Citrus Sinensis ID: 023069

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK
ccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHcccccccc
cccccHHEEEcccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcc
MEGKEEDVRVGanryresqpigtaaqtqdvkdytepppaplfepgelsswsFYRAGIAEFVATFLFLYITVLTVMGvskskskcstVGIQGIAWAFGGMIFALVYCTagisgghinpaVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMlggganmlskgyskgdglgaEIVGTFVLVYTVFSatdakrnardshvpilaplpIGFAVFLVHLAtipitgtginparSLGAALIynkdqawddhwifwAGPFIGAALAALYHQIVIRAIPFKSK
megkeedvrvganryresqpigtaaqtqdvkDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK
MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK
*********************************************ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPF***
**************************************APLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNA*DSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI*AI*****
**********GANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK
*******************************DYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query287 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 1.0 0.996 0.871 1e-149
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 1.0 0.993 0.868 1e-148
Q39196287 Probable aquaporin PIP1-4 yes no 0.996 0.996 0.874 1e-148
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 1.0 0.993 0.861 1e-146
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.993 0.996 0.853 1e-144
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 1.0 0.996 0.846 1e-144
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 1.0 0.996 0.850 1e-142
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 1.0 0.982 0.855 1e-142
Q08451286 Probable aquaporin PIP-ty N/A no 0.982 0.986 0.841 1e-142
P25794289 Probable aquaporin PIP-ty N/A no 1.0 0.993 0.826 1e-139
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  526 bits (1355), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/287 (87%), Positives = 269/287 (93%)

Query: 1   MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEF 60
           MEGKEEDVR+GAN++ E QPIGTAAQ  D KDY EPPPAPLFEPGEL SWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 61  VATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
           +ATFLFLYITVLTVMGV+ S SKC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 FGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGL 180
           FGLFLARKLSLTRA+FYM+MQCLGAICGA VVKGFQK  YE  GGGAN+++ GY+KGDGL
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGL 180

Query: 181 GAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 240
           GAEIVGTF+LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR
Sbjct: 181 GAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 240

Query: 241 SLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK 287
           SLGAA+IYN+  AWDDHWIFW GPFIGAALAA+YHQ+VIRAIPFKS+
Sbjct: 241 SLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSR 287
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
224140389287 aquaporin, MIP family, PIP subfamily [Po 1.0 1.0 0.933 1e-155
356568060287 PREDICTED: probable aquaporin PIP1-2-lik 1.0 1.0 0.916 1e-153
300793588287 TPA_inf: aquaporin PIP1;6 [Gossypium hir 1.0 1.0 0.919 1e-153
255581067288 Aquaporin PIP1.1, putative [Ricinus comm 1.0 0.996 0.927 1e-153
238814672285 plasma intrinsic protein 1;3 [Juglans re 0.975 0.982 0.925 1e-152
217073212289 unknown [Medicago truncatula] 1.0 0.993 0.892 1e-149
388506584289 unknown [Medicago truncatula] gi|3885199 1.0 0.993 0.889 1e-148
335954641289 plasma membrane intrinsic protein 1 [Jat 1.0 0.993 0.875 1e-148
225448357286 PREDICTED: probable aquaporin PIP1-2 [Vi 0.996 1.0 0.885 1e-148
374341147286 plasma membrane 1;1 aquaporin [Vitis vin 0.996 1.0 0.885 1e-148
>gi|224140389|ref|XP_002323565.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222868195|gb|EEF05326.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/287 (93%), Positives = 277/287 (96%)

Query: 1   MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEF 60
           MEG+EEDVRVGAN+Y E QPIGTAAQ QDVKDYT+PPPAPLFEPGELSSWSFYRAGIAEF
Sbjct: 1   MEGREEDVRVGANKYGERQPIGTAAQAQDVKDYTDPPPAPLFEPGELSSWSFYRAGIAEF 60

Query: 61  VATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
           VATFLFLYITVLTVMGV+KS +KCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT
Sbjct: 61  VATFLFLYITVLTVMGVAKSPTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 FGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGL 180
           FGL LARKLSLTRAVFYM+MQCLGAICGAAVVK FQKSQYEMLGGGAN +S GY+KG GL
Sbjct: 121 FGLLLARKLSLTRAVFYMLMQCLGAICGAAVVKAFQKSQYEMLGGGANTVSTGYAKGSGL 180

Query: 181 GAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 240
           GAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR
Sbjct: 181 GAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 240

Query: 241 SLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK 287
           SLGAALIYNKDQAWDDHWIFW GPFIGAALA+LYHQIVIRAIPFKSK
Sbjct: 241 SLGAALIYNKDQAWDDHWIFWVGPFIGAALASLYHQIVIRAIPFKSK 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356568060|ref|XP_003552231.1| PREDICTED: probable aquaporin PIP1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|300793588|tpg|DAA33860.1| TPA_inf: aquaporin PIP1;6 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255581067|ref|XP_002531349.1| Aquaporin PIP1.1, putative [Ricinus communis] gi|223529047|gb|EEF31033.1| Aquaporin PIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|238814672|gb|ACR56612.1| plasma intrinsic protein 1;3 [Juglans regia] Back     alignment and taxonomy information
>gi|217073212|gb|ACJ84965.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388506584|gb|AFK41358.1| unknown [Medicago truncatula] gi|388519993|gb|AFK48058.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|335954641|gb|AEH76327.1| plasma membrane intrinsic protein 1 [Jatropha curcas] Back     alignment and taxonomy information
>gi|225448357|ref|XP_002268084.1| PREDICTED: probable aquaporin PIP1-2 [Vitis vinifera] gi|8071622|gb|AAF71817.1| putative aquaporin PIP1-1 [Vitis cinerea var. helleri x Vitis rupestris] gi|124702460|gb|ABN14347.1| aquaporin PIP1;1 [Vitis vinifera] gi|147826770|emb|CAN77353.1| hypothetical protein VITISV_038809 [Vitis vinifera] Back     alignment and taxonomy information
>gi|374341147|gb|AEZ35024.1| plasma membrane 1;1 aquaporin [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query287
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.996 0.996 0.874 4.1e-136
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.993 0.996 0.860 1.2e-134
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.996 0.996 0.857 6.9e-134
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.993 0.996 0.846 2.3e-133
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.888 0.847 0.852 2e-118
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.937 0.960 0.710 2e-104
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.891 0.898 0.744 4.7e-103
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.891 0.920 0.726 2.6e-102
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.926 0.926 0.721 8.8e-102
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.891 0.898 0.732 1.1e-101
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 251/287 (87%), Positives = 270/287 (94%)

Query:     1 MEGKEEDVRVGANRYRESQPIGTAAQTQDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEF 60
             MEGKEEDVRVGAN++ E QPIGT+AQ+ D KDY EPPPAPLFEPGELSSWSFYRAGIAEF
Sbjct:     1 MEGKEEDVRVGANKFPERQPIGTSAQSTD-KDYKEPPPAPLFEPGELSSWSFYRAGIAEF 59

Query:    61 VATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120
             +ATFLFLYITVLTVMGV ++ + C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT
Sbjct:    60 IATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 119

Query:   121 FGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGL 180
             FGLFLARKLSLTRAVFYMIMQCLGAICGA VVKGFQ + Y+ LGGGAN ++ GY+KG GL
Sbjct:   120 FGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGL 179

Query:   181 GAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 240
             GAEI+GTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR
Sbjct:   180 GAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPAR 239

Query:   241 SLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKSK 287
             SLGAA+IYNKD +WDDHWIFW GPFIGAALAALYHQIVIRAIPFKSK
Sbjct:   240 SLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0009414 "response to water deprivation" evidence=IEP
GO:0006833 "water transport" evidence=RCA;IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.87101.00.9965yesno
Q8LAA6PIP15_ARATHNo assigned EC number0.85710.99650.9965nono
P93004PIP27_ARATHNo assigned EC number0.71000.93720.9607nono
Q9SV31PIP25_ARATHNo assigned EC number0.72760.87450.8776nono
P29975AQP1_RATNo assigned EC number0.41700.81180.8661yesno
P43287PIP22_ARATHNo assigned EC number0.74420.89190.8982nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.85011.00.9965nono
Q84RL7PIP21_MAIZENo assigned EC number0.71590.89190.8827N/Ano
P30302PIP23_ARATHNo assigned EC number0.73280.89190.8982nono
Q9AQU5PIP13_MAIZENo assigned EC number0.85561.00.9828N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.72200.87450.8776nono
Q9AR14PIP15_MAIZENo assigned EC number0.84661.00.9965N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.74510.87450.8715N/Ano
P61837PIP11_ARATHNo assigned EC number0.84660.99300.9965nono
Q08451PIP1_SOLLCNo assigned EC number0.84150.98250.9860N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.70610.89190.8797nono
P61838PIP11_VICFANo assigned EC number0.84660.99300.9965N/Ano
P42767PIP1_ATRCANo assigned EC number0.72200.90240.9184N/Ano
Q06611PIP12_ARATHNo assigned EC number0.85360.99300.9965nono
Q9ATN0PIP16_MAIZENo assigned EC number0.80980.98600.9560N/Ano
Q6K215PIP22_ORYSJNo assigned EC number0.76440.87450.8715nono
Q39196PIP14_ARATHNo assigned EC number0.87450.99650.9965yesno
Q41870PIP11_MAIZENo assigned EC number0.82570.99650.9965N/Ano
P43286PIP21_ARATHNo assigned EC number0.73660.89190.8919nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.74130.87450.8655nono
Q02013AQP1_MOUSENo assigned EC number0.41290.81180.8661yesno
Q9XF59PIP12_MAIZENo assigned EC number0.86111.00.9930N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.73680.89890.9052N/Ano
Q08733PIP13_ARATHNo assigned EC number0.86060.99300.9965yesno
Q9ZVX8PIP28_ARATHNo assigned EC number0.72650.89190.9208nono
P25794PIP2_PEANo assigned EC number0.82691.00.9930N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70720.89190.8919N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.74410.89190.9078nono
Q9ATM6PIP24_MAIZENo assigned EC number0.71890.92680.9236N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.71890.92680.9204N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.86801.00.9930nono
Q9ATM8PIP22_MAIZENo assigned EC number0.70670.89190.8767N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XVI0408
aquaporin, MIP family, PIP subfamily (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-99
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 8e-81
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 5e-72
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-48
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 8e-38
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 8e-34
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 4e-32
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 7e-32
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-20
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 5e-20
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-18
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-15
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 2e-14
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 5e-05
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  288 bits (740), Expect = 6e-99
 Identities = 122/230 (53%), Positives = 151/230 (65%), Gaps = 12/230 (5%)

Query: 46  ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVY 105
           EL S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----GLLAVALAFGLALFTLVY 55

Query: 106 CTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 165
           CT  ISG H+NPAVTF L + R++SL RA++Y+I Q LGAICGAA++KG      +  GG
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG-LQRAGG 114

Query: 166 GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVH 225
            AN L+ G + G     EI+ TF LVYTVF+ TD  RN    HV   APL IGFAVFL H
Sbjct: 115 FANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLNH 171

Query: 226 LATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 275
           LA  P TG  +NPARS G A++  K   WDDHW++W GP IGAALAAL +
Sbjct: 172 LAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 287
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.59
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
PLN00026 298 aquaporin NIP; Provisional 99.57
PLN00184 296 aquaporin NIP1; Provisional 99.53
PLN00183 274 putative aquaporin NIP7; Provisional 99.49
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
PLN00166 250 aquaporin TIP2; Provisional 99.46
PLN00167 256 aquaporin TIP5; Provisional 99.4
PLN00027 252 aquaporin TIP; Provisional 99.37
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.35
PRK05420 231 aquaporin Z; Provisional 99.35
PTZ00016 294 aquaglyceroporin; Provisional 99.34
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.07
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.94
COG0580 241 GlpF Glycerol uptake facilitator and related perme 98.93
COG2116265 FocA Formate/nitrite family of transporters [Inorg 92.99
PRK10805285 formate transporter; Provisional 89.94
PRK11562268 nitrite transporter NirC; Provisional 89.74
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-53  Score=370.34  Aligned_cols=228  Identities=52%  Similarity=0.799  Sum_probs=204.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhHHHHHHHHHHHHHHHhhccccccccchHHHHHHH
Q 023069           45 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLF  124 (287)
Q Consensus        45 ~~~~~~~~~r~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPAvTla~~  124 (287)
                      .+.++++.+|++++||++|++++|++|+++.....   .....+.+.+++++|+++++.+|+++++||||+|||||++++
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~   79 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFA   79 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHH
Confidence            35577899999999999999999999998876553   123456788999999999999999999999999999999999


Q ss_pred             HhcCCchhhHHHHHHHhhHHHHHHhHHHHhhchhhHHHhcCCcccccCCCCCCCchhHHHHHHHHHHHHHHH-hcccccc
Q 023069          125 LARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRN  203 (287)
Q Consensus       125 l~g~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~L~~~il~-~~~~~~~  203 (287)
                      +.|++++.+++.|+++|++|+++|+++++.+.+.+....+.+.+.+.++.+.+|+++.|++.||+|++++++ .+|+++.
T Consensus        80 ~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   80 VGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             HhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            999999999999999999999999999999998753333445566778889999999999999999999999 7787765


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhHHHHHHHHHHHHHHHhccCC
Q 023069          204 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIP  283 (287)
Q Consensus       204 ~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~vgP~~Gai~a~~~y~~~~~~~~  283 (287)
                             .+.|+.||+++.+.+++++++||++|||||+|||+++++   .|++|||||+||++|+++++++||+++.+++
T Consensus       160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~  229 (238)
T KOG0223|consen  160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDE  229 (238)
T ss_pred             -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCcc
Confidence                   478999999999999999999999999999999999986   5999999999999999999999999998774


Q ss_pred             CC
Q 023069          284 FK  285 (287)
Q Consensus       284 ~~  285 (287)
                      .+
T Consensus       230 ~~  231 (238)
T KOG0223|consen  230 SE  231 (238)
T ss_pred             cc
Confidence            43

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-112
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 3e-43
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-41
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 6e-37
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-36
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-36
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 5e-35
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 7e-30
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 8e-30
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 9e-30
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 3e-28
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-28
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 5e-19
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 3e-18
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 3e-18
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 9e-18
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 9e-18
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-17
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-17
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 9e-17
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 3e-16
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-15
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-13
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-12
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-10
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-07
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  399 bits (1026), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/270 (71%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
Query: 18  SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
           S+ +   AQ  Q  KDY +PPPAP F+ GEL  WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 2   SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 61
Query: 77  VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
            SK    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+ 
Sbjct: 62  HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALV 121
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
           YMI QCLGAICG  +VK F K  Y   GGGAN ++ GY+KG  LGAEI+GTFVLVYTVFS
Sbjct: 122 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 181
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
           ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 182 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 241
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            WIFW GPFIGAA+AA YHQ V+RA   K+
Sbjct: 242 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-140
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-115
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-107
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-105
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-104
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-104
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-104
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-104
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-102
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-04
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-100
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-80
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-51
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-50
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  397 bits (1021), Expect = e-140
 Identities = 193/277 (69%), Positives = 218/277 (78%), Gaps = 1/277 (0%)

Query: 11  GANRYRESQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYI 69
                  S+ +   AQ  Q  KDY +PPPAP F+ GEL  WSF+RA IAEF+AT LFLYI
Sbjct: 18  HMLEDLMSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYI 77

Query: 70  TVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKL 129
           TV TV+G SK    C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+
Sbjct: 78  TVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137

Query: 130 SLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFV 189
            L RA+ YMI QCLGAICG  +VK F K  Y   GGGAN ++ GY+KG  LGAEI+GTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197

Query: 190 LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYN 249
           LVYTVFSATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257

Query: 250 KDQAWDDHWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
            ++ WDD WIFW GPFIGAA+AA YHQ V+RA   K+
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 294
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.59
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.36
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.31
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.3
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.29
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.28
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.25
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.24
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.24
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.24
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.2
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.17
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.17
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 93.64
3kly_A280 Putative formate transporter 1; membrane protein, 83.89
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=3.4e-60  Score=430.65  Aligned_cols=257  Identities=74%  Similarity=1.280  Sum_probs=209.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhHHHHHHHHHHHHHHHhhcc
Q 023069           30 VKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAG  109 (287)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~  109 (287)
                      .||+++|++.+..+.+|+++++++|++++||+|||+|+|++++++++.....++....+++.+++++|+++++.+|++++
T Consensus        38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~  117 (304)
T 3cn5_A           38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG  117 (304)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence            48999999989889999999999999999999999999999998876544333334567888999999999999999999


Q ss_pred             ccccccchHHHHHHHHhcCCchhhHHHHHHHhhHHHHHHhHHHHhhchhhHHHhcCCcccccCCCCCCCchhHHHHHHHH
Q 023069          110 ISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFV  189 (287)
Q Consensus       110 iSGah~NPAvTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~  189 (287)
                      +||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++.++..+.+.+.+.++.+..++|+.|+++|++
T Consensus       118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tfi  197 (304)
T 3cn5_A          118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV  197 (304)
T ss_dssp             TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887766655555556677888999999999999


Q ss_pred             HHHHHHHhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHhCCCCCCCcceehhhhHHHHHH
Q 023069          190 LVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAA  269 (287)
Q Consensus       190 L~~~il~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~~~~~~~~~~wvy~vgP~~Gai  269 (287)
                      |+++++.++|+++...+++.+.+.|+.||++|+++.++++++||++|||||||||+++++++..|+++|+||+||++|++
T Consensus       198 Lv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~  277 (304)
T 3cn5_A          198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAA  277 (304)
T ss_dssp             HHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHH
Confidence            99999998887655432222348899999999999999999999999999999999996544689999999999999999


Q ss_pred             HHHHHHHHHhccCCCCC
Q 023069          270 LAALYHQIVIRAIPFKS  286 (287)
Q Consensus       270 ~a~~~y~~~~~~~~~~~  286 (287)
                      +|+++|++++++.+.|.
T Consensus       278 laa~~y~~l~~~~~~~~  294 (304)
T 3cn5_A          278 VAAAYHQYVLRAAAIKA  294 (304)
T ss_dssp             HHHHHHHTTSCCCC---
T ss_pred             HHHHHHHHHhCCCCCCc
Confidence            99999999998877653
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 287
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-55
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-51
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 5e-44
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.001
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 6e-42
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  177 bits (450), Expect = 2e-55
 Identities = 97/238 (40%), Positives = 138/238 (57%), Gaps = 12/238 (5%)

Query: 46  ELSSWSFYRAGIAEFVATFLFLYITVLTVMG----VSKSKSKCSTVGIQGIAWAFGGMIF 101
           E     F+RA +AEF+A  LF++I++ + +G    +  +++  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 102 ALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYE 161
            L      ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI   A++ G   S   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS-LP 122

Query: 162 MLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAV 221
               G N L+ G + G GLG EI+GT  LV  V + TD +R      +    PL IGF+V
Sbjct: 123 DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFSV 178

Query: 222 FLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
            L HL  I  TG GINPARS G+++I +    + DHWIFW GPFIGAALA L +  ++
Sbjct: 179 ALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query287
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.29
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.23
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.18
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.09
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-51  Score=363.21  Aligned_cols=225  Identities=26%  Similarity=0.374  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccchhHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHhcCCch
Q 023069           52 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSL  131 (287)
Q Consensus        52 ~~r~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~~~~~iSGah~NPAvTla~~l~g~~~~  131 (287)
                      +.|++++||+|||+|+|++++++......+   ...+.+.+++++|+++++.+|+++++||||+|||||+++++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~---~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccC---CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            578999999999999999998776554443   23456778999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhHHHHHHhHHHHhhchhhHHHhc-----------------CCcccccCCCCCCCchhHHHHHHHHHHHHH
Q 023069          132 TRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLG-----------------GGANMLSKGYSKGDGLGAEIVGTFVLVYTV  194 (287)
Q Consensus       132 ~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~E~~~T~~L~~~i  194 (287)
                      .+++.|+++|++|+++|+++++.++++.+....                 ...+.+.++.+..++|+.|+++|++|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999877654321                 112334456678899999999999999999


Q ss_pred             HHhccccccCCCCCCCccchHHHHHHHHHHHHHhcCCCCCccchhhhHHHHHHh----------CCCCCCCcceehhhhH
Q 023069          195 FSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIY----------NKDQAWDDHWIFWAGP  264 (287)
Q Consensus       195 l~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~i~~----------~~~~~~~~~wvy~vgP  264 (287)
                      +.+.|++++...   ....|+.||+.+.+.++..++.||++|||||||||+++.          .++.+|+++||||+||
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999988765432   257899999999999999999999999999999999984          1246899999999999


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 023069          265 FIGAALAALYHQIVIRAI  282 (287)
Q Consensus       265 ~~Gai~a~~~y~~~~~~~  282 (287)
                      ++|+++++++||+++..+
T Consensus       236 ~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         236 IVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999999998764
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure