Citrus Sinensis ID: 023059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEcccEEEEEEcccccccccccccccEEEccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEcccccccHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccccccccccccccHcEEEEEEEEcccccHHHcHHHHHHccccccHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEcccccccccc
Coil and Loop (DISEMBL)
mnfnnvkvpkmpgggaVSALIKVGVIGGLGLYAATHSlynvegghraIMFNRIvgvkdkvypegthlmipwferpviydvrarpnlvesttgshdlqMVKIGLRvltrpvadqlPTIYRTLGenynervlpSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNialddvsitsltfgkeFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKssnkvylnADDLLLNLQEMKLDNSQ
Flexible Loop (DISEMBL)
mnfnnvkvpkmpgGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVesttgshdlqmVKIGLrvltrpvadQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNasqlitqretvsREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQtiskssnkvylNADDLLLNlqemkldnsq
Low Complexity Region (SEG)
MNFNNVKVPKMPGGGAVSAlikvgvigglglYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ
Disordered region (IsUnstruct)
**************GAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVE*******GAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNL*********
Disordered Region (DISOPRED)
***************AVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLV******HDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIV**************QGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQ*ISKSSNKVYLNADDLL************
Disordered Region (DISEMBL)
MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ
Disordered Region (DISPRO)
**FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	288	2.2.26 [Sep-21-2011]
Q9ZNT7	286	Prohibitin-2, mitochondri	yes	no	0.982	0.989	0.828	1e-132
O49460	288	Prohibitin-1, mitochondri	no	no	0.982	0.982	0.876	1e-132
Q9SIL6	286	Prohibitin-6, mitochondri	no	no	0.975	0.982	0.828	1e-131
Q9FFH5	278	Prohibitin-7, mitochondri	no	no	0.965	1.0	0.780	1e-122
Q54Q31	293	Prohibitin-2 OS=Dictyoste	yes	no	0.979	0.962	0.590	1e-89
A9UMS3	301	Prohibitin-2 OS=Xenopus t	yes	no	0.947	0.906	0.565	2e-87
Q5XIH7	299	Prohibitin-2 OS=Rattus no	yes	no	0.940	0.906	0.550	1e-85
O35129	299	Prohibitin-2 OS=Mus muscu	yes	no	0.940	0.906	0.550	1e-85
Q99623	299	Prohibitin-2 OS=Homo sapi	yes	no	0.940	0.906	0.550	1e-85
Q2HJ97	299	Prohibitin-2 OS=Bos tauru	yes	no	0.940	0.906	0.550	5e-85

>sp|Q9ZNT7|PHB2_ARATH Prohibitin-2, mitochondrial OS=Arabidopsis thaliana GN=PHB2 PE=1 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/285 (82%), Positives = 265/285 (92%), Gaps = 2/285 (0%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           M+FN  KVP +PG  A+SAL+KV VIGGLG+YA T+SLYNV+GGHRA+MFNR+ G+K+KV
Sbjct: 1   MSFN--KVPNIPGAPALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEKV 58

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH M+PWFERP+IYDVRARP LVESTTGSHDLQMVKIGLRVLTRP+ D+LP IYRT
Sbjct: 59  YPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYRT 118

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+ F+IALDDVS
Sbjct: 119 LGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVS 178

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           IT+LTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQD++ A+IRAQGEA SAQLIGQAIA
Sbjct: 179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
            N AFITLRKIEAAREIAQTI++S+NKVYL+++DLLLNLQEM L+
Sbjct: 239 NNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLE 283

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|O49460|PHB1_ARATH Prohibitin-1, mitochondrial OS=Arabidopsis thaliana GN=PHB1 PE=1 SV=1

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 267/283 (94%)

Query: 3   FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYP 62
            NNVKVPK+PGGGA+S L+KVG+IGGLGLY ATHSLYNVEGGHRAIMFNR+VG+KDKVYP
Sbjct: 1   MNNVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYP 60

Query: 63  EGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLG 122
           EGTHLMIPWFERPVIYDVRARP LVEST+GS DLQMVKIGLRVLTRP+ADQLP IYR+LG
Sbjct: 61  EGTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSIT 182
           ENY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAA FN+ALDDVSIT
Sbjct: 121 ENYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDVSIT 180

Query: 183 SLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKN 242
           +LTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQDK+ A+IRAQGEA SAQLIGQAIA N
Sbjct: 181 NLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
            AFITLRKIEAAREIAQTI+ S+NKVYL++DDLLLNLQ M LD
Sbjct: 241 QAFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL6|PHB6_ARATH Prohibitin-6, mitochondrial OS=Arabidopsis thaliana GN=PHB6 PE=1 SV=1

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/285 (82%), Positives = 261/285 (91%), Gaps = 4/285 (1%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNF NVKVPK PGGG ++A+    VIGGL LY ATH+LYNV+GGHRAI+FNR+VG+KDKV
Sbjct: 1   MNFKNVKVPKGPGGGVIAAV----VIGGLSLYGATHTLYNVDGGHRAIVFNRLVGIKDKV 56

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTHLMIPWFERP+IYDVRA+P LVEST+GS DLQMVKIGLRVLTRP+ADQLP +YR+
Sbjct: 57  YPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRS 116

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAA F+IALDDVS
Sbjct: 117 LGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVS 176

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           IT LTFGKEFT AIE KQVAAQEAERAKFIVEKAEQDK+ A+IRA+GEA SAQLIGQAIA
Sbjct: 177 ITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIA 236

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
            N AF+TLRKIEAAREIAQTIS+S+NKVYL+++DLLLNLQ M LD
Sbjct: 237 NNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH5|PHB7_ARATH Prohibitin-7, mitochondrial OS=Arabidopsis thaliana GN=PHB7 PE=1 SV=1

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/278 (78%), Positives = 241/278 (86%)

Query: 3   FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYP 62
            N  KVP +PG  A+SAL+K+GVIGGLGLY    S+YNV+GGHRAI+FNR  G+KD+VYP
Sbjct: 1   MNVKKVPNVPGSPALSALLKLGVIGGLGLYCIGSSMYNVDGGHRAIVFNRFTGIKDRVYP 60

Query: 63  EGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLG 122
           EGTH  IP FER +IYDVR+RP +  S TGS+DLQ V IGLRVLTRP+ D+LP IYRTLG
Sbjct: 61  EGTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYRTLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSIT 182
           +NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDVSIT
Sbjct: 121 QNYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDVSIT 180

Query: 183 SLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKN 242
           +L FGKEFT AIE KQVAAQEAERAKFIVEKAEQDKK AIIRAQGEA SAQLIGQAIA N
Sbjct: 181 NLKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQ 280
            AFITLRKIEAAREIAQTI+KS+NKVYLN+ DLL++ Q
Sbjct: 241 EAFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54Q31|PHB2_DICDI Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/288 (59%), Positives = 216/288 (75%), Gaps = 6/288 (2%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           +NFNN+  PK+P G        + + G   L  +  SL NVEGGHRAI+FNR VG+K+KV
Sbjct: 8   VNFNNI--PKLPKGSFGGGFGLLALGGVGLLALS--SLVNVEGGHRAIVFNRFVGIKNKV 63

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           Y EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRT
Sbjct: 64  YNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRT 123

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA  FNI LDDVS
Sbjct: 124 LGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVS 183

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           IT L FG+E+  AIEAKQVA QEAERA+F+VEKA QDK+  I++A+GEA SAQLI  AI 
Sbjct: 184 ITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAIK 243

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ 288
           ++P  + LR +EA++EIA  +SKS NK+Y++ + LLLN     L+N+Q
Sbjct: 244 QSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN--GFDLNNNQ 289

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|A9UMS3|PHB2_XENTR Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/276 (56%), Positives = 211/276 (76%), Gaps = 3/276 (1%)

Query: 7   KVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGT 65
           ++P  P G   +  + +G   G   YA   S++ VEGGHRAI FNRI GV+ D +  EG 
Sbjct: 11  RLPAGPRGMGTAMKLLLG--AGAVAYAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGL 68

Query: 66  HLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENY 125
           H   PWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP+A +LP +Y+ LG +Y
Sbjct: 69  HFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDY 128

Query: 126 NERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLT 185
           +ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+I LDDV+IT L+
Sbjct: 129 DERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSIILDDVAITELS 188

Query: 186 FGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAF 245
           F +E+T A+E+KQVA QEA+RA+F+VEKA+QD+K  I++A+GEA +A++IG A++KNP +
Sbjct: 189 FSREYTAAVESKQVAQQEAQRAQFLVEKAKQDQKQKIVQAEGEAAAAKMIGDALSKNPGY 248

Query: 246 ITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE 281
           + LR+I AA+ IA+TI+ S N+VYLNAD L+LNLQ+
Sbjct: 249 LKLRRIRAAQSIAKTIASSQNRVYLNADSLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XIH7|PHB2_RAT Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/278 (55%), Positives = 212/278 (76%), Gaps = 7/278 (2%)

Query: 7   KVPKMPGG--GAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPE 63
           ++P  P G   A+  L+  G +     Y    S++ VEGGHRAI FNRI GV+ D +  E
Sbjct: 11  RLPSGPRGMGTALKLLLGAGAVA----YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAE 66

Query: 64  GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
           G H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG 
Sbjct: 67  GLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGL 126

Query: 124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
           +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT 
Sbjct: 127 DYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITE 186

Query: 184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
           L+F +E+T A+EAKQVA QEA+RA+F+VEKA+Q+++  I++A+GEA +A+++G+A++KNP
Sbjct: 187 LSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNP 246

Query: 244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE 281
            +I LRKI AA+ I++TI+ S N++YL AD+L+LNLQ+
Sbjct: 247 GYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Rattus norvegicus (taxid: 10116)

>sp|O35129|PHB2_MOUSE Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/278 (55%), Positives = 212/278 (76%), Gaps = 7/278 (2%)

Query: 7   KVPKMPGG--GAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPE 63
           ++P  P G   A+  L+  G +     Y    S++ VEGGHRAI FNRI GV+ D +  E
Sbjct: 11  RLPAGPRGMGTALKLLLGAGAVA----YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAE 66

Query: 64  GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
           G H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG 
Sbjct: 67  GLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGL 126

Query: 124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
           +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT 
Sbjct: 127 DYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITE 186

Query: 184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
           L+F +E+T A+EAKQVA QEA+RA+F+VEKA+Q+++  I++A+GEA +A+++G+A++KNP
Sbjct: 187 LSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNP 246

Query: 244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE 281
            +I LRKI AA+ I++TI+ S N++YL AD+L+LNLQ+
Sbjct: 247 GYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Mus musculus (taxid: 10090)

>sp|Q99623|PHB2_HUMAN Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/278 (55%), Positives = 212/278 (76%), Gaps = 7/278 (2%)

Query: 7   KVPKMPGG--GAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPE 63
           ++P  P G   A+  L+  G +     Y    S++ VEGGHRAI FNRI GV+ D +  E
Sbjct: 11  RLPAGPRGMGTALKLLLGAGAVA----YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAE 66

Query: 64  GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
           G H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG 
Sbjct: 67  GLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGL 126

Query: 124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
           +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT 
Sbjct: 127 DYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITE 186

Query: 184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
           L+F +E+T A+EAKQVA QEA+RA+F+VEKA+Q+++  I++A+GEA +A+++G+A++KNP
Sbjct: 187 LSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNP 246

Query: 244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE 281
            +I LRKI AA+ I++TI+ S N++YL AD+L+LNLQ+
Sbjct: 247 GYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases (By similarity). Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Homo sapiens (taxid: 9606)

>sp|Q2HJ97|PHB2_BOVIN Prohibitin-2 OS=Bos taurus GN=PHB2 PE=2 SV=1

 Score =  314 bits (804), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 153/278 (55%), Positives = 212/278 (76%), Gaps = 7/278 (2%)

Query: 7   KVPKMPGG--GAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPE 63
           ++P  P G   A+  L+  G +     Y    S++ VEGGHRAI FNRI GV+ D +  E
Sbjct: 11  RLPSGPRGMGTALKLLLGAGAVA----YGIRESVFTVEGGHRAIFFNRIGGVQQDTILAE 66

Query: 64  GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
           G H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG 
Sbjct: 67  GLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGL 126

Query: 124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
           +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT 
Sbjct: 127 DYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITE 186

Query: 184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
           L+F +E+T A+EAKQVA QEA+RA+F+VEKA+Q+++  I++A+GEA +A+++G+A++KNP
Sbjct: 187 LSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGEALSKNP 246

Query: 244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQE 281
            +I LRKI AA+ I++TI+ S N++YL AD+L+LNLQ+
Sbjct: 247 GYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
224095604	290	predicted protein [Populus trichocarpa]	0.996	0.989	0.871	1e-144
255553601	290	prohibitin, putative [Ricinus communis]	0.989	0.982	0.866	1e-143
357474343	293	Prohibitin 1-like protein [Medicago trun	0.996	0.979	0.843	1e-142
77416945	296	unknown [Solanum tuberosum]	0.996	0.969	0.833	1e-138
71370259	290	PHB2 [Nicotiana benthamiana]	0.934	0.927	0.881	1e-137
449444062	290	PREDICTED: prohibitin-2-like isoform 1 [	0.996	0.989	0.846	1e-136
388507410	287	unknown [Medicago truncatula]	0.993	0.996	0.835	1e-135
359806334	289	uncharacterized protein LOC100811958 [Gl	0.930	0.927	0.869	1e-134
356543247	289	PREDICTED: prohibitin-2-like [Glycine ma	0.930	0.927	0.873	1e-133
147771517	291	hypothetical protein VITISV_005691 [Viti	0.996	0.986	0.885	1e-133

>gi|224095604|ref|XP_002310417.1| predicted protein [Populus trichocarpa] gi|118484973|gb|ABK94351.1| unknown [Populus trichocarpa] gi|222853320|gb|EEE90867.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/287 (87%), Positives = 268/287 (93%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNF NVKVP +PGGGA+  LIK+GVIGGLGLY A +SLYNV+GGHRAIMFNRIVGVKDKV
Sbjct: 1   MNFKNVKVPNLPGGGAIGTLIKLGVIGGLGLYGAANSLYNVDGGHRAIMFNRIVGVKDKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH M+PWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPVADQLP IYRT
Sbjct: 61  YPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADQLPEIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA  FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAVNFNIALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQDKK A+IRA+GEATSAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAIA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNS 287
            NPAFITLRKIEAAREIA TIS S+NKV+L++ DLLLNLQ+M+L+ +
Sbjct: 241 NNPAFITLRKIEAAREIAHTISNSANKVFLDSGDLLLNLQKMELETT 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553601|ref|XP_002517841.1| prohibitin, putative [Ricinus communis] gi|223542823|gb|EEF44359.1| prohibitin, putative [Ricinus communis]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/285 (86%), Positives = 271/285 (95%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNFNNVKVPK+PGGGA S+LIK+  IGGL +YAA +SLYNV+GGHRAIMFNR+VGVKDKV
Sbjct: 1   MNFNNVKVPKVPGGGAASSLIKLSAIGGLVVYAAANSLYNVDGGHRAIMFNRLVGVKDKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH M+PWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPVA++LPTIYRT
Sbjct: 61  YPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVANELPTIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAA FN+ALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNLALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           IT+LTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQDKK A+IRA+GEATSAQLIGQAIA
Sbjct: 181 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAIA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
            NPAFITLRKIEAAREIA TI+ S+NKV+LN++DLLLNLQ+M+L+
Sbjct: 241 NNPAFITLRKIEAAREIAHTIANSANKVFLNSEDLLLNLQKMELE 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474343|ref|XP_003607456.1| Prohibitin 1-like protein [Medicago truncatula] gi|355508511|gb|AES89653.1| Prohibitin 1-like protein [Medicago truncatula]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/287 (84%), Positives = 270/287 (94%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNFNN+K+PK+PGGG +SAL+KV ++GGL +Y AT++LYNVEGGHRAI+FNRIVGVKDKV
Sbjct: 4   MNFNNMKIPKVPGGGGISALLKVSILGGLAVYGATNTLYNVEGGHRAIVFNRIVGVKDKV 63

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH+MIPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV DQLPT+YRT
Sbjct: 64  YPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 123

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLK+VVAQYNASQLITQRE VSREIRKILTERA+ FNIALDDVS
Sbjct: 124 LGENYNERVLPSIIHETLKSVVAQYNASQLITQREAVSREIRKILTERASQFNIALDDVS 183

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFG+EFT AIEAKQVAAQEAERAKF+VEKAEQDK+ AIIRAQGEATSAQLIGQAIA
Sbjct: 184 ITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEATSAQLIGQAIA 243

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNS 287
            NPAFI LRKIEAAREIA  I+ S+NKV+LN++DLLLNLQE+  ++S
Sbjct: 244 NNPAFIDLRKIEAAREIAVLIANSANKVFLNSEDLLLNLQELTSESS 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416945|gb|ABA81868.1| unknown [Solanum tuberosum]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/294 (83%), Positives = 263/294 (89%), Gaps = 7/294 (2%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MN N+VKVPKMPGGGA SALIK GVI GLG+Y   +SLYNVEGGHRAI+FNRI GVK+KV
Sbjct: 1   MNLNSVKVPKMPGGGATSALIKFGVIAGLGVYGVANSLYNVEGGHRAIVFNRIGGVKNKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH MIPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV+DQLPT+YR+
Sbjct: 61  YPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVSDQLPTVYRS 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAA FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ A+IRAQGEA SAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLL-------NLQEMKLDNS 287
            NPAFITLRKIEAAREIAQTIS ++NKVYL+A    L        LQE  LD++
Sbjct: 241 NNPAFITLRKIEAAREIAQTISHAANKVYLSAMICCLTFRTSTWTLQESDLDSA 294

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71370259|gb|AAZ30377.1| PHB2 [Nicotiana benthamiana]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/269 (88%), Positives = 253/269 (94%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MN NNVKVPKMPGGGA SALIK+GV+ GLG+Y   +SLYNV+GGHRAI+FNRI+GVKDKV
Sbjct: 1   MNLNNVKVPKMPGGGAASALIKLGVVAGLGVYGVANSLYNVDGGHRAIVFNRIIGVKDKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH MIPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV DQLPT+YRT
Sbjct: 61  YPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAA FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ AIIRAQGEA SAQLIGQ+IA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQSIA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVY 269
            NPAFITLRKIEAAREIAQT+S ++NKVY
Sbjct: 241 NNPAFITLRKIEAAREIAQTMSHAANKVY 269

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444062|ref|XP_004139794.1| PREDICTED: prohibitin-2-like isoform 1 [Cucumis sativus] gi|449444064|ref|XP_004139795.1| PREDICTED: prohibitin-2-like isoform 2 [Cucumis sativus] gi|449444066|ref|XP_004139796.1| PREDICTED: prohibitin-2-like isoform 3 [Cucumis sativus] gi|449507448|ref|XP_004163035.1| PREDICTED: prohibitin-2-like isoform 1 [Cucumis sativus] gi|449507452|ref|XP_004163036.1| PREDICTED: prohibitin-2-like isoform 2 [Cucumis sativus] gi|449507457|ref|XP_004163037.1| PREDICTED: prohibitin-2-like isoform 3 [Cucumis sativus]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/287 (84%), Positives = 271/287 (94%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MN NNVKVPK+PGGGA SAL+K+G+IGGLGLYAA++SLYNVEGGHRAI+FNR+VG+KDKV
Sbjct: 1   MNLNNVKVPKLPGGGAASALLKIGIIGGLGLYAASNSLYNVEGGHRAIVFNRLVGIKDKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTHL+IPWFERP+IYDVRARPNLVES++GS DLQMVKIGLRVLTRP+ ++LPT+YRT
Sbjct: 61  YPEGTHLIIPWFERPIIYDVRARPNLVESSSGSRDLQMVKIGLRVLTRPLPNELPTLYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLK+VVAQYNASQL+TQRE VSREIRK LTERAA FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKSVVAQYNASQLLTQREAVSREIRKTLTERAAQFNIALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ AIIRAQGEA S QLIGQA+A
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSGQLIGQAVA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNS 287
            NPAF+TLRKIEAAREIA TI+ S+NKV+LN+DDLLLNLQEM L+ S
Sbjct: 241 NNPAFMTLRKIEAAREIAHTIANSANKVFLNSDDLLLNLQEMSLEPS 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507410|gb|AFK41771.1| unknown [Medicago truncatula]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/286 (83%), Positives = 259/286 (90%)

Query: 3   FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYP 62
            NN+K  K+P GGA S L K+G+IGG+GLYAA +SLYNVEGGHRAI+FNR+VGVKDKVYP
Sbjct: 1   MNNMKNMKVPSGGAASTLAKLGIIGGIGLYAAANSLYNVEGGHRAIVFNRLVGVKDKVYP 60

Query: 63  EGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLG 122
           EGTH +IPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRP+  QLPT+YRTLG
Sbjct: 61  EGTHFVIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPGQLPTVYRTLG 120

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSIT 182
           ENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAA FNIALDDVSIT
Sbjct: 121 ENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVSIT 180

Query: 183 SLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKN 242
           S TFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ A+IRAQGEA SAQLIGQAIA N
Sbjct: 181 SPTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANN 240

Query: 243 PAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ 288
           PAFITLRKIEAAREIA  I+ S+NKVYL A DLLLNLQ + LD S+
Sbjct: 241 PAFITLRKIEAAREIAHVIANSANKVYLEAGDLLLNLQGINLDPSK 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806334|ref|NP_001241227.1| uncharacterized protein LOC100811958 [Glycine max] gi|255637310|gb|ACU18985.1| unknown [Glycine max]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/269 (86%), Positives = 253/269 (94%), Gaps = 1/269 (0%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNFNNV  PK+PGGG V+AL+KVG+IGGL +Y A +SLYNVEGGHRAI+FNR+VGVKDKV
Sbjct: 1   MNFNNVNAPKVPGGG-VAALLKVGIIGGLVVYGAANSLYNVEGGHRAIVFNRVVGVKDKV 59

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH+MIPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV DQLPT+YRT
Sbjct: 60  YPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 119

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILT+RA+ FNIALDDVS
Sbjct: 120 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTQRASQFNIALDDVS 179

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ A+IRAQGEA SAQLIG+AIA
Sbjct: 180 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGEAIA 239

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVY 269
            NPAFITLRKIEAAREIA TIS S+NKVY
Sbjct: 240 NNPAFITLRKIEAAREIAHTISNSANKVY 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543247|ref|XP_003540074.1| PREDICTED: prohibitin-2-like [Glycine max]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/269 (87%), Positives = 253/269 (94%), Gaps = 1/269 (0%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNFNNV VPK+PGGG V+AL+KV +IGGL +Y A +SLYNVEGGHRAI+FNR+VGVKDKV
Sbjct: 1   MNFNNVNVPKVPGGG-VAALLKVSIIGGLVVYGAANSLYNVEGGHRAIVFNRVVGVKDKV 59

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTH+MIP FERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV DQLPT+YRT
Sbjct: 60  YPEGTHIMIPLFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRT 119

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILT+RA+ FNIALDDVS
Sbjct: 120 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTQRASQFNIALDDVS 179

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDK+ A+IRAQGEA SAQLIGQAIA
Sbjct: 180 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKQSAVIRAQGEAKSAQLIGQAIA 239

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVY 269
            NPAFITLRKIEAAREIAQTIS S+NKVY
Sbjct: 240 NNPAFITLRKIEAAREIAQTISNSANKVY 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771517|emb|CAN66748.1| hypothetical protein VITISV_005691 [Vitis vinifera]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/287 (88%), Positives = 272/287 (94%)

Query: 1   MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
           MNFNNVKVPK+PGGGA SALIK+GV+GGLGLY A +SLYNVEGGHRAI+FNRI+GVKDKV
Sbjct: 1   MNFNNVKVPKVPGGGAASALIKLGVVGGLGLYGAINSLYNVEGGHRAIVFNRIIGVKDKV 60

Query: 61  YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
           YPEGTHLMIPWFERPVIYDVRARP+LVEST+GS DLQMVKIGLRVLTRPV DQLP IYRT
Sbjct: 61  YPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPAIYRT 120

Query: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
           LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAA FNIALDDVS
Sbjct: 121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDVS 180

Query: 181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
           ITSLTFGKEFT AIEAKQVAAQEAERAKF+VEKAEQDKK AIIRAQGEA SAQLIGQAIA
Sbjct: 181 ITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAKSAQLIGQAIA 240

Query: 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNS 287
            NPAFITLRKIEA+REIA TIS S+N+V+LN++DLLLNLQEM L+++
Sbjct: 241 NNPAFITLRKIEASREIAHTISNSANRVFLNSNDLLLNLQEMNLESA 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2121392	288	PHB1 "prohibitin 1" [Arabidops	0.979	0.979	0.843	2e-120
TAIR|locus:2054779	286	PHB6 "AT2G20530" [Arabidopsis	0.975	0.982	0.807	1.3e-116
TAIR|locus:2024142	286	PHB2 "prohibitin 2" [Arabidops	0.982	0.989	0.796	1.9e-115
TAIR|locus:2167588	278	PHB7 "AT5G44140" [Arabidopsis	0.958	0.992	0.750	1.4e-101
DICTYBASE|DDB_G0284117	293	phbB "prohibitin" [Dictyosteli	0.979	0.962	0.586	2e-81
ZFIN|ZDB-GENE-030131-3141	302	phb2 "prohibitin 2" [Danio rer	0.885	0.844	0.593	6.2e-78
FB|FBgn0010551	338	l(2)03709 "lethal (2) 03709" [	0.885	0.754	0.572	1.1e-76
POMBASE|SPCC1322.16	288	phb2 "prohibitin Phb2 (predict	0.857	0.857	0.611	3.1e-76
UNIPROTKB|J3KPX7	299	PHB2 "Prohibitin-2" [Homo sapi	0.868	0.836	0.585	3.9e-76
UNIPROTKB|Q99623	299	PHB2 "Prohibitin-2" [Homo sapi	0.868	0.836	0.585	3.9e-76

TAIR|locus:2121392 PHB1 "prohibitin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 238/282 (84%), Positives = 255/282 (90%)

Query:     4 NNVKVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPE 63
             NNVKVPK+PGGGA+S             Y ATHSLYNVEGGHRAIMFNR+VG+KDKVYPE
Sbjct:     2 NNVKVPKIPGGGAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPE 61

Query:    64 GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
             GTHLMIPWFERPVIYDVRARP LVEST+GS DLQMVKIGLRVLTRP+ADQLP IYR+LGE
Sbjct:    62 GTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGE 121

Query:   124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
             NY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAA FN+ALDDVSIT+
Sbjct:   122 NYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDVSITN 181

Query:   184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
             LTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQDK+ A+IRAQGEA SAQLIGQAIA N 
Sbjct:   182 LTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNQ 241

Query:   244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
             AFITLRKIEAAREIAQTI+ S+NKVYL++DDLLLNLQ M LD
Sbjct:   242 AFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2054779 PHB6 "AT2G20530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
 Identities = 230/285 (80%), Positives = 254/285 (89%)

Query:     1 MNFNNVKVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
             MNF NVKVPK PGGG ++A            Y ATH+LYNV+GGHRAI+FNR+VG+KDKV
Sbjct:     1 MNFKNVKVPKGPGGGVIAAVVIGGLSL----YGATHTLYNVDGGHRAIVFNRLVGIKDKV 56

Query:    61 YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
             YPEGTHLMIPWFERP+IYDVRA+P LVEST+GS DLQMVKIGLRVLTRP+ADQLP +YR+
Sbjct:    57 YPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYRS 116

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
             LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAA F+IALDDVS
Sbjct:   117 LGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDVS 176

Query:   181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
             IT LTFGKEFT AIE KQVAAQEAERAKFIVEKAEQDK+ A+IRA+GEA SAQLIGQAIA
Sbjct:   177 ITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAIA 236

Query:   241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
              N AF+TLRKIEAAREIAQTIS+S+NKVYL+++DLLLNLQ M LD
Sbjct:   237 NNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2024142 PHB2 "prohibitin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 227/285 (79%), Positives = 254/285 (89%)

Query:     1 MNFNNVKVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
             M+FN  KVP +PG  A+SA            YA T+SLYNV+GGHRA+MFNR+ G+K+KV
Sbjct:     1 MSFN--KVPNIPGAPALSALLKVSVIGGLGVYALTNSLYNVDGGHRAVMFNRLTGIKEKV 58

Query:    61 YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
             YPEGTH M+PWFERP+IYDVRARP LVESTTGSHDLQMVKIGLRVLTRP+ D+LP IYRT
Sbjct:    59 YPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYRT 118

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
             LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+ F+IALDDVS
Sbjct:   119 LGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDVS 178

Query:   181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
             IT+LTFGKEFT AIEAKQVAAQEAERAKFIVEKAEQD++ A+IRAQGEA SAQLIGQAIA
Sbjct:   179 ITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIA 238

Query:   241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLD 285
              N AFITLRKIEAAREIAQTI++S+NKVYL+++DLLLNLQEM L+
Sbjct:   239 NNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLE 283

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2167588 PHB7 "AT5G44140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 208/277 (75%), Positives = 230/277 (83%)

Query:     5 NVK-VPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPE 63
             NVK VP +PG  A+SA            Y    S+YNV+GGHRAI+FNR  G+KD+VYPE
Sbjct:     2 NVKKVPNVPGSPALSALLKLGVIGGLGLYCIGSSMYNVDGGHRAIVFNRFTGIKDRVYPE 61

Query:    64 GTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE 123
             GTH  IP FER +IYDVR+RP +  S TGS+DLQ V IGLRVLTRP+ D+LP IYRTLG+
Sbjct:    62 GTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYRTLGQ 121

Query:   124 NYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITS 183
             NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDVSIT+
Sbjct:   122 NYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDVSITN 181

Query:   184 LTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNP 243
             L FGKEFT AIE KQVAAQEAERAKFIVEKAEQDKK AIIRAQGEA SAQLIGQAIA N 
Sbjct:   182 LKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAIANNE 241

Query:   244 AFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQ 280
             AFITLRKIEAAREIAQTI+KS+NKVYLN+ DLL++ Q
Sbjct:   242 AFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

DICTYBASE|DDB_G0284117 phbB "prohibitin" [Dictyostelium discoideum (taxid:44689)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 169/288 (58%), Positives = 212/288 (73%)

Query:     1 MNFNNVKVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKV 60
             +NFNN+  PK+P G                   A  SL NVEGGHRAI+FNR VG+K+KV
Sbjct:     8 VNFNNI--PKLPKGSF--GGGFGLLALGGVGLLALSSLVNVEGGHRAIVFNRFVGIKNKV 63

Query:    61 YPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRT 120
             Y EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRT
Sbjct:    64 YNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRT 123

Query:   121 LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVS 180
             LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA  FNI LDDVS
Sbjct:   124 LGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVS 183

Query:   181 ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240
             IT L FG+E+  AIEAKQVA QEAERA+F+VEKA QDK+  I++A+GEA SAQLI  AI 
Sbjct:   184 ITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAIK 243

Query:   241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNSQ 288
             ++P  + LR +EA++EIA  +SKS NK+Y++ + LLLN     L+N+Q
Sbjct:   244 QSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN--GFDLNNNQ 289

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-3141 phb2 "prohibitin 2" [Danio rerio (taxid:7955)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 152/256 (59%), Positives = 202/256 (78%)

Query:    32 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVEST 90
             Y    + Y VEGG RA++F+RI G++ D V  EG H  +PWF+ P+IYD+RARP  + S 
Sbjct:    42 YGVKEATYTVEGGQRAVIFSRIGGMQMDTVLAEGLHFRMPWFQYPIIYDIRARPRKISSL 101

Query:    91 TGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQL 150
             TGS DLQMV IGLRVL+RPVA QLP +Y+ LG++Y+ERVLPSI++E LK+VVA++NASQL
Sbjct:   102 TGSKDLQMVNIGLRVLSRPVASQLPIMYQQLGKDYDERVLPSIVNEVLKSVVAKFNASQL 161

Query:   151 ITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 210
             ITQR  VS  IR+ L ERA  FNI LDDV+IT L+F KE+T A+EAKQVA QEA+RA+F 
Sbjct:   162 ITQRAQVSLLIRRDLIERAKDFNIILDDVAITELSFSKEYTAAVEAKQVAQQEAQRAQFF 221

Query:   211 VEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYL 270
             VEKA+QD++  II+A+GEA +A+++GQA+ KNP ++ LR+I AA+ IA+T++ S NKVYL
Sbjct:   222 VEKAKQDQRQKIIQAEGEAEAAKMLGQAVTKNPGYLKLRRIRAAQNIAKTVAASQNKVYL 281

Query:   271 NADDLLLNLQEMKLDN 286
             +AD L+LNLQ+   +N
Sbjct:   282 SADSLVLNLQDSSFNN 297

GO:0016020 "membrane" evidence=IEA

FB|FBgn0010551 l(2)03709 "lethal (2) 03709" [Drosophila melanogaster (taxid:7227)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 146/255 (57%), Positives = 202/255 (79%)

Query:    32 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTT 91
             Y  + SLY VEGGHRAI+F+R+ G++  +Y EG H+ IPWF+ P+IYD+R+RP  + S T
Sbjct:    36 YGVSQSLYTVEGGHRAIIFSRLGGIQSDIYSEGLHVRIPWFQYPIIYDIRSRPRKISSPT 95

Query:    92 GSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLI 151
             GS DLQM+ I LRVL+RP +  LP +++ LG +Y+E+VLPSI +E LK+V+A++NASQLI
Sbjct:    96 GSKDLQMINISLRVLSRPDSLNLPYLHKQLGVDYDEKVLPSICNEVLKSVIAKFNASQLI 155

Query:   152 TQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIV 211
             TQR+ VS  IRK L ERA  FNI LDDVS+T L+FGKE+T AIEAKQVA QEA+RA F V
Sbjct:   156 TQRQQVSLLIRKELVERARDFNIILDDVSLTELSFGKEYTAAIEAKQVAQQEAQRAVFFV 215

Query:   212 EKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLN 271
             E+A+Q+K+  I++A+GEA +A+++G A+ +NPA++ LRK+ AA+ IA+TI+ S NKVYL+
Sbjct:   216 ERAKQEKQQKIVQAEGEAEAAKMLGLAVKQNPAYLKLRKLRAAQSIARTIASSQNKVYLS 275

Query:   272 ADDLLLNLQEMKLDN 286
             AD L+LN+Q+   D+
Sbjct:   276 ADSLMLNIQDSGFDD 290

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

POMBASE|SPCC1322.16 phb2 "prohibitin Phb2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 151/247 (61%), Positives = 191/247 (77%)

Query:    32 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTT 91
             +A   SL+NV+GGHRAI ++RI G+K+ +YPEGTH +IPW E  + YDVRA+P  + S T
Sbjct:    39 FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLT 98

Query:    92 GSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLI 151
             G+ DLQMV I  RVL+RP    LP IYRTLG +Y+ERVLPSI++E LK+VVAQ+NASQLI
Sbjct:    99 GTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLI 158

Query:   152 TQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIV 211
             TQRE VSR +R+ L +RAA FNI LDDVS+T + F  EFT A+EAKQ+A Q+A+RA F V
Sbjct:   159 TQRERVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYV 218

Query:   212 EKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLN 271
             ++A  +K+G I+RAQGE  +AQLIG+AI   P FI LRK+E AREIA  +SKS+NKV LN
Sbjct:   219 DRARMEKQGFIVRAQGEGRAAQLIGEAIKNKPGFIELRKLETAREIANILSKSNNKVMLN 278

Query:   272 ADDLLLN 278
             A  LLL+
Sbjct:   279 ASTLLLD 285

GO:0003674 "molecular_function" evidence=ND

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J3KPX7 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 147/251 (58%), Positives = 201/251 (80%)

Query:    32 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVEST 90
             Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S 
Sbjct:    34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSP 93

Query:    91 TGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQL 150
             TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQL
Sbjct:    94 TGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQL 153

Query:   151 ITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 210
             ITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   154 ITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213

Query:   211 VEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYL 270
             VEKA+Q+++  I++A+GEA +A+++G+A++KNP +I LRKI AA+ I++TI+ S N++YL
Sbjct:   214 VEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIYL 273

Query:   271 NADDLLLNLQE 281
              AD+L+LNLQ+
Sbjct:   274 TADNLVLNLQD 284

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q99623 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 147/251 (58%), Positives = 201/251 (80%)

Query:    32 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVEST 90
             Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S 
Sbjct:    34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSP 93

Query:    91 TGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQL 150
             TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQL
Sbjct:    94 TGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQL 153

Query:   151 ITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 210
             ITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   154 ITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213

Query:   211 VEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYL 270
             VEKA+Q+++  I++A+GEA +A+++G+A++KNP +I LRKI AA+ I++TI+ S N++YL
Sbjct:   214 VEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIYL 273

Query:   271 NADDLLLNLQE 281
              AD+L+LNLQ+
Sbjct:   274 TADNLVLNLQD 284

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0060744 "mammary gland branching involved in thelarche" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0060762 "regulation of branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9UMS3	PHB2_XENTR	No assigned EC number	0.5652	0.9479	0.9069	yes	no
Q99623	PHB2_HUMAN	No assigned EC number	0.5503	0.9409	0.9063	yes	no
Q5XIH7	PHB2_RAT	No assigned EC number	0.5503	0.9409	0.9063	yes	no
Q9SIL6	PHB6_ARATH	No assigned EC number	0.8280	0.9756	0.9825	no	no
O35129	PHB2_MOUSE	No assigned EC number	0.5503	0.9409	0.9063	yes	no
P50085	PHB2_YEAST	No assigned EC number	0.5967	0.8437	0.7838	yes	no
O49460	PHB1_ARATH	No assigned EC number	0.8763	0.9826	0.9826	no	no
Q9ZNT7	PHB2_ARATH	No assigned EC number	0.8280	0.9826	0.9895	yes	no
Q9FFH5	PHB7_ARATH	No assigned EC number	0.7805	0.9652	1.0	no	no
Q2HJ97	PHB2_BOVIN	No assigned EC number	0.5503	0.9409	0.9063	yes	no
Q5RB19	PHB2_PONAB	No assigned EC number	0.5576	0.9166	0.8829	yes	no
O94550	PHB2_SCHPO	No assigned EC number	0.6113	0.8576	0.8576	yes	no
Q5ZMN3	PHB2_CHICK	No assigned EC number	0.5936	0.8680	0.8305	yes	no
P50093	PHB2_CAEEL	No assigned EC number	0.5942	0.8472	0.8299	yes	no
Q54Q31	PHB2_DICDI	No assigned EC number	0.5902	0.9791	0.9624	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VII0042 SubName- Full=Putative uncharacterized protein; (291 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
cd03401	196	cd03401, Band_7_prohibitin, Band_7_prohibitin	1e-117
smart00244	160	smart00244, PHB, prohibitin homologues	4e-34
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	3e-24
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	3e-21
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-17
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	5e-12
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	1e-07
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	3e-07
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	2e-04
TIGR01932	317	TIGR01932, hflC, HflC protein	0.003

>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin

 Score =  335 bits (861), Expect = e-117
 Identities = 140/196 (71%), Positives = 162/196 (82%)

Query: 37  SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDL 96
           SLYNV+GGHRA++FNR  GVKD VY EG H  IPWF++P+I+DVRARP  +ESTTGS DL
Sbjct: 1   SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60

Query: 97  QMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156
           QMV I LRVL RP A QLP IY+ LGE+Y+ERVLPSII+E LKAVVAQ+ A +LITQRE 
Sbjct: 61  QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 157 VSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQ 216
           VS  IR+ LTERA  F I LDDVSIT LTF KEFT A+EAKQVA QEAERAKF+VEKAEQ
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 217 DKKGAIIRAQGEATSA 232
           +K+ A+IRA+GEA +A
Sbjct: 181 EKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  121 bits (305), Expect = 4e-34
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 37  SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLV-ESTTGSHD 95
           +   V G     +  R+  V   + P G H +IP+ +     D+RA+ + V    T + D
Sbjct: 1   AAIKVVGEGERGVVERLGRVLRVLGP-GLHFLIPFIDDVKKVDLRAQTDDVPPQETITKD 59

Query: 96  LQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QR 154
              V +   V  R V D L  +YR    + +  V+  +   TL++V+ +    +L+T QR
Sbjct: 60  NVKVSVDAVVYYR-VLDPLRAVYRV--LDADYAVIEQLAQTTLRSVIGKRTLDELLTDQR 116

Query: 155 ETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ 198
           E +S  IR+ L E A  + I ++DV I  +   +E   A+EA+Q
Sbjct: 117 EKISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 98.7 bits (246), Expect = 3e-24
 Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 18/275 (6%)

Query: 20  LIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYD 79
           LI + ++  + L  ++  +         + F R      +    G H  IP+ E      
Sbjct: 5   LIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGE---PGLHFKIPFPEAIEEVV 61

Query: 80  VRARPNLVESTTG------SHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSI 133
           VR          G      + D  +V +   V  R V D    +Y        E  L  +
Sbjct: 62  VRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYR-VTDPQKAVYNVENA---EAALRQL 117

Query: 134 IHETLKAVVAQYNASQLITQRET-VSREIRKILTERAAYFNIALDDVSITSLTFGKEFTF 192
           +   L++V+ +    +L+T+R   ++ +IR+IL E A  + I + DV I  +   +E   
Sbjct: 118 VQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQA 177

Query: 193 AIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITLRKIE 252
           A+E KQ+AA+  +RA+  + +AE + + AI+RA+GEA +A ++ +A A+    I   + +
Sbjct: 178 AME-KQMAAERDKRAE--ILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEAD 233

Query: 253 AAREIAQTISKSSNKVYLNADDLLLNLQEMKLDNS 287
           AA+ IA  + ++       A   L  L E+ L  +
Sbjct: 234 AAKIIAAALREAPAAPQALAQRYLEELLEIALAGN 268

Length = 291

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 39  YNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE--STTGSHDL 96
             V  G   ++     G   +V   G H  +P+ +   + D R +   V    T  + D 
Sbjct: 1   TIVPPGEVGVVTRF--GKVSRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDG 58

Query: 97  QMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRET 156
             V + + V  R V D    +    GE   + +L  ++   L+ V+A+Y   +L++ RE 
Sbjct: 59  VPVNVDVTVQYR-VEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREE 117

Query: 157 VSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAE 215
           +++E+++ L E    + + ++DV IT +    E   AIE KQ A QEAE A+    +AE
Sbjct: 118 IAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERAEAE 176

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 76  VIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIH 135
            I   R   ++      + D   V++   V  R V D +  +Y        E  L  +  
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYR-VVDPVKALYNVRDPED-EEALRQLAQ 58

Query: 136 ETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIE 195
             L++V+ +    +L+  R+ ++ E+R+ L E    + I + DV I  +   +E   A+E
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 196 AKQ 198
            +Q
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 59/260 (22%)

Query: 38  LYNVEGGHRAIM--FNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHD 95
           L+ V+ G +A++  F  +V V   V   G H  +P+ ++   +D R         T   D
Sbjct: 1   LFIVDEGEQAVVLRFGEVVRV---VTEPGLHFKLPFIQQVKKFDKRI-------LTLDSD 50

Query: 96  LQMVKIGLRVLTRPVADQLPTI---------------YRTLG--ENYNERVLPSIIHETL 138
            Q      RVLT+   D+   I               Y+ +G  E   E  L  I++  L
Sbjct: 51  PQ------RVLTK---DKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSAL 101

Query: 139 KAVVAQYNASQLI-TQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAI--- 194
           +A   +    +L+  +R  +  EIR+ + E A    I + DV I  +   +E + ++   
Sbjct: 102 RAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRR 161

Query: 195 -------EAKQVAAQEAERAKFIVEKAEQD---------KKGAIIRAQGEATSAQLIGQA 238
                   A +  A+  E A+ I   A+++         ++   IR +G+A +A++  +A
Sbjct: 162 MRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEA 221

Query: 239 IAKNPAFITL-RKIEAAREI 257
             K+P F    R +EA R  
Sbjct: 222 YGKDPEFYAFYRSLEAYRNS 241

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 39/131 (29%), Positives = 70/131 (53%), Gaps = 17/131 (12%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEA 196
           TL++V+ +    +L+++RE ++ E+ +IL E    + + ++ V I  +   +E   A+  
Sbjct: 93  TLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMA- 151

Query: 197 KQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA---IAKNPAFITLRKIEA 253
           KQ    EAER          +K+  II A+GE  +A L+ +A    A NPA + LR++E 
Sbjct: 152 KQA---EAER----------EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELET 198

Query: 254 AREIAQTISKS 264
             EIA+  + +
Sbjct: 199 LEEIAKEAAST 209

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 99  VKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETV 157
           +   + V  R   ++   ++  LG +Y  +++       ++ V  +Y A Q+  T+R+ +
Sbjct: 24  INADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEI 83

Query: 158 SREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ 198
              I+K L E      + L++V + ++    +   AIEAK 
Sbjct: 84  ESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAKL 124

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEA 196
            L+A + +    +L  Q++ +++ + + L E  + +   +    IT +    E   A+  
Sbjct: 92  VLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE 151

Query: 197 KQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAK 241
              A ++   A   V KAE +K   I  A+ +A + +L G   A+
Sbjct: 152 INAAQRQRVAA---VHKAEAEKIKDIKAAEADAEAKRLQGVGAAE 193

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|233644 TIGR01932, hflC, HflC protein

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 59/297 (19%), Positives = 112/297 (37%), Gaps = 72/297 (24%)

Query: 20  LIKVGVIGGLGLYAATHSLYNVEGGHRAIM--FNRIV---GVKDKVYPEGTHLMIPWFER 74
            I V V+  + L+      + ++ G R I+  F +I+        VY  G H  IP+ E 
Sbjct: 5   GIVVIVLLIVVLF---QPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEH 61

Query: 75  PVIYDVR-----ARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGEN---YN 126
             I+D +      RP+ + +     + + + I   +  R + D     Y + G       
Sbjct: 62  VKIFDAKIQTMDGRPDRIPTK----EKKDIIIDTYIRWR-IED-FKKYYLSTGGGTISAA 115

Query: 127 ERVLPSIIHETLKAVVAQYNASQLITQ------------------------------RET 156
           E ++   I + L++ +      +++                                RE 
Sbjct: 116 EVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREI 175

Query: 157 VSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAI------EAKQVA--------AQ 202
           ++REI +I   +     I + DV I  + +  E + +I      E +Q+A         +
Sbjct: 176 LAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEK 235

Query: 203 EAE-RAKFIVEK----AEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFIT-LRKIEA 253
             E   K   E     +E  +   II+ +G+A +A++   A  K+P F +  R +EA
Sbjct: 236 AEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEA 292

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
KOG3083	271	consensus Prohibitin [Posttranslational modificati	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.98
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.96
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	99.95
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.93
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.86
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.86
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.81
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.72
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.69
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.58
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.58
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.93
PTZ00491	850	major vault protein; Provisional	98.31
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	98.04
PRK13665	316	hypothetical protein; Provisional	97.77
COG1580	159	FliL Flagellar basal body-associated protein [Cell	97.09
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	95.16
PRK12785	166	fliL flagellar basal body-associated protein FliL;	94.79
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	93.47
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	93.16
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	91.59
PRK06654	181	fliL flagellar basal body-associated protein FliL;	91.49
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	91.29
PRK11029	334	FtsH protease regulator HflC; Provisional	91.18
PRK05696	170	fliL flagellar basal body-associated protein FliL;	90.77
PF03748	99	FliL: Flagellar basal body-associated protein FliL	90.55
PRK08455	182	fliL flagellar basal body-associated protein FliL;	89.03
PRK07021	162	fliL flagellar basal body-associated protein FliL;	87.33
PRK07718	142	fliL flagellar basal body-associated protein FliL;	86.91
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	86.84
PRK05697	137	flagellar basal body-associated protein FliL-like	82.26

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-52  Score=338.00  Aligned_cols=286  Identities=77%  Similarity=1.112  Sum_probs=278.2

Q ss_pred             CCCCCccCCCCCCCCchhHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEee
Q 023059            1 MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDV   80 (288)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~   80 (288)
                      |++++-+.++.|+..++++.+.+++++++.+..+..|++.|+.||++++|+|+||+.++++..|.||.+||+++.+.||+
T Consensus         1 ~~~~~~~~~~~pg~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDv   80 (290)
T KOG3090|consen    1 MLMKLGKVPNIPGPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDV   80 (290)
T ss_pred             CchhccCCCCCCCcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeee
Confidence            78888888888888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHH
Q 023059           81 RARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE  160 (288)
Q Consensus        81 ~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~  160 (288)
                      |.+++.+.+...|+|-+.|++...|.-|.+.+..+.+|+++|.||.+++|-+++.+.++.++++|+.++++++|+..+..
T Consensus        81 RarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrl  160 (290)
T KOG3090|consen   81 RARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRL  160 (290)
T ss_pred             ccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059          161 IRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA  240 (288)
Q Consensus       161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~  240 (288)
                      +++.|.++..++.|-++||.|+++.|.+++..++|+||+|+||++||++-++.|+++++.++++|+|||++++++++|++
T Consensus       161 iRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~  240 (290)
T KOG3090|consen  161 IRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK  240 (290)
T ss_pred             HHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCCcccccccccccCC
Q 023059          241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDN  286 (288)
Q Consensus       241 ~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~~~~~~~~~~~~~~  286 (288)
                      ++|.++.+|.+|+-++||+.+++++|.+|+++++.+||+..+.|++
T Consensus       241 nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~~  286 (290)
T KOG3090|consen  241 NNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLDD  286 (290)
T ss_pred             CCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhcccc
Confidence            9999999999999999999999999999999999999999999986

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=7.9e-46  Score=331.51  Aligned_cols=251  Identities=22%  Similarity=0.348  Sum_probs=216.2

Q ss_pred             HHHHHHHHHhhccEEEecCCeEEEEEeeeccccce------eeCCcceeecccccceEEEeeeeeeeeeee-ccccCCcc
Q 023059           25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDK------VYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQ   97 (288)
Q Consensus        25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~   97 (288)
                      ++++++++++++|+++|++||+||++ +||++.+.      +++||+||++||+++++++|+|.+.++.+. ++.|+|+.
T Consensus         7 ~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~   85 (334)
T PRK11029          7 AIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKK   85 (334)
T ss_pred             HHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCC
Confidence            33444556778899999999999999 99997653      589999999999999999999999999874 69999999


Q ss_pred             EEEEEEEEEEecCCCCHHHHHHHhC-ccc--cccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHH-----
Q 023059           98 MVKIGLRVLTRPVADQLPTIYRTLG-ENY--NERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER-----  168 (288)
Q Consensus        98 ~v~v~~~v~y~v~~~~~~~~~~~~g-~~~--~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~-----  168 (288)
                      ++.+|+++.|+  +.++..+|.+++ .++  ....|.+.+++++|+++|+++++|+++ +|++|..++++.+++.     
T Consensus        86 ~V~VD~~V~yr--I~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~  163 (334)
T PRK11029         86 DLIVDSYIKWR--ISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTE  163 (334)
T ss_pred             EEEEEEEEEEE--ECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            99999999999  578888877664 222  346688999999999999999999997 7999999999999854     


Q ss_pred             ----------------------------------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH----H---
Q 023059          169 ----------------------------------AAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAER----A---  207 (288)
Q Consensus       169 ----------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~----a---  207 (288)
                                                        +.+|||+|.+|.|++++||+++.+++++++.|+++++.    +   
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege  243 (334)
T PRK11029        164 DEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQ  243 (334)
T ss_pred             ccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                              47899999999999999999999999999988876541    1   


Q ss_pred             ------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCCc
Q 023059          208 ------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEAAREIAQTISKSSNKVYLNADD  274 (288)
Q Consensus       208 ------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~~  274 (288)
                                  +.....|++++++++++|+|||+|.++++++|.++|+++++ ++||+++++.   +++++++++|+++
T Consensus       244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~---~~~~~~~vl~~~~  320 (334)
T PRK11029        244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSF---SGNQDVMVLSPDS  320 (334)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCcEEEECCCh
Confidence                        12344588899999999999999999999999999999996 9999999854   3556789999999


Q ss_pred             ccccccc
Q 023059          275 LLLNLQE  281 (288)
Q Consensus       275 ~~~~~~~  281 (288)
                      ++|++..
T Consensus       321 ~~~~~l~  327 (334)
T PRK11029        321 DFFRYMK  327 (334)
T ss_pred             HHHHHhh
Confidence            9988775

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=2.6e-45  Score=329.10  Aligned_cols=250  Identities=19%  Similarity=0.324  Sum_probs=212.9

Q ss_pred             HHHHHHHHHhhccEEEecCCeEEEEEeeeccccce------eeCCcceeecccccceEEEeeeeeeeeeee-ccccCCcc
Q 023059           25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDK------VYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQ   97 (288)
Q Consensus        25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~   97 (288)
                      ++++++++++++|+++|++||+||++ +||++.+.      +++||+||++||+++++.+|++.+.++.+. ++.|+|+.
T Consensus         7 ~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~   85 (317)
T TIGR01932         7 VVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKK   85 (317)
T ss_pred             HHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCC
Confidence            33444566777899999999999998 89997543      358999999999999999999999998764 79999999


Q ss_pred             EEEEEEEEEEecCCCCHHHHHHHhC---ccccccccchHHHHHHHHHHhhCCHhHHhhh-HHHH----------------
Q 023059           98 MVKIGLRVLTRPVADQLPTIYRTLG---ENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETV----------------  157 (288)
Q Consensus        98 ~v~v~~~v~y~v~~~~~~~~~~~~g---~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i----------------  157 (288)
                      ++.+++++.||  ++++..+|.++|   .+..+..|.+.+++++|+++|+|+++|++++ |++|                
T Consensus        86 ~V~Vd~~V~yr--V~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~  163 (317)
T TIGR01932        86 DIIIDTYIRWR--IEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKIN  163 (317)
T ss_pred             EEEEEEEEEEE--ECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccccc
Confidence            99999999999  568899998877   2345677999999999999999999999964 5555                


Q ss_pred             -------------HHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH------------------
Q 023059          158 -------------SREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAER------------------  206 (288)
Q Consensus       158 -------------~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~------------------  206 (288)
                                   .+.+.+.+...+.+|||+|++|.|++++||+++.+++++++.|+++++.                  
T Consensus       164 ~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A  243 (317)
T TIGR01932       164 KIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKA  243 (317)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         5677888888999999999999999999999999999888887764311                  


Q ss_pred             -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCCccccccc
Q 023059          207 -AKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEAAREIAQTISKSSNKVYLNADDLLLNLQ  280 (288)
Q Consensus       207 -a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~~~~~~~~  280 (288)
                       ++.....|+|++++++++|+|||+++++++++|+++|+++++ ++||+++++.   +++++++++++||+||++.
T Consensus       244 ~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~~~~~~  316 (317)
T TIGR01932       244 EYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSEFFQYM  316 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---CCCCCEEEECCCcHHHHhh
Confidence             123345677888899999999999999999999999999995 9999999964   3667789999999999865

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=7.9e-42  Score=287.82  Aligned_cols=195  Identities=69%  Similarity=1.002  Sum_probs=184.9

Q ss_pred             cEEEecCCeEEEEEeeeccccc-eeeCCcceeecccccceEEEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHH
Q 023059           37 SLYNVEGGHRAIMFNRIVGVKD-KVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLP  115 (288)
Q Consensus        37 ~~~~V~~g~~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~  115 (288)
                      |+++|++|++||++ +||+... .+++||+||++||+++++.+|++.+.+++...+.|+|++.+++++.+.|+++++++.
T Consensus         1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~   79 (196)
T cd03401           1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP   79 (196)
T ss_pred             CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence            68999999999999 7887543 489999999999999999999999999888889999999999999999999888999


Q ss_pred             HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 023059          116 TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIE  195 (288)
Q Consensus       116 ~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie  195 (288)
                      .+|.++|.++.+..|.+.+++.+|+++++|+++|++++|++|++.+++.+++.+++|||.|+++.|++|+||+++.++|+
T Consensus        80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~  159 (196)
T cd03401          80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE  159 (196)
T ss_pred             HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence            99999987777778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 023059          196 AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSA  232 (288)
Q Consensus       196 ~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~  232 (288)
                      +++.|+|++++++.++..|++|+++++++|+|||+|+
T Consensus       160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a~  196 (196)
T cd03401         160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEAA  196 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence            9999999999999999999999999999999999873

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.9e-41  Score=292.63  Aligned_cols=216  Identities=24%  Similarity=0.348  Sum_probs=192.9

Q ss_pred             EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeee-eccccCCccEEEEEEEEEEecCCCCHHH
Q 023059           38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTGSHDLQMVKIGLRVLTRPVADQLPT  116 (288)
Q Consensus        38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~TkD~~~v~v~~~v~y~v~~~~~~~  116 (288)
                      +++|++||+||++ +||++.+.+++||+||++||+++++.+|++.+.++.+ .++.|+|+.++++++++.|||  .++..
T Consensus         1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~   77 (242)
T cd03405           1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRI--TDPLR   77 (242)
T ss_pred             CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEE--cCHHH
Confidence            5899999999999 8999876689999999999999999999999988875 479999999999999999995  67889


Q ss_pred             HHHHhCc--cccccccchHHHHHHHHHHhhCCHhHHhhh-HHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q 023059          117 IYRTLGE--NYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFA  193 (288)
Q Consensus       117 ~~~~~g~--~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  193 (288)
                      +|.+++.  +..+..|.+.+++.+|+++++++++|++++ |++|++.+++.+++.+++|||+|++|.|++|+||+++.++
T Consensus        78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a  157 (242)
T cd03405          78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES  157 (242)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence            9988873  233467899999999999999999999987 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHH
Q 023059          194 IEAKQVAAQEAERA-------------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEA  253 (288)
Q Consensus       194 ie~~~~a~q~ae~a-------------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~  253 (288)
                      |++++.++++...+                   +..+..|++++++.+++|+|||+|+++++++++++|+++.+ ++||+
T Consensus       158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~  237 (242)
T cd03405         158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEA  237 (242)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            98877766543211                   24567899999999999999999999999999999999995 99999


Q ss_pred             HHH
Q 023059          254 ARE  256 (288)
Q Consensus       254 ~~~  256 (288)
                      ++.
T Consensus       238 ~~~  240 (242)
T cd03405         238 YRN  240 (242)
T ss_pred             HHh
Confidence            875

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-42  Score=278.65  Aligned_cols=258  Identities=56%  Similarity=0.870  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeeeccccCCccEEEE
Q 023059           22 KVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKI  101 (288)
Q Consensus        22 ~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~TkD~~~v~v  101 (288)
                      .+++.+.++.-++.+++|.|+.||++|+++||.|+.+.+.+.|.||.+||.++.+.||.+.++..++....|||-++|++
T Consensus        11 k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~Vni   90 (271)
T KOG3083|consen   11 KFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNI   90 (271)
T ss_pred             ccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccc
Confidence            34455556667788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEe
Q 023059          102 GLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSI  181 (288)
Q Consensus       102 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I  181 (288)
                      ...+.|+..++..+.+|.++|.||.+++|-.+-...++.++++|+..|++++|+-+++.+++.+.++...+|+.+++|.|
T Consensus        91 Tlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~Lddvsi  170 (271)
T KOG3083|consen   91 TLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSI  170 (271)
T ss_pred             eEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhh
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHHHH
Q 023059          182 TSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAK-NPAFITLRKIEAAREIAQT  260 (288)
Q Consensus       182 ~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~-~p~~~~~~~le~~~~i~~~  260 (288)
                      +++.|.+++.+++|+||+|+||+||+++.++.|++++++.+|.||||++|+++++.++.. ..-+++++.+|+-++++..
T Consensus       171 ThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~  250 (271)
T KOG3083|consen  171 THLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQ  250 (271)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999965 4568889999999999999


Q ss_pred             hcCCCCEEEEcCCc-ccccc
Q 023059          261 ISKSSNKVYLNADD-LLLNL  279 (288)
Q Consensus       261 l~~~~~~i~l~~~~-~~~~~  279 (288)
                      |+++.|+.|+|++. .++++
T Consensus       251 Ls~s~nv~YLp~g~s~l~~l  270 (271)
T KOG3083|consen  251 LSRSRNVTYLPAGQSMLLQL  270 (271)
T ss_pred             HhcCCCceeccCCcceeccC
Confidence            99999999999874 55554

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=4.3e-40  Score=289.02  Aligned_cols=234  Identities=18%  Similarity=0.221  Sum_probs=199.8

Q ss_pred             EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeee-eeeeeccccCCccEEEEEEEEEEecCCCCHHH
Q 023059           38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARP-NLVESTTGSHDLQMVKIGLRVLTRPVADQLPT  116 (288)
Q Consensus        38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~-~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~  116 (288)
                      +++|++||+||++ +||++. ++++||+||++||+++++.+|++.+. +.-+..+.|+|+..+.+++++.|||  .++..
T Consensus         1 ~~iV~~ge~~Vv~-~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI--~d~~~   76 (261)
T TIGR01933         1 IYTIGEAERGVVL-RFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRI--TDPYK   76 (261)
T ss_pred             CEEeCCCeEEEEE-EcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEE--CCHHH
Confidence            5799999999999 899865 68999999999999999999997644 2222358899999999999999995  56776


Q ss_pred             HHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHH
Q 023059          117 IYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDVSITSLTFGKEFTFA  193 (288)
Q Consensus       117 ~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a  193 (288)
                      ++.+.  +..+..|.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.|  ||+|++|.|++++||+++.++
T Consensus        77 ~~~~~--~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        77 YLFSV--ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             HHHhC--CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence            65533  44556799999999999999999999998 89999999999999999865  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHH
Q 023059          194 IEAKQVAAQEAERA-------------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEA  253 (288)
Q Consensus       194 ie~~~~a~q~ae~a-------------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~  253 (288)
                      +++++.|+|+++++                   +..+..|++++++++++|+|||++.+++++||.++|+++.+ +++|+
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~  234 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLET  234 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            99888887654331                   12356788888999999999999999999999999999986 89999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCccccccc
Q 023059          254 AREIAQTISKSSNKVYLNADDLLLNLQ  280 (288)
Q Consensus       254 ~~~i~~~l~~~~~~i~l~~~~~~~~~~  280 (288)
                      ++++.   ++.++++++++++++|++.
T Consensus       235 ~~~~~---~~~~~~~~~~~~~~~~~~~  258 (261)
T TIGR01933       235 MEKVL---SNTRKVLLDDKKGNNLLYL  258 (261)
T ss_pred             HHHHH---ccCCeEEEECCCCCeeeee
Confidence            99864   4666789999998876653

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=3.5e-39  Score=296.12  Aligned_cols=239  Identities=19%  Similarity=0.280  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeee-eeccccCCccEEEEE
Q 023059           24 GVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLV-ESTTGSHDLQMVKIG  102 (288)
Q Consensus        24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~TkD~~~v~v~  102 (288)
                      +++++++++|+++|+++|++||+|||+ +||++. .+++||+||++||+++++.+|++.+.... +..++|+|+..|.++
T Consensus        83 ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd  160 (419)
T PRK10930         83 IAAAAVVIIWAASGFYTIKEAERGVVT-RFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE  160 (419)
T ss_pred             HHHHHHHHHHHHheEEEECCCeEEEEE-ECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEE
Confidence            344455667888999999999999999 999975 68999999999999999999998765332 346899999999999


Q ss_pred             EEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEE
Q 023059          103 LRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDV  179 (288)
Q Consensus       103 ~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v  179 (288)
                      ++|+||  +.++..++.++  ...+..|++.+++++|+++++++++++++ .|++|..++++.+++.+++|  ||+|.+|
T Consensus       161 ~~VqYr--I~Dp~~~lf~v--~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V  236 (419)
T PRK10930        161 MNVQYR--VTDPEKYLFSV--TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDV  236 (419)
T ss_pred             EEEEEE--ECCHHHHHHhc--cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence            999999  57788776654  34456799999999999999999999997 59999999999999999986  9999999


Q ss_pred             EeecccCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHh
Q 023059          180 SITSLTFGKEFTFAIEAKQVAAQEAER-------------------AKFIVEKAEQDKKGAIIRAQGEATS-AQLIGQAI  239 (288)
Q Consensus       180 ~I~~i~~p~~~~~aie~~~~a~q~ae~-------------------a~~~~~~A~ae~~a~~~~A~~ea~a-~~~~~~al  239 (288)
                      +|++++||+++.+++++.+.|+++.++                   ++..+..|+|++++.+++|+|||++ .++++ +|
T Consensus       237 ~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~-~Y  315 (419)
T PRK10930        237 NFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLP-EY  315 (419)
T ss_pred             EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Confidence            999999999999999877766653221                   1234667899999999999999977 56665 89


Q ss_pred             hcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059          240 AKNPAFITL-RKIEAAREIAQTISKSSNKVYLNAD  273 (288)
Q Consensus       240 ~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~  273 (288)
                      .++|++.+. .|||+++++   |++ .++++++.+
T Consensus       316 ~kaP~vtr~RlYletme~v---l~~-~~kvivd~~  346 (419)
T PRK10930        316 KAAPEITRERLYIETMEKV---LGH-TRKVLVNDK  346 (419)
T ss_pred             hhCHHHHHHHHHHHHHHHH---Hcc-CCEEEEeCC
Confidence            999999996 699999985   434 455677664

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.4e-38  Score=276.06  Aligned_cols=225  Identities=19%  Similarity=0.251  Sum_probs=192.6

Q ss_pred             CCeEEEEEeeeccccceeeCCcceeecccccceE-EEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHh
Q 023059           43 GGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPV-IYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTL  121 (288)
Q Consensus        43 ~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~-~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~  121 (288)
                      +|++||++ +||++. ++++||+||++||++++. .+|++.+.++++.++.|+||.++.+|+++.|||.+.++..++.++
T Consensus         1 q~~~~Vv~-rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~   78 (262)
T cd03407           1 QSQVAIIE-RFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL   78 (262)
T ss_pred             CcEEEEEe-ecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence            58999999 999865 689999999999999984 899999999998889999999999999999998666655777766


Q ss_pred             CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q 023059          122 GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAA  201 (288)
Q Consensus       122 g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~  201 (288)
                      + +. ...|.+.+++++|+++|+++++|++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+
T Consensus        79 ~-~~-~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~  156 (262)
T cd03407          79 G-NP-EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ  156 (262)
T ss_pred             C-CH-HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence            5 22 346899999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH----H----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-------------CchhhH----HHHHHHHHH
Q 023059          202 QEAERA----K----FIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAK-------------NPAFIT----LRKIEAARE  256 (288)
Q Consensus       202 q~ae~a----~----~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~-------------~p~~~~----~~~le~~~~  256 (288)
                      ++.+++    +    ..+..|++++++.+++|+|+|++.++.++++..             .|+..+    .+++|++++
T Consensus       157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~  236 (262)
T cd03407         157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA  236 (262)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence            765533    1    457789999999999999999999988877421             233333    479999999


Q ss_pred             HHHHhcCCCCEEEEcCCc
Q 023059          257 IAQTISKSSNKVYLNADD  274 (288)
Q Consensus       257 i~~~l~~~~~~i~l~~~~  274 (288)
                      ++.   ++++++++|.+.
T Consensus       237 ~~~---~~~kviv~p~~~  251 (262)
T cd03407         237 YGR---SSSTVVFRPHGP  251 (262)
T ss_pred             HHh---CCCCEEEecCCC
Confidence            875   555888998763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.3e-38  Score=276.56  Aligned_cols=227  Identities=21%  Similarity=0.242  Sum_probs=185.4

Q ss_pred             HHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEE-eeeee----------eee--e-eec
Q 023059           25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIY-DVRAR----------PNL--V-EST   90 (288)
Q Consensus        25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~-~~~~~----------~~~--~-~~~   90 (288)
                      ++++++++++++|+++|++||+||++ +||++. .+++||+||++||++++..+ |++.+          ...  . +..
T Consensus         2 ~~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (266)
T cd03404           2 IAALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESL   79 (266)
T ss_pred             hHHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccc
Confidence            34555667778899999999999998 899976 78999999999999887544 34221          111  1 235


Q ss_pred             cccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhh-HHHHHHHHHHHHHHHH
Q 023059           91 TGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERA  169 (288)
Q Consensus        91 ~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l  169 (288)
                      +.|+||.++.+++++.|+|  .++..++.+.  +..+..|.+.+++++|+++|+++++|++++ |+++.+.+++.+++.+
T Consensus        80 v~T~D~~~v~vd~~v~yrI--~d~~~~~~~~--~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~  155 (266)
T cd03404          80 MLTGDENIVDVEFAVQYRI--SDPYDYLFNV--RDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAIL  155 (266)
T ss_pred             eEeCCCCEEEEEEEEEEEE--CCHHHHHhhC--CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHh
Confidence            8999999999999999995  5676665543  233457999999999999999999999987 9999999999999999


Q ss_pred             hcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhh
Q 023059          170 AYF--NIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAK-------------------FIVEKAEQDKKGAIIRAQGE  228 (288)
Q Consensus       170 ~~~--Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~-------------------~~~~~A~ae~~a~~~~A~~e  228 (288)
                      +.|  |++|++|.|++++||+++.+++++++.|+|++++++                   .....|+++|++.+++|+||
T Consensus       156 ~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~  235 (266)
T cd03404         156 DAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE  235 (266)
T ss_pred             hccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence            876  999999999999999999999998888877543321                   34556777778888888888


Q ss_pred             HHHHHHHHHHhhcCchhhH-HHHHHHHHHH
Q 023059          229 ATSAQLIGQAIAKNPAFIT-LRKIEAAREI  257 (288)
Q Consensus       229 a~a~~~~~~al~~~p~~~~-~~~le~~~~i  257 (288)
                      |++.++++++|+++|+++. ..+++++.++
T Consensus       236 a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  265 (266)
T cd03404         236 AARFESLLAEYKKAPDVTRERLYLETMEEV  265 (266)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence            9999999999999999765 5788888763

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.4e-36  Score=265.74  Aligned_cols=199  Identities=17%  Similarity=0.275  Sum_probs=175.7

Q ss_pred             hhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeee-eccccCCccEEEEE-EEEEEecCC
Q 023059           34 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTGSHDLQMVKIG-LRVLTRPVA  111 (288)
Q Consensus        34 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~TkD~~~v~v~-~~v~y~v~~  111 (288)
                      +++|+++|++||+||++ |||++.+.+++||+||++||++++..+|++.+..+.+ ..+.|+||..+.+| ..+.|.+++
T Consensus         1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp   79 (280)
T cd03406           1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP   79 (280)
T ss_pred             CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence            35789999999999999 9999877789999999999999999999999988874 57889999999999 568888888


Q ss_pred             CCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCH
Q 023059          112 DQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDVSITSLTFGK  188 (288)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~  188 (288)
                      ..+...+.+++.++...+|.+.+++++|+++|+++++|+++ +|+++.+.+++.+++.++.|  ||+|.+|.|++++||+
T Consensus        80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~  159 (280)
T cd03406          80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE  159 (280)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence            88888887777677788999999999999999999999997 89999999999999999987  9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023059          189 EFTFAIEAKQVAAQEAE-----RAKFIVEKAEQDKKGAIIRAQGEATSAQL  234 (288)
Q Consensus       189 ~~~~aie~~~~a~q~ae-----~a~~~~~~A~ae~~a~~~~A~~ea~a~~~  234 (288)
                      ++.+++ +++.|+.+..     +.+.....||+++.+.+++|+|+|+..++
T Consensus       160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~  209 (280)
T cd03406         160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI  209 (280)
T ss_pred             HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence            999999 5666655433     44566778999999999999998877555

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=2.2e-36  Score=258.30  Aligned_cols=210  Identities=25%  Similarity=0.387  Sum_probs=181.9

Q ss_pred             ecCCeEEEEEeeeccccceeeCCcceeecccccce-EEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHH
Q 023059           41 VEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERP-VIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIY  118 (288)
Q Consensus        41 V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~  118 (288)
                      |++||+||++ +||++.+ +++||+||++||++++ +.+|++.+.++++. ++.|+|++++.+++++.|||  .++..++
T Consensus         1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~~   76 (215)
T cd03403           1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRV--VDPVKAV   76 (215)
T ss_pred             CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEE--ecHHHHH
Confidence            7899999999 8999764 6999999999999999 99999999999865 58999999999999999995  6777666


Q ss_pred             HHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 023059          119 RTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ  198 (288)
Q Consensus       119 ~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~  198 (288)
                      ..+ .++ +..+.+.+++++|+++++++++|++++|+++++.+++.++..+++|||+|++|.|+++++|+++.+++++++
T Consensus        77 ~~~-~~~-~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~  154 (215)
T cd03403          77 YGV-EDY-RYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA  154 (215)
T ss_pred             hcC-CCH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence            543 233 446899999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh---cCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059          199 VAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA---KNPAFITLRKIEAAREIAQTISKSSNKVYLNAD  273 (288)
Q Consensus       199 ~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~---~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~  273 (288)
                      .|              +.++++++++|+|+++|.++.++|.+   .+|.+++++++|+++.+++   ..+++++++++
T Consensus       155 ~A--------------~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~  215 (215)
T cd03403         155 EA--------------EREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP  215 (215)
T ss_pred             HH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence            43              45566778888888888888888864   3689999999999999987   44566666653

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-33  Score=246.54  Aligned_cols=237  Identities=25%  Similarity=0.355  Sum_probs=185.0

Q ss_pred             HHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeC-Ccceeeccc---c-cceEEEeeeeeeeee-ee-ccccCCccE
Q 023059           26 IGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYP-EGTHLMIPW---F-ERPVIYDVRARPNLV-ES-TTGSHDLQM   98 (288)
Q Consensus        26 ~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~-pG~~~~~P~---~-~~v~~~~~~~~~~~~-~~-~~~TkD~~~   98 (288)
                      +++++++++++++++|++++.++++ +||++. +.+. ||+||++||   + ....+++.+.+.++. +. .+.|+|+..
T Consensus         9 ~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~   86 (291)
T COG0330           9 LLVILIVLLFSSIFVVKEGERGVVL-RFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI   86 (291)
T ss_pred             HHHHHHHHHHceeEEEcCCceEEEE-Eeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE
Confidence            5556777888999999999999999 999965 4677 999999999   3 334678888888888 44 699999999


Q ss_pred             EEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHH-HHHHHHHHHHHHHHhcCCeEEE
Q 023059           99 VKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAAYFNIALD  177 (288)
Q Consensus        99 v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v~  177 (288)
                      +.+|+++.||  +.++..++.++.  ..+..+.+.+++.+|++++++++++++++|+ .+...+.+.++..+++||+.|.
T Consensus        87 V~vd~~v~~r--v~d~~~~~~~v~--~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~  162 (291)
T COG0330          87 VSVDAVVQYR--VTDPQKAVYNVE--NAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVV  162 (291)
T ss_pred             EEEEEEEEEE--EcCHHHHHHhcC--CHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEE
Confidence            9999999999  577776666543  3666799999999999999999999999888 9999999999999999999999


Q ss_pred             EEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------------------
Q 023059          178 DVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA-------------------  238 (288)
Q Consensus       178 ~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~a-------------------  238 (288)
                      +|.|++++||+++.+++++++.|+++.+.   .+..|++++++.+++|+|+++|.+++++|                   
T Consensus       163 ~V~i~~i~~p~ev~~a~~~~~~Aer~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~  239 (291)
T COG0330         163 DVEIKDIDPPEEVQAAMEKQMAAERDKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIA  239 (291)
T ss_pred             EEEEeecCCCHHHHHHHHHHHHHHHHHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            99999999999999999888777665443   34455555555555555555554444444                   


Q ss_pred             --hhcC---chhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059          239 --IAKN---PAFITLRKIEAAREIAQTISKSSNKVYLNAD  273 (288)
Q Consensus       239 --l~~~---p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~  273 (288)
                        +...   |.+..+|+++.+.+.+.  +++++++++|.+
T Consensus       240 ~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~v~~p~~  277 (291)
T COG0330         240 AALREAPAAPQALAQRYLEELLEIAL--AGNSKVVVVPNS  277 (291)
T ss_pred             hhcccccchhHHHHHHHHHHHHHHhh--CCCCeEEEecCC
Confidence              3343   35666799998888654  343444444443

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=2.1e-34  Score=243.17  Aligned_cols=226  Identities=19%  Similarity=0.300  Sum_probs=196.5

Q ss_pred             HHHHhhccEEEecCCeEEEEEeeecccc-ceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEE
Q 023059           30 GLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLT  107 (288)
Q Consensus        30 ~~~~~~~~~~~V~~g~~gVv~~~~G~~~-~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y  107 (288)
                      .-+-++.|+.+|++.|++|++ |+|+.. +...+||+.|++|++++.+++|+|.+.+++|. ++.|||.+.+.+|+.|+|
T Consensus        47 fP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyy  125 (288)
T KOG2621|consen   47 FPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYY  125 (288)
T ss_pred             hHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEE
Confidence            334457788999999999999 999964 35679999999999999999999999999987 699999999999999999


Q ss_pred             ecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCC
Q 023059          108 RPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFG  187 (288)
Q Consensus       108 ~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p  187 (288)
                      |  +.|+..-+.+++ | ...-.+-.+++.+|+++++.++.|++++|+.|+.+++..|++..+.||++|++|.|+||.+|
T Consensus       126 r--i~dpi~sv~~V~-D-a~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp  201 (288)
T KOG2621|consen  126 R--ISDPIIAVNNVG-D-ADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLP  201 (288)
T ss_pred             E--ecCHHHHHHhcc-C-HHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeech
Confidence            9  788887777553 2 22235778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCchhhHHHHHHHHHHHHHHhcCC
Q 023059          188 KEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA---IAKNPAFITLRKIEAAREIAQTISKS  264 (288)
Q Consensus       188 ~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~a---l~~~p~~~~~~~le~~~~i~~~l~~~  264 (288)
                      .+.++++.      .++|        |.++++++++.||||..|.+.+++|   +.++|..+++|+|+.+..++.   .+
T Consensus       202 ~qlqrama------aeAe--------A~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia~---e~  264 (288)
T KOG2621|consen  202 AQLQRAMA------AEAE--------ATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIAA---EK  264 (288)
T ss_pred             Hhhhhhhh------chhh--------hhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhhc---CC
Confidence            99998883      1222        6678889999999999999988877   578999999999999998875   67


Q ss_pred             CCEEEEcCCcccc
Q 023059          265 SNKVYLNADDLLL  277 (288)
Q Consensus       265 ~~~i~l~~~~~~~  277 (288)
                      ++++++|-..+++
T Consensus       265 ~~tivfP~p~e~l  277 (288)
T KOG2621|consen  265 NSTIVFPLPIDLL  277 (288)
T ss_pred             CCCcccCCCHHHH
Confidence            8889998665433

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.98  E-value=5.6e-31  Score=224.14  Aligned_cols=161  Identities=19%  Similarity=0.241  Sum_probs=142.8

Q ss_pred             cEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHH
Q 023059           37 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLP  115 (288)
Q Consensus        37 ~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~  115 (288)
                      |+++|+|||.||++ +||++.+.+.+||+||++||++ ..++|+|.+.++.+. .+.|+|+.++.+++.+.||  +.|+.
T Consensus         1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~r--V~Dp~   76 (219)
T cd03402           1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWR--VVDTA   76 (219)
T ss_pred             CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEE--EcCHH
Confidence            68999999999999 9999877667999999999985 588999999988875 5999999999999999999  56777


Q ss_pred             HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-------hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH
Q 023059          116 TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAAYFNIALDDVSITSLTFGK  188 (288)
Q Consensus       116 ~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~  188 (288)
                      +++.+. .++ +..+.+.+++++|+++++|+++++++       +|+++.+++++.+++.++.|||+|.+++|+++.||+
T Consensus        77 ka~~~v-~~~-~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~  154 (219)
T cd03402          77 KAVFNV-DDY-EEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP  154 (219)
T ss_pred             HHHHHc-CCH-HHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence            665544 344 55799999999999999999999985       579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 023059          189 EFTFAIEAKQVAAQE  203 (288)
Q Consensus       189 ~~~~aie~~~~a~q~  203 (288)
                      ++.++|.+||.|+++
T Consensus       155 ei~~am~~R~~Ae~~  169 (219)
T cd03402         155 EIAQAMLQRQQASAI  169 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988755443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.96  E-value=3.1e-30  Score=213.59  Aligned_cols=162  Identities=30%  Similarity=0.464  Sum_probs=112.6

Q ss_pred             EEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee---ccccCCccEEEEEEEEEEecCCCCHH
Q 023059           39 YNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES---TTGSHDLQMVKIGLRVLTRPVADQLP  115 (288)
Q Consensus        39 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~TkD~~~v~v~~~v~y~v~~~~~~  115 (288)
                      ++|++||+||++ ++|++.. +++||+||++||.++++.+|++.+.+++..   .+.|+|+.++.+++++.|++  +++.
T Consensus         1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~   76 (179)
T PF01145_consen    1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP   76 (179)
T ss_dssp             ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred             CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence            579999999999 6898764 999999999999999999999999999987   89999999999999999995  8888


Q ss_pred             HHHHHh--CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q 023059          116 TIYRTL--GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFA  193 (288)
Q Consensus       116 ~~~~~~--g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a  193 (288)
                      .++.++  +.+..+..|++.+++++|+++++|+++|++++|.++.+.+++.+++.++++|++|.+|.|.++++|+++.++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~  156 (179)
T PF01145_consen   77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA  156 (179)
T ss_dssp             CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred             HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence            888877  356677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023059          194 IEAKQVAAQEA  204 (288)
Q Consensus       194 ie~~~~a~q~a  204 (288)
                      +++++.+++++
T Consensus       157 i~~~~~a~~~~  167 (179)
T PF01145_consen  157 IEEKQRAEQEA  167 (179)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98887776665

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=8.9e-29  Score=201.23  Aligned_cols=156  Identities=26%  Similarity=0.391  Sum_probs=140.0

Q ss_pred             ccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCH
Q 023059           36 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQL  114 (288)
Q Consensus        36 ~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~  114 (288)
                      +|+++|++||+||++ +||++.+ +++||+||++||+++++.+|++.+.+..+. .+.|+|+.++.+++++.|++  .++
T Consensus         1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv--~d~   76 (160)
T smart00244        1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRV--LDP   76 (160)
T ss_pred             CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEE--ccH
Confidence            589999999999999 8999775 899999999999999999999999988865 68999999999999999994  555


Q ss_pred             HHHHHHh-CccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHH
Q 023059          115 PTIYRTL-GENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTF  192 (288)
Q Consensus       115 ~~~~~~~-g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~  192 (288)
                      ..++.+. +.+.  ..+.+.+++++|+++++++++|+++ +|+++++.+++.+++.++++|++|.++.|+++++|+++++
T Consensus        77 ~~~~~~~~~~~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~  154 (160)
T smart00244       77 LKAVYRVLDADY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE  154 (160)
T ss_pred             HHHhhhcCCHHH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence            5554443 3322  4789999999999999999999999 7999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 023059          193 AIEAK  197 (288)
Q Consensus       193 aie~~  197 (288)
                      ++++|
T Consensus       155 ai~~k  159 (160)
T smart00244      155 AMEQQ  159 (160)
T ss_pred             HHHhh
Confidence            99866

prohibitin homologues

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.95  E-value=8.4e-28  Score=200.91  Aligned_cols=189  Identities=15%  Similarity=0.209  Sum_probs=144.0

Q ss_pred             ccEEE--ecCCeEEEEEeeeccccceeeCCcceeecccccceEE-Eeeeeeeeee-eeccccCCccEEEEEEEEEEecCC
Q 023059           36 HSLYN--VEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVI-YDVRARPNLV-ESTTGSHDLQMVKIGLRVLTRPVA  111 (288)
Q Consensus        36 ~~~~~--V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~-~~~~~~~~~~-~~~~~TkD~~~v~v~~~v~y~v~~  111 (288)
                      .|+.+  ||+.+++|+. |||+. .++++||+||..|+++++.. .+++...... ..+..|+||+.+.++.+++||+ .
T Consensus         5 ~n~vi~~VpQ~~a~VvE-R~GkF-~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv-~   81 (301)
T KOG2620|consen    5 TNTVIRFVPQQEAAVVE-RFGKF-HRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRV-V   81 (301)
T ss_pred             ceeeEEeechhHhHHHH-Hhhhh-hhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEE-e
Confidence            34444  9999999998 99995 47999999999999988753 3344333433 3478999999999999999997 2


Q ss_pred             CCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHH
Q 023059          112 DQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFT  191 (288)
Q Consensus       112 ~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~  191 (288)
                      ++... =..||.+..+..+..++++.+|..+++++++.++.+|++++..+.+++++.++.||+++....|+||.||+.+.
T Consensus        82 dp~~~-dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~  160 (301)
T KOG2620|consen   82 DPYAD-DASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVK  160 (301)
T ss_pred             ccccc-ccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHH
Confidence            22221 12235444445589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023059          192 FAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATS  231 (288)
Q Consensus       192 ~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a  231 (288)
                      ++|+....|+ ...+  ..+..+|++|++.+.+|+|++++
T Consensus       161 ~AM~~q~~Ae-R~kr--AailesEger~~~InrAEGek~s  197 (301)
T KOG2620|consen  161 RAMNMQNEAE-RMKR--AAILESEGERIAQINRAEGEKES  197 (301)
T ss_pred             HHHHHHHHHH-HHHH--HHHhhhhhhhHHhhhhhcchhhh
Confidence            9996443332 2222  23445555555555555555443

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.93  E-value=6.8e-24  Score=174.37  Aligned_cols=234  Identities=18%  Similarity=0.312  Sum_probs=178.8

Q ss_pred             HHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEE-EEEEE
Q 023059           30 GLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIG-LRVLT  107 (288)
Q Consensus        30 ~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~-~~v~y  107 (288)
                      ++.+++++.+.|++||+||.+ |-|.....+.+||+|+.+||+.++..+.++.|+-+... .|.|+.|+.+.+| +-|.-
T Consensus        15 ~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN   93 (322)
T KOG2962|consen   15 LVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVN   93 (322)
T ss_pred             HHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhh
Confidence            445567888999999999999 75556777899999999999999999999999887754 7999999999887 44444


Q ss_pred             ecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhc--CCeEEEEEEeecc
Q 023059          108 RPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAY--FNIALDDVSITSL  184 (288)
Q Consensus       108 ~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~--~Gi~v~~v~I~~i  184 (288)
                      .+.++.+.++..+|+.||...++-+.+...+.+.+|.+++.|++- --++|.++++.+|+..+..  -|++|..|+++..
T Consensus        94 ~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKP  173 (322)
T KOG2962|consen   94 FLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKP  173 (322)
T ss_pred             hhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCC
Confidence            566888899999999999999999999999999999999999994 6799999999999999864  4999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---------------------------
Q 023059          185 TFGKEFTFAIEAKQVAAQ-----EAERAKFIVEKAEQDKKGAIIRAQGEATSA---------------------------  232 (288)
Q Consensus       185 ~~p~~~~~aie~~~~a~q-----~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~---------------------------  232 (288)
                      ..|+.+++..|.. .++.     .+++++...+.||.+|...+++|+..|+.+                           
T Consensus       174 kIPEaiRrN~E~M-E~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~La  252 (322)
T KOG2962|consen  174 KIPEAIRRNFELM-EAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLA  252 (322)
T ss_pred             CChHHHHHhHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHh
Confidence            9999999888532 2221     222333333344444444444444333332                           


Q ss_pred             -----------HHHHHH----hhcCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059          233 -----------QLIGQA----IAKNPAFITLRKIEAAREIAQTISKSSNKVYLNAD  273 (288)
Q Consensus       233 -----------~~~~~a----l~~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~  273 (288)
                                 +...+|    +.-+|++++++.+++.-.        |++||++.+
T Consensus       253 rekskADAe~Y~a~k~AeaNKlkLTpEyLeLkk~~AIAs--------NsKIyfGd~  300 (322)
T KOG2962|consen  253 REKSKADAEYYRALKEAEANKLKLTPEYLELKKIDAIAS--------NSKIYFGDK  300 (322)
T ss_pred             hhhhhccHHHHHHHHHHhhccccCCHHHHHHHHHHHHHh--------cCeeeeccc
Confidence                       222222    345899999888875533        788998765

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.86  E-value=3.2e-21  Score=150.52  Aligned_cols=121  Identities=20%  Similarity=0.299  Sum_probs=113.8

Q ss_pred             EEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHH
Q 023059           77 IYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRE  155 (288)
Q Consensus        77 ~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~  155 (288)
                      .||++.++.+.+..+.|+||.++.+++++.|+|++.++..+|.++|.++.+..|.+.+++++|+++++|+++|+++ +|+
T Consensus         2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~   81 (124)
T cd03400           2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK   81 (124)
T ss_pred             cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence            3678888888888999999999999999999998888888999998777788899999999999999999999996 899


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059          156 TVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK  197 (288)
Q Consensus       156 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (288)
                      +|.+.+++.++..+++||++|.+|+|++++||+++.++|++|
T Consensus        82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999876

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.86  E-value=8.3e-21  Score=161.08  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=134.5

Q ss_pred             HhhccEEEecCCeEEEEEeeeccccceeeCCcceeec----cccc---------------ceEEEeeeeeeeee------
Q 023059           33 AATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMI----PWFE---------------RPVIYDVRARPNLV------   87 (288)
Q Consensus        33 ~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~----P~~~---------------~v~~~~~~~~~~~~------   87 (288)
                      +..+|.++|++||.||++ ++|++.+ ++.||.|+.+    |++.               .++.++.+.+....      
T Consensus        11 i~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   88 (207)
T cd03408          11 IKNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAP   88 (207)
T ss_pred             cccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCC
Confidence            346789999999999999 8999764 6777777554    4432               36778888765422      


Q ss_pred             -eeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhCCHhHHhhh--HHHH
Q 023059           88 -ESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETV  157 (288)
Q Consensus        88 -~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~-------~~~~~l~~~v~~~lr~~i~~~~~~ei~~~--R~~i  157 (288)
                       .....|+|++++.+++++.|+  +.|+..++.+++..       ..+..+.+.+++++|++++++++++++.+  |++|
T Consensus        89 ~~~~~~~~~~v~v~v~~~~~~k--I~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i  166 (207)
T cd03408          89 VFGRDSEFGGVPLRAFGTYSLK--VTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDEL  166 (207)
T ss_pred             eeeeCCccceEEEEeeEEEEEE--EcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHH
Confidence             224568899999999999999  68999999988521       24557899999999999999999999987  9999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059          158 SREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK  197 (288)
Q Consensus       158 ~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (288)
                      ++.+++.+++.+++||++|.+|.|++|++|+++++++.++
T Consensus       167 ~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         167 SKAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999998654

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.81  E-value=2.2e-18  Score=160.42  Aligned_cols=180  Identities=16%  Similarity=0.196  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHHHHhhccEEE-ecCCeEEEEEeee-c-----cccceeeCCcceeecccccceEEEeeeeeeeeee-eccc
Q 023059           21 IKVGVIGGLGLYAATHSLYN-VEGGHRAIMFNRI-V-----GVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTG   92 (288)
Q Consensus        21 ~~~~v~~~~~~~~~~~~~~~-V~~g~~gVv~~~~-G-----~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~   92 (288)
                      ++++++++++++|+...+|+ .++++.-|+.++| |     |....++.+|+||++|++|...++|++....++. ..+.
T Consensus        17 vvv~i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~   96 (548)
T COG2268          17 VVVVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVY   96 (548)
T ss_pred             HHHHHHHHHHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeE
Confidence            33334444444444446665 4555544444222 0     3455789999999999999999999999999987 4799


Q ss_pred             cCCccEEEEEEEEEEec--CCCCHHHHHHHhCcc----ccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHH
Q 023059           93 SHDLQMVKIGLRVLTRP--VADQLPTIYRTLGEN----YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILT  166 (288)
Q Consensus        93 TkD~~~v~v~~~v~y~v--~~~~~~~~~~~~g~~----~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~  166 (288)
                      |+||.|+++++..+.++  +..+...+..++|..    .....+...+.+.+|.+++++++.+++++|..|.+.+...+.
T Consensus        97 t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~  176 (548)
T COG2268          97 TKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVG  176 (548)
T ss_pred             ecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHH
Confidence            99999999998888776  233444566666633    455667888999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEEEEeecccCC-------HHHHHHHHHHHHH
Q 023059          167 ERAAYFNIALDDVSITSLTFG-------KEFTFAIEAKQVA  200 (288)
Q Consensus       167 ~~l~~~Gi~v~~v~I~~i~~p-------~~~~~aie~~~~a  200 (288)
                      ..|++.|+.|+++.|.|+..+       ..|.++.-.++++
T Consensus       177 ~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~  217 (548)
T COG2268         177 DDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA  217 (548)
T ss_pred             HHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHH
Confidence            999999999999999999998       8899998666544

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.72  E-value=3.3e-17  Score=128.55  Aligned_cols=116  Identities=13%  Similarity=0.178  Sum_probs=100.8

Q ss_pred             Eeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHH----HHHHhC---ccccccccchHHHHHHHHHHhhCCHhH
Q 023059           78 YDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPT----IYRTLG---ENYNERVLPSIIHETLKAVVAQYNASQ  149 (288)
Q Consensus        78 ~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~----~~~~~g---~~~~~~~l~~~v~~~lr~~i~~~~~~e  149 (288)
                      +|++.+.++++. .+.|+|++++.+++++.|||  .++..    ++.+++   .+..+..+.+.+++++|+++|+|+++|
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV--~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e   79 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKV--GGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE   79 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEe--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            467888888876 68999999999999999996  44443    344443   245677889999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 023059          150 LITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIE  195 (288)
Q Consensus       150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie  195 (288)
                      ++++|++|.+++.+.++..+++||++|.++.|++|++|+++.+++-
T Consensus        80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~  125 (128)
T cd03399          80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG  125 (128)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence            9999999999999999999999999999999999999999888763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.69  E-value=7e-16  Score=134.26  Aligned_cols=160  Identities=12%  Similarity=0.169  Sum_probs=133.3

Q ss_pred             EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeeec-cccCCccEEEEEEEEEEecCCCCHHH
Q 023059           38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVEST-TGSHDLQMVKIGLRVLTRPVADQLPT  116 (288)
Q Consensus        38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~TkD~~~v~v~~~v~y~v~~~~~~~  116 (288)
                      |+...+.+..++.+  ||+.+..+-+| .|++|| +++.++|+.+.++++..+ +.|+.|+|+.+....+.++..+++..
T Consensus         2 f~~~~~~~~l~itg--~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    2 FKVAGASQYLAITG--GGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CccCCccceEEeec--ccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            56677888877762  55555556666 477789 999999999999999886 99999999999999999988898765


Q ss_pred             HHHH-----hC--ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH-
Q 023059          117 IYRT-----LG--ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGK-  188 (288)
Q Consensus       117 ~~~~-----~g--~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-  188 (288)
                      +...     +|  .+....++...+.+..|.++++|+++|+|.+|.+|...+++..+.++..+||.|.++.|+|+...+ 
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g  157 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG  157 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence            5332     13  334455677889999999999999999999999999999999999999999999999999998777 


Q ss_pred             -HHHHHHHHHHHHH
Q 023059          189 -EFTFAIEAKQVAA  201 (288)
Q Consensus       189 -~~~~aie~~~~a~  201 (288)
                       +|..++-.++.++
T Consensus       158 ~~YlssLGka~tae  171 (428)
T KOG2668|consen  158 HEYLSSLGKATTAE  171 (428)
T ss_pred             hHHHHHhhhHHHHH
Confidence             7999997666554

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.58  E-value=2.5e-14  Score=110.05  Aligned_cols=106  Identities=20%  Similarity=0.282  Sum_probs=93.2

Q ss_pred             eccccCCccEEEEEEEEEEecCCCCHHHHHHHh-CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHH
Q 023059           89 STTGSHDLQMVKIGLRVLTRPVADQLPTIYRTL-GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTE  167 (288)
Q Consensus        89 ~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~-g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~  167 (288)
                      ..+.|+|+.++++++++.|++  .++..++.++ +.+. ...+.+.+.+++|.++++++++++.++|++|++.+++.+..
T Consensus        14 ~~~~t~d~~~i~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~   90 (121)
T cd02106          14 QEVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQE   90 (121)
T ss_pred             ceEEecCCCEEEEEEEEEEEE--eCHHHHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHH
Confidence            368999999999999999996  4454444443 3333 56799999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059          168 RAAYFNIALDDVSITSLTFGKEFTFAIEAK  197 (288)
Q Consensus       168 ~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (288)
                      .+++||++|.+|.|.++++|+++.++++++
T Consensus        91 ~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          91 DLDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            999999999999999999999999999765

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.58  E-value=9.7e-14  Score=117.41  Aligned_cols=162  Identities=16%  Similarity=0.136  Sum_probs=128.5

Q ss_pred             hhccEEEecCCeEEEEEeeeccccceeeCCccee-------------------ecccccceEEEeeeeee-eee----ee
Q 023059           34 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHL-------------------MIPWFERPVIYDVRARP-NLV----ES   89 (288)
Q Consensus        34 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~----~~   89 (288)
                      -.+|-.+|++||.||.+ +-|++.+ +.+||.|-                   ..||-..|+.++++... ..+    |.
T Consensus        12 ~~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi   89 (211)
T PF13421_consen   12 KNGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPI   89 (211)
T ss_pred             cCCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCe
Confidence            35788899999999999 5577775 99999993                   34666778888888763 222    22


Q ss_pred             ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCc-------cccccccchHHHHHHHHHHh--hCCHhHHhhhHHHHHHH
Q 023059           90 TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE-------NYNERVLPSIIHETLKAVVA--QYNASQLITQRETVSRE  160 (288)
Q Consensus        90 ~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~-------~~~~~~l~~~v~~~lr~~i~--~~~~~ei~~~R~~i~~~  160 (288)
                      .....+-.++.+.+...|.+++.|+..|+.++..       +.....+++.+.+.+.+.++  ++++.|+.++..+|++.
T Consensus        90 ~~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~  169 (211)
T PF13421_consen   90 PYRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEA  169 (211)
T ss_pred             eecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3344444478888888888889999999998741       22334566666666777776  58999999999999999


Q ss_pred             HHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059          161 IRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK  197 (288)
Q Consensus       161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (288)
                      +++.++..++.+|++|.++.|.+|++|++.++.|+++
T Consensus       170 ~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~  206 (211)
T PF13421_consen  170 LKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR  206 (211)
T ss_pred             HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999644

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.93  E-value=3.2e-08  Score=84.71  Aligned_cols=164  Identities=12%  Similarity=0.073  Sum_probs=123.5

Q ss_pred             HhhccEEEecCCeEEEEEeeeccccceeeCCcce-------------------eecccccceEEEeeeeee-eee----e
Q 023059           33 AATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTH-------------------LMIPWFERPVIYDVRARP-NLV----E   88 (288)
Q Consensus        33 ~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~-------------------~~~P~~~~v~~~~~~~~~-~~~----~   88 (288)
                      +-.+|..+|.|++-++.++ -|++.+..-++|.|                   |..|+-++|+.++++.+. +.+    |
T Consensus        36 I~nGs~l~Vrp~qmamfvn-~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qp  114 (345)
T COG4260          36 IQNGSILHVRPNQMAMFVN-GGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQP  114 (345)
T ss_pred             eccCcEEEEecCceEEEEc-CCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCC
Confidence            3456788999999999985 35555544558866                   345777889999998876 444    2


Q ss_pred             ecccc-CCccEEEEEEEEEEecCCCCHHHHHHHhCc-------cccccccchHHHHHHHHHHhhC--CHhHHhhhHHHHH
Q 023059           89 STTGS-HDLQMVKIGLRVLTRPVADQLPTIYRTLGE-------NYNERVLPSIIHETLKAVVAQY--NASQLITQRETVS  158 (288)
Q Consensus        89 ~~~~T-kD~~~v~v~~~v~y~v~~~~~~~~~~~~g~-------~~~~~~l~~~v~~~lr~~i~~~--~~~ei~~~R~~i~  158 (288)
                      .++.. .++..+.+.+.-.|.+.+.|+..++..+..       +..+..+-+.+..++...+.++  ++..+-++--+|+
T Consensus       115 in~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~els  194 (345)
T COG4260         115 INYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELS  194 (345)
T ss_pred             eecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHH
Confidence            33443 667777777777777779999998887731       2223345567777777777765  4455556888999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059          159 REIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK  197 (288)
Q Consensus       159 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~  197 (288)
                      ..+++.|...+..+|..|++|+|.+|++|++.+..|+.+
T Consensus       195 k~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r  233 (345)
T COG4260         195 KYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMR  233 (345)
T ss_pred             HHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence            999999999999999999999999999999999999644

>PTZ00491 major vault protein; Provisional

Probab=98.31  E-value=4.5e-05  Score=75.21  Aligned_cols=146  Identities=10%  Similarity=0.079  Sum_probs=96.8

Q ss_pred             EEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeee---------eeee---e------eccccCCccEEE
Q 023059           39 YNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRAR---------PNLV---E------STTGSHDLQMVK  100 (288)
Q Consensus        39 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~---------~~~~---~------~~~~TkD~~~v~  100 (288)
                      +.||-+...-+++.-.+..+.+.+|-+++.-|- +.+..+++..-         .+.+   |      ..+-|+|...+.
T Consensus       465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~  543 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA  543 (850)
T ss_pred             EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence            446655544444321233456889999998887 66666655321         1111   1      247799999999


Q ss_pred             EEEEEEEecC--CCCHH---HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHH-HHHHHHHHH------HH-
Q 023059          101 IGLRVLTRPV--ADQLP---TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKIL------TE-  167 (288)
Q Consensus       101 v~~~v~y~v~--~~~~~---~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~-i~~~v~~~l------~~-  167 (288)
                      +..+..|..+  ++|+.   .+|.  .+|+... +-..+.+-+|..+++.++++++.+-.. |.+.+....      ++ 
T Consensus       544 l~LsYnW~F~v~~~d~~~~~k~Fs--v~DFvGd-~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~  620 (850)
T PTZ00491        544 LQLSYNWYFDVTDGNPEDAQKCFS--VPDFVGD-ACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDS  620 (850)
T ss_pred             EEEEEEEEEecCCCChhhHhheec--cCchHHH-HHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccc
Confidence            9988888864  44453   4444  3677654 678899999999999999999975433 334444411      11 


Q ss_pred             -HHhcCCeEEEEEEeecccCCH
Q 023059          168 -RAAYFNIALDDVSITSLTFGK  188 (288)
Q Consensus       168 -~l~~~Gi~v~~v~I~~i~~p~  188 (288)
                       .|...|+.|++|.|+++.+-+
T Consensus       621 l~F~~N~lvit~VDvqsvEpvD  642 (850)
T PTZ00491        621 LRFPANNLVITNVDVQSVEPVD  642 (850)
T ss_pred             eEEccCCeEEEEEeeeeeeecC
Confidence             346889999999999999755

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=98.04  E-value=5.6e-05  Score=64.94  Aligned_cols=172  Identities=15%  Similarity=0.256  Sum_probs=109.3

Q ss_pred             eeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH
Q 023059           81 RARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR  159 (288)
Q Consensus        81 ~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~  159 (288)
                      .+..++.|. ....|||..+.+.+.|..|-   +..++.   |.-..+.++...-++.+..+-|.-+-.+++++-+.|++
T Consensus       123 nPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk  196 (316)
T PF12127_consen  123 NPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISK  196 (316)
T ss_pred             CCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHH
Confidence            333444443 46699999999999999884   333332   44445556666666777777777888899999999998


Q ss_pred             HHHHHHHHHH-hcCCeEEEEEEeecccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h
Q 023059          160 EIRKILTERA-AYFNIALDDVSITSLTFGKEFTFAIE------AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQ-----G  227 (288)
Q Consensus       160 ~v~~~l~~~l-~~~Gi~v~~v~I~~i~~p~~~~~aie------~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~-----~  227 (288)
                      .+.++   -| ...-++|.|+.|-|++..+++-..++      ++.+|+..+|.-+......|+|-.++..+.+     +
T Consensus       197 ~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkvVeA  273 (316)
T PF12127_consen  197 TVLEK---GLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKVVEA  273 (316)
T ss_pred             HHHhh---CCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence            87664   34 35569999999999999998766653      2334444444433333444444433333333     3


Q ss_pred             hHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHHHHh
Q 023059          228 EATSAQLIGQAIAKNP----AFITLRKIEAAREIAQTI  261 (288)
Q Consensus       228 ea~a~~~~~~al~~~p----~~~~~~~le~~~~i~~~l  261 (288)
                      ||+--..+++|+++..    +|++++-+++-.+|=+.+
T Consensus       274 eaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si  311 (316)
T PF12127_consen  274 EAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESI  311 (316)
T ss_pred             hhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhc
Confidence            4555667788886432    456666666655554433

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.77  E-value=0.00022  Score=61.08  Aligned_cols=152  Identities=14%  Similarity=0.209  Sum_probs=96.1

Q ss_pred             eeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH
Q 023059           81 RARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR  159 (288)
Q Consensus        81 ~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~  159 (288)
                      .+..++.|. ....|||..+.+.+.+..|   .+..++.   |.-..+.++...=++.+..+-|.-+-.+++++-+.|++
T Consensus       128 nPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk  201 (316)
T PRK13665        128 NPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK  201 (316)
T ss_pred             CCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence            334444443 4679999999999999888   3444333   44455566777777777777788888999999999997


Q ss_pred             HHHHHHHHHHh-cCCeEEEEEEeecccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h
Q 023059          160 EIRKILTERAA-YFNIALDDVSITSLTFGKEFTFAIE------AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQ-----G  227 (288)
Q Consensus       160 ~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~aie------~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~-----~  227 (288)
                      .+.+   +-|+ ..-++|.|+.|-|++..+++-..++      ++.+|+..+|+-+......|+|-+++..+.+     +
T Consensus       202 ~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAkvVeA  278 (316)
T PRK13665        202 TVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAKVVEA  278 (316)
T ss_pred             HHHh---ccCCcCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6644   4453 5569999999999999998766663      2333333443333223333333333322222     2


Q ss_pred             hHHHHHHHHHHhhc
Q 023059          228 EATSAQLIGQAIAK  241 (288)
Q Consensus       228 ea~a~~~~~~al~~  241 (288)
                      ||+--+.+++|+++
T Consensus       279 eaeVP~Ama~A~r~  292 (316)
T PRK13665        279 EAEVPLAMAEALRS  292 (316)
T ss_pred             hhhchHHHHHHHHc
Confidence            44455667777754

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=97.09  E-value=0.051  Score=43.85  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             ccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCC
Q 023059           96 LQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFN  173 (288)
Q Consensus        96 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G  173 (288)
                      +....+.+.+.|+++-+....-..       ++  .+.+++.+...+++.+.+|+.+  .++++..++++.+++-+..-+
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~~el~-------~~--~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~  146 (159)
T COG1580          76 PKDRYVKIAITLEVANKALLEELE-------EK--KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ  146 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHHHHHH-------Hh--hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence            556677888999864444433222       12  5889999999999999999996  899999999999999998866


Q ss_pred             eEEEEEEeeccc
Q 023059          174 IALDDVSITSLT  185 (288)
Q Consensus       174 i~v~~v~I~~i~  185 (288)
                       .|.+|..++..
T Consensus       147 -~V~dV~fT~fi  157 (159)
T COG1580         147 -VVKDVLFTNFI  157 (159)
T ss_pred             -eeEEEeeehhh
Confidence             78888877643

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.16  E-value=0.18  Score=42.41  Aligned_cols=159  Identities=13%  Similarity=0.249  Sum_probs=88.7

Q ss_pred             ccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHH-h
Q 023059           92 GSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA-A  170 (288)
Q Consensus        92 ~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l-~  170 (288)
                      ...||..+...+.+..|   .+...+   +|....+.++...-...+..+-++-.-.+++.+-+.|++.+.++   -| .
T Consensus       139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~  209 (328)
T COG4864         139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDS  209 (328)
T ss_pred             eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCC
Confidence            46688888877777766   333333   34344455555555666666666777788888888888876542   23 2


Q ss_pred             cCCeEEEEEEeecccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHh
Q 023059          171 YFNIALDDVSITSLTFGKEFTFAI------EAKQVAAQEAERAKFIVEKAEQDKKGAIIRA-----QGEATSAQLIGQAI  239 (288)
Q Consensus       171 ~~Gi~v~~v~I~~i~~p~~~~~ai------e~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A-----~~ea~a~~~~~~al  239 (288)
                      ...+++.++.|.|++..+++-.-+      .++.+|+..+++-+.....-|+|-++++.+-     ++|++.-..+++||
T Consensus       210 gtafeilsidiadvdigkniga~lqteqa~adk~iaqakaeerramava~eqemrarveemrakvveaeaevp~als~al  289 (328)
T COG4864         210 GTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEERRAMAVALEQEMRARVEEMRAKVVEAEAEVPLALSEAL  289 (328)
T ss_pred             CceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            445899999999999988765444      2333333333322222222222222222111     23444455667777


Q ss_pred             hcCc----hhhHHHHHHHHHHHHH
Q 023059          240 AKNP----AFITLRKIEAAREIAQ  259 (288)
Q Consensus       240 ~~~p----~~~~~~~le~~~~i~~  259 (288)
                      .+..    +|+.++.+++-..|-+
T Consensus       290 r~gnigvmdy~n~~nv~adt~mr~  313 (328)
T COG4864         290 REGNIGVMDYYNMKNVQADTAMRD  313 (328)
T ss_pred             HhCCchhhhhhhhhcccccHHHHH
Confidence            5422    4555555555444433

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=94.79  E-value=1  Score=36.75  Aligned_cols=52  Identities=10%  Similarity=0.094  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++.+.++..+.+-  .|.+|.+++.
T Consensus       110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F  163 (166)
T PRK12785        110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV  163 (166)
T ss_pred             chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence            4778888888999999999985  79999999999999988753  3777777664

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=93.47  E-value=0.42  Score=41.22  Aligned_cols=79  Identities=14%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhcCCeEEEEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023059          160 EIRKILTERAAYFNIALDDVSITSLTFGK-EFTFAIEAKQVAAQEAERAK-FIVEKAEQDKKGAIIRAQGEATSAQLIGQ  237 (288)
Q Consensus       160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~aie~~~~a~q~ae~a~-~~~~~A~ae~~a~~~~A~~ea~a~~~~~~  237 (288)
                      .+.+.+.+.+++. +.=..+.|.++.+.+ .+-+.+.+.......+++.+ .....|++++++.+++|++++++..+.++
T Consensus       120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Ae  198 (242)
T cd03405         120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE  198 (242)
T ss_pred             HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444432 333467777777643 33445544444445555544 55557777777777777777777777776


Q ss_pred             Hh
Q 023059          238 AI  239 (288)
Q Consensus       238 al  239 (288)
                      |.
T Consensus       199 a~  200 (242)
T cd03405         199 AY  200 (242)
T ss_pred             HH
Confidence            65

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=93.16  E-value=0.36  Score=36.50  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=64.1

Q ss_pred             ccccCCccEEEEEEEEEEecCC--CCHHHHHHHhC-ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH-HHH---
Q 023059           90 TTGSHDLQMVKIGLRVLTRPVA--DQLPTIYRTLG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR-EIR---  162 (288)
Q Consensus        90 ~~~TkD~~~v~v~~~v~y~v~~--~~~~~~~~~~g-~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~-~v~---  162 (288)
                      .+-|+|-..+.+..+..|..+.  .++.+.-.-+. +|+... +-..+.+-+|..+++.+.+++..+-..|-. .+.   
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd-~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~   88 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGD-ACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFD   88 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHH-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS-
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHH-HHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCC
Confidence            4679999999998888887644  33333333333 677654 578899999999999999999975443332 221   


Q ss_pred             --HHHHH--HHhcCCeEEEEEEeecccCC
Q 023059          163 --KILTE--RAAYFNIALDDVSITSLTFG  187 (288)
Q Consensus       163 --~~l~~--~l~~~Gi~v~~v~I~~i~~p  187 (288)
                        .+.+.  .+...|+.|++|.|+++.|-
T Consensus        89 ~~~~~r~~~~F~~N~LvIt~vDvqsvEpv  117 (118)
T PF11978_consen   89 ENGEVRDGLRFPANNLVITSVDVQSVEPV  117 (118)
T ss_dssp             --E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred             CCCCccceeEEcCCCeEEEEEeeeEeccC
Confidence              22222  24678999999999998763

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=91.59  E-value=1.4  Score=38.52  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCCeEEE--EEEeecccCCH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023059          161 IRKILTERAAYFNIALD--DVSITSLTFGK-EFTFAIEAKQVAAQEAE-RAKFIVEKAEQDKKGAIIRAQGEATSAQLIG  236 (288)
Q Consensus       161 v~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~aie~~~~a~q~ae-~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~  236 (288)
                      +.+.+.+.++.. +.-.  .+.|.++.+-+ ..-..+.+...+.+.++ +++.....|++++++.+.+|+|+|++..+.+
T Consensus       143 i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A  221 (266)
T cd03404         143 IAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA  221 (266)
T ss_pred             HHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            444444444432 2222  68888887754 34455654444433333 3444555666677778888999998888888


Q ss_pred             HHhhcCc
Q 023059          237 QAIAKNP  243 (288)
Q Consensus       237 ~al~~~p  243 (288)
                      +|.++..
T Consensus       222 ~a~~~~~  228 (266)
T cd03404         222 EAYKEEV  228 (266)
T ss_pred             HHHHHhH
Confidence            8875443

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=91.49  E-value=7  Score=32.21  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             cEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEE
Q 023059           97 QMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIAL  176 (288)
Q Consensus        97 ~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v  176 (288)
                      ....+.+++.|..  ++.. ...++    ..+  .+.++..+...+++.+.+|+. .+.++.++++++++..+.+-  .|
T Consensus       101 ~r~~vki~l~~e~--~d~~-l~~EL----~~r--~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV  168 (181)
T PRK06654        101 KTFVVKLALGYAE--NNKN-ILNEL----GRR--KVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EI  168 (181)
T ss_pred             ceEEEEEEEEEEc--CCHH-HHHHH----Hhc--cHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ce
Confidence            4445667777763  3333 33322    222  588999999999999999999 89999999999999888753  36


Q ss_pred             EEEEeecc
Q 023059          177 DDVSITSL  184 (288)
Q Consensus       177 ~~v~I~~i  184 (288)
                      .+|.+++.
T Consensus       169 ~~VYFTeF  176 (181)
T PRK06654        169 KDIAFTQI  176 (181)
T ss_pred             EEEEEEEE
Confidence            66666553

>TIGR01932 hflC HflC protein

Probab=91.29  E-value=1.5  Score=39.61  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059          208 KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA  240 (288)
Q Consensus       208 ~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~  240 (288)
                      ......+++++++..++|+|++++.+++++|.+
T Consensus       224 ~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a  256 (317)
T TIGR01932       224 IARMHRSQGEEKAEEILGKAEYEVRKILSEAYR  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666778888888888888888888888863

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=91.18  E-value=1.5  Score=39.95  Aligned_cols=63  Identities=10%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             EEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059          178 DVSITSLTFGK-EFTFAIEAKQVAAQEAERAK-FIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA  240 (288)
Q Consensus       178 ~v~I~~i~~p~-~~~~aie~~~~a~q~ae~a~-~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~  240 (288)
                      .+.|.++.+-+ .+=..+.+....++.+|+.+ .....|+++++++.++|+|+.++.++.++|.+
T Consensus       202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~  266 (334)
T PRK11029        202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER  266 (334)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46777777654 44555655565666666654 45778888999998898888888888888764

>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=90.77  E-value=7.9  Score=31.56  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYF-N-IALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++.+.+|+.+  .++.+.+++..+++..++.. | -.|.+|.+++.
T Consensus       110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f  167 (170)
T PRK05696        110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF  167 (170)
T ss_pred             hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence            4778999999999999999985  78888888888888777542 2 25677776653

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=90.55  E-value=5  Score=29.18  Aligned_cols=52  Identities=15%  Similarity=0.209  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++++.+|+.+  .++.+.+++++.+++.+.+-  .|.+|.+++.
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            5788999999999999999994  89999999999999998543  3777777653

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=89.03  E-value=12  Score=30.99  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.+.++..+.+-  .|.+|.+++.
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F  179 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF  179 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence            4778999999999999999985  78999999999999999763  4677776653

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=87.33  E-value=14  Score=29.84  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCC--eEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFN--IALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G--i~v~~v~I~~i  184 (288)
                      .+.+++.+-..++..+.+|+.+  .++.+.+++++.++..+..-+  -.|.+|.+++.
T Consensus       102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            4678888888999999999985  889999999999999886432  35777777653

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=86.91  E-value=8.4  Score=30.44  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus        86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f  139 (142)
T PRK07718         86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF  139 (142)
T ss_pred             ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence            4678888889999999999985  7999999999999988876 4 5777777653

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=86.84  E-value=4.3  Score=35.52  Aligned_cols=29  Identities=34%  Similarity=0.406  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 023059          211 VEKAEQDKKGAIIRAQGEATSAQLIGQAI  239 (288)
Q Consensus       211 ~~~A~ae~~a~~~~A~~ea~a~~~~~~al  239 (288)
                      +..|++++.+.+.+|+|+|++..+.+++.
T Consensus       163 ~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~  191 (262)
T cd03407         163 VHKAEAEKIKDIKAAEADAEAKRLQGVGA  191 (262)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            33444444445555555555555554443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=82.26  E-value=22  Score=27.90  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 023059          131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYF-N-IALDDVSITSL  184 (288)
Q Consensus       131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i  184 (288)
                      .+.+++.+-..+++.+.+|+.+  .|+.+.+++.++++..+.+- | -.|.+|.+++.
T Consensus        77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            4789999999999999999985  89999999999999998642 2 24777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 27/125 (21%), Positives = 67/125 (53%), Gaps = 17/125 (13%)

Query: 137 TLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEA 196
           TL++V+ Q +  +L+++R+ ++ ++++I+ E    + I +  V I      K+       
Sbjct: 65  TLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEI------KDVELPAGM 118

Query: 197 KQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA---IAKNPAFITLRKIEA 253
           ++  A++AE        AE++++  I  A+ E  +A+ + +A   I+++P  + LR ++ 
Sbjct: 119 QKAMARQAE--------AERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQT 170

Query: 254 AREIA 258
             ++A
Sbjct: 171 ISDVA 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 45/295 (15%), Positives = 91/295 (30%), Gaps = 79/295 (26%)

Query: 31  LYAATHS-LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPN---- 85
           +Y      LYN          N++   K  V     +L +    R  + ++R   N    
Sbjct: 111 MYIEQRDRLYND---------NQVF-AKYNVSRLQPYLKL----RQALLELRPAKNVLID 156

Query: 86  ---------LVESTTGSHDLQM--------VKIGLRVLTRPVADQLPTIYRTLGENYNER 128
                    +      S+ +Q         + +        V + L  +   +  N+  R
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 129 VLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFN--IALDDVS------ 180
              S               S +  +  ++  E+R++L  +  Y N  + L +V       
Sbjct: 217 SDHS---------------SNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWN 260

Query: 181 ---------ITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATS 231
                    +T  T  K+ T  + A        +     +   E   K  +++       
Sbjct: 261 AFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQ 316

Query: 232 AQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDN 286
             L  + +  NP  +++  I  A  I   ++   N  ++N D  L  + E  L+ 
Sbjct: 317 -DLPREVLTTNPRRLSI--I--AESIRDGLATWDNWKHVNCDK-LTTIIESSLNV 365

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 83/233 (35%)

Query: 60  VYPEGTH-----LMIPWFERPVIYDVR------ARPNLV-----ESTTGSHDLQMVKIGL 103
           V+P   H     L + WF+     DV        + +LV     EST     + +     
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYL----- 433

Query: 104 RVLTRPVADQLPTIYRTLGENYN-ERVLPSIIHETLKAVVAQY----------NASQLIT 152
               +   +    ++R++ ++YN  +   S   + +   + QY          N      
Sbjct: 434 --ELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEH--P 487

Query: 153 QRETVSREI--------RKILTERAA-------------------YF--NIALDDVSITS 183
           +R T+ R +        +KI  +  A                   Y   N    +  + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 184 LTFGKEFTFAIEAKQVAAQEAERAKF--IVEKAEQDKKGAIIRAQGEATSAQL 234
           +    +F   IE   +       +K+  ++  A   +  AI     E    Q+
Sbjct: 548 I---LDFLPKIEENLI------CSKYTDLLRIALMAEDEAIF----EEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.96
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.9
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.83
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.72
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.45

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.8e-29  Score=209.97  Aligned_cols=171  Identities=22%  Similarity=0.349  Sum_probs=147.5

Q ss_pred             cccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhH
Q 023059           71 WFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQ  149 (288)
Q Consensus        71 ~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~e  149 (288)
                      |++++.++|+|.++++++. .+.|+||+++.+++++.|||  .++..++.++ .++.+ .+.+.+++.+|+++|+++++|
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI--~dp~~~~~~v-~~~~~-~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRV--VDPVKAVTQV-KNYIM-ATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEE--SCHHHHHHSS-SCHHH-HHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEE--CCHHHHHHHh-cCHHH-HHHHHHHHHHHHHHccCCHHH
Confidence            5689999999999999976 78999999999999999995  6677777654 35544 478999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023059          150 LITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEA  229 (288)
Q Consensus       150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea  229 (288)
                      ++++|++|++.+++.+++.+++|||+|++|.|++|+||+++.++|++++              .|++++++++++|+|++
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~  143 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER  143 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999997543              26677888999999999


Q ss_pred             HHHHHHHHHh---hcCchhhHHHHHHHHHHHHH
Q 023059          230 TSAQLIGQAI---AKNPAFITLRKIEAAREIAQ  259 (288)
Q Consensus       230 ~a~~~~~~al---~~~p~~~~~~~le~~~~i~~  259 (288)
                      +|++++++|.   ..+|.++++|+||++.+++.
T Consensus       144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~  176 (188)
T 3bk6_A          144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG  176 (188)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence            9999999884   56999999999999999876

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.90  E-value=7.7e-24  Score=166.04  Aligned_cols=128  Identities=16%  Similarity=0.224  Sum_probs=100.1

Q ss_pred             eecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhC
Q 023059           67 LMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQY  145 (288)
Q Consensus        67 ~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~  145 (288)
                      +..||++++.++|+|.+.++++. ++.|+|+..+.++++++||  +.|+.+++.++  +..+..+...+++++|+++|++
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yr--I~Dp~~~~~~v--~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYR--VQNATLAVANI--TNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEE--ESCHHHHHHSS--SCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEE--EeehHHhHhhh--hhHHHHHHHHHHHHHHHHhccc
Confidence            67899999999999999999976 6999999999999999999  57888887754  3344558999999999999999


Q ss_pred             CHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 023059          146 NASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ  198 (288)
Q Consensus       146 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~  198 (288)
                      ++++++++|++|.+.+++.+++.+++|||+|.+|.|++++||+++.++|++++
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~  131 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA  131 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999996554

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.83  E-value=2e-21  Score=154.11  Aligned_cols=129  Identities=8%  Similarity=0.096  Sum_probs=111.3

Q ss_pred             cccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecC--CCCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 023059           71 WFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPV--ADQLPTIYRTL-G--ENYNERVLPSIIHETLKAVVAQ  144 (288)
Q Consensus        71 ~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~--~~~~~~~~~~~-g--~~~~~~~l~~~v~~~lr~~i~~  144 (288)
                      |++++.++|+|.++++++. ++.|+|+.++.+|++++|||.  |..+.....++ +  .+..+..+.+.+++.+|+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5689999999999999987 589999999999999999983  33333334443 2  2345566889999999999999


Q ss_pred             CCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHH
Q 023059          145 YNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQV  199 (288)
Q Consensus       145 ~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~  199 (288)
                      ++++|++++|++|.+.+++.++..+++|||+|.+|.|+||++|+++.++|++++.
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~  137 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQT  137 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999975543

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.72  E-value=1.8e-18  Score=131.61  Aligned_cols=110  Identities=13%  Similarity=0.188  Sum_probs=98.2

Q ss_pred             EEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhH
Q 023059           76 VIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR  154 (288)
Q Consensus        76 ~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R  154 (288)
                      +++|+|.+.++++. .+.|+|+.++.+++++.|||  .++..++.+++ ++. ..+.+.+++++|+++|+++++|++++|
T Consensus         3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI--~dp~~~~~~v~-~~~-~~l~~~~~~~lR~vig~~~l~ei~~~R   78 (113)
T 2rpb_A            3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQV--IDPVKAVYNVS-DFL-MAIVKLAQTNLRAIIGEMELDETLSGR   78 (113)
T ss_dssp             SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEE--SCTTTCTTTTT-HHH-HHHHHHHHHHHHHHHTSCCTTHHHHCH
T ss_pred             eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEE--CCHHHHHHhcC-CHH-HHHHHHHHHHHHHHHhcCcHHHHHhCH
Confidence            35789999999876 79999999999999999995  56777776654 443 458999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHH
Q 023059          155 ETVSREIRKILTERAAYFNIALDDVSITSLTFGKE  189 (288)
Q Consensus       155 ~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~  189 (288)
                      ++|++.+++.+++.+++|||+|.+|.|++++||++
T Consensus        79 ~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           79 DIINARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            99999999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.45  E-value=1.3e-05  Score=77.54  Aligned_cols=149  Identities=10%  Similarity=0.048  Sum_probs=98.7

Q ss_pred             EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeee------e---e---------eeeeeccccCCccEE
Q 023059           38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRA------R---P---------NLVESTTGSHDLQMV   99 (288)
Q Consensus        38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~------~---~---------~~~~~~~~TkD~~~v   99 (288)
                      .+.||.+...-+++--.+..+.+.+|-+++.-|- +.+..+++.-      .   .         ..-...+-|+|...+
T Consensus       459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL  537 (861)
T 2zuo_A          459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL  537 (861)
T ss_dssp             EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred             EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence            4578888877777511233556788988887775 4444444321      1   1         111135789999999


Q ss_pred             EEEEEEEEecCC---CCHHHHHHHhC-ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHH-HHH-----------
Q 023059          100 KIGLRVLTRPVA---DQLPTIYRTLG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE-IRK-----------  163 (288)
Q Consensus       100 ~v~~~v~y~v~~---~~~~~~~~~~g-~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~-v~~-----------  163 (288)
                      .+..+..|..+.   .++.+.-.-|. +|+... +=..+.|-+|..+++.++++++.+-..|-.. +..           
T Consensus       538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd-~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~  616 (861)
T 2zuo_A          538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGD-ACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDG  616 (861)
T ss_dssp             EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             EEEEEEEEEEeccCCCChhhhhhhccCCchHHH-HHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccc
Confidence            999999998744   44444433333 566654 5788999999999999999999765555322 211           


Q ss_pred             ----HHHH--HHhcCCeEEEEEEeecccCCH
Q 023059          164 ----ILTE--RAAYFNIALDDVSITSLTFGK  188 (288)
Q Consensus       164 ----~l~~--~l~~~Gi~v~~v~I~~i~~p~  188 (288)
                          ..++  .+...|+.|++|.|+++.+-+
T Consensus       617 ~~~~~~~~~~~F~~N~lvitsVDvqsvEpvD  647 (861)
T 2zuo_A          617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVD  647 (861)
T ss_dssp             ----CCCSCEECTTTCEEEEEEEEEEEEESS
T ss_pred             ccccCcccceEEccCCeEEEEEeeeeecccC
Confidence                1111  256889999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	2e-08

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 9/82 (10%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 123 ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSIT 182
           ++    VL   +   L++++      Q+   R+  ++ +R++         I +   +I 
Sbjct: 62  QDIKNVVLQ-TLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIK 120

Query: 183 SLTFGKEFTFAIEAKQVAAQEA 204
            +    ++  ++   Q +   +
Sbjct: 121 DVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.79

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.5e-20  Score=146.01  Aligned_cols=127  Identities=7%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             ceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHH--HHHHh-C--ccccccccchHHHHHHHHHHhhCCH
Q 023059           74 RPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPT--IYRTL-G--ENYNERVLPSIIHETLKAVVAQYNA  147 (288)
Q Consensus        74 ~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~--~~~~~-g--~~~~~~~l~~~v~~~lr~~i~~~~~  147 (288)
                      +++++|++.++++++. +++|+||+++.+++++.|||..+....  ....+ +  .+..+..+++.+++++|++++++++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            5678999999999987 589999999999999999984333221  11222 2  3445567899999999999999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHH
Q 023059          148 SQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVA  200 (288)
Q Consensus       148 ~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a  200 (288)
                      ++++++|++|.+.+++.+++.+++||++|.++.|+||++|++|.++|++++.|
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999877654