Citrus Sinensis ID: 023067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGGY
Secondary Structure (PSIPRED)
ccccEEccccccccccccccEEEccccccHHHHHHHHHHHHcccccEEEEEEccccHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccEEcccccccccEEEEEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccHHHEccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccHcccccEEEEEEEEEEEEEEccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdryqkvekpkpespineneiRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNiftlspisslslSSCLLAIYNQLAICIIeqkripqlhqdtaissvsitdtwepieeglvpvemtRHVSMISITFStrelnknspgyqsphnaeqpkLQYRYQQQQqqqnqpprqgripytavnnaynaaneesygrgrgrgrgrgrgrgrsyarggygnyqeydgysnwgrgggrgrgwgyrgtgyergrggggrgyargrgrtggrsrggggy
Flexible Loop (DISEMBL)
mdryqkvekpkpespineneirittqGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAIssvsitdtwepIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAynaaneesygrgrgrgrgrgrgrgrsyarggygnyqeydgysnwgrgggrgrGWGYRGtgyergrggggrgyargrgrtggrsrggggy
Low Complexity Region (SEG)
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTlspisslslsscllAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLqyryqqqqqqqnqpprqGRIPYTavnnaynaanEESygrgrgrgrgrgrgrgrsyarggygNYQEYDGYSNWgrgggrgrgwgyrgtgyergrggggrgyargrgrtggrsrggggy
Disordered region (IsUnstruct)
********************IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITF*********************************************************************************GYGNYQEYDGYSNWGRGGGRGRGWGYRGTGY****************************
Disordered Region (DISOPRED)
*DRYQKV*************IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTREL***************************************************************************************************************************************
Disordered Region (DISEMBL)
**************PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQP******************QGRIPYTAVNNAYNAANEES*****************SYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERG*************************
Disordered Region (DISPRO)
**RYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPK*********************************************************RGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRG************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
356566431	305	PREDICTED: uncharacterized protein LOC10	0.548	0.518	0.634	1e-62
357505379	364	Ribonuclease P protein subunit p25 [Medi	0.552	0.436	0.629	6e-61
359480099	243	PREDICTED: alba-like protein C9orf23 hom	0.559	0.662	0.629	1e-60
297744302	244	unnamed protein product [Vitis vinifera]	0.559	0.659	0.629	1e-60
449468624	287	PREDICTED: uncharacterized protein LOC10	0.475	0.477	0.687	3e-57
449529240	230	PREDICTED: ribonuclease P protein subuni	0.475	0.595	0.682	9e-57
6729010	485	unknown protein [Arabidopsis thaliana]	0.701	0.416	0.492	2e-55
255560197	254	protein with unknown function [Ricinus c	0.680	0.771	0.520	5e-53
297833478	413	predicted protein [Arabidopsis lyrata su	0.524	0.365	0.574	5e-53
238479682	405	Alba DNA/RNA-binding protein [Arabidopsi	0.524	0.372	0.574	1e-52

>gi|356566431|ref|XP_003551435.1| PREDICTED: uncharacterized protein LOC100804648 [Glycine max]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/208 (63%), Positives = 142/208 (68%), Gaps = 50/208 (24%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVE+PKPESPINENEIRITTQGAIRNYITYAT+LLQEKHA+EIVLKAMGQAI+KT
Sbjct: 1   MDRYQKVERPKPESPINENEIRITTQGAIRNYITYATSLLQEKHAREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEI+K                                    KRIP+LHQDT ISSVS
Sbjct: 61  VAIAEILK------------------------------------KRIPKLHQDTGISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           I DTWEPIEEGLVPVEMTRHVSMISIT STRELNKNSPGYQ+P N EQPK    YQQQ  
Sbjct: 85  IVDTWEPIEEGLVPVEMTRHVSMISITLSTRELNKNSPGYQAPSNVEQPKPHSNYQQQSI 144

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESY 208
           +  Q               +NA NE+ Y
Sbjct: 145 KPAQ--------------VHNAVNEDLY 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505379|ref|XP_003622978.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355497993|gb|AES79196.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 139/208 (66%), Gaps = 49/208 (23%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPE+PINENEIRITTQGAIRNYITYAT+LLQEK AKEIVLKAMGQAI+KT
Sbjct: 1   MDRYQKVEKPKPETPINENEIRITTQGAIRNYITYATSLLQEKQAKEIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEI+K                                    KRI  LHQDTAISSVS
Sbjct: 61  VAIAEILK------------------------------------KRISPLHQDTAISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEPIEEGLVPVEMTRHVSMISIT ST ELN NSPGYQ+P  AEQ K    YQQQ  
Sbjct: 85  ITDVWEPIEEGLVPVEMTRHVSMISITLSTGELNTNSPGYQAPSTAEQSKPHSNYQQQ-- 142

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESY 208
                      P     ++YNA NE+SY
Sbjct: 143 -----------PLKPAQDSYNAVNEDSY 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480099|ref|XP_002266289.2| PREDICTED: alba-like protein C9orf23 homolog [Vitis vinifera]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 143/208 (68%), Gaps = 47/208 (22%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+VEKP+PES INENEIRIT QG IRNYI+YA+TLLQEK  +EIVLKAMGQAI+KT
Sbjct: 1   MDRYQRVEKPRPESTINENEIRITAQGVIRNYISYASTLLQEKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEIIK                                    KRIP+LHQDTAISSVS
Sbjct: 61  VAIAEIIK------------------------------------KRIPRLHQDTAISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEPIEEGLVP+EMTRHVSMISIT STRELNKN PGYQ+P++ EQPK QY YQ Q Q
Sbjct: 85  ITDVWEPIEEGLVPLEMTRHVSMISITLSTRELNKNLPGYQAPYHVEQPKSQYHYQPQNQ 144

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESY 208
                PRQ   P       YNA NE+SY
Sbjct: 145 -----PRQAARP------PYNAVNEDSY 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744302|emb|CBI37272.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/208 (62%), Positives = 143/208 (68%), Gaps = 47/208 (22%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+VEKP+PES INENEIRIT QG IRNYI+YA+TLLQEK  +EIVLKAMGQAI+KT
Sbjct: 1   MDRYQRVEKPRPESTINENEIRITAQGVIRNYISYASTLLQEKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEIIK                                    KRIP+LHQDTAISSVS
Sbjct: 61  VAIAEIIK------------------------------------KRIPRLHQDTAISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEPIEEGLVP+EMTRHVSMISIT STRELNKN PGYQ+P++ EQPK QY YQ Q Q
Sbjct: 85  ITDVWEPIEEGLVPLEMTRHVSMISITLSTRELNKNLPGYQAPYHVEQPKSQYHYQPQNQ 144

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESY 208
                PRQ   P       YNA NE+SY
Sbjct: 145 -----PRQAARP------PYNAVNEDSY 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468624|ref|XP_004152021.1| PREDICTED: uncharacterized protein LOC101208913 [Cucumis sativus] gi|449531416|ref|XP_004172682.1| PREDICTED: uncharacterized protein LOC101224898 [Cucumis sativus]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 127/173 (73%), Gaps = 36/173 (20%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYA+TLLQEK  +EIVLKAMGQAI+K 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEI+K                                    KRI +LHQ+TAISSVS
Sbjct: 61  VAIAEILK------------------------------------KRISRLHQETAISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQY 173
           ITD WEPIEEGLVPVEMTRHVSMISIT S RELNKNSPGYQ+PH  EQPK QY
Sbjct: 85  ITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKNSPGYQAPHFVEQPKQQY 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529240|ref|XP_004171609.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like, partial [Cucumis sativus]

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 127/173 (73%), Gaps = 36/173 (20%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYA+TLLQEK  +EIVLKAMGQAI+K 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKCVREIVLKAMGQAISKA 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAIAEI+K                                    KRI +LHQ+TAISSVS
Sbjct: 61  VAIAEILK------------------------------------KRISRLHQETAISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQY 173
           ITD WEPIEEGLVP+EMTRHVSMISIT S RELNKNSPGYQ+PH  EQPK QY
Sbjct: 85  ITDVWEPIEEGLVPMEMTRHVSMISITLSNRELNKNSPGYQAPHFVEQPKQQY 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6729010|gb|AAF27007.1|AC016827_18 unknown protein [Arabidopsis thaliana]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/252 (49%), Positives = 148/252 (58%), Gaps = 50/252 (19%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAI+EI+K                                     +IP LHQD AISS+S
Sbjct: 61  VAISEILK------------------------------------NKIPGLHQDIAISSIS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEP EEGL PVE+TRHVSMISIT S  ELNK+SPGYQ+P  ++Q K QY+ QQ   
Sbjct: 85  ITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKDSPGYQAPAQSDQSKPQYQPQQ--- 141

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGY 240
                 RQ R+PY    NAY   N  ++            G G   A G  G  +E D  
Sbjct: 142 -----GRQARLPY----NAYGEGNALNFLDDLNLSMLIRMGEGEVVAEGEAG--EEVDME 190

Query: 241 SNWGRGGGRGRG 252
           +  G    + +G
Sbjct: 191 TTKGVMKEKTKG 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560197|ref|XP_002521116.1| protein with unknown function [Ricinus communis] gi|223539685|gb|EEF41267.1| protein with unknown function [Ricinus communis]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 127/244 (52%), Positives = 148/244 (60%), Gaps = 48/244 (19%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRY +VEKPKPESPINENEIRIT+ G +RNYI+YAT+LLQEKHAKEIVLKAMGQAI+KT
Sbjct: 1   MDRYTRVEKPKPESPINENEIRITSGGPVRNYISYATSLLQEKHAKEIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           V+IAE IK                                    ++ P+L+QDT ISSVS
Sbjct: 61  VSIAEGIK------------------------------------RKNPRLYQDTVISSVS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEPIEEGL+PVE TR VSMI+IT S RELN NSPGYQ+P + EQPK QY+ Q    
Sbjct: 85  ITDVWEPIEEGLLPVEQTRQVSMITITLSFRELNINSPGYQAPQSVEQPKEQYQPQ---- 140

Query: 181 QQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGY-GNYQEYDG 239
                PRQ R PY A  +  ++                    G    +G Y GNYQ+  G
Sbjct: 141 -----PRQSRGPYNAGRD--DSYGRGLGRGRGRGRGFGRGRYGYGNYQGNYQGNYQDNAG 193

Query: 240 YSNW 243
           YSNW
Sbjct: 194 YSNW 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833478|ref|XP_002884621.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330461|gb|EFH60880.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 130/195 (66%), Gaps = 44/195 (22%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRY++V KPKPESPINENEIRIT++G IRNYI+YATTLLQEK+ K+IVLKAMGQAI+KT
Sbjct: 1   MDRYERVVKPKPESPINENEIRITSKGLIRNYISYATTLLQEKNVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAI+EI+K                                     +IP LHQD AISS+S
Sbjct: 61  VAISEILK------------------------------------NKIPGLHQDIAISSMS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEP EEGL PVE+TRHVSMISIT S  ELNK+SPGYQ+P   +Q K QY+ QQ   
Sbjct: 85  ITDVWEPTEEGLFPVELTRHVSMISITLSLTELNKDSPGYQAPAQTDQSKPQYQPQQG-- 142

Query: 181 QQNQPPRQGRIPYTA 195
                 RQ R+PY A
Sbjct: 143 ------RQARLPYNA 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479682|ref|NP_187359.2| Alba DNA/RNA-binding protein [Arabidopsis thaliana] gi|332640970|gb|AEE74491.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 130/195 (66%), Gaps = 44/195 (22%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVS 120
           VAI+EI+K                                     +IP LHQD AISS+S
Sbjct: 61  VAISEILK------------------------------------NKIPGLHQDIAISSIS 84

Query: 121 ITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQ 180
           ITD WEP EEGL PVE+TRHVSMISIT S  ELNK+SPGYQ+P  ++Q K QY+ QQ   
Sbjct: 85  ITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKDSPGYQAPAQSDQSKPQYQPQQG-- 142

Query: 181 QQNQPPRQGRIPYTA 195
                 RQ R+PY A
Sbjct: 143 ------RQARLPYNA 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.236	0.167	0.808	9.7e-25
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.236	0.194	0.676	3.5e-20
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.236	0.215	0.647	1.2e-19
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.215	0.380	0.375	5.7e-13
UNIPROTKB|E2RC74	163	C11H9orf23 "Uncharacterized pr	0.215	0.380	0.375	5.7e-13
UNIPROTKB|E1C3A2	170	CZH9orf23 "Uncharacterized pro	0.222	0.376	0.358	3.5e-12
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.215	0.380	0.359	6.7e-12
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.215	0.380	0.359	6.7e-12
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.201	0.157	0.431	3.2e-11
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.215	0.380	0.343	1.3e-10

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 55/68 (80%), Positives = 64/68 (94%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VAIAEIIK 68
             VAI+EI+K
Sbjct:    61 VAISEILK 68

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/68 (67%), Positives = 57/68 (83%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MD+YQ+V KPK ++PI+ NEIRIT+QG  RNYITYA TLLQ+K + E+V KAMG+AINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VAIAEIIK 68
             V I E+IK
Sbjct:    61 VTIVELIK 68

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 44/68 (64%), Positives = 55/68 (80%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MD+YQ+VEKPK ++PI ENEIRIT+ G  RNYITYA  LLQE  + E++ KAMG+AINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VAIAEIIK 68
             V I E+IK
Sbjct:    61 VTIVELIK 68

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query:   102 IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPG 159
             I ++R+P LHQ T +  +   D+W PI  + GL P+ + RHV  + +  S   L+ N  G
Sbjct:    73 IVKRRVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECG 132

Query:   160 YQSP 163
             YQ P
Sbjct:   133 YQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RC74 C11H9orf23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 24/64 (37%), Positives = 36/64 (56%)

Query:   102 IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPG 159
             I ++R+P LHQ T +  +   D+W PI  + GL P+ + RHV  + +  S   L+ N  G
Sbjct:    73 IVKRRVPGLHQLTKLRFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECG 132

Query:   160 YQSP 163
             YQ P
Sbjct:   133 YQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C3A2 CZH9orf23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query:   100 CI-IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKN 156
             C+ I ++R+ +LHQ T +    I + WEPI  E GL  + + R++  I +  S   L+  
Sbjct:    70 CVEIMKRRLKELHQITKVLFKQIEEIWEPIVPEAGLDALTVKRNIPAICVLLSKDALDPQ 129

Query:   157 SPGYQSP 163
              PGYQ+P
Sbjct:   130 EPGYQAP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query:   102 IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPG 159
             I ++R+P LHQ T +  +   D+W P   + GL P+ + RHV  + +  S   L+ N  G
Sbjct:    73 IVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECG 132

Query:   160 YQSP 163
             YQ P
Sbjct:   133 YQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 107 (42.7 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query:   102 IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPG 159
             I ++R+P LHQ T +  +   D+W P   + GL P+ + RHV  + +  S   L+ N  G
Sbjct:    73 IVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECG 132

Query:   160 YQSP 163
             YQ P
Sbjct:   133 YQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query:   106 RIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSP 163
             R+P LHQ T I +  I   + P EEGL  VE+++  + I IT S   L+  +PGYQ P
Sbjct:    70 RVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLDTTNPGYQPP 127

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query:   102 IEQKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPG 159
             I ++R+P LHQ T +  +   D+W P   + GL P+ + RHV  + +  S   L+ +  G
Sbjct:    73 IVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECG 132

Query:   160 YQSP 163
             YQ P
Sbjct:   133 YQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001268001 SubName- Full=Chromosome undetermined scaffold_114, whole genome shotgun sequence; (244 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam01918	67	pfam01918, Alba, Alba	1e-14
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	8e-08
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	6e-07
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-06
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	6e-06
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	3e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	8e-05
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	7e-04
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	9e-04
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	0.002
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	0.003
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	0.003
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	0.004

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
          N I ++++  I NY+  A  LL+   A E+VLK +G+AI+K V++AEI+K
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILK 50

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 32/72 (44%), Positives = 32/72 (44%), Gaps = 19/72 (26%)

Query: 208 YGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGG 267
            G G GRG GRG G G     GG G           GRGGGRGRG         RG GGG
Sbjct: 4   GGFGGGRGGGRGGGGGGGRGGGGRGG----------GRGGGRGRG---------RGGGGG 44

Query: 268 GRGYARGRGRTG 279
           GRG   G G   
Sbjct: 45  GRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 19/75 (25%)

Query: 209 GRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGG 268
           G G G G GRG GRG     G  G           GRGGGRG G         RGRG GG
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGG----------GRGGGRGGG---------RGRGRGG 41

Query: 269 RGYARGRGRTGGRSR 283
            G  RG G  GG  +
Sbjct: 42  GGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 25/44 (56%), Positives = 25/44 (56%)

Query: 244 GRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGG 287
             GG  G   G RG G   GRGGGGRG  RG GR  GR  GGGG
Sbjct: 2   MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGG 45

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 19/75 (25%)

Query: 211 GRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRG 270
           G G G G GRG GR                   G GGG GRG G RG G   GRG G  G
Sbjct: 1   GMGGGFGGGRGGGR-------------------GGGGGGGRGGGGRGGGRGGGRGRGRGG 41

Query: 271 YARGRGRTGGRSRGG 285
              GRG  GG   G 
Sbjct: 42  GGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 26/44 (59%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 244 GRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGG 287
           GRGGGRG   G  G G   G  GGGRG  RGRGR GG    GGG
Sbjct: 9   GRGGGRG---GGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49

Length = 293

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 15 PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
             EN + +  +  + NY+    T   +  AKE+V+KA G+AI+K V +AEI++
Sbjct: 1  MAEENVVLVGKKPVM-NYVLAVLTQFNQG-AKEVVIKARGRAISKAVDVAEIVR 52

Length = 91

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
          EN + +  +  + NY+    T   E  A E+++KA G+AI+K V +AEI++
Sbjct: 4  ENVVLVGKKPVM-NYVLAVLTQFNEG-ADEVIIKARGRAISKAVDVAEIVR 52

Length = 91

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 3/128 (2%)

Query: 161 QSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGR 220
                AE+ + + R +++++   +  +                + +   R   R +G  R
Sbjct: 156 ARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215

Query: 221 GRGRSYARGGY-GNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTG 279
                   G   G  +  D     G      RG      G  RG   G R   R R R G
Sbjct: 216 EERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRF--RDRDRRG 273

Query: 280 GRSRGGGG 287
            R   GG 
Sbjct: 274 RRGGDGGN 281

Length = 672

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 157 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAAN--EESYGRGRGR 214
             G        QP+ Q R Q + +Q +QPPRQ         N  N  N  +        R
Sbjct: 450 GRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQ-------QNRSNQNNQRQSQGPNQGPR 502

Query: 215 GRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARG 274
           G+G    R R+Y    YG  Q      N  R  G+GR    +     RG      G  RG
Sbjct: 503 GQGGYNLRPRTYQPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRG 562

Query: 275 RGRTGGRSRGGGG 287
           +G  G ++R    
Sbjct: 563 QGGRGNQNRNQRS 575

Length = 582

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 29/73 (39%), Positives = 29/73 (39%), Gaps = 20/73 (27%)

Query: 215 GRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARG 274
           G G G G GR                   G G G G G G RG G   G  GGGRG  RG
Sbjct: 1   GMGGGFGGGR-------------------GGGRGGGGG-GGRGGGGRGGGRGGGRGRGRG 40

Query: 275 RGRTGGRSRGGGG 287
            G  G    GGGG
Sbjct: 41  GGGGGRGGGGGGG 53

Length = 293

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 13/75 (17%)

Query: 202 AANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYE 261
            AN +       + R     +      G   +            G GR RG G       
Sbjct: 480 PANGKGNNVPAKKSRPSNDQKQYVNKSGEGISK-----VGQSYGGRGRTRGRG------- 527

Query: 262 RGRGGGGRGYARGRG 276
              GGGGRG    RG
Sbjct: 528 -RGGGGGRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 24/47 (51%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 244 GRGGGRGRGWGYRGTGYERGRGGGGRGYARG--RGRTGGRSRGGGGY 288
           GRGG  G G G    GY  G GGGG GY      G  GGR+ GGGG 
Sbjct: 110 GRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGG 156

Length = 182

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 12/79 (15%)

Query: 209 GRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGG 268
           GR +  G GRG+G GR   +G               RG G  +    +       R G  
Sbjct: 390 GRQQRGGGGRGQGGGRGQQQGQPR------------RGEGGAKSASAKPAEKPSRRLGDA 437

Query: 269 RGYARGRGRTGGRSRGGGG 287
           +     + R   R      
Sbjct: 438 KPAGEQQRRRRPRKPAAAQ 456

Length = 456

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 167 EQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSY 226
             P  + R    Q+Q      +G        +    +     GR RGRGRG G GRGR Y
Sbjct: 487 NVPAKKSRPSNDQKQYVNKSGEG-------ISKVGQSYGGR-GRTRGRGRGGGGGRGRGY 538

Query: 227 ARG 229
            RG
Sbjct: 539 NRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 21/74 (28%)

Query: 182 QNQPPRQGRIPYTAVNNAYNAANEESY---GRGRGRGRGRGRGRGRSYARGGYGNYQEYD 238
            N P ++ R P        N + E          GRGR RGRGRG     GG        
Sbjct: 486 NNVPAKKSR-PSNDQKQYVNKSGEGISKVGQSYGGRGRTRGRGRG----GGG-------- 532

Query: 239 GYSNWGRGGGRGRG 252
                GRG G  RG
Sbjct: 533 -----GRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 29 IRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
          + NY+    T L    A E+++KA G+AI++ V +AEI++
Sbjct: 11 VMNYVLAVLTQLNSG-ADEVIIKARGRAISRAVDVAEIVR 49

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.66
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.6
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.49
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.3
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.16
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	97.98
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.45
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	96.6
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	96.54
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	87.04
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	80.07

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-46  Score=325.11  Aligned_cols=129  Identities=48%  Similarity=0.760  Sum_probs=128.1

Q ss_pred             CCCceeccCCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCC
Q 023067            1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSP   80 (288)
Q Consensus         1 md~y~~v~~~~~~~~~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~   80 (288)
                      ||.|+.|-||+|++|++.|||||+.+++|+|||.||+.+|+++..+.|||+|||.||+|||+||||||            
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilK------------   68 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILK------------   68 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHh------------
Confidence            89999999999999999999999999999999999999999999999999999999999999999999            


Q ss_pred             CcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCCCCCCCCCc
Q 023067           81 ISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGY  160 (288)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ld~k~pGY  160 (288)
                                              +|+++|||+|.|++.+|+|+|+|.+|||++++++||||+|+|+||+|+||++.+||
T Consensus        69 ------------------------rRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~Gy  124 (179)
T KOG2567|consen   69 ------------------------RRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGY  124 (179)
T ss_pred             ------------------------hhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCc
Confidence                                    99999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 023067          161 QSPHN  165 (288)
Q Consensus       161 Q~P~~  165 (288)
                      |+|.+
T Consensus       125 Q~P~~  129 (179)
T KOG2567|consen  125 QPPNP  129 (179)
T ss_pred             cCCCC
Confidence            99998

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.66  E-value=7e-16  Score=123.62  Aligned_cols=87  Identities=32%  Similarity=0.486  Sum_probs=72.4

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ   96 (288)
Q Consensus        17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~   96 (288)
                      ++|+|+|+.+ .++|||.+++.+|+ ++.++|+|||+|+||+|||+||||||                            
T Consensus         3 ~en~i~Ig~k-pvmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk----------------------------   52 (91)
T PRK04015          3 EENVVLVGKK-PVMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVR----------------------------   52 (91)
T ss_pred             CCCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHH----------------------------
Confidence            5899999997 68899999999999 58999999999999999999999999                            


Q ss_pred             hhHhhhhhcccCcceeeee--EEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067           97 LAICIIEQKRIPQLHQDTA--ISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR  151 (288)
Q Consensus        97 ~~~~~~~~~ri~gLhQ~t~--i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd  151 (288)
                              +|+...+++.+  |+|.++.+     ++|     .+++||.|.|+|++.
T Consensus        53 --------~r~~~~v~v~~I~i~se~i~~-----~~g-----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         53 --------NRFLPDVEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIVLEKK   91 (91)
T ss_pred             --------HhccCCeEEEEEEeccEEeec-----CCC-----cEEEEEEEEEEEecC
Confidence                    67655588877  55544433     233     467999999999863

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.60  E-value=4.1e-15  Score=111.49  Aligned_cols=64  Identities=39%  Similarity=0.627  Sum_probs=57.3

Q ss_pred             CeEEEcCCCchhHHHHHHHHHH---hhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067           19 NEIRITTQGAIRNYITYATTLL---QEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN   95 (288)
Q Consensus        19 NeIRVt~~~~irnyV~~A~~lL---~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~   95 (288)
                      |+|+|+.++++++||.+|+++|   ++.+.++|+|+|+|+||+|||+||||||                           
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K---------------------------   53 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILK---------------------------   53 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHH---------------------------
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHH---------------------------
Confidence            7999999999999999999999   4457899999999999999999999999                           


Q ss_pred             hhhHhhhhhccc-CcceeeeeEEE
Q 023067           96 QLAICIIEQKRI-PQLHQDTAISS  118 (288)
Q Consensus        96 ~~~~~~~~~~ri-~gLhQ~t~i~s  118 (288)
                               +++ ++|||++.+.+
T Consensus        54 ---------~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen   54 ---------RRFGEGLYQVNKITS   68 (70)
T ss_dssp             ---------HHTSTTTEEEEEEEE
T ss_pred             ---------HhhcCCCEEEEEEec
Confidence                     777 49999998875

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>TIGR00285 DNA-binding protein Alba

Probab=99.49  E-value=3e-13  Score=107.70  Aligned_cols=85  Identities=32%  Similarity=0.452  Sum_probs=68.8

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      +|.|+|..+ .++|||..++.+|++ +.++|+|||+|+||+|||+||||||                             
T Consensus         1 e~~i~vG~K-PvmnYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik-----------------------------   49 (87)
T TIGR00285         1 ENVVYIGNK-PVMNYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVR-----------------------------   49 (87)
T ss_pred             CCEEEEcCC-cHHHHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHH-----------------------------
Confidence            489999998 599999999999985 7899999999999999999999999                             


Q ss_pred             hHhhhhhcccCcceeeeeE--EEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           98 AICIIEQKRIPQLHQDTAI--SSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        98 ~~~~~~~~ri~gLhQ~t~i--~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                             +|+...++..+|  +|.++.     -++|     .+++||.|+|.|.+
T Consensus        50 -------~r~~~~v~v~~I~i~te~~~-----~~~G-----~~~~VStIEI~l~~   87 (87)
T TIGR00285        50 -------NRFIPDIKIKKIKIGTEEIK-----SEQG-----REVNVSTIEIVLAK   87 (87)
T ss_pred             -------HhccCCceEEEEEeccEEee-----cCCC-----ceeeEEEEEEEEeC
Confidence                   777666777666  443332     1233     35689999999974

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.30  E-value=3.2e-11  Score=96.15  Aligned_cols=50  Identities=36%  Similarity=0.594  Sum_probs=47.0

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHH
Q 023067           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK   68 (288)
Q Consensus        17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK   68 (288)
                      .+|.|+|.++ .+.|||-.++.+|++ +.++|+|||.|+||+|||.+|||++
T Consensus         3 ~envV~vG~K-PvmNYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivR   52 (91)
T COG1581           3 EENVVLVGKK-PVMNYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVR   52 (91)
T ss_pred             CccEEEEcCc-chHHHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHH
Confidence            4699999988 599999999999996 6999999999999999999999999

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.16  E-value=1.6e-10  Score=99.43  Aligned_cols=93  Identities=22%  Similarity=0.345  Sum_probs=65.9

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcC-------------------------------CCEEEEEeccHhHHHHHHHHHH
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKH-------------------------------AKEIVLKAMGQAINKTVAIAEI   66 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~-------------------------------~~~IvIkg~G~AIsKAV~vAEI   66 (288)
                      ++.|+|+.++.|.++|..+.+||..-.                               .++|+|||||+||+||+.||.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            678999999999999999999997411                               1699999999999999999999


Q ss_pred             HHHhhhhhccccCCCcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEecccccccc-----------------
Q 023067           67 IKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIE-----------------  129 (288)
Q Consensus        67 LK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~e-----------------  129 (288)
                      |+                                    +. .++--.+.++||++.|++++.+                 
T Consensus        83 Fq------------------------------------~~-~~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~  125 (144)
T PF12328_consen   83 FQ------------------------------------RK-KGYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDD  125 (144)
T ss_dssp             HH------------------------------------HT-T---EEEEEEEEEEEEE----------------------
T ss_pred             Hh------------------------------------hc-CCeEEEEEeceEEEEEEEeeccccccccccccccccCcc
Confidence            98                                    22 2777889999999999998763                 


Q ss_pred             -CCCcceeEeeeeeeEEEE
Q 023067          130 -EGLVPVEMTRHVSMISIT  147 (288)
Q Consensus       130 -egl~~~~v~R~VsaI~It  147 (288)
                       +..++...+|.||+|+|.
T Consensus       126 ~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen  126 DEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             -------EEEEEEEEEEEE
T ss_pred             ccccCccceEEeeEEEEEC
Confidence             345678999999999985

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=97.98  E-value=3.1e-05  Score=75.62  Aligned_cols=17  Identities=65%  Similarity=1.107  Sum_probs=7.6

Q ss_pred             ccccCcc-ccCCCCCCcc
Q 023067          219 GRGRGRS-YARGGYGNYQ  235 (288)
Q Consensus       219 grGrGrg-~grgg~g~~~  235 (288)
                      |||+||| +|+||.++|.
T Consensus       368 GrGgGRGggG~GGGggyq  385 (465)
T KOG3973|consen  368 GRGGGRGGGGRGGGGGYQ  385 (465)
T ss_pred             CCCCCCCCCCCCCCCCCc
Confidence            3444443 4455555443

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.45  E-value=0.00053  Score=73.87  Aligned_cols=19  Identities=21%  Similarity=-0.013  Sum_probs=9.8

Q ss_pred             ccccCCCcccchhhhHHHH
Q 023067           75 IFTLSPISSLSLSSCLLAI   93 (288)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~   93 (288)
                      |=+=+||--|-++--||||
T Consensus      1033 M~fPsPFFVFGEKIRTRAI 1051 (1282)
T KOG0921|consen 1033 MDFPSPFFVFGEKIRTRAI 1051 (1282)
T ss_pred             cCCCCceeeechhhhhhee
Confidence            3344566555555444444

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=96.60  E-value=0.0096  Score=58.67  Aligned_cols=13  Identities=54%  Similarity=0.882  Sum_probs=5.8

Q ss_pred             CCCccc-cCccccC
Q 023067          216 RGRGRG-RGRSYAR  228 (288)
Q Consensus       216 ~grgrG-rGrg~gr  228 (288)
                      +|+||| +|+|.|+
T Consensus       369 rGgGRGggG~GGGg  382 (465)
T KOG3973|consen  369 RGGGRGGGGRGGGG  382 (465)
T ss_pred             CCCCCCCCCCCCCC
Confidence            344444 4554443

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=96.54  E-value=0.011  Score=64.26  Aligned_cols=21  Identities=57%  Similarity=0.889  Sum_probs=9.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 023067          261 ERGRGGGGRGYARGRGRTGGR  281 (288)
Q Consensus       261 ~~grgg~grg~~rg~gr~~~~  281 (288)
                      .+|+||-|||++||++.+++.
T Consensus      1250 yrgsGGfgrgggrgagggGgf 1270 (1282)
T KOG0921|consen 1250 YRGSGGFGRGGGRGAGGGGGF 1270 (1282)
T ss_pred             ccCCCCcCCCCCCCCCCCCCC
Confidence            344444444444444444443

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=87.04  E-value=4  Score=37.54  Aligned_cols=33  Identities=18%  Similarity=0.121  Sum_probs=18.5

Q ss_pred             EEEEeeCC-CCCCCCCCccCCCCCCcchhhhHHH
Q 023067          144 ISITFSTR-ELNKNSPGYQSPHNAEQPKLQYRYQ  176 (288)
Q Consensus       144 I~ItLSkd-~ld~k~pGYQ~P~~~dqvk~~~~~~  176 (288)
                      ++|+|+-- .-+.-.++=+-+++.+.+-|...++
T Consensus       106 fsIK~~dgv~assfk~g~k~fi~p~KllPl~RFL  139 (215)
T KOG3262|consen  106 FSIKPSDGVQASSFKPGDKLFIDPDKLLPLDRFL  139 (215)
T ss_pred             EEEecCCCceeecccCCCeEEecccccCcHhhcC
Confidence            44554431 1224445556677777777777776

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=80.07  E-value=0.55  Score=48.85  Aligned_cols=6  Identities=50%  Similarity=0.551  Sum_probs=1.3

Q ss_pred             EEeeCC
Q 023067          146 ITFSTR  151 (288)
Q Consensus       146 ItLSkd  151 (288)
                      |+||-.
T Consensus       457 itlSWk  462 (556)
T PF05918_consen  457 ITLSWK  462 (556)
T ss_dssp             ---TTS
T ss_pred             cceeee
Confidence            455533

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.89
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.87
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.86
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.85
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.73
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.73
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.58
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.56
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.16
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	90.53
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	80.47

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.89  E-value=3.2e-23  Score=167.50  Aligned_cols=93  Identities=32%  Similarity=0.456  Sum_probs=85.7

Q ss_pred             CCeEEEcCCCchhHHHHHHH-HHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067           18 ENEIRITTQGAIRNYITYAT-TLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ   96 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~-~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~   96 (288)
                      +|+|||++++. +|||.+|+ .+|+ +++++|+|||+|+||+|||+||||||                            
T Consensus         6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk----------------------------   55 (102)
T 2h9u_A            6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVR----------------------------   55 (102)
T ss_dssp             CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred             CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHH----------------------------
Confidence            69999999987 89999999 9998 57999999999999999999999999                            


Q ss_pred             hhHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCCCC
Q 023067           97 LAICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELN  154 (288)
Q Consensus        97 ~~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ld  154 (288)
                              +|+ ++|| |.++|+|+++.|.|+   +|+   ..+|+||+|+|+|+++|+.
T Consensus        56 --------~r~~~gl~~q~i~i~s~~i~d~~e---~g~---~~~r~vS~IeI~Lsk~~~~  101 (102)
T 2h9u_A           56 --------KRFAKNIEIKDIKIDSQEIEVQTP---EGQ---TRTRRVSSIEICLEKAGES  101 (102)
T ss_dssp             --------HHTTTTEEEEEEEEEEEEEEEECT---TSC---EEEEEEEEEEEEEEECSSC
T ss_pred             --------HhccCCceEEEEEEeeEEEecccc---CCc---cceeEeeeEEEEEEccCCC
Confidence                    888 8999 999999999999865   565   3899999999999998863

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.87  E-value=8.3e-22  Score=155.59  Aligned_cols=87  Identities=30%  Similarity=0.537  Sum_probs=78.4

Q ss_pred             CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067           16 INENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN   95 (288)
Q Consensus        16 ~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~   95 (288)
                      +++|+|+|++++ +++||.+|+.+|+ +++++|+|||+|+||+|||+||||||                           
T Consensus         1 ~~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk---------------------------   51 (89)
T 1nfj_A            1 MAEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVR---------------------------   51 (89)
T ss_dssp             --CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHH---------------------------
T ss_pred             CCCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHH---------------------------
Confidence            368999999998 8999999999999 57999999999999999999999999                           


Q ss_pred             hhhHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           96 QLAICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        96 ~~~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                               +|+ ++|| |.++|+|+++.|     |+|     .+|++|+|+|+|++
T Consensus        52 ---------~r~~~gl~i~~i~i~s~~i~~-----e~g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           52 ---------NRFMPGVKVKEIKIDTEELES-----EQG-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             ---------HHTCTTCEEEEEEEEEEECCC-----BTT-----BCCEEEEEEEEEEC
T ss_pred             ---------HhccCCcEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence                     777 9999 999999998875     355     67999999999985

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.86  E-value=2.7e-21  Score=154.94  Aligned_cols=89  Identities=33%  Similarity=0.503  Sum_probs=78.7

Q ss_pred             CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHh
Q 023067           15 PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIY   94 (288)
Q Consensus        15 ~~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~   94 (288)
                      +.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||                          
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk--------------------------   57 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVR--------------------------   57 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH--------------------------
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHH--------------------------
Confidence            4578999999999 9999999999999 57999999999999999999999999                          


Q ss_pred             hhhhHhhhhhcccCc--c-eeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067           95 NQLAICIIEQKRIPQ--L-HQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR  151 (288)
Q Consensus        95 ~~~~~~~~~~~ri~g--L-hQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd  151 (288)
                                +|+.+  | ||.++|+|+++.|     |+|     .+|+||+|+|+|++.
T Consensus        58 ----------~r~~~~~l~~~~i~i~s~~i~~-----e~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           58 ----------NRFLPDKIEIKEIRVGSQVVTS-----QDG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             ----------HHTSTTTEEEEEEEEEEEEEEE-----TTS-----CEEEEEEEEEEEEEC
T ss_pred             ----------HhccCCceEEEEEEeeeEEEec-----CCC-----cEEEeeEEEEEEEcC
Confidence                      78754  8 8999999999977     345     689999999999863

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.85  E-value=4.3e-21  Score=150.96  Aligned_cols=84  Identities=30%  Similarity=0.527  Sum_probs=73.1

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      +|+|+|+++ .+++||.+|+.+|++ + ++|+|||+|+||+|||+||||||                             
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk-----------------------------   49 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIR-----------------------------   49 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHH-----------------------------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHH-----------------------------
Confidence            699999999 999999999999996 6 99999999999999999999999                             


Q ss_pred             hHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           98 AICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        98 ~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                             +|+ ++|| |.++|+|+++.|     |+|     .+|++|+|+|+|++
T Consensus        50 -------~r~~~~l~v~~i~i~s~~i~~-----e~g-----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           50 -------NRFIKDIKIKKIEIGTDKVKN-----PDG-----REVNVSTIEIVLAK   87 (87)
T ss_dssp             -------HHTCTTCEEEEEEEEEEC-----------------CCCEEEEEEEEEC
T ss_pred             -------HhccCCeEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence                   777 8899 999999999887     244     67999999999985

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.73  E-value=1.5e-17  Score=132.09  Aligned_cols=89  Identities=30%  Similarity=0.434  Sum_probs=78.2

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ   96 (288)
Q Consensus        17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~   96 (288)
                      ++|.|+|.++ .+++||.+|+.+|+ ++.++|+|||+|+||+|||++|||||                            
T Consensus         3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k----------------------------   52 (91)
T 3toe_A            3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVR----------------------------   52 (91)
T ss_dssp             --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred             ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHH----------------------------
Confidence            3688999988 59999999999999 57999999999999999999999999                            


Q ss_pred             hhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067           97 LAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR  151 (288)
Q Consensus        97 ~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd  151 (288)
                              +|+..   .+++.++++...|.+.++|     .+|+||+|+|+|++|
T Consensus        53 --------~R~~~---~v~v~~I~I~se~~~~e~G-----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           53 --------NRFIP---DIQIENIDICTEEIIGNEG-----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             --------HHTCT---TCEEEEEEEEEEEEECTTS-----SEEEEEEEEEEEEC-
T ss_pred             --------HhccC---CcEEEEEEeeeEEeecCCC-----ceeEeeEEEEEEECC
Confidence                    67653   5888889999999999888     578999999999986

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.73  E-value=9.1e-18  Score=132.68  Aligned_cols=84  Identities=20%  Similarity=0.266  Sum_probs=70.2

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ   96 (288)
Q Consensus        17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~   96 (288)
                      ++|.|+|+++ .++|||.+|+.+|+ +++++|+|||+|+||+|||+||||||                            
T Consensus         5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk----------------------------   54 (89)
T 2bky_X            5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLK----------------------------   54 (89)
T ss_dssp             CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred             CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHH----------------------------
Confidence            3567777776 89999999999999 58999999999999999999999999                            


Q ss_pred             hhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067           97 LAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR  151 (288)
Q Consensus        97 ~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd  151 (288)
                              +|+.+.||+.+|..-.        |+     ..+|+||+|+|+|++.
T Consensus        55 --------~R~~~~~~i~~i~i~s--------e~-----~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           55 --------DRLGDGVQLVNVQTGS--------EV-----RDRRRISYILLRLKRV   88 (89)
T ss_dssp             --------HHHGGGEEEEEEEEEE--------EE-----ETTEEEEEEEEEEEEC
T ss_pred             --------HhccCceEEEEEEecc--------cc-----CcceEeeeEEEEEEec
Confidence                    8888888886654321        11     5679999999999863

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.58  E-value=8.3e-15  Score=122.96  Aligned_cols=90  Identities=24%  Similarity=0.345  Sum_probs=72.1

Q ss_pred             CCCCeEEEcCC-CchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHh
Q 023067           16 INENEIRITTQ-GAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIY   94 (288)
Q Consensus        16 ~~~NeIRVt~~-~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~   94 (288)
                      ..+|+|+|+.+ ..+++||.+|+.+|+  ++++|+|||||.||++||+||||||                          
T Consensus        18 ~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLk--------------------------   69 (130)
T 1vm0_A           18 QKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILK--------------------------   69 (130)
T ss_dssp             -CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHH--------------------------
T ss_pred             CCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHH--------------------------
Confidence            46999999964 678899999999998  5799999999999999999999999                          


Q ss_pred             hhhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCC
Q 023067           95 NQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRE  152 (288)
Q Consensus        95 ~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~  152 (288)
                                +|....++.+.++|+++.+.     ++    ....++|.|.|+|.+.+
T Consensus        70 ----------rr~l~~ikkI~t~t~~i~~~-----~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           70 ----------NNGFAVEKKIMTSIVDIKDD-----AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             ----------HTTSEEEEEEEEEEEEEC---------------CEEEEEEEEEEEECT
T ss_pred             ----------hcCcceEEEEEeeeEEeccC-----CC----CcccccceEEEEEEecC
Confidence                      78777777788888887543     11    13345799999999654

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.9e-14  Score=120.09  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             ccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhhc---CCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccC
Q 023067            7 VEKPKPESPIN----ENEIRITTQGAIRNYITYATTLLQEK---HAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLS   79 (288)
Q Consensus         7 v~~~~~~~~~~----~NeIRVt~~~~irnyV~~A~~lL~~~---~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~   79 (288)
                      +-++.+-.|..    +|.|+|++++.|.+.|..|.+||++-   +.++|+|+|||+||+||+++|..|+           
T Consensus        15 irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq-----------   83 (140)
T 3iab_B           15 VTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQ-----------   83 (140)
T ss_dssp             CEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHH-----------
T ss_pred             cCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHh-----------
Confidence            33444444544    89999999999999999999999852   5799999999999999999999998           


Q ss_pred             CCcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEeccccccccCC------------CcceeEeeeeeeEEEE
Q 023067           80 PISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEG------------LVPVEMTRHVSMISIT  147 (288)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eeg------------l~~~~v~R~VsaI~It  147 (288)
                                               .. .++.-...++||+++|+++|.++.            .+.....|+||+|+|+
T Consensus        84 -------------------------~~-~~~~V~V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~Veir  137 (140)
T 3iab_B           84 -------------------------DQ-KNKKIEVYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELR  137 (140)
T ss_dssp             -------------------------HT-TCCCEEEEEEEEEEEEECC--------------------CEEEEEEEEEEEE
T ss_pred             -------------------------hc-CCEEEEEEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEE
Confidence                                     32 468888999999999999998654            5678899999999999


Q ss_pred             eeC
Q 023067          148 FST  150 (288)
Q Consensus       148 LSk  150 (288)
                      |..
T Consensus       138 Iy~  140 (140)
T 3iab_B          138 IYV  140 (140)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            863

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.8e-05  Score=68.18  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             EEEcCCCchhHHHHHHHHHHhh-----cCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067           21 IRITTQGAIRNYITYATTLLQE-----KHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN   95 (288)
Q Consensus        21 IRVt~~~~irnyV~~A~~lL~~-----~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~   95 (288)
                      +.|+++.+|+..|+.-.++|..     ...+.|.|.+.|..|.|++++.||+|.    +                     
T Consensus        47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk----~---------------------  101 (158)
T 3iab_A           47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKK----G---------------------  101 (158)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHH----H---------------------
T ss_pred             EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHH----H---------------------
Confidence            3499999999999999888851     246899999999999999999999991    0                     


Q ss_pred             hhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCC
Q 023067           96 QLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRE  152 (288)
Q Consensus        96 ~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~  152 (288)
                             .+.+-+.|||++++++...+..=.  -|   -++....||.+-+.+++.+
T Consensus       102 -------~~~~~~~l~Q~NkL~~f~~v~~gr--NE---Lle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          102 -------YIKNNKKIYQWNKLTSFDIKREGR--NE---LQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             -------HHTTTCCCEEEEEEEEEEEC------------CCCCEEEEEEEEEEESSS
T ss_pred             -------hhcCCccHHHHhhhhhhccCCccc--cH---HHHhhcCCCEEEEEEeccc
Confidence                   124556799999999975543211  12   2466679999888888754

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=90.53  E-value=0.049  Score=44.25  Aligned_cols=13  Identities=8%  Similarity=0.028  Sum_probs=5.9

Q ss_pred             EeeeeeeEEEEee
Q 023067          137 MTRHVSMISITFS  149 (288)
Q Consensus       137 v~R~VsaI~ItLS  149 (288)
                      +.|-.+++.|.++
T Consensus        59 ~IRG~nI~~I~~p   71 (119)
T 1b34_A           59 SIRGNNIRYFILP   71 (119)
T ss_dssp             EECGGGEEEEECC
T ss_pred             EEcCCeEEEEEec
Confidence            3444444444443

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=80.47  E-value=0.24  Score=39.92  Aligned_cols=38  Identities=8%  Similarity=0.069  Sum_probs=29.1

Q ss_pred             eeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067          140 HVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ  177 (288)
Q Consensus       140 ~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~  177 (288)
                      .-++..|.|.+++.+  .+.++|++|.+.++++.|.+.++
T Consensus        63 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~  102 (156)
T 1h2v_Z           63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN  102 (156)
T ss_dssp             GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred             cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence            345566777777655  56799999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	288
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	2e-20
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	2e-20
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	3e-19
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-15
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	6e-13

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 45/131 (34%)

Query: 19  NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTL 78
           N + I  +  + NY+  A TLL +    EIV+KA G+AI+K V   EI++          
Sbjct: 2   NVVLIGKKP-VMNYVLAALTLLNQG-VSEIVIKARGRAISKAVDTVEIVR---------- 49

Query: 79  SPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMT 138
                                      R   L     I  + +       ++G       
Sbjct: 50  --------------------------NRF--LPDKIEIKEIRVGSQVVTSQDG-----RQ 76

Query: 139 RHVSMISITFS 149
             VS I I   
Sbjct: 77  SRVSTIEIAIR 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 46/132 (34%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFT 77
           E+ + +  +  + NY+    T L E    E+V+KA G+AI++ V +AEI++         
Sbjct: 1   EHVVYVGNKP-VMNYVLATLTQLNEGA-DEVVIKARGRAISRAVDVAEIVR--------- 49

Query: 78  LSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEM 137
                                       R         +  + I       E+G      
Sbjct: 50  ---------------------------NR---FMPGVKVKEIKIDTEELESEQG-----R 74

Query: 138 TRHVSMISITFS 149
             +VS I I  +
Sbjct: 75  RSNVSTIEIVLA 86

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 47/132 (35%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFT 77
           +N + I  +  + NY+    T L      E+++KA G+AINK V +AE+I+         
Sbjct: 2   DNVVLIGKKP-VMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIR--------- 49

Query: 78  LSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEM 137
                                       R     +D  I  + I        +G      
Sbjct: 50  ---------------------------NR---FIKDIKIKKIEIGTDKVKNPDG-----R 74

Query: 138 TRHVSMISITFS 149
             +VS I I  +
Sbjct: 75  EVNVSTIEIVLA 86

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
           NEI +     + +++     L  +    E++LK  G+ I+K V +   +K
Sbjct: 2  LNEIVVRKTKNVEDHVLDVIVLFNQG-IDEVILKGTGREISKAVDVYNSLK 51

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (149), Expect = 6e-13
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 18 ENEIRITTQG-AIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68
          +N I+++     +  Y+  A   +Q+    ++ L A+G AI   V + EI+K
Sbjct: 2  KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILK 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.83
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.8
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.74
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.69
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.62

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.83  E-value=1.1e-20  Score=147.57  Aligned_cols=89  Identities=31%  Similarity=0.469  Sum_probs=82.5

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      .|.|+|..+. ++|||.+|+.+|++ +.++|+|||+|+||+|||++|||||                             
T Consensus         1 ~n~I~IG~Kp-~mnYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik-----------------------------   49 (89)
T d2bkya1           1 SNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVR-----------------------------   49 (89)
T ss_dssp             CCEEECCSSC-HHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHH-----------------------------
T ss_pred             CCEEEECCCc-HHHHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHH-----------------------------
Confidence            3899999886 78999999999984 7899999999999999999999999                             


Q ss_pred             hHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067           98 AICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR  151 (288)
Q Consensus        98 ~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd  151 (288)
                             +|+  |||.++|.++++.++|.|.+||     .+|+||+|.|+|+++
T Consensus        50 -------~R~--l~~~~~i~~i~I~se~~~~~~G-----~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          50 -------NRF--LPDKIEIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             -------HHT--STTTEEEEEEEEEEEEEEETTS-----CEEEEEEEEEEEEEC
T ss_pred             -------Hhc--ccCceEEEEEEeccEEeecCCC-----cEEEEEEEEEEEEcC
Confidence                   786  9999999999999999999999     488999999999974

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=5.5e-20  Score=143.06  Aligned_cols=87  Identities=30%  Similarity=0.462  Sum_probs=80.4

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      +|+|+|+++. ++|||.+|+.+|++ +.++|+|||+|+||+|||++|||||                             
T Consensus         1 en~I~Ig~Kp-~~~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k-----------------------------   49 (87)
T d1nfja_           1 EHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVR-----------------------------   49 (87)
T ss_dssp             CEEEECCSSC-HHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHH-----------------------------
T ss_pred             CCEEEEcCCc-HHHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHH-----------------------------
Confidence            6899999995 78999999999985 7899999999999999999999999                             


Q ss_pred             hHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           98 AICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        98 ~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                             +|   |||.++|.++++.++|.|.+||.     .|+||+|.|+|++
T Consensus        50 -------~r---~~~~~~i~~i~i~se~~~~e~g~-----~r~VS~IeI~L~K   87 (87)
T d1nfja_          50 -------NR---FMPGVKVKEIKIDTEELESEQGR-----RSNVSTIEIVLAK   87 (87)
T ss_dssp             -------HH---TCTTCEEEEEEEEEEECCCBTTB-----CCEEEEEEEEEEC
T ss_pred             -------Hh---ccCCcEEEEEEEccEEEecCCCc-----eeEEEEEEEEEeC
Confidence                   66   68999999999999999999984     6899999999985

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=2.3e-18  Score=133.82  Aligned_cols=86  Identities=30%  Similarity=0.437  Sum_probs=69.8

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      +|+|+|+++. +++||.+|+.+|++.  ++|+|||+|+||+|||++|||||                             
T Consensus         2 en~I~Ig~KP-~m~YV~~~~~~~~~~--~eV~lKArG~aIsrAVdVaEiik-----------------------------   49 (87)
T d1nh9a_           2 DNVVLIGKKP-VMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIR-----------------------------   49 (87)
T ss_dssp             CSEEEECSSC-HHHHHHHHHHHHHHC--SEEEEEEEGGGHHHHHHHHHHHH-----------------------------
T ss_pred             CCEEEEcCCC-HHHHHHHHHHHhccC--CeEEEEEcchhhhHHHHHHHHHH-----------------------------
Confidence            7999999996 779999999999974  89999999999999999999999                             


Q ss_pred             hHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           98 AICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        98 ~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                             +|+.+.|+   |.++++.++|.|.+||     .+|+||.|.|+|++
T Consensus        50 -------~R~~~~~~---i~~i~i~se~~~~~~g-----~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          50 -------NRFIKDIK---IKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK   87 (87)
T ss_dssp             -------HHTCTTCE---EEEEEEEEEC------------CCCEEEEEEEEEC
T ss_pred             -------HhccCCeE---EEEEEecceEEecCCC-----ceeEEEEEEEEEeC
Confidence                   78666555   5666788889999888     47899999999985

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.69  E-value=5.6e-17  Score=125.72  Aligned_cols=83  Identities=23%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL   97 (288)
Q Consensus        18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~   97 (288)
                      .|||+|+.+..++|||.+|+.+|++ +.++|+|||+|+||+|||.+|||||                             
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir-----------------------------   51 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLK-----------------------------   51 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHH-----------------------------
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHH-----------------------------
Confidence            6999999999999999999999975 7899999999999999999999999                             


Q ss_pred             hHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067           98 AICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST  150 (288)
Q Consensus        98 ~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk  150 (288)
                             +|++++||++.|..-+        |+     ...|.||.|.|+|.+
T Consensus        52 -------~R~~~~v~i~~I~i~s--------E~-----~~~r~VS~IeI~l~k   84 (86)
T d2bkyx1          52 -------DRLGDGVQLVNVQTGS--------EV-----RDRRRISYILLRLKR   84 (86)
T ss_dssp             -------HHHGGGEEEEEEEEEE--------EE-----ETTEEEEEEEEEEEE
T ss_pred             -------HhccCCeEEEEEEecc--------cc-----CCceEEEEEEEEEEe
Confidence                   8999999998877422        11     346789999999986

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=1.4e-15  Score=120.50  Aligned_cols=89  Identities=25%  Similarity=0.339  Sum_probs=75.4

Q ss_pred             CCCeEEEcCCCc-hhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067           17 NENEIRITTQGA-IRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN   95 (288)
Q Consensus        17 ~~NeIRVt~~~~-irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~   95 (288)
                      .+|+|+|+.+.+ +++||.+|+.+|++.  ++|+|+|+|.||++||.||||||                           
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~--~eV~l~a~G~AI~~aV~vaeil~---------------------------   51 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILK---------------------------   51 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHH--SEEEEEEEGGGHHHHHHHHHHHH---------------------------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccC--CeEEEEecHHHHHHHHHHHHHHH---------------------------
Confidence            379999998545 999999999999874  79999999999999999999999                           


Q ss_pred             hhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCC
Q 023067           96 QLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRE  152 (288)
Q Consensus        96 ~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~  152 (288)
                               +|....|+.++|++.++.+.-         -...+++|.|.|.|.+.+
T Consensus        52 ---------~r~~~~i~~I~t~s~~~~~~~---------~gr~~~vs~IEI~L~K~~   90 (99)
T d1vm0a_          52 ---------NNGFAVEKKIMTSIVDIKDDA---------RGRPVQKAKIEITLVKSE   90 (99)
T ss_dssp             ---------HTTSEEEEEEEEEEEEEC---------------CEEEEEEEEEEEECT
T ss_pred             ---------hcCceEEEEEEeeeEEeecCC---------CCcccccceEEEEEeeCc
Confidence                     888899999999999886532         134679999999999865