch
Confidence              1245667899999999854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.75  E-value=0.016  Score=46.39  Aligned_cols=31  Identities=6%  Similarity=-0.011  Sum_probs=27.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .||+|+|+|..|+.+|..|+..|- .++|++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r   38 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHM   38 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEe
Confidence            579999999999999999999984 6888765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.73  E-value=0.016  Score=46.79  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=29.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d   64 (288)
                      -||+|||+|..|...|..|.++|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999876 79999874

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.72  E-value=0.01  Score=50.17  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCC-Cce
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp-~v~  105 (288)
                      ||++++++|-|+ +|+|.++|+.|+..|.. +.++|.                      ...+.+.+++.+.+.+. ..+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~l~~~~~~i~~~~~~~~~   57 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGR----------------------NEDRLEETKQQILKAGVPAEK   57 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHcCCCCcc
Confidence            578999999985 58999999999999974 888875                      33355666677766642 345


Q ss_pred             eeeeecCCCCcc---------hhhhccCcEEEEe
Q 023036          106 VSVEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       106 v~~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      +..+..++.+..         .+.+...|++|.+
T Consensus        58 ~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   91 (274)
T d1xhla_          58 INAVVADVTEASGQDDIINTTLAKFGKIDILVNN   91 (274)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             eEEEEeeCCCHHHHHHHHHHHHHHcCCceEEEee
Confidence            666666655421         2223456777765

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.04  Score=44.73  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gv-g~i~lvD~d   64 (288)
                      +|++++|+|.|+ |-+|+++++.|...|. .+++++..+
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~   49 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   49 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            588999999995 5699999999999985 588888753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.65  E-value=0.0064  Score=47.77  Aligned_cols=34  Identities=12%  Similarity=0.073  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|+|+|++|.-++..+...|...+.+.|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4668999999999999999999999999988875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.63  E-value=0.034  Score=43.62  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.+|+|+|+|++|.-.+.-+-..|.+.+.+.|.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~   61 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeecc
Confidence            478999999999999999999999999999886

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.58  E-value=0.017  Score=48.32  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=55.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CCce
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~v~  105 (288)
                      ||+++.++|.|+ +|+|.++|+.|+..|. ++.++|.                      ...+.+.+++.|++.. +..+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r----------------------~~~~l~~~~~~l~~~~~~~~~   58 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGR----------------------HAERLEETRQQILAAGVSEQN   58 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCCCcCc
Confidence            688999999884 6999999999999997 4888875                      2335566677776664 3335


Q ss_pred             eeeeecCCCCcc---------hhhhccCcEEEEe
Q 023036          106 VSVEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       106 v~~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      +..+..++.+..         .+.+...|++|.+
T Consensus        59 ~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnn   92 (264)
T d1spxa_          59 VNSVVADVTTDAGQDEILSTTLGKFGKLDILVNN   92 (264)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHhCCCCEeecc
Confidence            666666665321         2224567777765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.57  E-value=0.012  Score=43.35  Aligned_cols=32  Identities=16%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++|+|||.|.+|.|+|..|...|.. +||++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID-SYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc-ceeeeh
Confidence            36899999999999999999999965 999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.50  E-value=0.0071  Score=51.07  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      .+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.33  E-value=0.067  Score=41.21  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+||+|.-.+..+..+|...+..+|.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            3567999999999999999999999998988875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.034  Score=47.42  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+++.++|.|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r   44 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASR   44 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            689999999995 5899999999999997 4888874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.29  E-value=0.04  Score=40.68  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +||+|+|.|.+|.++++.|...+   +.++|.+                      ..+.+.    +.+.  .  +.++..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~---i~vi~~d----------------------~~~~~~----~~~~--~--~~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE---VFVLAED----------------------ENVRKK----VLRS--G--ANFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG---EEEEESC----------------------TTHHHH----HHHT--T--CEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC---CEEEEcc----------------------hHHHHH----HHhc--C--cccccc
Confidence            58999999999999999985443   6677652                      112222    2221  2  334444


Q ss_pred             CCCC---cchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCce
Q 023036          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (288)
Q Consensus       112 ~~~~---~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip  152 (288)
                      +..+   +...-+.+++.||.++++......+...+|+....++
T Consensus        48 d~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~   91 (129)
T d2fy8a1          48 DPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVR   91 (129)
T ss_dssp             CTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSC
T ss_pred             ccCCHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCce
Confidence            4433   1233467889999998887777777777777433333

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.29  E-value=0.0093  Score=43.60  Aligned_cols=42  Identities=14%  Similarity=0.163  Sum_probs=33.0

Q ss_pred             ccHHHHHHHhc--CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSK--SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~--~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |-.+..-.+..  ++|+|||.|.+|+|+|..|...|.. +||++.
T Consensus        10 ~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~   53 (117)
T d1ebda2          10 LDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTK-VTILEG   53 (117)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             EChhHhhChhhcCCeEEEECCCccceeeeeeecccccE-EEEEEe
Confidence            44333333433  6899999999999999999999965 999975

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.27  E-value=0.009  Score=47.45  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+|||+|..|...|..|++.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999974

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.23  E-value=0.013  Score=47.47  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=31.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      +++|+|||+|-.|..+|..|+..|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999998 6999998654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.012  Score=43.10  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|||.|.+|.|+|..|...|. ++||++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~   52 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEM   52 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEee
Confidence            689999999999999999999997 6999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.19  E-value=0.014  Score=43.06  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .++|+|||.|.+|.|+|..|...|.. +|+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccce-EEEEecc
Confidence            47899999999999999999999965 9999863

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.029  Score=48.69  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             cCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++.|||.|+.| +|+.+++.|...|. +++.+|.
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            35678989655 99999999999994 5777775

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.035  Score=46.00  Aligned_cols=62  Identities=19%  Similarity=0.085  Sum_probs=44.3

Q ss_pred             HHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|..+.|+|-|++ |+|.++|+.|+..|.. +.+.|.                      .+.|.+.+++.+++.++.  +
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r----------------------~~~~l~~~~~~~~~~~~~--~   58 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDI----------------------NKHGLEETAAKCKGLGAK--V   58 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCC--E
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCc--E
Confidence            3667788888855 8999999999999975 888874                      334566777777776653  3


Q ss_pred             eeeecCCC
Q 023036          107 SVEKGDLS  114 (288)
Q Consensus       107 ~~~~~~~~  114 (288)
                      .....+++
T Consensus        59 ~~~~~Dvs   66 (244)
T d1yb1a_          59 HTFVVDCS   66 (244)
T ss_dssp             EEEECCTT
T ss_pred             EEEEeeCC
Confidence            44444444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.15  E-value=0.031  Score=47.14  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++++|-| .+|+|.++|+.|+..|. ++.++|.
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r   57 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   57 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC
Confidence            78899999998 67999999999999994 5888885

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.069  Score=40.95  Aligned_cols=86  Identities=14%  Similarity=0.112  Sum_probs=50.4

Q ss_pred             CcEEEEcCchHHHH-HHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHILVCGMKGTVAE-FCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~VlIiG~gglGse-iaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      -||.|||+|..|.. .+..|... ++.-+.++|.                      ...|++..++...     +.  . 
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~----------------------~~~~~~~~~~~~~-----~~--~-   51 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP----------------------TRAKALPICESWR-----IP--Y-   51 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS----------------------SCTTHHHHHHHHT-----CC--B-
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEec----------------------hhHhhhhhhhccc-----cc--c-
Confidence            47999999999987 46666543 4444445554                      2234444444331     11  1 


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                          .+..++..++.|+|++|+.+ .....+...+-+  .+++++
T Consensus        52 ----~~~~~~l~~~~D~V~I~tp~-~~h~~~~~~al~--~gk~V~   89 (164)
T d1tlta1          52 ----ADSLSSLAASCDAVFVHSST-ASHFDVVSTLLN--AGVHVC   89 (164)
T ss_dssp             ----CSSHHHHHTTCSEEEECSCT-THHHHHHHHHHH--TTCEEE
T ss_pred             ----cccchhhhhhcccccccccc-hhcccccccccc--ccceee
Confidence                11234456789999988754 444555566656  677654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.14  E-value=0.011  Score=43.90  Aligned_cols=57  Identities=19%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      .++|+|||.|.+|.|+|..|+..|.. +|+++...        +.+ . ...   ++.-++.+.+.+++.+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~--------~~l-~-~~~---d~~~~~~~~~~l~~~g   86 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILD--------RPL-G-VYL---DKEFTDVLTEEMEANN   86 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS--------STT-T-TTC---CHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE-EEEEEecC--------ccc-c-ccc---chhhHHHHHHHhhcCC
Confidence            56899999999999999999999976 99997631        111 1 112   4445666667676653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.01  Score=43.95  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -++++|||.|.+|+|+|..|...|.. +||++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            36899999999999999999999976 999986

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.12  E-value=0.021  Score=46.52  Aligned_cols=115  Identities=14%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeE--EEEcCCcCCccccc--ccccCCCCccccCC-CcHHHHHHHHHhhhCCCc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRVVTEEAWS--ANFLIPPDENVYGG-KTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i--~lvD~d~v~~~nl~--r~f~~~~~di~~~G-~~Ka~~~~~~l~~lNp~v  104 (288)
                      .+.+|.|||+||.|+.++.+|.+.|+..+  ..+|.|.-..+...  .-..+........| ....+..++...+--   
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~---   90 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA---   90 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH---
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHH---
Confidence            45899999999999999999999998644  45576543322221  11111111000001 011111111111100   


Q ss_pred             eeeeeecCCCCcchhhhccCcEEEEecC-----ChhhHHHHHHHHHhcCCCceEEEEeee
Q 023036          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCC-----SVTTKKLINEKCRKLSKRVAFYTVDCR  159 (288)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~dvVi~~~~-----~~~~~~~i~~~~~~~~~~ip~i~~~~~  159 (288)
                                +...+.++++|+||++..     .-...-.+.++|++  .+++.+..-+.
T Consensus        91 ----------~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake--~g~lvv~ivtl  138 (209)
T d2vapa1          91 ----------EEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKK--IGALTVAVVTL  138 (209)
T ss_dssp             ----------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEEEEEE
T ss_pred             ----------HHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHH--cCCcEEEEEec
Confidence                      012345678998887743     12334468899999  88877754443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.02  Score=47.80  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      +|+++.++|-|+ +|+|.++|+.|+..|.. +.+.|.                      .+.+.+.+++.+++.++  ++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~~~~~~~~l~~~g~--~~   62 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI----------------------NADAANHVVDEIQQLGG--QA   62 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHcCC--cE
Confidence            467888888885 58999999999999965 888874                      23355666777777654  34


Q ss_pred             eeeecCCCCc---------chhhhccCcEEEEe
Q 023036          107 SVEKGDLSSL---------DGEFYDKFDVVVVS  130 (288)
Q Consensus       107 ~~~~~~~~~~---------~~~~~~~~dvVi~~  130 (288)
                      ..+..++.+.         ..+.+...|++|.+
T Consensus        63 ~~~~~Dvs~~~~~~~~~~~~~~~~g~iDilvnn   95 (255)
T d1fmca_          63 FACRCDITSEQELSALADFAISKLGKVDILVNN   95 (255)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEeeeC
Confidence            4444554431         12223556666664

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.035  Score=46.06  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=55.7

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .++.++|-|+ +|+|.++|+.|+..|.. +.++|.                      ...+.+.+++.+++..+..++..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r----------------------~~~~~~~~~~~l~~~~~~~~~~~   58 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDW----------------------NLEAGVQCKAALHEQFEPQKTLF   58 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHTTTSCGGGEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHhcCCCcEEE
Confidence            4567778785 68999999999999964 888874                      33355666777777766667777


Q ss_pred             eecCCCCcc---------hhhhccCcEEEEec
Q 023036          109 EKGDLSSLD---------GEFYDKFDVVVVSC  131 (288)
Q Consensus       109 ~~~~~~~~~---------~~~~~~~dvVi~~~  131 (288)
                      +..++.+..         .+.+...|++|.+.
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   90 (254)
T d2gdza1          59 IQCDVADQQQLRDTFRKVVDHFGRLDILVNNA   90 (254)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEeecCCHHHHHHHHHHHHHHcCCcCeecccc
Confidence            777765421         22345678887764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.05  E-value=0.036  Score=45.99  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++||||.|+ |-+|+++++.|...| .++++++.+...              .   ...+++    .+..+.. ..++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~--------------~---~~~~~~----~~~~~~~-~~v~~   58 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVV--------------S---NIDKVQ----MLLYFKQ-LGAKL   58 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCS--------------S---CHHHHH----HHHHHHT-TTCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcc--------------c---chhHHH----HHhhhcc-CCcEE
Confidence            4688999996 669999999999999 457776542110              0   111222    2222211 13444


Q ss_pred             eecCCCCc--chhhhccCcEEEEecC------Ch-hhHHHHHHHHHhcCCCceEEEEeeecc
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCC------SV-TTKKLINEKCRKLSKRVAFYTVDCRDS  161 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~------~~-~~~~~i~~~~~~~~~~ip~i~~~~~G~  161 (288)
                      ...++.+.  ....+.+.+.++.+..      +. .....+...+..  ...+++...++|.
T Consensus        59 v~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~v~~Ss~g~  118 (312)
T d1qyda_          59 IEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEA--GNIKRFLPSEFGM  118 (312)
T ss_dssp             ECCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHS--CCCSEEECSCCSS
T ss_pred             EEeecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHh--cCCcEEEEeeccc
Confidence            55555432  2456778888887642      11 223344444444  5677777666553

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.057  Score=45.72  Aligned_cols=102  Identities=12%  Similarity=0.219  Sum_probs=61.3

Q ss_pred             cCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ++||||.|++| +|+.+++.|...|.. ++.+|...-                   ++      .+.+........++..
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~~-------------------~~------~~~~~~~~~~~~~d~~   54 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFT-------------------GR------KRNVEHWIGHENFELI   54 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSS-------------------CC------GGGTGGGTTCTTEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCCc-------------------CC------HHHHHHhcCCCceEEE
Confidence            47899999766 999999999999954 777774110                   00      0011112223334444


Q ss_pred             ecCCCCcchhhhccCcEEEEecC---------Chhh--------HHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCC---------SVTT--------KKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~---------~~~~--------~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      ..+..   ...+.++|+||-+..         ++..        ...|-+.|++  .++.+|.+++...+|
T Consensus        55 ~~~~~---~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~--~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          55 NHDVV---EPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLLLASTSEVYG  120 (312)
T ss_dssp             ECCTT---SCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEGGGGB
T ss_pred             ehHHH---HHHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEChheec
Confidence            43322   223457898886532         1111        2345567888  778899999888776

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.016  Score=42.81  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=39.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      .+++|||.|.+|.|+|..|...|. ++||+..+.     +-++|          .+.-++.+.+.+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~-----~l~~~----------D~~~~~~l~~~l~~~   73 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI-----LLRGF----------DQDMANKIGEHMEEH   73 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS-----SSTTS----------CHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech-----hhccC----------CHHHHHHHHHHHHHC
Confidence            589999999999999999999997 599997532     22221          233456777777775

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.93  E-value=0.016  Score=44.19  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=31.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~   65 (288)
                      .+||+|||.|.+|.|+|..|...|- .+||++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4799999999999999999999986 3799998754

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.86  E-value=0.025  Score=45.47  Aligned_cols=111  Identities=12%  Similarity=0.109  Sum_probs=60.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCcCCcccc--cccccCCCCccccCCC-cHHHHHHHHHhhhCCCceee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRVVTEEAW--SANFLIPPDENVYGGK-TIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~v~~~nl--~r~f~~~~~di~~~G~-~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ||.|||.||.|+.++.+|...|+..  +..+|.|.-..+..  ..-..+........|. ...+..++...+--      
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~------   75 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESE------   75 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTH------
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHH------
Confidence            7999999999999999999999864  45566654332221  1112222111000010 11111111111100      


Q ss_pred             eeecCCCCcchhhhccCcEEEEecC-----ChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCC-----SVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~-----~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                             +...+.++++|+||++..     .-...-.+.++|++  .+++.+..-+
T Consensus        76 -------~~I~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake--~g~lvv~ivt  122 (194)
T d1w5fa1          76 -------EKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKE--MGILTVAIVT  122 (194)
T ss_dssp             -------HHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred             -------HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHHHH--cCCceEEEEe
Confidence                   012345678899888753     12344578999999  8887664443

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.82  E-value=0.015  Score=42.38  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|.|.+|.|+|..|...|.. +||++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccc-eEEEee
Confidence            6899999999999999999999974 999976

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.82  E-value=0.1  Score=40.00  Aligned_cols=88  Identities=8%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             CcEEEEcCchHHHH-HHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~gglGse-iaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      -||.|||+|..|.. .+..|...+--.+.++|.                      ...+++.+++...    ...   ..
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~----------------------~~~~~~~~~~~~~----~~~---~~   52 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTR----------------------NPKVLGTLATRYR----VSA---TC   52 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECS----------------------CHHHHHHHHHHTT----CCC---CC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC----------------------CHHHHHHHHHhcc----ccc---cc
Confidence            37999999999976 566665554334555553                      2234444444322    111   11


Q ss_pred             cCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      .++.+..+   .+.|+|++|+.+ .....+...|-+  .+++++
T Consensus        53 ~~~~~ll~---~~iD~V~I~tp~-~~H~~~~~~al~--~gk~V~   90 (167)
T d1xeaa1          53 TDYRDVLQ---YGVDAVMIHAAT-DVHSTLAAFFLH--LGIPTF   90 (167)
T ss_dssp             SSTTGGGG---GCCSEEEECSCG-GGHHHHHHHHHH--TTCCEE
T ss_pred             ccHHHhcc---cccceecccccc-cccccccccccc--cccccc
Confidence            22222111   368999888744 455556666766  677755

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.77  E-value=0.087  Score=43.60  Aligned_cols=79  Identities=14%  Similarity=0.281  Sum_probs=52.8

Q ss_pred             HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |+++.|+|.|.+ |+|.++|+.|+..|..-+.+.|..                      . +.+ ....+.+.++..++.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~----------------------~-~~~-~~~~~~~~~~~~~~~   58 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV----------------------E-NPT-ALAELKAINPKVNIT   58 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS----------------------C-CHH-HHHHHHHHCTTSEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc----------------------c-cHH-HHHHHHhhCCCCCEE
Confidence            678999999955 899999999999998855554431                      0 111 234566777777777


Q ss_pred             eeecCCC-Cc---------chhhhccCcEEEEec
Q 023036          108 VEKGDLS-SL---------DGEFYDKFDVVVVSC  131 (288)
Q Consensus       108 ~~~~~~~-~~---------~~~~~~~~dvVi~~~  131 (288)
                      .+..++. +.         ..+.+...|++|.+.
T Consensus        59 ~~~~d~~~~~~~~~~~~~~~~~~~g~iDilvnnA   92 (254)
T d1sbya1          59 FHTYDVTVPVAESKKLLKKIFDQLKTVDILINGA   92 (254)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEeecCCCHHHHHHHHHHHHHHcCCCCEEEeCC
Confidence            7776664 21         112245678887764

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.73  E-value=0.044  Score=45.43  Aligned_cols=61  Identities=21%  Similarity=0.245  Sum_probs=42.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      |+++.++|.|+ +|+|.++|+.|+..|. ++.++|.                      .+.+++.+++.+++.+.  ++.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r----------------------~~~~l~~~~~~l~~~g~--~~~   62 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISR----------------------TQKSCDSVVDEIKSFGY--ESS   62 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEES----------------------SHHHHHHHHHHHHTTTC--CEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCC--cEE
Confidence            67888889885 5899999999999996 5888875                      22355566666666554  344


Q ss_pred             eeecCCC
Q 023036          108 VEKGDLS  114 (288)
Q Consensus       108 ~~~~~~~  114 (288)
                      .+..++.
T Consensus        63 ~~~~Dvt   69 (251)
T d2c07a1          63 GYAGDVS   69 (251)
T ss_dssp             EEECCTT
T ss_pred             EEEccCC
Confidence            4444444

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.71  E-value=0.017  Score=43.37  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .++|+|||.|.+|.|+|..|...|.. +|+++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcc-eeeeeec
Confidence            57899999999999999999999975 9999863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.70  E-value=0.038  Score=44.23  Aligned_cols=39  Identities=13%  Similarity=0.044  Sum_probs=31.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccccc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~   72 (288)
                      +|+|+|+|-+|..+|-.|+..|. +++.+|.+.=....++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhc
Confidence            69999999999999999999996 4889997654334443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.68  E-value=0.052  Score=44.95  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|-|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r   37 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASR   37 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            67889999985 5899999999999997 5888885

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.64  E-value=0.015  Score=46.39  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      .|...+|.|+|+|.+|.++++.|...|+. +..+|....
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   78 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRL   78 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCC
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeeccc
Confidence            46789999999999999999999998875 788887443

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.61  E-value=0.053  Score=43.61  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCcCCcccccc--cccCCCCccc---cCCCc-HHHHHHHHHhhhCCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRVVTEEAWSA--NFLIPPDENV---YGGKT-IAEVCCDSLKDFNPM  103 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~v~~~nl~r--~f~~~~~di~---~~G~~-Ka~~~~~~l~~lNp~  103 (288)
                      +.|.|||.||.|+.++..|.+.|+..  +..+|.|.-..+....  -..+.+.-..   ..|.+ +.+.+++.-      
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~------   75 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALED------   75 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHT------
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHH------
Confidence            57899999999999999999999864  4445665433332211  1111110000   00111 111111110      


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC-----ChhhHHHHHHHHHhcCCCceEEEEee
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC-----SVTTKKLINEKCRKLSKRVAFYTVDC  158 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~-----~~~~~~~i~~~~~~~~~~ip~i~~~~  158 (288)
                                .+...+.++++|+||++..     .-...-.+.++|++  .+++.+..-+
T Consensus        76 ----------~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake--~g~lvvaivt  123 (198)
T d1ofua1          76 ----------RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKE--MGILTVAVVT  123 (198)
T ss_dssp             ----------HHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred             ----------HHHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHH--cCCCEEEEEe
Confidence                      0112456788999988753     12234468999999  8887765443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.61  E-value=0.016  Score=47.19  Aligned_cols=33  Identities=12%  Similarity=0.232  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+||+|||+|..|...|..|+..|. +++|+|..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            4789999999999999999999998 59999963

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.60  E-value=0.047  Score=45.57  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|.| .+|+|.++|+.|+..|.. +.++|.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r   38 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADI   38 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            78999999998 458999999999999965 888875

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.51  E-value=0.009  Score=48.30  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=34.4

Q ss_pred             ccHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        21 ~G~~~q~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |.....+.|.+++|.|+|+|.+|.++|+-|...|+. +..+|+
T Consensus        33 w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~   74 (197)
T d1j4aa1          33 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDI   74 (197)
T ss_dssp             CTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cCCCcCccccCCeEEEecccccchhHHHhHhhhccc-ccccCc
Confidence            443323458999999999999999999999999975 777775

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.51  E-value=0.075  Score=44.12  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++|+|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r   38 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   38 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6789999999 56899999999999997 5999885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.46  E-value=0.13  Score=39.60  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|.-.+..+...|...+..+|.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~   61 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL   61 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecc
Confidence            4467999999999999999999999999999886

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.46  E-value=0.02  Score=47.72  Aligned_cols=33  Identities=12%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +.+|+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999999 59999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.078  Score=40.83  Aligned_cols=33  Identities=9%  Similarity=0.034  Sum_probs=28.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|+|+|++|.-.+..+-..|.. +..+|.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~   59 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISR   59 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcccc-cccccc
Confidence            468899999999999999988899984 667775

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.02  Score=42.39  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|+|||.|.+|+|+|..|...|.. +||++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSK-TSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcE-EEEEee
Confidence            6899999999999999999999965 999987

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.40  E-value=0.04  Score=45.65  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|-| .+|+|.++|+.|+..|.. +.++|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            68999999998 568999999999999975 888775

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.33  E-value=0.094  Score=42.40  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|||+|..|...|..|++.|. .++|+|.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~   80 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDT   80 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEee
Confidence            56899999999999999999999997 4999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.30  E-value=0.029  Score=45.65  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..||+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999998 69999863

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.25  E-value=0.084  Score=45.71  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.0

Q ss_pred             cEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|||.|++| +|+++++.|+..|...+..+|..
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            799999766 99999999999998877778863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.18  Score=38.22  Aligned_cols=74  Identities=18%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             cEEEEc-CchHHHHHHHHHHHh-C-CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           33 HILVCG-MKGTVAEFCKNIVLA-G-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~-G-vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ||.|+| +|.+|+.+|-.|+.. | +..+.++|-+                     .  +++..+--|+...........
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~---------------------~--~~~g~a~Dl~h~~~~~~~~~~   58 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA---------------------P--VTPGVAVDLSHIPTAVKIKGF   58 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS---------------------T--THHHHHHHHHTSCSSCEEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc---------------------c--cchhHHHHHHCCccccCCcEE
Confidence            799999 599999999988754 5 4689998841                     1  122223345554433443333


Q ss_pred             ecCCCCcchhhhccCcEEEEecC
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..   ..+.+-+++.|+||.+..
T Consensus        59 ~~---~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          59 SG---EDATPALEGADVVLISAG   78 (145)
T ss_dssp             CS---SCCHHHHTTCSEEEECCS
T ss_pred             Ec---CCCccccCCCCEEEECCC
Confidence            21   223456789999999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.20  E-value=0.08  Score=41.25  Aligned_cols=93  Identities=17%  Similarity=0.188  Sum_probs=56.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhC-----CCeEEEEcCCcCCcccccccccCCCCccccCCCcHH----HHHHHHHhhh
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAG-----VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA----EVCCDSLKDF  100 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~G-----vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka----~~~~~~l~~l  100 (288)
                      ++-+|.|||+|++|...+-...+..     ++++.|+|-                      .+.|+    +.+.......
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Di----------------------d~~~~~~~~~~~~~~~~~~   59 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDN----------------------DKERQDRIAGACDVFIREK   59 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECS----------------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcC----------------------ChhHHHHHHHHHHHHHHHh
Confidence            3568999999998876443333322     357899885                      23333    4444455556


Q ss_pred             CCCceeeeeecCCCCcchhhhccCcEEEEecCC--hhhHHHHHHHHHhcCCCc
Q 023036          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRV  151 (288)
Q Consensus       101 Np~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~i~~~~~~~~~~i  151 (288)
                      +...++.....     ..+.+++.|+||.+...  .+.+.+-..+..+  +++
T Consensus        60 ~~~~~~~~~~d-----~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~--~Gi  105 (167)
T d1u8xx1          60 APDIEFAATTD-----PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLK--YGV  105 (167)
T ss_dssp             CTTSEEEEESC-----HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHT--TTC
T ss_pred             CCCcceEecCC-----hhhccCCCCEEEECCCcCCCCceeHHHhhchh--cCc
Confidence            66566665542     35678899999999754  3334444455555  444

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.18  E-value=0.084  Score=43.51  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|-|+ +|+|.++|+.|+..|.. +.+.|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            688999999985 58999999999999985 888875

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.056  Score=41.82  Aligned_cols=74  Identities=12%  Similarity=0.044  Sum_probs=44.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhC-----CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC-CCcee
Q 023036           33 HILVCGMKGTVAEFCKNIVLAG-----VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVRV  106 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~G-----vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN-p~v~v  106 (288)
                      ||.|||+|++|+..+-...+.+     ++++.|+|-                      .+.|+++..+..+.+. ....+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Di----------------------d~~k~~~~~d~~~~~~~~~~~~   59 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDI----------------------DEEKQKIVVDFVKRLVKDRFKV   59 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECS----------------------CHHHHHHHHHHHHHHHTTSSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEec----------------------CcHHHHHHHHHHHhhhccCceE
Confidence            6999999998877664433322     578999984                      2224444443333321 12223


Q ss_pred             eeeecCCCCcchhhhccCcEEEEecCC
Q 023036          107 SVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ...     ....+.+++.|+||.+...
T Consensus        60 ~~t-----~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1          60 LIS-----DTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             EEC-----SSHHHHHTTCSEEEECCCT
T ss_pred             EEe-----cCcccccCCCCEEEEeccc
Confidence            222     2246778999999998754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.23  Score=41.92  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             cEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      ||||.|+.| +|+.+++.|...|--++..+|...-   .           .   .         .+.+ +|  +++....
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~---~-----------~---~---------~~~~-~~--~~~~i~~   52 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---A-----------I---S---------RFLN-HP--HFHFVEG   52 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG---G-----------G---G---------GGTT-CT--TEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc---c-----------h---h---------hhcc-CC--CeEEEEC
Confidence            699999766 9999999999998556888775210   0           0   0         0000 22  3455555


Q ss_pred             CCCCc---chhhhccCcEEEEecCC--h---------------hhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          112 DLSSL---DGEFYDKFDVVVVSCCS--V---------------TTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       112 ~~~~~---~~~~~~~~dvVi~~~~~--~---------------~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      ++.+.   .+...+++|+||-+...  .               .....+-+.|.+  .++.++...+...+|
T Consensus        53 Di~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~--~~~~~~~~ss~~~~~  122 (342)
T d2blla1          53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVK--YRKRIIFPSTSEVYG  122 (342)
T ss_dssp             CTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH--TTCEEEEECCGGGGB
T ss_pred             ccCChHHHHHHHHhCCCccccccccccccccccCCcccccccccccccccccccc--ccccccccccccccc
Confidence            55332   23356778888876432  1               112345567877  778888777766666

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.10  E-value=0.098  Score=38.88  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=25.2

Q ss_pred             hccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       121 ~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      +.++|+||+-+. ++.....-++|.+  +++|+|. +|.|
T Consensus        39 ~~~~DVvIDFS~-p~~~~~~l~~~~~--~~~p~Vi-GTTG   74 (128)
T d1vm6a3          39 LDSPDVVIDFSS-PEALPKTVDLCKK--YRAGLVL-GTTA   74 (128)
T ss_dssp             CSCCSEEEECSC-GGGHHHHHHHHHH--HTCEEEE-CCCS
T ss_pred             hccCCEEEEecC-HHHHHHHHHHHHh--cCCCEEE-EcCC
Confidence            456899998764 4555666778888  8999875 4444

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.12  Score=43.96  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=27.3

Q ss_pred             cCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++||||.|++ -+|+++++.|...|- .++.+|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5789999955 599999999999995 6888886

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.01  E-value=0.024  Score=41.54  Aligned_cols=31  Identities=16%  Similarity=0.128  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++|||.|.+|+|+|..|+..|.. +|++..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~   53 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLEA   53 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEEe
Confidence            7899999999999999999999976 888764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.97  E-value=0.023  Score=43.38  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +||+|||.|.+|.|+|..|.+ | .++||++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEeccc
Confidence            589999999999999999976 4 4799998643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.96  E-value=0.028  Score=45.89  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      +|+|||+|..|..+|..|.+.|+..++|++...
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            699999999999999999999999999998743

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.93  E-value=0.22  Score=38.66  Aligned_cols=91  Identities=12%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEE-EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~-lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      -||.|||+|..|...++.|...+=-+++ ++|.                      ...|++.+++... ..+..++  +.
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~----------------------~~~~~~~~~~~~~-~~~~~~~--~~   56 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASR----------------------SLEKAKAFATANN-YPESTKI--HG   56 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS----------------------SHHHHHHHHHHTT-CCTTCEE--ES
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeC----------------------Cccccccchhccc-cccceee--cC
Confidence            3799999999999999999776321222 3343                      3334444443221 1122221  11


Q ss_pred             cCCCCcchhhh--ccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          111 GDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       111 ~~~~~~~~~~~--~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                       +    -++++  .+.|+|++++.+ .....+...|-+  ++++++.
T Consensus        57 -~----~~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~--~g~~v~~   95 (184)
T d1ydwa1          57 -S----YESLLEDPEIDALYVPLPT-SLHVEWAIKAAE--KGKHILL   95 (184)
T ss_dssp             -S----HHHHHHCTTCCEEEECCCG-GGHHHHHHHHHT--TTCEEEE
T ss_pred             -c----HHHhhhccccceeeecccc-hhhcchhhhhhh--ccceeec
Confidence             1    12333  467899988754 455566667756  7777653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.92  E-value=0.056  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|-|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r   41 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYR   41 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            67888999985 5899999999999997 5888886

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.91  E-value=0.26  Score=41.82  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             cCcEEEEcCch-HHHHHHHHHHHhCCC
Q 023036           31 KSHILVCGMKG-TVAEFCKNIVLAGVG   56 (288)
Q Consensus        31 ~~~VlIiG~gg-lGseiaknL~l~Gvg   56 (288)
                      +++|||.|++| +|+.+++.|...|..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~   37 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYK   37 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCE
Confidence            68999999877 999999999999965

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.87  E-value=0.031  Score=40.67  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..++|+|+|.|.+|+|+|..|.+.|.. +++++.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~   53 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVR   53 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchh-heEeec
Confidence            468999999999999999999999954 888876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.87  E-value=0.031  Score=41.45  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+++|+|.|.+|+|+|..+...|.. +||++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCE-EEEEEe
Confidence            6899999999999999999999965 999976

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.058  Score=42.18  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             cCcEEEEcCchHHHH--HHHHHHHh-C--CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHH----HHHHHHhhhC
Q 023036           31 KSHILVCGMKGTVAE--FCKNIVLA-G--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE----VCCDSLKDFN  101 (288)
Q Consensus        31 ~~~VlIiG~gglGse--iaknL~l~-G--vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~----~~~~~l~~lN  101 (288)
                      +-||.|||+|++|..  ++..|++. +  .++|.|+|-                      .+.|++    .+.+.....+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Di----------------------d~~~~~~~~~~~~~~~~~~~   59 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDI----------------------DEERLDAILTIAKKYVEEVG   59 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECS----------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeC----------------------CchHHHHHHHHHHHHHHhcC
Confidence            468999999999865  44445532 2  368999986                      222333    3344455566


Q ss_pred             CCceeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      +..++.....     ..+.++++|+||.+...
T Consensus        60 ~~~~i~~~td-----~~eaL~dad~Vv~~~~~   86 (171)
T d1obba1          60 ADLKFEKTMN-----LDDVIIDADFVINTAMV   86 (171)
T ss_dssp             CCCEEEEESC-----HHHHHTTCSEEEECCCT
T ss_pred             CCeEEEEeCC-----hhhcccCCCeEeeeccc
Confidence            6666666542     35678999999998653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.81  E-value=0.036  Score=43.90  Aligned_cols=37  Identities=11%  Similarity=0.109  Sum_probs=33.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      .|.+++|.|+|.|.+|.++++.+...|+ ++..+|...
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            4899999999999999999999999998 588888743

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.68  E-value=0.11  Score=43.19  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r   40 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   40 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            368899999984 5899999999999997 5888875

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.14  Score=43.54  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             CcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           32 SHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        32 ~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      +.|||.|++ -+|+.+++.|...|. +++.+|.       +.+            +........+.+  .++  .++.+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~-------~~~------------~~~~~~~~~~~~--~~~--~v~~~~   57 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN-------LSN------------STYDSVARLEVL--TKH--HIPFYE   57 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-------CSS------------CCTHHHHHHHHH--HTS--CCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC-------CCC------------cchhHHHhHHhh--ccc--CCeEEE
Confidence            568888855 599999999999995 5788874       111            111111111111  222  344555


Q ss_pred             cCCCCcc--hhhhc--cCcEEEEecCCh-----------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          111 GDLSSLD--GEFYD--KFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       111 ~~~~~~~--~~~~~--~~dvVi~~~~~~-----------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      .++.+..  ...+.  +.|+||-+....                 .....+.+.|++  .++ .||..++...+|
T Consensus        58 ~Dl~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~--~~i~~~i~~SS~~vyg  130 (347)
T d1z45a2          58 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQ--YNVSKFVFSSSATVYG  130 (347)
T ss_dssp             CCTTCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHH--HTCCEEEEEEEGGGGC
T ss_pred             eecCCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHh--cccceEEeecceeeec
Confidence            5555422  22233  678888654311                 112345567877  664 588888888776

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.11  Score=43.10  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             cCcEEEE--cCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           31 KSHILVC--GMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIi--G~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+||.||  |.+|+|-++|+.|+..|-.++.+.+.                      ...|.+.+++.|++.++.+  ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r----------------------~~~~~~~~~~~l~~~~~~~--~~   57 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAR----------------------DVTRGQAAVQQLQAEGLSP--RF   57 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEES----------------------SHHHHHHHHHHHHHTTCCC--EE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEEC----------------------CHHHHHHHHHHHHhcCCcE--EE
Confidence            5789777  57799999999999985567888764                      3447788888888887654  44


Q ss_pred             eecCCCCcc---------hhhhccCcEEEEe
Q 023036          109 EKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       109 ~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      +..++.+..         .+.+...|++|..
T Consensus        58 ~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnN   88 (275)
T d1wmaa1          58 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNN   88 (275)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred             EEEecCCHHHHHHHHHHHHHhcCCcEEEEEc
Confidence            555554421         1224567777764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.61  E-value=0.15  Score=42.21  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|-|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r   40 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSR   40 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            67889999985 4899999999999997 5888875

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.59  E-value=0.16  Score=41.86  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             CcE-EEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           32 SHI-LVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        32 ~~V-lIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +|| +|-| .+|+|.++|+.|+..|. ++.+.|.                      .+.+.+.+++.+++.+.  ++..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r----------------------~~~~l~~~~~~i~~~g~--~~~~~   55 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADY----------------------NDATAKAVASEINQAGG--HAVAV   55 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCC--cEEEE
Confidence            355 6667 45899999999999997 5888874                      23356666777776654  34445


Q ss_pred             ecCCCCc---------chhhhccCcEEEEe
Q 023036          110 KGDLSSL---------DGEFYDKFDVVVVS  130 (288)
Q Consensus       110 ~~~~~~~---------~~~~~~~~dvVi~~  130 (288)
                      ..++.+.         ..+.+...|++|.+
T Consensus        56 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnn   85 (255)
T d1gega_          56 KVDVSDRDQVFAAVEQARKTLGGFDVIVNN   85 (255)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCccEEEec
Confidence            5555431         11224456766654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.58  E-value=0.035  Score=45.62  Aligned_cols=36  Identities=8%  Similarity=0.018  Sum_probs=31.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE   68 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~   68 (288)
                      ..|+|||+|.+|+.+|..|++.|. +++|+|.+.+..
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~~   40 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMGG   40 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCC
Confidence            359999999999999999999995 699999876643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.50  E-value=0.078  Score=43.91  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||++++++|.|+ +|+|.++|+.|+..|. ++.++|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            478899999995 6999999999999996 4888874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.22  Score=42.23  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=25.7

Q ss_pred             cEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||||.|++ -+|+.+++.|...| .+++++|.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence            69999965 49999999999999 45888874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.43  E-value=0.061  Score=41.27  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCCcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVV   66 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d~v   66 (288)
                      .+.+|+|||.|.+|.|+|..|.+.|.. +++++++...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   39 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence            367899999999999999999999986 5666666543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.43  E-value=0.16  Score=43.93  Aligned_cols=126  Identities=13%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             cCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCCcCCccc--ccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEA--WSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        31 ~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d~v~~~n--l~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      .+||||.|++| +|+++++.|...| .+++.+|+-.-...+  .+..-+..       .....+.+...-...++  +++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~i~   70 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTP-------IASIHDRISRWKALTGK--SIE   70 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSC-------CCCHHHHHHHHHHHHCC--CCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCccccccccccccccc-------ccchHHHHHHHHhhcCC--CcE
Confidence            36899999766 9999999999999 568998852111111  11111111       12223333322223344  456


Q ss_pred             eeecCCCCc--chhhhc--cCcEEEEecC---------Chh-----------hHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          108 VEKGDLSSL--DGEFYD--KFDVVVVSCC---------SVT-----------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       108 ~~~~~~~~~--~~~~~~--~~dvVi~~~~---------~~~-----------~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      .+..++.+.  ....++  ++|+|+-...         +..           ....+-+.|++.+....++.+.+...+|
T Consensus        71 ~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~  150 (393)
T d1i24a_          71 LYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYG  150 (393)
T ss_dssp             EEESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGC
T ss_pred             EEEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccc
Confidence            666666542  133444  4688886432         111           1223446777744556788888877776


Q ss_pred             EEE
Q 023036          164 EIF  166 (288)
Q Consensus       164 ~v~  166 (288)
                      ...
T Consensus       151 ~~~  153 (393)
T d1i24a_         151 TPN  153 (393)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.29  E-value=0.073  Score=42.51  Aligned_cols=33  Identities=9%  Similarity=0.061  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC------eEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG------SLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg------~i~lvD~d   64 (288)
                      .||+|||+|..|-..|..|++.|..      +++|+|..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC
Confidence            4899999999999999999999952      69999873

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.28  E-value=0.042  Score=45.43  Aligned_cols=37  Identities=16%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      |||+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4799999999995 5899999999999997 48888753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.27  E-value=0.042  Score=43.54  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|.|||+|-+|+-+|-.++++|.. ++++|.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECC
Confidence            4699999999999999999999976 9999974

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.27  E-value=0.035  Score=45.50  Aligned_cols=40  Identities=15%  Similarity=0.331  Sum_probs=36.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ++|++.||++.|+|+.|.-+++.|...|.++|.++|.+-+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            4789999999999999999999999999999999997533

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.25  E-value=0.045  Score=44.13  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+.++|+|-|.|.+|..+|+.|...| .++++.|.+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecch
Confidence            488999999999999999999999999 568888753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.22  E-value=0.16  Score=38.72  Aligned_cols=77  Identities=13%  Similarity=0.051  Sum_probs=48.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCe------EEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~------i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      ||.|+|+ |.+|+.++-.|+..++-.      +.++|.                 +.   ...+.+..+..+........
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~-----------------~~---~~~~~~~~~~~~~~~~~~~~   65 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI-----------------PQ---AMKALEGVVMELEDCAFPLL   65 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC-----------------GG---GHHHHHHHHHHHHTTTCTTE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc-----------------cc---chhhHcCchhhhhccccccc
Confidence            8999997 999999999999888632      222222                 11   33456666666666554322


Q ss_pred             eeeeecCCCCcchhhhccCcEEEEecC
Q 023036          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      -.....   ....+.+++.|+||.+..
T Consensus        66 ~~~~~~---~~~~~~~~~advViitaG   89 (154)
T d1y7ta1          66 AGLEAT---DDPKVAFKDADYALLVGA   89 (154)
T ss_dssp             EEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred             cccccC---CchhhhcccccEEEeecC
Confidence            222111   224567899999999874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.13  Score=42.25  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r   39 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSR   39 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC
Confidence            36889999998 55899999999999997 5888875

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.20  E-value=0.14  Score=42.53  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|+++.++|.| .+|+|.++|+.|+..|.. +.+.|.+                     .+.+++.+++.+++.++  ++
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~---------------------~~~~~~~~~~~~~~~g~--~~   59 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRS---------------------KEDEANSVLEEIKKVGG--EA   59 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--EE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC---------------------cHHHHHHHHHHHHhcCC--cE
Confidence            47888899988 568999999999999974 7777741                     22356667777777665  44


Q ss_pred             eeeecCCCCcc---------hhhhccCcEEEEe
Q 023036          107 SVEKGDLSSLD---------GEFYDKFDVVVVS  130 (288)
Q Consensus       107 ~~~~~~~~~~~---------~~~~~~~dvVi~~  130 (288)
                      ..+..++.+..         .+.+...|++|.+
T Consensus        60 ~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   92 (261)
T d1geea_          60 IAVKGDVTVESDVINLVQSAIKEFGKLDVMINN   92 (261)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHhCCCCEeecc
Confidence            45555554311         1223456777765

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.18  E-value=0.37  Score=35.96  Aligned_cols=34  Identities=9%  Similarity=-0.157  Sum_probs=23.0

Q ss_pred             cCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       123 ~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ++|+||+-+. ++.....-++|.+  +++|++. +|.|
T Consensus        44 ~~DvvIDFS~-p~~~~~~~~~~~~--~~~~~Vi-GTTG   77 (135)
T d1yl7a1          44 NTEVVIDFTH-PDVVMGNLEFLID--NGIHAVV-GTTG   77 (135)
T ss_dssp             TCSEEEECCC-TTTHHHHHHHHHH--TTCEEEE-CCCC
T ss_pred             cCCEEEEccc-HHHHHHHHHHHHh--cCCCEEE-eccc
Confidence            5788888764 4445566677877  8888765 5555

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.18  E-value=0.085  Score=41.98  Aligned_cols=39  Identities=10%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      ..+++++|.|+|+|.+|.++++-+...|+. +..+|+..-
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   81 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRA   81 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCC
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccc-ccccccccc
Confidence            467899999999999999999999988877 667776443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.15  E-value=0.088  Score=40.24  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCC------eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh-CCC
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPM  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gvg------~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l-Np~  103 (288)
                      .||.|+|+ |.+|+.++-.|+..++-      .+.++|-               .  -   .+.+++.+.-.+... .|.
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~---------------~--~---~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI---------------T--P---MMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC---------------G--G---GHHHHHHHHHHHHHTCCTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC---------------c--c---chhhhhhhhhhhccccccc
Confidence            48999995 99999999999876652      3444443               0  0   334556665555443 333


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      .......    ....+.+++.|+||.+..
T Consensus        64 ~~~~~~~----~~~~~~~~~~dvVVitag   88 (154)
T d5mdha1          64 LKDVIAT----DKEEIAFKDLDVAILVGS   88 (154)
T ss_dssp             EEEEEEE----SCHHHHTTTCSEEEECCS
T ss_pred             ccccccC----cccccccCCceEEEEecc
Confidence            2222211    224567889999999864

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.13  E-value=0.11  Score=43.09  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|-| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r   36 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5677778877 55899999999999997 5888875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.10  E-value=0.066  Score=40.97  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=37.7

Q ss_pred             cEEEE-cCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC
Q 023036           33 HILVC-GMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (288)
Q Consensus        33 ~VlIi-G~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~  103 (288)
                      ||.|+ |+|++|..+|+.|+..|.. +++.+.                      ...|++.+.+.+.+.-+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R----------------------~~e~~~~l~~~i~~~~~~   50 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSR----------------------REEKAEAKAAEYRRIAGD   50 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEES----------------------SHHHHHHHHHHHHHHHSS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCC
Confidence            68999 7999999999999999965 888764                      334677777777765443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.08  E-value=0.061  Score=39.01  Aligned_cols=57  Identities=18%  Similarity=0.051  Sum_probs=39.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lN  101 (288)
                      ..+|+|||.|.+|+|+|..|...|..  .+||++..        .+.+ +.  .   +..=++.+.+.+++.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~--------~~iL-~~--~---d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG--------EMIL-RG--F---DHTLREELTKQLTANG   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS--------SSSS-TT--S---CHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc--------chhh-cc--c---chHHHHHHHHHHHhcC
Confidence            36899999999999999988887764  69999762        1111 11  1   3334567777777754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.08  E-value=0.19  Score=38.99  Aligned_cols=90  Identities=17%  Similarity=0.068  Sum_probs=49.8

Q ss_pred             HhcCcEEEEcCchHHHH-HHHHHHHhC-CCeEE-EEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           29 LSKSHILVCGMKGTVAE-FCKNIVLAG-VGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        29 L~~~~VlIiG~gglGse-iaknL~l~G-vg~i~-lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      |++-||.|||+|..|.. .+..+...+ .-+++ ++|.                      ...|++.+++...    ...
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~----------------------~~~~~~~~~~~~~----~~~   54 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR----------------------TRSHAEEFAKMVG----NPA   54 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS----------------------SHHHHHHHHHHHS----SCE
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEec----------------------cHhhhhhhhcccc----ccc
Confidence            34568999999999987 477776533 22333 4443                      2334444444332    111


Q ss_pred             eeeeecCCCCcchhhh--ccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          106 VSVEKGDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       106 v~~~~~~~~~~~~~~~--~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                        .+ .+    -++.+  .+.|+|++|+.+ .....+...+-+  .+++++
T Consensus        55 --~~-~~----~~ell~~~~id~v~I~tp~-~~h~~~~~~al~--~gk~V~   95 (181)
T d1zh8a1          55 --VF-DS----YEELLESGLVDAVDLTLPV-ELNLPFIEKALR--KGVHVI   95 (181)
T ss_dssp             --EE-SC----HHHHHHSSCCSEEEECCCG-GGHHHHHHHHHH--TTCEEE
T ss_pred             --ee-ee----eeccccccccceeeccccc-cccccccccccc--cchhhh
Confidence              11 11    23344  358899988754 444555566656  666633

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.13  Score=42.48  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|-|+ +|+|.++|+.|+..|. ++.+.|.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r   38 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDK   38 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            789999999995 6999999999999997 4888875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.98  E-value=0.052  Score=44.92  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++|+|||+|..|...|..|+..|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            489999999999999999999996 69999964

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.97  E-value=0.19  Score=41.32  Aligned_cols=73  Identities=21%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      -++|-| .+|+|.++|+.|+..|.. +.++|.                      .+.+.+.+++.|++.+.  ++..+..
T Consensus         4 ValITGas~GIG~aia~~la~~Ga~-V~i~~r----------------------~~~~l~~~~~~l~~~g~--~~~~~~~   58 (257)
T d2rhca1           4 VALVTGATSGIGLEIARRLGKEGLR-VFVCAR----------------------GEEGLRTTLKELREAGV--EADGRTC   58 (257)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--cEEEEEe
Confidence            345666 568999999999999975 888875                      23355666777776654  4455555


Q ss_pred             CCCCc---------chhhhccCcEEEEe
Q 023036          112 DLSSL---------DGEFYDKFDVVVVS  130 (288)
Q Consensus       112 ~~~~~---------~~~~~~~~dvVi~~  130 (288)
                      ++.+.         ..+.+...|++|.+
T Consensus        59 Dvs~~~~v~~~~~~~~~~~g~iDilVnn   86 (257)
T d2rhca1          59 DVRSVPEIEALVAAVVERYGPVDVLVNN   86 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCSCSEEEEC
T ss_pred             ecCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            55432         12234556777764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.067  Score=42.36  Aligned_cols=51  Identities=8%  Similarity=-0.100  Sum_probs=36.5

Q ss_pred             hhhhhhhh--ccHHHH--HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           13 LYDRQIRV--WGADAQ--RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        13 rYdRqirl--~G~~~q--~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+++.+-  |.....  ..|++++|+|+|+|.+|.++++-|...|+. +..+|..
T Consensus        22 ~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          22 EANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             HHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             HHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            34444443  443332  248899999999999999999999888876 7788864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.37  Score=33.22  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=54.8

Q ss_pred             cCcEEEEcCchHHH-HHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMKGTVA-EFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~gglGs-eiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      +.||-++|.||+|. .+|+.|...|.. ++-.|.        ..      ..           ..++|+++.  +++.. 
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~--------~~------~~-----------~t~~L~~~G--i~i~~-   51 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGND-VYGSNI--------EE------TE-----------RTAYLRKLG--IPIFV-   51 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECS--------SC------CH-----------HHHHHHHTT--CCEES-
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCe-EEEEeC--------CC------Ch-----------hHHHHHHCC--CeEEe-
Confidence            36899999999986 678999999974 666653        11      11           134566665  33322 


Q ss_pred             ecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       110 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                       .    ...+.+.+.|+||.+..=.+..-. -..+++  +++|++.
T Consensus        52 -g----h~~~~i~~~d~vV~SsAI~~~npe-l~~A~~--~gIpv~~   89 (89)
T d1j6ua1          52 -P----HSADNWYDPDLVIKTPAVRDDNPE-IVRARM--ERVPIEN   89 (89)
T ss_dssp             -S----CCTTSCCCCSEEEECTTCCTTCHH-HHHHHH--TTCCEEE
T ss_pred             -e----ecccccCCCCEEEEecCcCCCCHH-HHHHHH--cCCCccC
Confidence             1    123445679999998653222222 346778  8999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.83  E-value=0.3  Score=38.08  Aligned_cols=77  Identities=17%  Similarity=0.100  Sum_probs=49.2

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-C-----eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCC-
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-  103 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~Gv-g-----~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~-  103 (288)
                      .||+|+|+ |.+|..++-.|+..++ |     .+.++|-+                 -   .+.+++..+-.++..-.. 
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~-----------------~---~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE-----------------R---SFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------G---GHHHHHHHHHHHHTTTCTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc-----------------c---ccchhcchhhhhccccccc
Confidence            47999996 9999999999998665 2     44454430                 1   334556666666655332 


Q ss_pred             ceeeeeecCCCCcchhhhccCcEEEEecC
Q 023036          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (288)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~dvVi~~~~  132 (288)
                      ..-....    ....+.+++.|+||.+..
T Consensus        85 ~~~~~~~----~~~~~~~~~aDvVvi~ag  109 (175)
T d7mdha1          85 LREVSIG----IDPYEVFEDVDWALLIGA  109 (175)
T ss_dssp             EEEEEEE----SCHHHHTTTCSEEEECCC
T ss_pred             ccCcccc----ccchhhccCCceEEEeec
Confidence            2222222    224667899999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.82  E-value=0.049  Score=42.51  Aligned_cols=77  Identities=18%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             CcEEEEcCchHHH--HHHHHHHHh---CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHH----HHhhhCC
Q 023036           32 SHILVCGMKGTVA--EFCKNIVLA---GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD----SLKDFNP  102 (288)
Q Consensus        32 ~~VlIiG~gglGs--eiaknL~l~---Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~----~l~~lNp  102 (288)
                      .||.|||+|++|.  .++-.+...   .+++|.++|-+               +     ++.|.+++-.    ...+.+.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~---------------e-----~~~~~~~~d~~~~~~~~~~~~   61 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIP---------------E-----GKEKLEIVGALAKRMVEKAGV   61 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCG---------------G-----GHHHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCC---------------c-----cHHHHHHHHHHHHHHHHhcCC
Confidence            4799999997664  333333332   34689998851               1     3334444332    2445566


Q ss_pred             CceeeeeecCCCCcchhhhccCcEEEEecCC
Q 023036          103 MVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       103 ~v~v~~~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      .+++...+.     ..+.+++.|+||.+...
T Consensus        62 ~~~~~~~td-----~~~al~gaDvVv~ta~~   87 (169)
T d1s6ya1          62 PIEIHLTLD-----RRRALDGADFVTTQFRV   87 (169)
T ss_dssp             CCEEEEESC-----HHHHHTTCSEEEECCCT
T ss_pred             CceeeecCC-----chhhcCCCCEEEEcccc
Confidence            666665542     24567899999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.82  E-value=0.042  Score=40.43  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++|||.|-+|.|+|..|...|. ++|++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            689999999999999999999996 5999875

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.16  Score=39.24  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             hhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeec
Q 023036          118 GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (288)
Q Consensus       118 ~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G  160 (288)
                      ++.+..+|+||+-+. ++.....-++|.+  +++|++.+ |.|
T Consensus        66 ~~~~~~~DViIDFs~-p~~~~~~~~~a~~--~~~~~ViG-TTG  104 (162)
T d1diha1          66 DAVKDDFDVFIDFTR-PEGTLNHLAFCRQ--HGKGMVIG-TTG  104 (162)
T ss_dssp             TTTTTSCSEEEECSC-HHHHHHHHHHHHH--TTCEEEEC-CCC
T ss_pred             HHHhcccceEEEecc-HHHHHHHHHHHHh--ccceeEEe-cCC
Confidence            345678999998864 4555566688988  99999863 445

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.72  E-value=0.046  Score=43.72  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|.+++|.|||+|.+|.++|+-|...|+. +..+|+
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            48899999999999999999999988876 777776

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.72  E-value=0.068  Score=42.83  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=32.6

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..|.+++|.|+|.|.+|.++++-|.-.|+. +..+|+.
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   77 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY   77 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             ccccceeeeeeeccccccccccccccccee-eeccCCc
Confidence            368899999999999999999999999977 6777863

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.71  E-value=0.12  Score=42.58  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|.| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~   38 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            78999999988 558999999999999975 888875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.67  E-value=0.085  Score=40.77  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d   64 (288)
                      .+++|+|||.|.+|.|+|..|.+.|.. .++++.+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            357899999999999999999999976 56666543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.58  E-value=0.044  Score=42.09  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|.-++.-+-..|. ++..+|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~   59 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL-HVAAIDI   59 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC-ccceecc
Confidence            5789999999999999999999994 6777775

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.48  E-value=0.055  Score=46.29  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ++++|+|||+|-.|.-+|..|+..|. +++|+|..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            47899999999999999999999995 69999863

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.21  Score=41.40  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|++++++|.|++ |+|.++|+.|+..|. ++.++|.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r   46 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTAR   46 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4889999999955 899999999999996 5888775

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.048  Score=43.46  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      =.+|.|||+|-+|+-+|..++++|.. ++++|.+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence            36899999999999999999999965 99999743

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.40  E-value=0.3  Score=41.63  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=27.8

Q ss_pred             hcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|.||||.|+. =+|+.+++.|...|- .++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            58899999955 599999999999995 5777775

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.38  E-value=0.034  Score=42.92  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+ |++|.-++..+...|..++.++|.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~   61 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV   61 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             CCCEEEEEeccccceeeeeeccccccccccccccc
Confidence            3457999995 899999999999999999999886

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.34  E-value=0.093  Score=44.67  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+++.++|-|++ |+|.++|+.|+..|. ++.+.|-
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~   39 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDL   39 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            4778889998854 899999999999997 4888875

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.33  E-value=0.063  Score=45.84  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d   64 (288)
                      +||+|||+|..|..+|++|...|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5799999999999999999998874 79999874

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.32  E-value=0.46  Score=39.72  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-----CeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gv-----g~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      ||+|.|. |-+|+++++.|+..|.     .++..+|.-.....                        ...+........+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~------------------------~~~~~~~~~~~~~   57 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN------------------------RANLAPVDADPRL   57 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC------------------------GGGGGGGTTCTTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc------------------------HhHhhhhhcCCCe
Confidence            6999985 5599999999999774     45666765322211                        0112222223345


Q ss_pred             eeeecCCCCc--chhhhccCcEEEEecCC-----------------hhhHHHHHHHHHhcCCCc-eEEEEeeecceEE
Q 023036          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCS-----------------VTTKKLINEKCRKLSKRV-AFYTVDCRDSCGE  164 (288)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~dvVi~~~~~-----------------~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G~  164 (288)
                      +....+..+.  .......+|+|+.+...                 ......+-+.|++  .++ .||.+++...+|.
T Consensus        58 ~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~--~~~~~~I~~Ss~~~yg~  133 (322)
T d1r6da_          58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD--AGVGRVVHVSTNQVYGS  133 (322)
T ss_dssp             EEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--TTCCEEEEEEEGGGGCC
T ss_pred             EEEEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHH--cCCceEEEeecceeecC
Confidence            5555554432  23445677887765321                 1112345567777  554 5999999888873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.05  Score=41.94  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=27.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|.-.+.-+-..|...+ ++|.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~   62 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence            35679999999999999988888998765 5664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.26  E-value=0.14  Score=42.28  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=27.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |..+.|+|.| .+|+|.++|+.|+..|.. +.+.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~   38 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYG   38 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            6778889988 558999999999999977 556543

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.24  E-value=0.081  Score=42.46  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCe--EEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~--i~lvD~d~   65 (288)
                      +.|-|||+||.|+.++.+|...|+..  +..+|.|.
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~   37 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDA   37 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchH
Confidence            46889999999999999999999864  44456543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.09  E-value=0.4  Score=38.99  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             CcE-EEEcC-chHHHHHHHHHHHhCCC
Q 023036           32 SHI-LVCGM-KGTVAEFCKNIVLAGVG   56 (288)
Q Consensus        32 ~~V-lIiG~-gglGseiaknL~l~Gvg   56 (288)
                      ++| +|-|+ +|+|.++|+.|+..|..
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~   27 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARH   27 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCcc
Confidence            354 56674 68999999999999986

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.05  E-value=0.062  Score=42.60  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=34.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCccc
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEA   70 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~n   70 (288)
                      +.-++|+|+|+|-.|...++.-...|. .++++|-+.-..+.
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~   67 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQ   67 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHH
Confidence            567899999999999999999999996 59999976554443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.081  Score=43.24  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +..||+|||+|--|-..|..|+..|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 5999875

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.80  E-value=0.79  Score=38.45  Aligned_cols=113  Identities=13%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCc-HHHHHHHHHhhhCCCce
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT-IAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~-Ka~~~~~~l~~lNp~v~  105 (288)
                      ++.-++|||.| .|-+|+++++.|...|- ++..+|....                   +.. ..+.......+.+ .-.
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~~~-------------------~~~~~~~~~~~~~~~~~-~~~   71 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFAT-------------------GHQRNLDEVRSLVSEKQ-WSN   71 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS-------------------CCHHHHHHHHHHSCHHH-HTT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECCCC-------------------cchhhHHHHHHhhhhcc-cCC
Confidence            34457899988 55699999999999996 5777875111                   111 1111111111111 113


Q ss_pred             eeeeecCCCCc--chhhhccCcEEEEecC--Ch---------------hhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          106 VSVEKGDLSSL--DGEFYDKFDVVVVSCC--SV---------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       106 v~~~~~~~~~~--~~~~~~~~dvVi~~~~--~~---------------~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      ++....+..+.  ........+.|+.+..  ..               .....+-+.|++  .++ .+|.+++...+|
T Consensus        72 ~~~~~~d~~d~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~--~~~~~~i~~SS~~vyg  147 (341)
T d1sb8a_          72 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD--AKVQSFTYAASSSTYG  147 (341)
T ss_dssp             EEEEECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--TTCSEEEEEEEGGGGT
T ss_pred             eeEEeeccccccccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHh--cCCceEEEcccceeeC
Confidence            44455554442  1333455666665432  11               112345578888  665 788999988887

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.78  E-value=0.082  Score=40.30  Aligned_cols=33  Identities=12%  Similarity=0.167  Sum_probs=27.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.+|+|.|+|++|.-.+..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            46789999999999999888888887 5777764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.77  E-value=0.068  Score=43.19  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=28.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|+|||+|..|...|..|+..|. +++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            69999999999999999999998 4999986

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.76  E-value=0.14  Score=40.24  Aligned_cols=30  Identities=17%  Similarity=0.089  Sum_probs=24.8

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        32 ~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      ++|||.| .|.+|+.+++.|+..|-. ++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            6899999 578999999999999954 45554

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.47  E-value=0.085  Score=41.98  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=28.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-----eEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg-----~i~lvD~d~   65 (288)
                      ||+|||+|-+|..+|..|+..|..     +.++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            799999999999999999999975     677776544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.42  E-value=0.25  Score=40.84  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+++.++|.| .+|+|.++++.|+..|.. +.+.|.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~   50 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYA   50 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            48899999998 669999999999999976 777774

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.39  E-value=0.79  Score=36.85  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .++||||.|+ |-+|+.+++.|...|. +++.++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R   35 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVR   35 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEC
Confidence            3689999996 6799999999999995 5777765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.33  E-value=0.14  Score=42.19  Aligned_cols=64  Identities=14%  Similarity=0.243  Sum_probs=47.7

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHh---CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLA---GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~---Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v  104 (288)
                      |.++.++|-|+ +|+|.++|+.|++.   |. ++.++|.                      ...+.+.+++.|+..+|..
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r----------------------~~~~l~~~~~~l~~~~~~~   60 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSAR----------------------SESMLRQLKEELGAQQPDL   60 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEEC----------------------CHHHHHHHHHHHHhhcCCc
Confidence            44555555575 59999999999973   53 5777764                      3346788888999989888


Q ss_pred             eeeeeecCCCC
Q 023036          105 RVSVEKGDLSS  115 (288)
Q Consensus       105 ~v~~~~~~~~~  115 (288)
                      ++..+..++.+
T Consensus        61 ~~~~~~~Dvs~   71 (259)
T d1oaaa_          61 KVVLAAADLGT   71 (259)
T ss_dssp             EEEEEECCTTS
T ss_pred             eEEEEEccCCC
Confidence            88888877765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.16  Score=37.74  Aligned_cols=56  Identities=7%  Similarity=-0.057  Sum_probs=37.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH----hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhh
Q 023036           31 KSHILVCGMKGTVAEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l----~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~l  100 (288)
                      .++++|||.|.+|+|+|-.|.+    .|+ ++++++...--   +.+.       .   ++.-++.+.+.+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~---l~~~-------~---~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGN---MGKI-------L---PEYLSNWTMEKVRRE   96 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSST---TTTT-------S---CHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccC---Cccc-------C---CHHHHHHHHHHHHhC
Confidence            5689999999999999999974    465 68988862221   1111       1   444456667777765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.13  E-value=0.094  Score=43.01  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ||+++.++|.|++ |+|.++|+.|+..|.. +.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            6889999999855 7999999999999974 778764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.07  E-value=0.5  Score=39.19  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=26.2

Q ss_pred             CcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +||||.|+.| +|+.+++.|...|. +++.+|.
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~   32 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5899999665 99999999999996 5777873

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.01  E-value=0.31  Score=36.66  Aligned_cols=88  Identities=10%  Similarity=0.161  Sum_probs=51.7

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhC--CCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~G--vg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .+|.|+|+ |-+|.|+++-|...+  ..++..+-               +....   |+.        +...++...+. 
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~---------------s~~~~---Gk~--------i~~~~~~~~~~-   55 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA---------------SAESA---GQR--------MGFAESSLRVG-   55 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE---------------CTTTT---TCE--------EEETTEEEECE-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe---------------ecccC---Ccc--------eeeccccchhc-
Confidence            57999997 569999999998544  33444442               23333   653        22222222211 


Q ss_pred             eecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                            ....+.+++.|+|+.|.....+.....+ ..+  .++.+|+
T Consensus        56 ------~~~~~~~~~~d~vf~a~p~~~s~~~~~~-~~~--~g~~VID   93 (144)
T d2hjsa1          56 ------DVDSFDFSSVGLAFFAAAAEVSRAHAER-ARA--AGCSVID   93 (144)
T ss_dssp             ------EGGGCCGGGCSEEEECSCHHHHHHHHHH-HHH--TTCEEEE
T ss_pred             ------cchhhhhccceEEEecCCcchhhhhccc-ccc--CCceEEe
Confidence                  2234557789999998866555544444 445  5666663

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.87  E-value=0.26  Score=40.60  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|-|++ |+|.++|+.|+..|.. +.++|.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   37 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADV   37 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            678899999955 8999999999999975 888875

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.82  E-value=0.3  Score=39.82  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|.|+ +|+|.++|+.|+..|.. +.++|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   37 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTR   37 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            57889999985 58999999999999965 888875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.70  E-value=0.14  Score=40.07  Aligned_cols=33  Identities=9%  Similarity=0.096  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg-~i~lvD~d   64 (288)
                      .||+|||.|.+|.|+|..|.+.+-+ +|++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3799999999999999999998775 69999753

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.19  Score=42.66  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC----------CeEEEEcCCc
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV----------GSLTLMDDRV   65 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gv----------g~i~lvD~d~   65 (288)
                      ++|.+.+|++.|+|+-|.-+++.|+.+++          ++|.++|.+-
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~G   69 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYG   69 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCC
Confidence            47899999999999999999999888765          4799999854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.32  Score=39.69  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+++.++|-| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r   36 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTAT   36 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            5678888888 558999999999999974 788775

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.15  Score=39.66  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      --|+|||+|-.|.-+|..|++.|. +++|+|..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            348999999999999999999996 59999873

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.29  E-value=0.16  Score=38.73  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      ...+|+|||.|-+|.+.|..+.+.|..+++++-
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~   76 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVF   76 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence            356899999999999999999999999999873

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.25  E-value=0.17  Score=40.06  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...+|+|+|+|++|.-.+..+...|.+++.++|.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            4568999999999999999988999999999986

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.22  E-value=0.15  Score=41.90  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999996 599998743

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.09  E-value=0.15  Score=39.78  Aligned_cols=35  Identities=9%  Similarity=0.084  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      +.+|+|||.|..|.+.|..|++.|.. ..++|....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeecc
Confidence            57899999999999999999999986 677775443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.02  E-value=0.21  Score=35.82  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=26.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv--g~i~lvD~   63 (288)
                      ++++|||.|.+|.|+|..|...+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999998886632  36899875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.88  E-value=0.27  Score=38.23  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+-++|+|+|+|-.|...++...+.| ..++++|-
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~   63 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDI   63 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeC
Confidence            46899999999999999999999999 55999985

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.79  E-value=1.2  Score=37.46  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             cCcEEEEcCc-hHHHHHHHHHHHhCCC-eEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           31 KSHILVCGMK-GTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~g-glGseiaknL~l~Gvg-~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .++|||.|+. =+|+.+++.|...|-. +++.+|.-.-.. +.                       ..+..+.+ -.++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~-~~-----------------------~~~~~~~~-~~i~~   56 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK-----------------------ANLEAILG-DRVEL   56 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG-----------------------GGTGGGCS-SSEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccc-cH-----------------------HHHHHhhc-CCeEE
Confidence            3679999955 5999999999999854 456666311110 00                       01111111 13455


Q ss_pred             eecCCCCc--chhhhccCcEEEEecCC-----------------hhhHHHHHHHHHhcCCCceEEEEeeecceEE
Q 023036          109 EKGDLSSL--DGEFYDKFDVVVVSCCS-----------------VTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (288)
Q Consensus       109 ~~~~~~~~--~~~~~~~~dvVi~~~~~-----------------~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G~  164 (288)
                      +..++.+.  ...++..++.|+.....                 ......+-+.|+.  .++.++...+...+|.
T Consensus        57 ~~~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~--~~~k~i~~ss~~vyg~  129 (346)
T d1oc2a_          57 VVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK--YDIRFHHVSTDEVYGD  129 (346)
T ss_dssp             EECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--HTCEEEEEEEGGGGCC
T ss_pred             EEccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcc--ccccccccccceEecc
Confidence            55555432  24455667776554321                 0112234456777  7788888888877763

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.70  E-value=0.32  Score=37.33  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=26.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d   64 (288)
                      |++-||.|+|+|.+|...++.|... ++.-+.++|..
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            3456899999999999999988763 44434445543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.64  E-value=0.21  Score=39.53  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      .+..++|||+|..|.+.|..+++.|. +++|+|.+.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~~   39 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQAL   39 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCT
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            35679999999999999999999996 5999987543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.60  E-value=0.19  Score=40.38  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      --|+|||+|..|...|..|++.|.. ++|+|...
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~~-V~liEk~~   35 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGAN-VLLLDKGN   35 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            3599999999999999999999985 99998643

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.40  E-value=0.68  Score=39.88  Aligned_cols=76  Identities=9%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHH-HHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNI-VLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL-~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...++.|||+|..+-.-++.+ ...++.++.++|.                      ...+++.+++++++ .+.+.+..
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r----------------------~~~~~~~~~~~l~~-~~g~~v~~  183 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT----------------------DPLATAKLIANLKE-YSGLTIRR  183 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHTT-CTTCEEEE
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEec----------------------ChHHHHHHHHhhhh-ccCCCcee
Confidence            457899999999998777755 5667899988875                      34467777888765 34556555


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                      ..     ..++.+++.|+|+.|+.+
T Consensus       184 ~~-----s~~eav~~ADIi~t~Tas  203 (340)
T d1x7da_         184 AS-----SVAEAVKGVDIITTVTAD  203 (340)
T ss_dssp             CS-----SHHHHHTTCSEEEECCCC
T ss_pred             cC-----CHHHHHhcCCceeecccc
Confidence            42     246788999999988754

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.51  Score=39.09  Aligned_cols=102  Identities=8%  Similarity=0.023  Sum_probs=56.5

Q ss_pred             cCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeee
Q 023036           31 KSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (288)
Q Consensus        31 ~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~  109 (288)
                      ++||||.|++ -+|+.+++.|...|-. ..++|..             ++-|+     ...+.+.+.++...|++-+...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~-vi~~~~~-------------~~~~~-----~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTR-------------DELNL-----LDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCT-------------TTCCT-----TCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCE-EEEecCc-------------hhccc-----cCHHHHHHHHhhcCCCEEEEcc
Confidence            4689999955 5999999999998854 3344421             11122     2234445556666665433221


Q ss_pred             ecCCCCc------chhhhccCcEEEEecCChhhHHHHHHHHHhcCCCc-eEEEEeeecceE
Q 023036          110 KGDLSSL------DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (288)
Q Consensus       110 ~~~~~~~------~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~i-p~i~~~~~G~~G  163 (288)
                      .. ....      ..+++.         .+......+-+.|++  .++ .||.+++...+|
T Consensus        63 ~~-~~~~~~~~~~~~~~~~---------~Nv~gt~~ll~~a~~--~~v~~~i~~SS~~vyg  111 (315)
T d1e6ua_          63 AK-VGGIVANNTYPADFIY---------QNMMIESNIIHAAHQ--NDVNKLLFLGSSCIYP  111 (315)
T ss_dssp             CC-CCCHHHHHHCHHHHHH---------HHHHHHHHHHHHHHH--TTCCEEEEECCGGGSC
T ss_pred             hh-ccccccchhhHHHHHH---------HHHHHHHHHHHHHHH--cCCCEEEEECCceEcC
Confidence            11 1000      011111         122333456678877  776 599999988776

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.11  E-value=0.68  Score=37.03  Aligned_cols=92  Identities=8%  Similarity=0.011  Sum_probs=48.6

Q ss_pred             cCcEEEEcCchHHHH-HHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           31 KSHILVCGMKGTVAE-FCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        31 ~~~VlIiG~gglGse-iaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      .-+|.|||+|..|.. ++..+... ++.=+.|+|.                      ...|++.+++... + +...+..
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~----------------------~~~~a~~~~~~~~-i-~~~~~~~   88 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG----------------------NAEKAKIVAAEYG-V-DPRKIYD   88 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS----------------------CHHHHHHHHHHTT-C-CGGGEEC
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecC----------------------CHHHHHHHHHhhc-c-ccccccc
Confidence            458999999999974 55665543 3322234453                      3335555554431 1 1112222


Q ss_pred             eecCCCCcchhhh--ccCcEEEEecCChhhHHHHHHHHHhcCCCceEE
Q 023036          109 EKGDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (288)
Q Consensus       109 ~~~~~~~~~~~~~--~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i  154 (288)
                      + .++    ++++  .+.|+|++++.+.. ...+...|-+  ++++++
T Consensus        89 ~-~d~----~ell~~~~iD~V~I~tp~~~-H~~~~~~al~--~gk~v~  128 (221)
T d1h6da1          89 Y-SNF----DKIAKDPKIDAVYIILPNSL-HAEFAIRAFK--AGKHVM  128 (221)
T ss_dssp             S-SSG----GGGGGCTTCCEEEECSCGGG-HHHHHHHHHH--TTCEEE
T ss_pred             c-Cch----hhhcccccceeeeeccchhh-hhhHHHHhhh--cchhhh
Confidence            2 111    2333  35889988876543 3444555545  667655

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.06  E-value=0.19  Score=41.88  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ||+++.|+|-|+ +|+|.++|+.|+..|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            478899999985 6999999999999997 58888853

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.03  E-value=0.19  Score=42.47  Aligned_cols=32  Identities=16%  Similarity=0.122  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ...|+|||+|..|..+|+.|...|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            4469999999999999999999999 4899986

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.50  E-value=0.19  Score=41.08  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+++.++|-|+ +|+|.++|+.|+..|.. +.++|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            478899999985 58999999999999975 8888853

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.46  E-value=0.25  Score=41.82  Aligned_cols=35  Identities=11%  Similarity=0.094  Sum_probs=29.9

Q ss_pred             HhcCcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .+++||||.|++| +|+++++.|...|. ++..+|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~   41 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   41 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5789999999665 99999999999997 47787763

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.33  E-value=0.26  Score=38.65  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      --|+|||.|..|.+.|..+++.|.+ ++|+|.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~k-V~vie~   34 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFK-TTCIEK   34 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            3489999999999999999999965 888885

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.21  Score=42.01  Aligned_cols=31  Identities=10%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+|||+|-.|+-+|..|+..|. +++|+|..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            58999999999999999999995 59999863

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.14  E-value=0.17  Score=41.49  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcC-c--hHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGM-K--GTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~-g--glGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|++++|+|.|+ |  |+|.++|+.|+..|.. +.+.+.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFD   41 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            588999999995 3  6999999999999964 8887653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.23  Score=41.11  Aligned_cols=29  Identities=14%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+|||+|-.|...|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 6999986

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.16  Score=41.71  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ||++++++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            68889999988 56999999999999996 58888864

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.11  E-value=0.096  Score=39.42  Aligned_cols=19  Identities=11%  Similarity=0.001  Sum_probs=16.3

Q ss_pred             EEEEcCchHHHHHHHHHHH
Q 023036           34 ILVCGMKGTVAEFCKNIVL   52 (288)
Q Consensus        34 VlIiG~gglGseiaknL~l   52 (288)
                      |-+||+|-+|..++++|..
T Consensus         2 IgfIG~G~mg~~l~~~L~~   20 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD   20 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-
T ss_pred             EEEEeCcHHHHHHHHHHHh
Confidence            5689999999999999855

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.11  E-value=0.25  Score=38.86  Aligned_cols=32  Identities=9%  Similarity=0.104  Sum_probs=28.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      -|+|||+|..|.+.|..+++.|. +++|+|.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            48999999999999999999996 599998643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.25  Score=40.06  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+++.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            37888999998 45899999999999998 58898853

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=87.96  E-value=0.14  Score=43.65  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=34.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh----------CCCeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----------GVGSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~----------Gvg~i~lvD~d~v   66 (288)
                      ++|++.||+|.|+|+.|.-+++.|+.+          |.++|.++|..-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            478999999999999999999999866          5579999997544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=0.74  Score=38.60  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      +++++||-|||| .|. ++..++++|..+++-+|..                      . .+..+++...+.+-.-++..
T Consensus        34 ~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s----------------------~-~~~~a~~~~~~~~~~~~i~~   88 (311)
T d2fyta1          34 FKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS----------------------E-ILYQAMDIIRLNKLEDTITL   88 (311)
T ss_dssp             TTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS----------------------T-HHHHHHHHHHHTTCTTTEEE
T ss_pred             CCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH----------------------H-HHHHHHHHHHHhCCCccceE
Confidence            468899999999 332 5667888999989888861                      1 12233444444444445666


Q ss_pred             eecCCCCcchhhhccCcEEEEe
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVS  130 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~  130 (288)
                      ...+..+... -...||+|+..
T Consensus        89 ~~~~~~~l~~-~~~~~D~Ivse  109 (311)
T d2fyta1          89 IKGKIEEVHL-PVEKVDVIISE  109 (311)
T ss_dssp             EESCTTTSCC-SCSCEEEEEEC
T ss_pred             EEeeHHHhcC-ccccceEEEEe
Confidence            6665544321 12578999874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=87.82  E-value=0.28  Score=39.74  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ...|+|||+|..|...|..|++.|.. ++|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            35699999999999999999999964 8999864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.77  E-value=0.19  Score=41.44  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++++|.|++   |+|.++|+.|+..|.. +.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4889999999963   6999999999999977 888884

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.68  E-value=0.41  Score=36.22  Aligned_cols=31  Identities=13%  Similarity=0.187  Sum_probs=23.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhC--CCeEEEEc
Q 023036           32 SHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMD   62 (288)
Q Consensus        32 ~~VlIiG~-gglGseiaknL~l~G--vg~i~lvD   62 (288)
                      -+|.|+|+ |-+|.|+++-|....  +.++..+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~   35 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA   35 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec
Confidence            37999997 559999999998874  34555544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.58  E-value=0.25  Score=40.38  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+.++|+|-|.|.+|..+|+.|...|.. ++.+|.
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~   70 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV   70 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecc
Confidence            37889999999999999999999999955 666664

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.48  E-value=0.79  Score=37.39  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             EEEE-c-CchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCce
Q 023036           34 ILVC-G-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (288)
Q Consensus        34 VlIi-G-~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~  105 (288)
                      |.|| | .+|+|.++|+.|+..|.. +.|.|.                  -   .+.+++.+++.|.+.++...
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~-V~i~~~------------------~---~~~~~~~~~~~l~~~~~~~~   55 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYH------------------R---SAAEANALSATLNARRPNSA   55 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEES------------------S---CHHHHHHHHHHHHHHSTTCE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC------------------C---CHHHHHHHHHHHHhhcCCce
Confidence            5555 5 569999999999999975 777663                  0   34578888999998887643

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.43  E-value=0.12  Score=44.27  Aligned_cols=40  Identities=20%  Similarity=0.197  Sum_probs=33.9

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC----------CeEEEEcCCcC
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV----------GSLTLMDDRVV   66 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gv----------g~i~lvD~d~v   66 (288)
                      ++|.+.||+|.|+|+-|.-|++.|+.+++          ++|.++|..-+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            47899999999999999999999987733          47999997544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.19  Score=40.98  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +|++++|+|.|++   |+|.++|+.|+..|.. +.+.|.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~   39 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQ   39 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeC
Confidence            4789999999865   6999999999999976 778775

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.14  E-value=0.26  Score=39.94  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        29 L~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      |++++++|-|+ +|+|.++|+.|+..|. ++.++|.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            67899999995 6899999999999997 488888653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.00  E-value=0.42  Score=36.49  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ..+|+|+|+|++|.-.+..+...|...+.++|.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~   65 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV   65 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccc
Confidence            578999999999999999999999999998886

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.93  E-value=0.55  Score=38.79  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+.++|+|-|.|-+|..+++.|...|..-+++-|.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            478999999999999999999999999887788776

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.86  E-value=0.38  Score=37.58  Aligned_cols=39  Identities=13%  Similarity=0.002  Sum_probs=30.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccc
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA   73 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r   73 (288)
                      +|+|||+|-+|..+|-.++ .|. .++.+|.+.=..+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhh
Confidence            6999999999999998776 486 68889986654444543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.76  E-value=1.4  Score=35.49  Aligned_cols=29  Identities=17%  Similarity=0.239  Sum_probs=22.4

Q ss_pred             EEEEc-CchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           34 ILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        34 VlIiG-~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |+|-| .+|+|.++|+.|+..|.. +.+.|.
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~-V~i~~~   33 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCK-VLVNYA   33 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            34445 669999999999999965 667654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.75  E-value=0.26  Score=40.30  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|.|++   |+|.++|+.|+..|.. +.+.|.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~   42 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQ   42 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            688999999975   6999999999999975 777764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.75  E-value=1.1  Score=36.31  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~   63 (288)
                      .++.++|+|-|.|-+|..+|+.|+. .|..-+++.|.
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecC
Confidence            5789999999999999999999986 58776666664

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.74  E-value=0.23  Score=41.22  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~g---glGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |++++++|-|++   |+|.++|+.|+..|.. +.+.|.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            789999999985   7999999999999966 777653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.70  E-value=0.23  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +..+|+|||.|..|.+.|..+++.|.. ++|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            356799999999999999999999985 7888754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.64  E-value=2.3  Score=33.60  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~  110 (288)
                      .++||=+|||. | ..+..|+..|. +++-+|.                      -+.-.+.+.+++.+.|+.  ++...
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~~-~v~gvD~----------------------s~~mi~~a~~~~~~~~~~--i~~~~   94 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERGY-EVVGLDL----------------------HEEMLRVARRKAKERNLK--IEFLQ   94 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred             CCEEEEeCCCC-C-ccchhhcccce-EEEEEee----------------------cccccccccccccccccc--chhee
Confidence            45799999995 4 44667888986 6888885                      223346667777777775  44454


Q ss_pred             cCCCCcchhhhccCcEEEEec
Q 023036          111 GDLSSLDGEFYDKFDVVVVSC  131 (288)
Q Consensus       111 ~~~~~~~~~~~~~~dvVi~~~  131 (288)
                      .+..++.  +-+.||+|++..
T Consensus        95 ~d~~~l~--~~~~fD~I~~~~  113 (251)
T d1wzna1          95 GDVLEIA--FKNEFDAVTMFF  113 (251)
T ss_dssp             SCGGGCC--CCSCEEEEEECS
T ss_pred             hhhhhcc--cccccchHhhhh
Confidence            4443332  225799998864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.63  E-value=0.36  Score=39.68  Aligned_cols=38  Identities=11%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCC
Q 023036           26 QRRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR   64 (288)
Q Consensus        26 q~~L~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d   64 (288)
                      +.+....-|+|||+|..|..+|..|+. .|.+ ++|+|..
T Consensus        28 ~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~   66 (278)
T d1rp0a1          28 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQS   66 (278)
T ss_dssp             HHHHTEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESS
T ss_pred             cccccCCCEEEECCCHHHHHHHHHHHHccCCe-EEEEecC
Confidence            335667889999999999999999997 6986 9999964

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=86.56  E-value=0.28  Score=40.27  Aligned_cols=36  Identities=11%  Similarity=0.052  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .|+.++|+|-|.|.+|+.+|+.|...|..-+++-|.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            588999999999999999999999999775666664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.51  E-value=0.43  Score=38.73  Aligned_cols=74  Identities=12%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             HHhcCcEEEEcCc-hHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCcee
Q 023036           28 RLSKSHILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (288)
Q Consensus        28 ~L~~~~VlIiG~g-glGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v  106 (288)
                      .|++++++|-|++ |+|.++|+.|+..|.. +.++|.+.-...++   +. -.-|+  ....-.+.+.+.+.+....+++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~---~~-~~~Dv--~~~~~v~~~~~~~~~~~g~iDi   76 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGL---FG-VEVDV--TDSDAVDRAFTAVEEHQGPVEV   76 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTS---EE-EECCT--TCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCc---eE-EEEec--CCHHHHHHHHHHHHHhcCCceE
Confidence            4788999999855 8999999999999965 88888754333322   22 23444  1222344555555554434444


Q ss_pred             ee
Q 023036          107 SV  108 (288)
Q Consensus       107 ~~  108 (288)
                      -+
T Consensus        77 LV   78 (237)
T d1uzma1          77 LV   78 (237)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.49  E-value=0.39  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      .-|+|||+|+.|.+.|..+++.|. +++|+|.+.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            458999999999999999999996 5899987543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.40  E-value=2.2  Score=34.98  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=25.6

Q ss_pred             CcEEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++|||.|+.| +|+.+++.|...|.. +..+|.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r   32 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVA   32 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            5899999766 999999999999854 666665

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.27  E-value=0.37  Score=39.46  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      +|+++.++|-| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57889999998 56999999999999997 58888853

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.16  E-value=0.32  Score=40.62  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=27.7

Q ss_pred             cEEEEcCchHHHHHHHHHH-----HhCCCeEEEEcCCc
Q 023036           33 HILVCGMKGTVAEFCKNIV-----LAGVGSLTLMDDRV   65 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~-----l~Gvg~i~lvD~d~   65 (288)
                      -|+|||+|..|+.+|..|+     +.|+. ++|+|...
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence            4999999999999999997     57887 99998643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.11  E-value=0.7  Score=35.25  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=26.0

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +.+|+|.| +|++|.-++.-+-..|...|.+++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~   58 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAG   58 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeec
Confidence            46788878 599999999999999987666543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.08  E-value=0.3  Score=38.25  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      .+.++++.|+|.|.+|.++++-+..-|+ ++..+|+
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~   75 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDP   75 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc-eEEeecC
Confidence            4788999999999999999999988886 4777775

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.43  Score=37.39  Aligned_cols=34  Identities=12%  Similarity=0.109  Sum_probs=29.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      -|+|||.|..|.+.|..+++.|- +++|+|.+.+-
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~G   38 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGA-RAAVVESHKLG   38 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCCC
Confidence            48999999999999999999995 59999976553

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.74  E-value=0.36  Score=40.72  Aligned_cols=31  Identities=16%  Similarity=0.357  Sum_probs=27.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -|+|||.|.-|+-+|+.|+.+|. ++.|++..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~-kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGY-KVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCC-eEEEEecC
Confidence            48999999999999999999997 58888864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.73  E-value=0.33  Score=38.25  Aligned_cols=35  Identities=11%  Similarity=0.112  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEc
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      .+++++|+|||+|..|..+|..++..+....++.-
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            46899999999999999999999999987666654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.70  E-value=0.48  Score=37.30  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      -|+|||.|+.|...|..+++.|-.++.|+|...+
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            4899999999999999999999888999987544

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.65  E-value=0.44  Score=39.44  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      .-|+|||.|..|..+|..|+..|.+ ++|+|...+.
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~~~   51 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAK-VILIEKEPVI   51 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCCC
Confidence            4599999999999999999999975 9999976654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.45  E-value=0.44  Score=37.45  Aligned_cols=31  Identities=6%  Similarity=0.043  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      --|+|||+|+.|...|..+++.|.. ++|+|.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~k-V~lie~   36 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFN-TACVEK   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            3589999999999999999999975 888885

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.37  E-value=0.62  Score=39.03  Aligned_cols=31  Identities=13%  Similarity=0.278  Sum_probs=26.0

Q ss_pred             CcE-EEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           32 SHI-LVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        32 ~~V-lIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++| ||.|++| +|+.+++.|...|. +++.+|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            478 8989776 99999999999996 4777776

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.35  Score=37.35  Aligned_cols=37  Identities=8%  Similarity=0.099  Sum_probs=33.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      |..++|+|+|.|-+|..+|+.+...|.. ++++|.|++
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~   58 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPI   58 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccc
Confidence            6788999999999999999999999965 899988664

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.17  E-value=0.42  Score=33.71  Aligned_cols=33  Identities=9%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEE
Q 023036           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLT   59 (288)
Q Consensus        27 ~~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~   59 (288)
                      ..+++++|+|||.|..|..+|..|+..+-..+.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~   60 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIY   60 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEE
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEE
Confidence            368899999999999999999999877644333

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.95  E-value=1.6  Score=36.84  Aligned_cols=73  Identities=16%  Similarity=0.062  Sum_probs=52.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeee
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~  108 (288)
                      ...++.|+|+|..+-..+..|.. -.+.+|.+++.                      ...+++..++.++..+..+.+. 
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r----------------------~~e~~~~~~~~~~~~~~~~~~~-  180 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV----------------------REKAAKKFVSYCEDRGISASVQ-  180 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHHHTTCCEEEC-
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccC----------------------CHHHHHHHHHHHHhcCCccccc-
Confidence            34679999999999988887764 45788888764                      3347778888888776543221 


Q ss_pred             eecCCCCcchhhhccCcEEEEecCC
Q 023036          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (288)
Q Consensus       109 ~~~~~~~~~~~~~~~~dvVi~~~~~  133 (288)
                              ..+...+.|+||.|+.+
T Consensus       181 --------~~~a~~~aDiV~taT~s  197 (320)
T d1omoa_         181 --------PAEEASRCDVLVTTTPS  197 (320)
T ss_dssp             --------CHHHHTSSSEEEECCCC
T ss_pred             --------hhhhhccccEEEEeccC
Confidence                    23456789999998754

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=84.88  E-value=2.2  Score=34.08  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      +|||.|+ |-+|+.+++.|...|  ++..+|...-.       +   ..|+     ...+.+.+.++..+|++-+..-  
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~-------~---~~Dl-----~~~~~~~~~i~~~~~D~Vih~A--   62 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE-------F---CGDF-----SNPKGVAETVRKLRPDVIVNAA--   62 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS-------S---CCCT-----TCHHHHHHHHHHHCCSEEEECC--
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc-------c---cCcC-----CCHHHHHHHHHHcCCCEEEEec--
Confidence            6999996 569999999998766  56666543211       1   1223     1234455666667776433321  


Q ss_pred             CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEEeeecceE
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~~~~G~~G  163 (288)
                      ..... .......+..  -..+......+.+.|++  .++.++...+...++
T Consensus        63 a~~~~-~~~~~~~~~~--~~~n~~~~~~l~~~~~~--~~~~~~~~ss~~~~~  109 (298)
T d1n2sa_          63 AHTAV-DKAESEPELA--QLLNATSVEAIAKAANE--TGAWVVHYSTDYVFP  109 (298)
T ss_dssp             CCCCH-HHHTTCHHHH--HHHHTHHHHHHHHHHTT--TTCEEEEEEEGGGSC
T ss_pred             ccccc-cccccCcccc--ccccccccccchhhhhc--ccccccccccccccc
Confidence            11100 0000000000  00123334567788888  888888877766554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.28  E-value=0.49  Score=38.09  Aligned_cols=37  Identities=11%  Similarity=-0.003  Sum_probs=29.8

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEcCCcCC
Q 023036           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (288)
Q Consensus        30 ~~~~VlIiG~-gglGseiaknL~l~Gvg~i~lvD~d~v~   67 (288)
                      +.++|+|.|+ +|+|.++++.|+..|.. +.++|...-+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccc
Confidence            3678999995 58999999999999975 7788764433

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.23  E-value=0.22  Score=37.53  Aligned_cols=28  Identities=11%  Similarity=0.164  Sum_probs=25.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCe
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGS   57 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~   57 (288)
                      ..+||+|||.|.+|+++|..+++.|...
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4579999999999999999999999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.08  E-value=0.54  Score=35.59  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=27.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -|+|||.|..|.+.|-.+++.|.. ++|+|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            489999999999999999999986 777875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.01  E-value=1.6  Score=36.76  Aligned_cols=77  Identities=13%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceee
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      -+++++||-||||. | .++..++++|..+++.+|.                      . ..++.+++..++.+-.-+++
T Consensus        36 ~~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~----------------------s-~~~~~a~~~~~~~~~~~~i~   90 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDM----------------------S-SIIEMAKELVELNGFSDKIT   90 (328)
T ss_dssp             HHTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEES----------------------S-THHHHHHHHHHHTTCTTTEE
T ss_pred             cCCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeC----------------------C-HHHHHHHHHHHHhCccccce
Confidence            35789999999993 3 3456778899998988875                      1 13455566666666555677


Q ss_pred             eeecCCCCcchhhhccCcEEEEe
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVS  130 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~  130 (288)
                      ....+..+.... -..+|+|+..
T Consensus        91 ~i~~~~~~l~~~-~~~~D~i~se  112 (328)
T d1g6q1_          91 LLRGKLEDVHLP-FPKVDIIISE  112 (328)
T ss_dssp             EEESCTTTSCCS-SSCEEEEEEC
T ss_pred             EEEeehhhccCc-ccceeEEEEE
Confidence            776665543211 2468988874

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=83.69  E-value=4.1  Score=30.27  Aligned_cols=28  Identities=21%  Similarity=0.148  Sum_probs=19.7

Q ss_pred             chhhhccCcEEEEecCChhhHHHHHHHH
Q 023036          117 DGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (288)
Q Consensus       117 ~~~~~~~~dvVi~~~~~~~~~~~i~~~~  144 (288)
                      +.+.++++|+|+.|..+..+.....++.
T Consensus        58 ~~~~~~~~DvvF~alp~~~s~~~~~~l~   85 (147)
T d1mb4a1          58 DIESLKQLDAVITCQGGSYTEKVYPALR   85 (147)
T ss_dssp             CHHHHTTCSEEEECSCHHHHHHHHHHHH
T ss_pred             chhhhccccEEEEecCchHHHHHhHHHH
Confidence            3456789999999987766655554444

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.41  Score=32.25  Aligned_cols=33  Identities=9%  Similarity=-0.051  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~   65 (288)
                      ++|.|+|.|-+|..++..-...|+. +.++|++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence            5799999999999999999999988 78888754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=4.6  Score=29.89  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=18.7

Q ss_pred             hhhhccCcEEEEecCChhhHHHHHHHH
Q 023036          118 GEFYDKFDVVVVSCCSVTTKKLINEKC  144 (288)
Q Consensus       118 ~~~~~~~dvVi~~~~~~~~~~~i~~~~  144 (288)
                      .+.++++|+|+.|..+..+.....+++
T Consensus        60 ~~~~~~~DivF~a~~~~~s~~~~~~~~   86 (146)
T d1t4ba1          60 LEALKALDIIVTCQGGDYTNEIYPKLR   86 (146)
T ss_dssp             HHHHHTCSEEEECSCHHHHHHHHHHHH
T ss_pred             hhhhhcCcEEEEecCchHHHHhhHHHH
Confidence            445789999999986655555544444

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=83.36  E-value=0.62  Score=37.76  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEc
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMD   62 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD   62 (288)
                      +..|+|.| .||+|.++++.|+..|..++.|+-
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~   41 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS   41 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            45788888 679999999999999998888863

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.26  E-value=0.15  Score=37.57  Aligned_cols=34  Identities=12%  Similarity=0.054  Sum_probs=25.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEcCC
Q 023036           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR   64 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l-~Gvg~i~lvD~d   64 (288)
                      +-+|+|+|+|.+|..+++.+-. .|..=+.++|++
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd   37 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD   37 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc
Confidence            3489999999999999987643 355556667874

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.25  E-value=0.69  Score=35.92  Aligned_cols=32  Identities=13%  Similarity=0.079  Sum_probs=28.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      --|+|||.|+.|...|..+++.|.+ +.|+|..
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~-V~viE~~   35 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLK-TALIEKY   35 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            3489999999999999999999965 8888864

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.20  E-value=0.47  Score=38.59  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             EEEEcCch-HHHHHHHHHHHhCCCeEEEEcC
Q 023036           34 ILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        34 VlIiG~gg-lGseiaknL~l~Gvg~i~lvD~   63 (288)
                      |||.|+.| +|+.+++.|+..|...++.+|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            78888666 9999999999999888999984

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.79  E-value=0.67  Score=36.97  Aligned_cols=34  Identities=15%  Similarity=0.044  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC--eEEEEcCCc
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gvg--~i~lvD~d~   65 (288)
                      ++|+|||.|+.|...|...+++|..  +++++|.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            4799999999999999999999985  578888643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.59  E-value=0.55  Score=37.13  Aligned_cols=31  Identities=10%  Similarity=0.038  Sum_probs=27.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -|+|||+|+.|...|.++++.|.. +.|+|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCC-EEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            389999999999999999999976 8888753

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.39  E-value=0.7  Score=36.51  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=27.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      -|+|||.|+.|.+.|..+++.|. +++|+|.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~   37 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVER   37 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            38999999999999999999997 5899885

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.27  E-value=0.61  Score=39.33  Aligned_cols=37  Identities=8%  Similarity=0.084  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      .|+.++|+|-|.|-+|..+|+.|...|..=+++.|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            3678999999999999999999999997767776753

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=0.83  Score=36.04  Aligned_cols=35  Identities=9%  Similarity=0.075  Sum_probs=30.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEcCCcC
Q 023036           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVV   66 (288)
Q Consensus        32 ~~VlIiG~gglGseiaknL~l~Gv-g~i~lvD~d~v   66 (288)
                      .+++|||.|..|.++|..|...|. ++|++++.+..
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            468999999999999999998887 48999986543

>d1rooa_ g.19.1.1 (A:) Sea anemone toxin k {Sun anemone (Stichodactyla helianthus), SHK [TaxId: 6123]}

class: Small proteins
fold: Crisp domain-like
superfamily: Crisp domain-like
family: Sea anemone toxin k
domain: Sea anemone toxin k
species: Sun anemone (Stichodactyla helianthus), SHK [TaxId: 6123]

Probab=82.15  E-value=0.093  Score=29.01  Aligned_cols=12  Identities=50%  Similarity=0.933  Sum_probs=9.4

Q ss_pred             ccchhccccCCC
Q 023036          275 LLSLFQCRHSMH  286 (288)
Q Consensus       275 ~~~~~~~~~~~~  286 (288)
                      +-..|||||||.
T Consensus        11 ~ct~frcr~smk   22 (35)
T d1rooa_          11 RCTAFQCKHSMK   22 (35)
T ss_dssp             GCCHHHHHHCHH
T ss_pred             hhhhhhhhhhHH
Confidence            445799999983

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.13  E-value=0.81  Score=38.12  Aligned_cols=35  Identities=9%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh--CCCeEEEEcCC
Q 023036           29 LSKSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDR   64 (288)
Q Consensus        29 L~~~~VlIiG~gglGseiaknL~l~--Gvg~i~lvD~d   64 (288)
                      -.+..|+|||+|..|...|..|++-  |.. ++|+|..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~-~~~~~~~   84 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESS   84 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEEcC
Confidence            3466799999999999999999964  655 9999874

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.85  E-value=0.55  Score=37.70  Aligned_cols=35  Identities=11%  Similarity=0.081  Sum_probs=29.0

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEcCCcC
Q 023036           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (288)
Q Consensus        31 ~~~VlIiG-~gglGseiaknL~l~Gvg~i~lvD~d~v   66 (288)
                      +.||+|.| .+|+|.++++.|+..|.. +.++|...-
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCch
Confidence            46899998 458999999999999965 888886543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.56  E-value=1.7  Score=33.67  Aligned_cols=104  Identities=8%  Similarity=-0.085  Sum_probs=54.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHh-CCCeEEEEcCCcCCcccccccccCCCCccccCCCcHHHHHHHHHhhhCCCceeeeeec
Q 023036           33 HILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~-Gvg~i~lvD~d~v~~~nl~r~f~~~~~di~~~G~~Ka~~~~~~l~~lNp~v~v~~~~~  111 (288)
                      ||.|.|.|-+|..+++.|... .+.-+.|.|...-...   ...+.....+  .+......   .+.+..  ..+     
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~---~~~~~~~~~~--~~~~~~~~---~~~~~~--i~v-----   67 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA---FIAHRRGIRI--YVPQQSIK---KFEESG--IPV-----   67 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH---HHHHHTTCCE--ECCGGGHH---HHHTTT--CCC-----
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHH---HHhcccCcce--eccCccce---eccccc--eec-----
Confidence            799999999999999999864 3444444454221110   0001011111  01111111   111111  111     


Q ss_pred             CCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEEE
Q 023036          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (288)
Q Consensus       112 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~~  156 (288)
                        ....++.+.+.|+||.|+.....+.....+. +  .++++|..
T Consensus        68 --~g~~~~~~~~vDiViecTG~f~~~e~a~~hl-~--~G~KvIi~  107 (178)
T d1b7go1          68 --AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYL-Q--LQRNAIFQ  107 (178)
T ss_dssp             --CCCHHHHHHHCSEEEECCSTTHHHHHHHHHH-H--TTCEEEEC
T ss_pred             --CCchhhhhhcCCEEEECCCCcCCHHHHHHHH-H--cCCEEEEE
Confidence              1123555678999999998877776655544 4  55676653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.31  E-value=4.4  Score=29.27  Aligned_cols=35  Identities=23%  Similarity=0.143  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC----chHHHHHHHHHHHhCCCeEEEEcC
Q 023036           29 LSKSHILVCGM----KGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        29 L~~~~VlIiG~----gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      +.-++|.|||+    +..|..+++||...|-+++..|-+
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP   44 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI   44 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence            45678999996    678999999997766678888866

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.30  E-value=3.2  Score=31.71  Aligned_cols=104  Identities=10%  Similarity=-0.035  Sum_probs=54.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhC-CCeEEEEcCCcCCcccccccccCCC-CccccCC-CcHHHHHHHHHhhhCCCceee
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPP-DENVYGG-KTIAEVCCDSLKDFNPMVRVS  107 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~G-vg~i~lvD~d~v~~~nl~r~f~~~~-~di~~~G-~~Ka~~~~~~l~~lNp~v~v~  107 (288)
                      ..||.|.|.|-+|--+++.|.... +.-+.|.|...-....    .+... -++ ..+ ..+.....    +..-     
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~----~l~~~~~~~-~~~~~~~~~~~~----~~~~-----   67 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAY----RAKELGIPV-YAASEEFIPRFE----KEGF-----   67 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHH----HHHHTTCCE-EESSGGGHHHHH----HHTC-----
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHH----HhhhcCcee-ecccccceeeec----ccCc-----
Confidence            458999999999999999886532 3333344432111100    00000 011 001 01111111    1100     


Q ss_pred             eeecCCCCcchhhhccCcEEEEecCChhhHHHHHHHHHhcCCCceEEE
Q 023036          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (288)
Q Consensus       108 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~i~~~~~~~~~~ip~i~  155 (288)
                          .......+.+++.|+||.|+..+........+...   +++.|.
T Consensus        68 ----~~~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~---G~k~Vi  108 (172)
T d2czca2          68 ----EVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKA---GVKAIF  108 (172)
T ss_dssp             ----CCSCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHH---TCEEEE
T ss_pred             ----cccchhhhhhccCCEEEECCCCCCCHHHHHHHHHc---CCCEEE
Confidence                11112355678999999999998888777666543   556554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.09  E-value=0.75  Score=34.25  Aligned_cols=36  Identities=8%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             HHhcCcEEEE--cCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           28 RLSKSHILVC--GMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        28 ~L~~~~VlIi--G~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      ..-.++|+|+  |.|-+|+|+|..|+..|. ++||+...
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~   73 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGV   73 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecC
Confidence            3345667776  888999999999999995 59999874

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=80.99  E-value=0.76  Score=35.94  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcC
Q 023036           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (288)
Q Consensus        30 ~~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~   63 (288)
                      ++++++|+|+||.|-+++..+-..|...+.++|+
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd   34 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDD   34 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCC
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcC
Confidence            4689999999999999999999999988888876

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.18  E-value=0.8  Score=38.83  Aligned_cols=31  Identities=19%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEcCC
Q 023036           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (288)
Q Consensus        33 ~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d   64 (288)
                      -|+|||.|.-|+-+|..|+.+|.. ++|++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIP-TQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            389999999999999999999975 8888853

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.01  E-value=0.85  Score=37.97  Aligned_cols=38  Identities=13%  Similarity=-0.024  Sum_probs=32.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEcCCcCCcc
Q 023036           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE   69 (288)
Q Consensus        31 ~~~VlIiG~gglGseiaknL~l~Gvg~i~lvD~d~v~~~   69 (288)
                      ..-|+|||.|..|.-.|..++..|.. ++|++...+...
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g   42 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRS   42 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGS
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCC
Confidence            34599999999999999999999985 999998776544